Build: #2 was successful
Job: Default Job was successful
Build log
The build generated 2,335 lines of output. The output is too long and has been truncated to the last 1,000 lines. Download or view full build log.
| 30-May-2019 23:25:05 | Preparing to unpack .../libcurl3_7.47.0-1ubuntu2.13_amd64.deb ... |
| 30-May-2019 23:25:05 | Unpacking libcurl3:amd64 (7.47.0-1ubuntu2.13) ... |
| 30-May-2019 23:25:05 | Selecting previously unselected package libdatrie1:amd64. |
| 30-May-2019 23:25:05 | Preparing to unpack .../libdatrie1_0.2.10-2_amd64.deb ... |
| 30-May-2019 23:25:05 | Unpacking libdatrie1:amd64 (0.2.10-2) ... |
| 30-May-2019 23:25:06 | Selecting previously unselected package libgraphite2-3:amd64. |
| 30-May-2019 23:25:06 | Preparing to unpack .../libgraphite2-3_1.3.10-0ubuntu0.16.04.1_amd64.deb ... |
| 30-May-2019 23:25:06 | Unpacking libgraphite2-3:amd64 (1.3.10-0ubuntu0.16.04.1) ... |
| 30-May-2019 23:25:06 | Selecting previously unselected package libharfbuzz0b:amd64. |
| 30-May-2019 23:25:06 | Preparing to unpack .../libharfbuzz0b_1.0.1-1ubuntu0.1_amd64.deb ... |
| 30-May-2019 23:25:06 | Unpacking libharfbuzz0b:amd64 (1.0.1-1ubuntu0.1) ... |
| 30-May-2019 23:25:07 | Selecting previously unselected package libicu-dev:amd64. |
| 30-May-2019 23:25:07 | Preparing to unpack .../libicu-dev_55.1-7ubuntu0.4_amd64.deb ... |
| 30-May-2019 23:25:07 | Unpacking libicu-dev:amd64 (55.1-7ubuntu0.4) ... |
| 30-May-2019 23:25:09 | Selecting previously unselected package libjpeg-turbo8-dev:amd64. |
| 30-May-2019 23:25:09 | Preparing to unpack .../libjpeg-turbo8-dev_1.4.2-0ubuntu3.1_amd64.deb ... |
| 30-May-2019 23:25:09 | Unpacking libjpeg-turbo8-dev:amd64 (1.4.2-0ubuntu3.1) ... |
| 30-May-2019 23:25:09 | Selecting previously unselected package libjpeg8:amd64. |
| 30-May-2019 23:25:09 | Preparing to unpack .../libjpeg8_8c-2ubuntu8_amd64.deb ... |
| 30-May-2019 23:25:10 | Unpacking libjpeg8:amd64 (8c-2ubuntu8) ... |
| 30-May-2019 23:25:10 | Selecting previously unselected package libjpeg8-dev:amd64. |
| 30-May-2019 23:25:10 | Preparing to unpack .../libjpeg8-dev_8c-2ubuntu8_amd64.deb ... |
| 30-May-2019 23:25:10 | Unpacking libjpeg8-dev:amd64 (8c-2ubuntu8) ... |
| 30-May-2019 23:25:10 | Selecting previously unselected package libjpeg-dev:amd64. |
| 30-May-2019 23:25:10 | Preparing to unpack .../libjpeg-dev_8c-2ubuntu8_amd64.deb ... |
| 30-May-2019 23:25:10 | Unpacking libjpeg-dev:amd64 (8c-2ubuntu8) ... |
| 30-May-2019 23:25:10 | Selecting previously unselected package liblapack3. |
| 30-May-2019 23:25:10 | Preparing to unpack .../liblapack3_3.6.0-2ubuntu2_amd64.deb ... |
| 30-May-2019 23:25:11 | Unpacking liblapack3 (3.6.0-2ubuntu2) ... |
| 30-May-2019 23:25:12 | Selecting previously unselected package liblapack-dev. |
| 30-May-2019 23:25:12 | Preparing to unpack .../liblapack-dev_3.6.0-2ubuntu2_amd64.deb ... |
| 30-May-2019 23:25:12 | Unpacking liblapack-dev (3.6.0-2ubuntu2) ... |
| 30-May-2019 23:25:13 | Selecting previously unselected package libtinfo-dev:amd64. |
| 30-May-2019 23:25:13 | Preparing to unpack .../libtinfo-dev_6.0+20160213-1ubuntu1_amd64.deb ... |
