Build #25

Plan branch:
Next Generation of pyClowder

Build: #25 was successful

Job: Default Job was successful

Stages & jobs

  1. Default Stage

Build log

The build generated 2,514 lines of output.   The output is too long and has been truncated to the last 1,000 lines. Download or view full build log.

30-May-2019 18:08:49 Setting up liblwp-protocol-https-perl (6.06-2) ...
30-May-2019 18:08:49 Processing triggers for libc-bin (2.23-0ubuntu11) ...
30-May-2019 18:08:50 Processing triggers for systemd (229-4ubuntu21.21) ...
30-May-2019 18:08:50 Installing package into '/usr/local/lib/R/site-library'
30-May-2019 18:08:50 (as 'lib' is unspecified)
30-May-2019 18:08:51 trying URL 'http://cran.rstudio.com/src/contrib/jsonlite_1.6.tar.gz'
30-May-2019 18:08:51 Content type 'application/x-gzip' length 1052728 bytes (1.0 MB)
30-May-2019 18:08:51 ==================================================
30-May-2019 18:08:51 downloaded 1.0 MB
30-May-2019 18:08:51
30-May-2019 18:08:52 * installing *source* package 'jsonlite' ...
30-May-2019 18:08:52 ** package 'jsonlite' successfully unpacked and MD5 sums checked
30-May-2019 18:08:52 ** libs
30-May-2019 18:08:52 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api    -fvisibility=hidden  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c base64.c -o base64.o
30-May-2019 18:08:52 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api    -fvisibility=hidden  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c collapse_array.c -o collapse_array.o
30-May-2019 18:08:52 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api    -fvisibility=hidden  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c collapse_object.c -o collapse_object.o
30-May-2019 18:08:52 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api    -fvisibility=hidden  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c collapse_pretty.c -o collapse_pretty.o
30-May-2019 18:08:52 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api    -fvisibility=hidden  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c escape_chars.c -o escape_chars.o
30-May-2019 18:08:52 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api    -fvisibility=hidden  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c integer64_to_na.c -o integer64_to_na.o
30-May-2019 18:08:52 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api    -fvisibility=hidden  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c is_datelist.c -o is_datelist.o
30-May-2019 18:08:52 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api    -fvisibility=hidden  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c is_recordlist.c -o is_recordlist.o
30-May-2019 18:08:52 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api    -fvisibility=hidden  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c is_scalarlist.c -o is_scalarlist.o
30-May-2019 18:08:52 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api    -fvisibility=hidden  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c modp_numtoa.c -o modp_numtoa.o
30-May-2019 18:08:52 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api    -fvisibility=hidden  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c null_to_na.c -o null_to_na.o
30-May-2019 18:08:52 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api    -fvisibility=hidden  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c num_to_char.c -o num_to_char.o
30-May-2019 18:08:53 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api    -fvisibility=hidden  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c parse.c -o parse.o
30-May-2019 18:08:53 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api    -fvisibility=hidden  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c prettify.c -o prettify.o
30-May-2019 18:08:53 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api    -fvisibility=hidden  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c push_parser.c -o push_parser.o
30-May-2019 18:08:53 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api    -fvisibility=hidden  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c r-base64.c -o r-base64.o
30-May-2019 18:08:53 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api    -fvisibility=hidden  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c register.c -o register.o
30-May-2019 18:08:53 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api    -fvisibility=hidden  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c row_collapse.c -o row_collapse.o
30-May-2019 18:08:53 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api    -fvisibility=hidden  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c transpose_list.c -o transpose_list.o
30-May-2019 18:08:53 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api    -fvisibility=hidden  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c validate.c -o validate.o
30-May-2019 18:08:53 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api    -fvisibility=hidden  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c yajl/yajl.c -o yajl/yajl.o
30-May-2019 18:08:53 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api    -fvisibility=hidden  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o
30-May-2019 18:08:53 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api    -fvisibility=hidden  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c yajl/yajl_buf.c -o yajl/yajl_buf.o
30-May-2019 18:08:53 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api    -fvisibility=hidden  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c yajl/yajl_encode.c -o yajl/yajl_encode.o
30-May-2019 18:08:53 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api    -fvisibility=hidden  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c yajl/yajl_gen.c -o yajl/yajl_gen.o
30-May-2019 18:08:54 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api    -fvisibility=hidden  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c yajl/yajl_lex.c -o yajl/yajl_lex.o
30-May-2019 18:08:54 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api    -fvisibility=hidden  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c yajl/yajl_parser.c -o yajl/yajl_parser.o