| 30-May-2019 23:25:13 | Unpacking libtinfo-dev:amd64 (6.0+20160213-1ubuntu1) ... |
| 30-May-2019 23:25:13 | Selecting previously unselected package libncurses5-dev:amd64. |
| 30-May-2019 23:25:13 | Preparing to unpack .../libncurses5-dev_6.0+20160213-1ubuntu1_amd64.deb ... |
| 30-May-2019 23:25:13 | Unpacking libncurses5-dev:amd64 (6.0+20160213-1ubuntu1) ... |
| 30-May-2019 23:25:13 | Selecting previously unselected package libthai-data. |
| 30-May-2019 23:25:13 | Preparing to unpack .../libthai-data_0.1.24-2_all.deb ... |
| 30-May-2019 23:25:14 | Unpacking libthai-data (0.1.24-2) ... |
| 30-May-2019 23:25:14 | Selecting previously unselected package libthai0:amd64. |
| 30-May-2019 23:25:14 | Preparing to unpack .../libthai0_0.1.24-2_amd64.deb ... |
| 30-May-2019 23:25:14 | Unpacking libthai0:amd64 (0.1.24-2) ... |
| 30-May-2019 23:25:14 | Selecting previously unselected package libpango-1.0-0:amd64. |
| 30-May-2019 23:25:14 | Preparing to unpack .../libpango-1.0-0_1.38.1-1_amd64.deb ... |
| 30-May-2019 23:25:14 | Unpacking libpango-1.0-0:amd64 (1.38.1-1) ... |
| 30-May-2019 23:25:16 | Selecting previously unselected package libpangoft2-1.0-0:amd64. |
| 30-May-2019 23:25:16 | Preparing to unpack .../libpangoft2-1.0-0_1.38.1-1_amd64.deb ... |
| 30-May-2019 23:25:16 | Unpacking libpangoft2-1.0-0:amd64 (1.38.1-1) ... |
| 30-May-2019 23:25:16 | Selecting previously unselected package libpangocairo-1.0-0:amd64. |
| 30-May-2019 23:25:16 | Preparing to unpack .../libpangocairo-1.0-0_1.38.1-1_amd64.deb ... |
| 30-May-2019 23:25:16 | Unpacking libpangocairo-1.0-0:amd64 (1.38.1-1) ... |
| 30-May-2019 23:25:17 | Selecting previously unselected package libpaper1:amd64. |
| 30-May-2019 23:25:17 | Preparing to unpack .../libpaper1_1.1.24+nmu4ubuntu1_amd64.deb ... |
| 30-May-2019 23:25:17 | Unpacking libpaper1:amd64 (1.1.24+nmu4ubuntu1) ... |
| 30-May-2019 23:25:17 | Selecting previously unselected package libpaper-utils. |
| 30-May-2019 23:25:17 | Preparing to unpack .../libpaper-utils_1.1.24+nmu4ubuntu1_amd64.deb ... |
| 30-May-2019 23:25:17 | Unpacking libpaper-utils (1.1.24+nmu4ubuntu1) ... |
| 30-May-2019 23:25:17 | Selecting previously unselected package libpcre16-3:amd64. |
| 30-May-2019 23:25:17 | Preparing to unpack .../libpcre16-3_2%3a8.38-3.1_amd64.deb ... |
| 30-May-2019 23:25:17 | Unpacking libpcre16-3:amd64 (2:8.38-3.1) ... |
| 30-May-2019 23:25:18 | Selecting previously unselected package libpcre32-3:amd64. |
| 30-May-2019 23:25:18 | Preparing to unpack .../libpcre32-3_2%3a8.38-3.1_amd64.deb ... |
| 30-May-2019 23:25:18 | Unpacking libpcre32-3:amd64 (2:8.38-3.1) ... |
| 30-May-2019 23:25:18 | Selecting previously unselected package libpcre3-dev:amd64. |
| 30-May-2019 23:25:18 | Preparing to unpack .../libpcre3-dev_2%3a8.38-3.1_amd64.deb ... |
| 30-May-2019 23:25:18 | Unpacking libpcre3-dev:amd64 (2:8.38-3.1) ... |
| 30-May-2019 23:25:19 | Selecting previously unselected package zlib1g-dev:amd64. |
| 30-May-2019 23:25:19 | Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2ubuntu4.1_amd64.deb ... |
| 30-May-2019 23:25:19 | Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4.1) ... |