30-May-2019 18:08:54 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api    -fvisibility=hidden  -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c yajl/yajl_tree.c -o yajl/yajl_tree.o
30-May-2019 18:08:54 ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o
30-May-2019 18:08:54 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/usr/lib/R/lib -lR
30-May-2019 18:08:54 installing to /usr/local/lib/R/site-library/jsonlite/libs
30-May-2019 18:08:54 ** R
30-May-2019 18:08:54 ** inst
30-May-2019 18:08:54 ** preparing package for lazy loading
30-May-2019 18:08:54 ** help
30-May-2019 18:08:54 *** installing help indices
30-May-2019 18:08:54 ** building package indices
30-May-2019 18:08:55 ** installing vignettes
30-May-2019 18:08:55 ** testing if installed package can be loaded
30-May-2019 18:08:55 * DONE (jsonlite)
30-May-2019 18:08:55
30-May-2019 18:08:55 The downloaded source packages are in
30-May-2019 18:08:55         '/tmp/RtmpB2cgOC/downloaded_packages'
30-May-2019 18:08:55 [1] "/usr/local/lib/R/site-library/jsonlite"
30-May-2019 18:09:03 Removing intermediate container 7bc7345bd0c9
30-May-2019 18:09:03 ---> 446847f6b800
30-May-2019 18:09:03 Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/
30-May-2019 18:09:04 ---> c9002915a766
30-May-2019 18:09:04 Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/
30-May-2019 18:09:05 ---> Running in 9d4ed0d7fb4f
30-May-2019 18:09:06 Removing intermediate container 9d4ed0d7fb4f
30-May-2019 18:09:06 ---> 3054c2813815
30-May-2019 18:09:06 Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
30-May-2019 18:09:06 ---> Running in afb428797c64
30-May-2019 18:09:07 Removing intermediate container afb428797c64
30-May-2019 18:09:07 ---> ca316fb12fd0
30-May-2019 18:09:07 Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/
30-May-2019 18:09:07 ---> Running in 1616217cf82b
30-May-2019 18:09:08 Removing intermediate container 1616217cf82b
30-May-2019 18:09:08 ---> e09852837a36
30-May-2019 18:09:08 Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then                 Rscript docker.R;             fi
30-May-2019 18:09:08 ---> Running in d7ae79a095db
30-May-2019 18:09:09 Removing intermediate container d7ae79a095db
30-May-2019 18:09:09 ---> 771f43b44eb9
30-May-2019 18:09:09 Step 9/10 : ONBUILD ADD . /home/clowder/
30-May-2019 18:09:10 ---> Running in 4968186431da
30-May-2019 18:09:10 Removing intermediate container 4968186431da
30-May-2019 18:09:10 ---> bb02dd312471
30-May-2019 18:09:10 Step 10/10 : CMD python r_extractor.py
30-May-2019 18:09:11 ---> Running in a0b19f848564
30-May-2019 18:09:11 Removing intermediate container a0b19f848564
30-May-2019 18:09:11 ---> c63dd785160d
30-May-2019 18:09:11 Successfully built c63dd785160d
30-May-2019 18:09:11 Successfully tagged clowder/extractors-simple-r-extractor:onbuild
30-May-2019 18:09:11 Sending build context to Docker daemon  282.1kB
30-May-2019 18:09:11
30-May-2019 18:09:11 Step 1/9 : FROM ubuntu:16.04
30-May-2019 18:09:11 ---> 2a697363a870
30-May-2019 18:09:11 Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F"     RABBITMQ_EXCHANGE="clowder"     RABBITMQ_QUEUE=""     REGISTRATION_ENDPOINTS=""     EMAIL_SERVER=""     EMAIL_SENDER="extractor"     MAIN_SCRIPT=""
30-May-2019 18:09:11 ---> Using cache
30-May-2019 18:09:11 ---> 272a7d5128c9
30-May-2019 18:09:11 Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends         python         python-pip     && pip install --upgrade setuptools     && rm -rf /var/lib/apt/lists/*
30-May-2019 18:09:11 ---> Using cache
30-May-2019 18:09:11 ---> c4e7a6964674
30-May-2019 18:09:11 Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder
30-May-2019 18:09:11 ---> Using cache
30-May-2019 18:09:11 ---> 1914b71b0a62
30-May-2019 18:09:11 Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/
30-May-2019 18:09:11 ---> Using cache
30-May-2019 18:09:11 ---> d299eee00ea5
30-May-2019 18:09:11 Step 6/9 : RUN pip install --upgrade /tmp/pyclowder     && rm -rf /tmp/pyclowder
30-May-2019 18:09:11 ---> Using cache
30-May-2019 18:09:11 ---> fae4549be034
30-May-2019 18:09:11 Step 7/9 : WORKDIR /home/clowder
30-May-2019 18:09:11 ---> Using cache
30-May-2019 18:09:11 ---> 8ce0d3a12fee
30-May-2019 18:09:11 Step 8/9 : COPY notifications.json /home/clowder
30-May-2019 18:09:11 ---> Using cache
30-May-2019 18:09:11 ---> d14032f0c406
30-May-2019 18:09:11 Step 9/9 : CMD python "./${MAIN_SCRIPT}"
30-May-2019 18:09:11 ---> Using cache
30-May-2019 18:09:11 ---> 478bcb4d8a17
30-May-2019 18:09:11 [Warning] One or more build-args [PYTHON_VERSION] were not consumed
30-May-2019 18:09:11 Successfully built 478bcb4d8a17
30-May-2019 18:09:11 Successfully tagged clowder/pyclowder-python3:latest
30-May-2019 18:09:12 Sending build context to Docker daemon  280.6kB
30-May-2019 18:09:12
30-May-2019 18:09:12 Step 1/6 : FROM clowder/pyclowder
30-May-2019 18:09:12 ---> 478bcb4d8a17
30-May-2019 18:09:12 Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/
30-May-2019 18:09:12 ---> Using cache
30-May-2019 18:09:12 ---> 4c01a6dd50c3
30-May-2019 18:09:12 Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
30-May-2019 18:09:12 ---> Using cache
30-May-2019 18:09:12 ---> 83f69260f77f
30-May-2019 18:09:12 Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/
30-May-2019 18:09:12 ---> Using cache
30-May-2019 18:09:12 ---> 520f221895f7
30-May-2019 18:09:12 Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then                 pip install --no-cache-dir -r requirements.txt;             fi
30-May-2019 18:09:12 ---> Using cache
30-May-2019 18:09:12 ---> 267687c15590
30-May-2019 18:09:12 Step 6/6 : ONBUILD ADD . /home/clowder/
30-May-2019 18:09:12 ---> Using cache
30-May-2019 18:09:12 ---> 5ef86390e095
30-May-2019 18:09:12 [Warning] One or more build-args [PYTHON_VERSION] were not consumed
30-May-2019 18:09:12 Successfully built 5ef86390e095
30-May-2019 18:09:12 Successfully tagged clowder/pyclowder-python3:onbuild
30-May-2019 18:09:12 Sending build context to Docker daemon  6.656kB
30-May-2019 18:09:12
30-May-2019 18:09:12 Step 1/9 : FROM clowder/pyclowder:onbuild
30-May-2019 18:09:12 # Executing 5 build triggers
30-May-2019 18:09:12 ---> Using cache
30-May-2019 18:09:12 ---> Using cache
30-May-2019 18:09:12 ---> Using cache
30-May-2019 18:09:12 ---> Using cache
30-May-2019 18:09:12 ---> Using cache
30-May-2019 18:09:12 ---> b756630b8828
30-May-2019 18:09:12 Step 2/9 : ENV EXTRACTION_FUNC=""
30-May-2019 18:09:12 ---> Using cache
30-May-2019 18:09:12 ---> d138c1478b88
30-May-2019 18:09:12 Step 3/9 : ENV EXTRACTION_MODULE=""
30-May-2019 18:09:12 ---> Using cache
30-May-2019 18:09:12 ---> d7219ac97f01
30-May-2019 18:09:12 Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/
30-May-2019 18:09:12 ---> Using cache
30-May-2019 18:09:12 ---> 4ea0f3adfe66
30-May-2019 18:09:12 Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
30-May-2019 18:09:12 ---> Using cache
30-May-2019 18:09:12 ---> e8d8fa4524e9
30-May-2019 18:09:12 Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/
30-May-2019 18:09:12 ---> Using cache
30-May-2019 18:09:12 ---> d59eb53aa212
30-May-2019 18:09:12 Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then                 pip install --no-cache-dir -r requirements.txt;             fi
30-May-2019 18:09:12 ---> Using cache
30-May-2019 18:09:12 ---> a31ec045df10
30-May-2019 18:09:12 Step 8/9 : ONBUILD ADD . /home/clowder/
30-May-2019 18:09:12 ---> Using cache
30-May-2019 18:09:12 ---> d9f24008b3fb
30-May-2019 18:09:12 Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()"
30-May-2019 18:09:12 ---> Using cache
30-May-2019 18:09:12 ---> 1380bafb2ffb
30-May-2019 18:09:12 [Warning] One or more build-args [PYTHON_VERSION] were not consumed
30-May-2019 18:09:12 Successfully built 1380bafb2ffb
30-May-2019 18:09:12 Successfully tagged clowder/extractors-simple-extractor-python3:onbuild
30-May-2019 18:09:12 Sending build context to Docker daemon  13.31kB
30-May-2019 18:09:12
30-May-2019 18:09:12 Step 1/10 : FROM clowder/pyclowder:latest
30-May-2019 18:09:12 ---> 478bcb4d8a17
30-May-2019 18:09:12 Step 2/10 : ENV R_SCRIPT=""     R_FUNCTION=""
30-May-2019 18:09:12 ---> Using cache
30-May-2019 18:09:12 ---> 9a608bb66aa1
30-May-2019 18:09:12 Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list     && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9     && apt-get -q -q update     && apt-get -y install --no-install-recommends r-base-core r-base-dev     && rm -rf /var/lib/apt/lists/*     && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))"
30-May-2019 18:09:12 ---> Using cache
30-May-2019 18:09:12 ---> 446847f6b800
30-May-2019 18:09:12 Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/
30-May-2019 18:09:12 ---> Using cache
30-May-2019 18:09:12 ---> c9002915a766
30-May-2019 18:09:12 Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/
30-May-2019 18:09:12 ---> Using cache
30-May-2019 18:09:12 ---> 3054c2813815
30-May-2019 18:09:12 Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
30-May-2019 18:09:12 ---> Using cache
30-May-2019 18:09:12 ---> ca316fb12fd0
30-May-2019 18:09:12 Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/
30-May-2019 18:09:12 ---> Using cache
30-May-2019 18:09:12 ---> e09852837a36
30-May-2019 18:09:12 Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then                 Rscript docker.R;             fi
30-May-2019 18:09:12 ---> Using cache
30-May-2019 18:09:12 ---> 771f43b44eb9
30-May-2019 18:09:12 Step 9/10 : ONBUILD ADD . /home/clowder/
30-May-2019 18:09:12 ---> Using cache
30-May-2019 18:09:12 ---> bb02dd312471
30-May-2019 18:09:12 Step 10/10 : CMD python r_extractor.py
30-May-2019 18:09:12 ---> Using cache
30-May-2019 18:09:12 ---> c63dd785160d
30-May-2019 18:09:12 [Warning] One or more build-args [PYTHON_VERSION] were not consumed
30-May-2019 18:09:12 Successfully built c63dd785160d
30-May-2019 18:09:12 Successfully tagged clowder/extractors-simple-r-extractor-python3:onbuild
30-May-2019 18:09:12 Sending build context to Docker daemon  9.216kB
30-May-2019 18:09:12
30-May-2019 18:09:12 Step 1/2 : FROM clowder/pyclowder:onbuild
30-May-2019 18:09:12 # Executing 5 build triggers
30-May-2019 18:09:13 ---> Running in ceaf4a456ac1
30-May-2019 18:09:16 Removing intermediate container ceaf4a456ac1
30-May-2019 18:09:17 ---> Running in 579757d213c1
30-May-2019 18:09:20 Removing intermediate container 579757d213c1
30-May-2019 18:09:20 ---> c69bb69b8bae
30-May-2019 18:09:20 Step 2/2 : ENV MAIN_SCRIPT="wordcount.py"
30-May-2019 18:09:21 ---> Running in 49ca2c1792ce
30-May-2019 18:09:22 Removing intermediate container 49ca2c1792ce
30-May-2019 18:09:22 ---> c78f140f60ae
30-May-2019 18:09:22 Successfully built c78f140f60ae
30-May-2019 18:09:22 Successfully tagged clowder/extractors-wordcount:latest
30-May-2019 18:09:22 Sending build context to Docker daemon   5.12kB
30-May-2019 18:09:22
30-May-2019 18:09:22 Step 1/3 : FROM clowder/extractors-simple-extractor:onbuild
30-May-2019 18:09:22 # Executing 5 build triggers
30-May-2019 18:09:23 ---> Running in b08337efeae7
30-May-2019 18:09:26 Removing intermediate container b08337efeae7
30-May-2019 18:09:28 ---> Running in 68fe490357d2
30-May-2019 18:09:32 Removing intermediate container 68fe490357d2
30-May-2019 18:09:32 ---> 74f8d3096a74
30-May-2019 18:09:32 Step 2/3 : ENV EXTRACTION_FUNC="wordcount"
30-May-2019 18:09:34 ---> Running in aeb2bf07b356
30-May-2019 18:09:35 Removing intermediate container aeb2bf07b356
30-May-2019 18:09:35 ---> db8b8b452123
30-May-2019 18:09:35 Step 3/3 : ENV EXTRACTION_MODULE="wordcount"
30-May-2019 18:09:36 ---> Running in 86c49ae0b7c0
30-May-2019 18:09:37 Removing intermediate container 86c49ae0b7c0
30-May-2019 18:09:37 ---> aad72837cc6d
30-May-2019 18:09:37 Successfully built aad72837cc6d
30-May-2019 18:09:37 Successfully tagged clowder/extractors-wordcount-simple-extractor:latest
30-May-2019 18:09:37 Sending build context to Docker daemon   5.12kB
30-May-2019 18:09:37
30-May-2019 18:09:37 Step 1/2 : FROM clowder/extractors-simple-r-extractor:onbuild
30-May-2019 18:09:37 # Executing 5 build triggers
30-May-2019 18:09:38 ---> Running in a496d6bec386
30-May-2019 18:09:41 Removing intermediate container a496d6bec386
30-May-2019 18:09:42 ---> Running in 9cf56b8d4619
30-May-2019 18:09:45 Removing intermediate container 9cf56b8d4619
30-May-2019 18:09:45 ---> 5226ce846d96
30-May-2019 18:09:45 Step 2/2 : ENV R_SCRIPT="wordcount.R"     R_FUNCTION="process_file"
30-May-2019 18:09:45 ---> Running in b10ea9b31078
30-May-2019 18:09:46 Removing intermediate container b10ea9b31078
30-May-2019 18:09:46 ---> d31f366f931b
30-May-2019 18:09:46 Successfully built d31f366f931b
30-May-2019 18:09:46 Successfully tagged clowder/extractors-wordcount-simple-r-extractor:latest
30-May-2019 18:09:46 Sending build context to Docker daemon  8.192kB
30-May-2019 18:09:46
30-May-2019 18:09:46 Step 1/7 : FROM python:3.5
30-May-2019 18:09:46 ---> 74a0040526f9
30-May-2019 18:09:46 Step 2/7 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq/%2F"
30-May-2019 18:09:46 ---> Using cache
30-May-2019 18:09:46 ---> 0f4f82f9baad
30-May-2019 18:09:46 Step 3/7 : EXPOSE 9999
30-May-2019 18:09:46 ---> Using cache
30-May-2019 18:09:46 ---> c3ca695b477b
30-May-2019 18:09:46 Step 4/7 : RUN pip install pika==0.11.2 requests==2.18.4
30-May-2019 18:09:46 ---> Using cache
30-May-2019 18:09:46 ---> c98c56290cba
30-May-2019 18:09:46 Step 5/7 : WORKDIR /src
30-May-2019 18:09:46 ---> Using cache
30-May-2019 18:09:46 ---> e913ab5e48c6
30-May-2019 18:09:46 Step 6/7 : COPY monitor.py /src/
30-May-2019 18:09:46 ---> Using cache
30-May-2019 18:09:46 ---> 967411183950
30-May-2019 18:09:46 Step 7/7 : CMD python monitor.py
30-May-2019 18:09:46 ---> Using cache
30-May-2019 18:09:46 ---> bcf6c5a97b9a
30-May-2019 18:09:46 Successfully built bcf6c5a97b9a
30-May-2019 18:09:46 Successfully tagged clowder/extractors-monitor:latest
30-May-2019 18:09:46 Finished task 'docker build' with result: Success
30-May-2019 18:09:46 Starting task 'docker push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
30-May-2019 18:09:46
Beginning to execute external process for build 'Clowder - pyclowder2 - develop - Default Job #25 (CATS-PYC265-JOB1-25)'
... running command line:
/bin/sh release.sh
... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1
... using extra environment variables:
bamboo_planRepository_1_branch=develop
bamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm
bamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster
bamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node
bamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster
bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster
bamboo_planRepository_1_branchDisplayName=develop
bamboo_repository_revision_number=ff430c1c1f9ec22e7981cf9e6e7037663506ed70
bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC265-JOB1-25
bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build
bamboo_repository_157745161_name=pyclowder2
bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1
bamboo_planRepository_1_name=pyclowder2
bamboo_buildKey=CATS-PYC265-JOB1
bamboo_capability_system_os=linux
bamboo_shortPlanName=develop
bamboo_repository_157745161_branch_name=develop
bamboo_planRepository_name=pyclowder2
bamboo_buildNumber=25
bamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt
bamboo_shortJobName=Default Job
bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC265-JOB1-25
bamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git
bamboo_agentId=140673027
bamboo_planName=Clowder - pyclowder2 - develop
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_6=/home/bamboo/bamboo-agent-home/temp/CATS-PYC265-JOB1-25-ScriptBuildTask-5392254568149523133.sh
bamboo_shortPlanKey=PYC265
bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt
bamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node
bamboo_shortJobKey=JOB1
bamboo_planRepository_revision=ff430c1c1f9ec22e7981cf9e6e7037663506ed70
bamboo_buildTimeStamp=2019-05-30T18:03:45.083-05:00
bamboo_repository_previous_revision_number=8c97747b1d0882a0524eb5885c4f82791a45c25d
bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm
bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1
bamboo_repository_157745161_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_3=/home/bamboo/bamboo-agent-home/temp/CATS-PYC265-JOB1-25-ScriptBuildTask-9045303233299508899.sh
bamboo_planRepository_previousRevision=8c97747b1d0882a0524eb5885c4f82791a45c25d
bamboo_repository_157745161_git_username=
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_2=/bin/sh docker.sh
bamboo_repository_git_branch=develop
bamboo_buildResultKey=CATS-PYC265-JOB1-25
bamboo_repository_branch_name=develop
bamboo_buildPlanName=Clowder - pyclowder2 - develop - Default Job
bamboo_planRepository_1_revision=ff430c1c1f9ec22e7981cf9e6e7037663506ed70
bamboo_capability_system_builder_command_python3=/usr/bin/python3
bamboo_repository_name=pyclowder2
bamboo_buildFailed=false
bamboo_repository_157745161_git_branch=develop
bamboo_capability_system_docker_executable=/usr/bin/docker
bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt
bamboo_planRepository_branch=develop
bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir
bamboo_repository_157745161_previous_revision_number=8c97747b1d0882a0524eb5885c4f82791a45c25d
bamboo_capability_system_git_executable=/usr/bin/git
bamboo_repository_git_username=
bamboo_planRepository_1_previousRevision=8c97747b1d0882a0524eb5885c4f82791a45c25d
bamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13
bamboo_planRepository_branchDisplayName=develop
bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs
bamboo_planRepository_1_type=bbserver
bamboo_planRepository_branchName=develop
bamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7
bamboo_capability_system_hostname=buildserver-1
bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66
bamboo_capability_system_software_mongo=/usr/bin/mongo
bamboo_plan_storageTag=plan-157548561
bamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache
bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs
bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl
bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66
bamboo_planRepository_1_username=
bamboo_planRepository_type=bbserver
bamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache
bamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git
bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node
bamboo_repository_157745161_revision_number=ff430c1c1f9ec22e7981cf9e6e7037663506ed70
bamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4
bamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9
bamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp
bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1
bamboo_planKey=CATS-PYC265
bamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git
bamboo_planRepository_username=
bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66
bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41
bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh
bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60
bamboo_planRepository_1_branchName=develop
30-May-2019 18:09:46 Sending build context to Docker daemon  282.1kB
30-May-2019 18:09:46
30-May-2019 18:09:46 Step 1/9 : FROM ubuntu:16.04
30-May-2019 18:09:46 ---> 2a697363a870
30-May-2019 18:09:46 Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F"     RABBITMQ_EXCHANGE="clowder"     RABBITMQ_QUEUE=""     REGISTRATION_ENDPOINTS=""     EMAIL_SERVER=""     EMAIL_SENDER="extractor"     MAIN_SCRIPT=""
30-May-2019 18:09:46 ---> Using cache
30-May-2019 18:09:46 ---> 272a7d5128c9
30-May-2019 18:09:46 Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends         python         python-pip     && pip install --upgrade setuptools     && rm -rf /var/lib/apt/lists/*
30-May-2019 18:09:46 ---> Using cache
30-May-2019 18:09:46 ---> c4e7a6964674
30-May-2019 18:09:46 Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder
30-May-2019 18:09:46 ---> Using cache
30-May-2019 18:09:46 ---> 1914b71b0a62
30-May-2019 18:09:46 Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/
30-May-2019 18:09:46 ---> Using cache
30-May-2019 18:09:46 ---> d299eee00ea5
30-May-2019 18:09:46 Step 6/9 : RUN pip install --upgrade /tmp/pyclowder     && rm -rf /tmp/pyclowder
30-May-2019 18:09:46 ---> Using cache
30-May-2019 18:09:46 ---> fae4549be034
30-May-2019 18:09:46 Step 7/9 : WORKDIR /home/clowder
30-May-2019 18:09:46 ---> Using cache
30-May-2019 18:09:46 ---> 8ce0d3a12fee
30-May-2019 18:09:46 Step 8/9 : COPY notifications.json /home/clowder
30-May-2019 18:09:46 ---> Using cache
30-May-2019 18:09:46 ---> d14032f0c406
30-May-2019 18:09:46 Step 9/9 : CMD python "./${MAIN_SCRIPT}"
30-May-2019 18:09:46 ---> Using cache
30-May-2019 18:09:46 ---> 478bcb4d8a17
30-May-2019 18:09:46 Successfully built 478bcb4d8a17
30-May-2019 18:09:47 Successfully tagged clowder/pyclowder:latest
30-May-2019 18:09:47 Sending build context to Docker daemon  280.6kB
30-May-2019 18:09:47
30-May-2019 18:09:47 Step 1/6 : FROM clowder/pyclowder
30-May-2019 18:09:47 ---> 478bcb4d8a17
30-May-2019 18:09:47 Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> 4c01a6dd50c3
30-May-2019 18:09:47 Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> 83f69260f77f
30-May-2019 18:09:47 Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> 520f221895f7
30-May-2019 18:09:47 Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then                 pip install --no-cache-dir -r requirements.txt;             fi
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> 267687c15590
30-May-2019 18:09:47 Step 6/6 : ONBUILD ADD . /home/clowder/
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> 5ef86390e095
30-May-2019 18:09:47 Successfully built 5ef86390e095
30-May-2019 18:09:47 Successfully tagged clowder/pyclowder:onbuild
30-May-2019 18:09:47 Sending build context to Docker daemon   12.8kB
30-May-2019 18:09:47
30-May-2019 18:09:47 Step 1/5 : FROM clowder/pyclowder:onbuild
30-May-2019 18:09:47 # Executing 5 build triggers
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> f51d502d5d5d
30-May-2019 18:09:47 Step 2/5 : ENV MAIN_SCRIPT="binary_extractor.py"     RABBITMQ_QUEUE=""     IMAGE_BINARY=""     IMAGE_TYPE=""     IMAGE_THUMBNAIL_COMMAND=""     IMAGE_PREVIEW_COMMAND=""     PREVIEW_BINARY=""     PREVIEW_TYPE=""     PREVIEW_COMMAND=""
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> 5337f9a21ecb
30-May-2019 18:09:47 Step 3/5 : ONBUILD COPY packages.* Dockerfile /home/clowder/
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> ac84346d5d3e
30-May-2019 18:09:47 Step 4/5 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> 308bbd3bca7b
30-May-2019 18:09:47 Step 5/5 : ONBUILD COPY extractor_info.json /home/clowder/
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> 4a67b4255515
30-May-2019 18:09:47 Successfully built 4a67b4255515
30-May-2019 18:09:47 Successfully tagged clowder/extractors-binary-preview:onbuild
30-May-2019 18:09:47 Sending build context to Docker daemon  6.656kB
30-May-2019 18:09:47
30-May-2019 18:09:47 Step 1/9 : FROM clowder/pyclowder:onbuild
30-May-2019 18:09:47 # Executing 5 build triggers
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> b756630b8828
30-May-2019 18:09:47 Step 2/9 : ENV EXTRACTION_FUNC=""
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> d138c1478b88
30-May-2019 18:09:47 Step 3/9 : ENV EXTRACTION_MODULE=""
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> d7219ac97f01
30-May-2019 18:09:47 Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> 4ea0f3adfe66
30-May-2019 18:09:47 Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> e8d8fa4524e9
30-May-2019 18:09:47 Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> d59eb53aa212
30-May-2019 18:09:47 Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then                 pip install --no-cache-dir -r requirements.txt;             fi
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> a31ec045df10
30-May-2019 18:09:47 Step 8/9 : ONBUILD ADD . /home/clowder/
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> d9f24008b3fb
30-May-2019 18:09:47 Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()"
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> 1380bafb2ffb
30-May-2019 18:09:47 Successfully built 1380bafb2ffb
30-May-2019 18:09:47 Successfully tagged clowder/extractors-simple-extractor:onbuild
30-May-2019 18:09:47 Sending build context to Docker daemon  13.31kB
30-May-2019 18:09:47
30-May-2019 18:09:47 Step 1/10 : FROM clowder/pyclowder:latest
30-May-2019 18:09:47 ---> 478bcb4d8a17
30-May-2019 18:09:47 Step 2/10 : ENV R_SCRIPT=""     R_FUNCTION=""
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> 9a608bb66aa1
30-May-2019 18:09:47 Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list     && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9     && apt-get -q -q update     && apt-get -y install --no-install-recommends r-base-core r-base-dev     && rm -rf /var/lib/apt/lists/*     && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))"
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> 446847f6b800
30-May-2019 18:09:47 Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> c9002915a766
30-May-2019 18:09:47 Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> 3054c2813815
30-May-2019 18:09:47 Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> ca316fb12fd0
30-May-2019 18:09:47 Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> e09852837a36
30-May-2019 18:09:47 Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then                 Rscript docker.R;             fi
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> 771f43b44eb9
30-May-2019 18:09:47 Step 9/10 : ONBUILD ADD . /home/clowder/
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> bb02dd312471
30-May-2019 18:09:47 Step 10/10 : CMD python r_extractor.py
30-May-2019 18:09:47 ---> Using cache
30-May-2019 18:09:47 ---> c63dd785160d
30-May-2019 18:09:47 Successfully built c63dd785160d
30-May-2019 18:09:47 Successfully tagged clowder/extractors-simple-r-extractor:onbuild
30-May-2019 18:09:47 Sending build context to Docker daemon  282.1kB
30-May-2019 18:09:47
30-May-2019 18:09:48 Step 1/9 : FROM ubuntu:16.04
30-May-2019 18:09:48 ---> 2a697363a870
30-May-2019 18:09:48 Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F"     RABBITMQ_EXCHANGE="clowder"     RABBITMQ_QUEUE=""     REGISTRATION_ENDPOINTS=""     EMAIL_SERVER=""     EMAIL_SENDER="extractor"     MAIN_SCRIPT=""
30-May-2019 18:09:48 ---> Using cache
30-May-2019 18:09:48 ---> 272a7d5128c9
30-May-2019 18:09:48 Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends         python         python-pip     && pip install --upgrade setuptools     && rm -rf /var/lib/apt/lists/*
30-May-2019 18:09:48 ---> Using cache
30-May-2019 18:09:48 ---> c4e7a6964674
30-May-2019 18:09:48 Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder
30-May-2019 18:09:48 ---> Using cache
30-May-2019 18:09:48 ---> 1914b71b0a62
30-May-2019 18:09:48 Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/
30-May-2019 18:09:48 ---> Using cache
30-May-2019 18:09:48 ---> d299eee00ea5
30-May-2019 18:09:48 Step 6/9 : RUN pip install --upgrade /tmp/pyclowder     && rm -rf /tmp/pyclowder
30-May-2019 18:09:48 ---> Using cache
30-May-2019 18:09:48 ---> fae4549be034
30-May-2019 18:09:48 Step 7/9 : WORKDIR /home/clowder
30-May-2019 18:09:48 ---> Using cache
30-May-2019 18:09:48 ---> 8ce0d3a12fee
30-May-2019 18:09:48 Step 8/9 : COPY notifications.json /home/clowder
30-May-2019 18:09:48 ---> Using cache
30-May-2019 18:09:48 ---> d14032f0c406
30-May-2019 18:09:48 Step 9/9 : CMD python "./${MAIN_SCRIPT}"
30-May-2019 18:09:48 ---> Using cache
30-May-2019 18:09:48 ---> 478bcb4d8a17
30-May-2019 18:09:48 [Warning] One or more build-args [PYTHON_VERSION] were not consumed
30-May-2019 18:09:48 Successfully built 478bcb4d8a17
30-May-2019 18:09:48 Successfully tagged clowder/pyclowder-python3:latest
30-May-2019 18:09:48 Sending build context to Docker daemon  280.6kB
30-May-2019 18:09:48
30-May-2019 18:09:48 Step 1/6 : FROM clowder/pyclowder
30-May-2019 18:09:48 ---> 478bcb4d8a17
30-May-2019 18:09:48 Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/
30-May-2019 18:09:48 ---> Using cache
30-May-2019 18:09:48 ---> 4c01a6dd50c3
30-May-2019 18:09:48 Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
30-May-2019 18:09:48 ---> Using cache
30-May-2019 18:09:48 ---> 83f69260f77f
30-May-2019 18:09:48 Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/
30-May-2019 18:09:48 ---> Using cache
30-May-2019 18:09:48 ---> 520f221895f7
30-May-2019 18:09:48 Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then                 pip install --no-cache-dir -r requirements.txt;             fi
30-May-2019 18:09:48 ---> Using cache
30-May-2019 18:09:48 ---> 267687c15590
30-May-2019 18:09:48 Step 6/6 : ONBUILD ADD . /home/clowder/
30-May-2019 18:09:48 ---> Using cache
30-May-2019 18:09:48 ---> 5ef86390e095
30-May-2019 18:09:48 [Warning] One or more build-args [PYTHON_VERSION] were not consumed
30-May-2019 18:09:48 Successfully built 5ef86390e095
30-May-2019 18:09:48 Successfully tagged clowder/pyclowder-python3:onbuild
30-May-2019 18:09:48 Sending build context to Docker daemon  6.656kB
30-May-2019 18:09:48
30-May-2019 18:09:48 Step 1/9 : FROM clowder/pyclowder:onbuild
30-May-2019 18:09:48 # Executing 5 build triggers
30-May-2019 18:09:48 ---> Using cache
30-May-2019 18:09:48 ---> Using cache
30-May-2019 18:09:48 ---> Using cache
30-May-2019 18:09:48 ---> Using cache
30-May-2019 18:09:48 ---> Using cache
30-May-2019 18:09:48 ---> b756630b8828
30-May-2019 18:09:48 Step 2/9 : ENV EXTRACTION_FUNC=""
30-May-2019 18:09:48 ---> Using cache
30-May-2019 18:09:48 ---> d138c1478b88
30-May-2019 18:09:48 Step 3/9 : ENV EXTRACTION_MODULE=""
30-May-2019 18:09:48 ---> Using cache
30-May-2019 18:09:48 ---> d7219ac97f01
30-May-2019 18:09:48 Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/
30-May-2019 18:09:48 ---> Using cache
30-May-2019 18:09:48 ---> 4ea0f3adfe66
30-May-2019 18:09:48 Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
30-May-2019 18:09:48 ---> Using cache
30-May-2019 18:09:48 ---> e8d8fa4524e9
30-May-2019 18:09:48 Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/
30-May-2019 18:09:48 ---> Using cache
30-May-2019 18:09:48 ---> d59eb53aa212
30-May-2019 18:09:48 Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then                 pip install --no-cache-dir -r requirements.txt;             fi
30-May-2019 18:09:48 ---> Using cache
30-May-2019 18:09:48 ---> a31ec045df10
30-May-2019 18:09:48 Step 8/9 : ONBUILD ADD . /home/clowder/
30-May-2019 18:09:48 ---> Using cache
30-May-2019 18:09:48 ---> d9f24008b3fb
30-May-2019 18:09:48 Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()"
30-May-2019 18:09:48 ---> Using cache
30-May-2019 18:09:48 ---> 1380bafb2ffb
30-May-2019 18:09:48 [Warning] One or more build-args [PYTHON_VERSION] were not consumed
30-May-2019 18:09:48 Successfully built 1380bafb2ffb
30-May-2019 18:09:48 Successfully tagged clowder/extractors-simple-extractor-python3:onbuild
30-May-2019 18:09:48 Sending build context to Docker daemon  13.31kB
30-May-2019 18:09:48
30-May-2019 18:09:49 Step 1/10 : FROM clowder/pyclowder:latest
30-May-2019 18:09:49 ---> 478bcb4d8a17
30-May-2019 18:09:49 Step 2/10 : ENV R_SCRIPT=""     R_FUNCTION=""
30-May-2019 18:09:49 ---> Using cache
30-May-2019 18:09:49 ---> 9a608bb66aa1
30-May-2019 18:09:49 Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list     && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9     && apt-get -q -q update     && apt-get -y install --no-install-recommends r-base-core r-base-dev     && rm -rf /var/lib/apt/lists/*     && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))"
30-May-2019 18:09:49 ---> Using cache
30-May-2019 18:09:49 ---> 446847f6b800
30-May-2019 18:09:49 Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/
30-May-2019 18:09:49 ---> Using cache
30-May-2019 18:09:49 ---> c9002915a766
30-May-2019 18:09:49 Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/
30-May-2019 18:09:49 ---> Using cache
30-May-2019 18:09:49 ---> 3054c2813815
30-May-2019 18:09:49 Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
30-May-2019 18:09:49 ---> Using cache
30-May-2019 18:09:49 ---> ca316fb12fd0
30-May-2019 18:09:49 Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/
30-May-2019 18:09:49 ---> Using cache
30-May-2019 18:09:49 ---> e09852837a36
30-May-2019 18:09:49 Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then                 Rscript docker.R;             fi
30-May-2019 18:09:49 ---> Using cache
30-May-2019 18:09:49 ---> 771f43b44eb9
30-May-2019 18:09:49 Step 9/10 : ONBUILD ADD . /home/clowder/
30-May-2019 18:09:49 ---> Using cache
30-May-2019 18:09:49 ---> bb02dd312471
30-May-2019 18:09:49 Step 10/10 : CMD python r_extractor.py
30-May-2019 18:09:49 ---> Using cache
30-May-2019 18:09:49 ---> c63dd785160d
30-May-2019 18:09:49 [Warning] One or more build-args [PYTHON_VERSION] were not consumed
30-May-2019 18:09:49 Successfully built c63dd785160d
30-May-2019 18:09:49 Successfully tagged clowder/extractors-simple-r-extractor-python3:onbuild
30-May-2019 18:09:49 Sending build context to Docker daemon  9.216kB
30-May-2019 18:09:49
30-May-2019 18:09:49 Step 1/2 : FROM clowder/pyclowder:onbuild
30-May-2019 18:09:49 # Executing 5 build triggers
30-May-2019 18:09:49 ---> Using cache
30-May-2019 18:09:49 ---> Using cache
30-May-2019 18:09:49 ---> Using cache
30-May-2019 18:09:49 ---> Using cache
30-May-2019 18:09:49 ---> Using cache
30-May-2019 18:09:49 ---> c69bb69b8bae
30-May-2019 18:09:49 Step 2/2 : ENV MAIN_SCRIPT="wordcount.py"
30-May-2019 18:09:49 ---> Using cache
30-May-2019 18:09:49 ---> c78f140f60ae
30-May-2019 18:09:49 Successfully built c78f140f60ae
30-May-2019 18:09:49 Successfully tagged clowder/extractors-wordcount:latest
30-May-2019 18:09:49 Sending build context to Docker daemon   5.12kB
30-May-2019 18:09:49
30-May-2019 18:09:49 Step 1/3 : FROM clowder/extractors-simple-extractor:onbuild
30-May-2019 18:09:49 # Executing 5 build triggers
30-May-2019 18:09:49 ---> Using cache
30-May-2019 18:09:49 ---> Using cache
30-May-2019 18:09:49 ---> Using cache
30-May-2019 18:09:49 ---> Using cache
30-May-2019 18:09:49 ---> Using cache
30-May-2019 18:09:49 ---> 74f8d3096a74
30-May-2019 18:09:49 Step 2/3 : ENV EXTRACTION_FUNC="wordcount"
30-May-2019 18:09:49 ---> Using cache
30-May-2019 18:09:49 ---> db8b8b452123
30-May-2019 18:09:49 Step 3/3 : ENV EXTRACTION_MODULE="wordcount"
30-May-2019 18:09:49 ---> Using cache
30-May-2019 18:09:49 ---> aad72837cc6d
30-May-2019 18:09:49 Successfully built aad72837cc6d
30-May-2019 18:09:49 Successfully tagged clowder/extractors-wordcount-simple-extractor:latest
30-May-2019 18:09:49 Sending build context to Docker daemon   5.12kB
30-May-2019 18:09:49
30-May-2019 18:09:49 Step 1/2 : FROM clowder/extractors-simple-r-extractor:onbuild
30-May-2019 18:09:49 # Executing 5 build triggers
30-May-2019 18:09:49 ---> Using cache
30-May-2019 18:09:49 ---> Using cache
30-May-2019 18:09:49 ---> Using cache
30-May-2019 18:09:49 ---> Using cache
30-May-2019 18:09:49 ---> Using cache
30-May-2019 18:09:49 ---> 5226ce846d96
30-May-2019 18:09:49 Step 2/2 : ENV R_SCRIPT="wordcount.R"     R_FUNCTION="process_file"
30-May-2019 18:09:49 ---> Using cache
30-May-2019 18:09:49 ---> d31f366f931b
30-May-2019 18:09:49 Successfully built d31f366f931b
30-May-2019 18:09:49 Successfully tagged clowder/extractors-wordcount-simple-r-extractor:latest
30-May-2019 18:09:50 Sending build context to Docker daemon  8.192kB
30-May-2019 18:09:50
30-May-2019 18:09:50 Step 1/7 : FROM python:3.5
30-May-2019 18:09:50 ---> 74a0040526f9
30-May-2019 18:09:50 Step 2/7 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq/%2F"
30-May-2019 18:09:50 ---> Using cache
30-May-2019 18:09:50 ---> 0f4f82f9baad
30-May-2019 18:09:50 Step 3/7 : EXPOSE 9999
30-May-2019 18:09:50 ---> Using cache
30-May-2019 18:09:50 ---> c3ca695b477b
30-May-2019 18:09:50 Step 4/7 : RUN pip install pika==0.11.2 requests==2.18.4
30-May-2019 18:09:50 ---> Using cache
30-May-2019 18:09:50 ---> c98c56290cba
30-May-2019 18:09:50 Step 5/7 : WORKDIR /src
30-May-2019 18:09:50 ---> Using cache
30-May-2019 18:09:50 ---> e913ab5e48c6
30-May-2019 18:09:50 Step 6/7 : COPY monitor.py /src/
30-May-2019 18:09:50 ---> Using cache
30-May-2019 18:09:50 ---> 967411183950
30-May-2019 18:09:50 Step 7/7 : CMD python monitor.py
30-May-2019 18:09:50 ---> Using cache
30-May-2019 18:09:50 ---> bcf6c5a97b9a
30-May-2019 18:09:50 Successfully built bcf6c5a97b9a
30-May-2019 18:09:50 Successfully tagged clowder/extractors-monitor:latest
30-May-2019 18:09:50 The push refers to repository [docker.io/clowder/pyclowder]
30-May-2019 18:09:50 c556b01a6be9: Preparing
30-May-2019 18:09:50 0e0528e3d3e8: Preparing
30-May-2019 18:09:50 96c496920a5d: Preparing
30-May-2019 18:09:50 2807d2a6b7c5: Preparing
30-May-2019 18:09:50 d08682a2564e: Preparing
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30-May-2019 18:09:50 49652298c779: Preparing
30-May-2019 18:09:50 e15278fcccca: Preparing
30-May-2019 18:09:50 739482a9723d: Preparing
30-May-2019 18:09:50 000245f83ac1: Waiting
30-May-2019 18:09:50 4c54072a5034: Waiting
30-May-2019 18:09:50 49652298c779: Waiting
30-May-2019 18:09:50 e15278fcccca: Waiting
30-May-2019 18:09:50 739482a9723d: Waiting
30-May-2019 18:09:52 c556b01a6be9: Pushed
30-May-2019 18:09:52 d08682a2564e: Pushed
30-May-2019 18:09:52 2807d2a6b7c5: Pushed
30-May-2019 18:09:52 0e0528e3d3e8: Pushed
30-May-2019 18:09:52 96c496920a5d: Pushed
30-May-2019 18:09:53 4c54072a5034: Mounted from clowder/mongo-init
30-May-2019 18:09:54 49652298c779: Mounted from clowder/mongo-init
30-May-2019 18:09:54 739482a9723d: Mounted from clowder/mongo-init
30-May-2019 18:09:54 e15278fcccca: Mounted from clowder/mongo-init
30-May-2019 18:09:56 000245f83ac1: Pushed
30-May-2019 18:09:59 develop: digest: sha256:5032a8daf88c4642a9ac762424c4fe8ef7eec04148e38697da16800c75e4f268 size: 2404
30-May-2019 18:09:59 The push refers to repository [docker.io/clowder/pyclowder-python3]
30-May-2019 18:09:59 c556b01a6be9: Preparing
30-May-2019 18:09:59 0e0528e3d3e8: Preparing
30-May-2019 18:09:59 96c496920a5d: Preparing
30-May-2019 18:09:59 2807d2a6b7c5: Preparing
30-May-2019 18:09:59 d08682a2564e: Preparing
30-May-2019 18:09:59 000245f83ac1: Preparing
30-May-2019 18:09:59 4c54072a5034: Preparing
30-May-2019 18:09:59 49652298c779: Preparing
30-May-2019 18:09:59 e15278fcccca: Preparing
30-May-2019 18:09:59 739482a9723d: Preparing
30-May-2019 18:09:59 000245f83ac1: Waiting
30-May-2019 18:09:59 4c54072a5034: Waiting
30-May-2019 18:09:59 49652298c779: Waiting
30-May-2019 18:09:59 e15278fcccca: Waiting
30-May-2019 18:09:59 739482a9723d: Waiting
30-May-2019 18:10:00 2807d2a6b7c5: Mounted from clowder/pyclowder
30-May-2019 18:10:00 c556b01a6be9: Mounted from clowder/pyclowder
30-May-2019 18:10:00 0e0528e3d3e8: Mounted from clowder/pyclowder
30-May-2019 18:10:00 d08682a2564e: Mounted from clowder/pyclowder
30-May-2019 18:10:00 96c496920a5d: Mounted from clowder/pyclowder
30-May-2019 18:10:01 000245f83ac1: Mounted from clowder/pyclowder
30-May-2019 18:10:01 4c54072a5034: Mounted from clowder/pyclowder
30-May-2019 18:10:01 49652298c779: Mounted from clowder/pyclowder
30-May-2019 18:10:02 739482a9723d: Mounted from clowder/pyclowder
30-May-2019 18:10:02 e15278fcccca: Mounted from clowder/pyclowder
30-May-2019 18:10:04 develop: digest: sha256:5032a8daf88c4642a9ac762424c4fe8ef7eec04148e38697da16800c75e4f268 size: 2404
30-May-2019 18:10:04 The push refers to repository [docker.io/clowder/extractors-monitor]
30-May-2019 18:10:04 c980d02dc0b8: Preparing
30-May-2019 18:10:04 10089a3c6e94: Preparing
30-May-2019 18:10:04 a9a982d3e6fe: Preparing
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30-May-2019 18:10:04 910d7fd9e23e: Preparing
30-May-2019 18:10:04 4230ff7f2288: Preparing
30-May-2019 18:10:04 2c719774c1e1: Preparing
30-May-2019 18:10:04 ec62f19bb3aa: Preparing
30-May-2019 18:10:04 f94641f1fe1f: Preparing
30-May-2019 18:10:04 1c4010f9b43f: Waiting
30-May-2019 18:10:04 4e1d0b4d1868: Waiting
30-May-2019 18:10:04 910d7fd9e23e: Waiting
30-May-2019 18:10:04 4230ff7f2288: Waiting
30-May-2019 18:10:04 2c719774c1e1: Waiting
30-May-2019 18:10:04 ec62f19bb3aa: Waiting
30-May-2019 18:10:04 f94641f1fe1f: Waiting
30-May-2019 18:10:05 4635479b1503: Mounted from library/python
30-May-2019 18:10:05 3faf9bad0f26: Mounted from library/python
30-May-2019 18:10:06 10089a3c6e94: Pushed
30-May-2019 18:10:06 1c4010f9b43f: Mounted from library/python
30-May-2019 18:10:06 c980d02dc0b8: Pushed
30-May-2019 18:10:06 4e1d0b4d1868: Mounted from library/python
30-May-2019 18:10:07 910d7fd9e23e: Mounted from library/python
30-May-2019 18:10:07 2c719774c1e1: Mounted from library/python
30-May-2019 18:10:07 4230ff7f2288: Mounted from library/python
30-May-2019 18:10:07 a9a982d3e6fe: Pushed
30-May-2019 18:10:07 ec62f19bb3aa: Mounted from library/python
30-May-2019 18:10:08 f94641f1fe1f: Mounted from library/python
30-May-2019 18:10:11 develop: digest: sha256:21ceaed7a9d71b6a4fa69956b45430462b83d1a03c01bf83ec4906a83feed483 size: 2843
30-May-2019 18:10:11 The push refers to repository [docker.io/clowder/extractors-wordcount]
30-May-2019 18:10:11 50c71e6b8eb6: Preparing
30-May-2019 18:10:11 ff867973a387: Preparing
30-May-2019 18:10:11 6916077f2bc6: Preparing
30-May-2019 18:10:11 c556b01a6be9: Preparing
30-May-2019 18:10:11 0e0528e3d3e8: Preparing
30-May-2019 18:10:11 96c496920a5d: Preparing
30-May-2019 18:10:11 2807d2a6b7c5: Preparing
30-May-2019 18:10:11 d08682a2564e: Preparing
30-May-2019 18:10:11 000245f83ac1: Preparing
30-May-2019 18:10:11 4c54072a5034: Preparing
30-May-2019 18:10:11 49652298c779: Preparing
30-May-2019 18:10:11 e15278fcccca: Preparing
30-May-2019 18:10:11 739482a9723d: Preparing
30-May-2019 18:10:11 000245f83ac1: Waiting
30-May-2019 18:10:11 4c54072a5034: Waiting
30-May-2019 18:10:11 49652298c779: Waiting
30-May-2019 18:10:11 e15278fcccca: Waiting
30-May-2019 18:10:11 96c496920a5d: Waiting
30-May-2019 18:10:11 2807d2a6b7c5: Waiting
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30-May-2019 18:10:34 The push refers to repository [docker.io/clowder/extractors-simple-extractor]
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30-May-2019 18:10:41 The push refers to repository [docker.io/clowder/extractors-simple-extractor-python3]
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30-May-2019 18:10:47 The push refers to repository [docker.io/clowder/extractors-simple-r-extractor]
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30-May-2019 18:11:17 The push refers to repository [docker.io/clowder/extractors-simple-r-extractor-python3]
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30-May-2019 18:11:23 Finished task 'docker push' with result: Success
30-May-2019 18:11:23 Starting task 'test results' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit'
30-May-2019 18:11:23 Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1...
30-May-2019 18:11:23 Finished task 'test results' with result: Success
30-May-2019 18:11:23 Running post build plugin 'Docker Container Cleanup'
30-May-2019 18:11:23 Running post build plugin 'NCover Results Collector'
30-May-2019 18:11:23 Running post build plugin 'Clover Results Collector'
30-May-2019 18:11:23 Running post build plugin 'npm Cache Cleanup'
30-May-2019 18:11:23 Running post build plugin 'Artifact Copier'
30-May-2019 18:11:23 Finalising the build...
30-May-2019 18:11:23 Stopping timer.
30-May-2019 18:11:23 Build CATS-PYC265-JOB1-25 completed.
30-May-2019 18:11:23 Running on server: post build plugin 'NCover Results Collector'
30-May-2019 18:11:23 Running on server: post build plugin 'Build Hanging Detection Configuration'
30-May-2019 18:11:23 Running on server: post build plugin 'Clover Delta Calculator'
30-May-2019 18:11:23 Running on server: post build plugin 'Maven Dependencies Postprocessor'
30-May-2019 18:11:23 All post build plugins have finished
30-May-2019 18:11:23 Generating build results summary...
30-May-2019 18:11:23 Saving build results to disk...
30-May-2019 18:11:23 Logging substituted variables...
30-May-2019 18:11:23 Indexing build results...
30-May-2019 18:11:23 Finished building CATS-PYC265-JOB1-25.