| 30-May-2019 23:25:20 | Selecting previously unselected package libpng12-dev:amd64. |
| 30-May-2019 23:25:20 | Preparing to unpack .../libpng12-dev_1.2.54-1ubuntu1.1_amd64.deb ... |
| 30-May-2019 23:25:20 | Unpacking libpng12-dev:amd64 (1.2.54-1ubuntu1.1) ... |
| 30-May-2019 23:25:20 | Selecting previously unselected package libreadline6-dev:amd64. |
| 30-May-2019 23:25:20 | Preparing to unpack .../libreadline6-dev_6.3-8ubuntu2_amd64.deb ... |
| 30-May-2019 23:25:20 | Unpacking libreadline6-dev:amd64 (6.3-8ubuntu2) ... |
| 30-May-2019 23:25:21 | Selecting previously unselected package libreadline-dev:amd64. |
| 30-May-2019 23:25:21 | Preparing to unpack .../libreadline-dev_6.3-8ubuntu2_amd64.deb ... |
| 30-May-2019 23:25:21 | Unpacking libreadline-dev:amd64 (6.3-8ubuntu2) ... |
| 30-May-2019 23:25:21 | Selecting previously unselected package libtcl8.6:amd64. |
| 30-May-2019 23:25:21 | Preparing to unpack .../libtcl8.6_8.6.5+dfsg-2_amd64.deb ... |
| 30-May-2019 23:25:21 | Unpacking libtcl8.6:amd64 (8.6.5+dfsg-2) ... |
| 30-May-2019 23:25:22 | Selecting previously unselected package libtiff5:amd64. |
| 30-May-2019 23:25:22 | Preparing to unpack .../libtiff5_4.0.6-1ubuntu0.6_amd64.deb ... |
| 30-May-2019 23:25:22 | Unpacking libtiff5:amd64 (4.0.6-1ubuntu0.6) ... |
| 30-May-2019 23:25:22 | Selecting previously unselected package libtk8.6:amd64. |
| 30-May-2019 23:25:22 | Preparing to unpack .../libtk8.6_8.6.5-1_amd64.deb ... |
| 30-May-2019 23:25:22 | Unpacking libtk8.6:amd64 (8.6.5-1) ... |
| 30-May-2019 23:25:22 | Selecting previously unselected package libxt6:amd64. |
| 30-May-2019 23:25:22 | Preparing to unpack .../libxt6_1%3a1.1.5-0ubuntu1_amd64.deb ... |
| 30-May-2019 23:25:23 | Unpacking libxt6:amd64 (1:1.1.5-0ubuntu1) ... |
| 30-May-2019 23:25:23 | Selecting previously unselected package pkg-config. |
| 30-May-2019 23:25:23 | Preparing to unpack .../pkg-config_0.29.1-0ubuntu1_amd64.deb ... |
| 30-May-2019 23:25:23 | Unpacking pkg-config (0.29.1-0ubuntu1) ... |
| 30-May-2019 23:25:24 | Selecting previously unselected package zip. |
| 30-May-2019 23:25:24 | Preparing to unpack .../archives/zip_3.0-11_amd64.deb ... |
| 30-May-2019 23:25:24 | Unpacking zip (3.0-11) ... |
| 30-May-2019 23:25:25 | Selecting previously unselected package unzip. |
| 30-May-2019 23:25:25 | Preparing to unpack .../unzip_6.0-20ubuntu1_amd64.deb ... |
| 30-May-2019 23:25:25 | Unpacking unzip (6.0-20ubuntu1) ... |
| 30-May-2019 23:25:25 | Selecting previously unselected package xdg-utils. |
| 30-May-2019 23:25:25 | Preparing to unpack .../xdg-utils_1.1.1-1ubuntu1.16.04.3_all.deb ... |
| 30-May-2019 23:25:25 | Unpacking xdg-utils (1.1.1-1ubuntu1.16.04.3) ... |
| 30-May-2019 23:25:26 | Selecting previously unselected package r-base-core. |
| 30-May-2019 23:25:26 | Preparing to unpack .../r-base-core_3.4.4-1xenial0_amd64.deb ... |
| 30-May-2019 23:25:26 | Unpacking r-base-core (3.4.4-1xenial0) ... |
| 30-May-2019 23:25:28 | Selecting previously unselected package liblzma-dev:amd64. |
| 30-May-2019 23:25:28 | Preparing to unpack .../liblzma-dev_5.1.1alpha+20120614-2ubuntu2_amd64.deb ... |
| 30-May-2019 23:25:28 | Unpacking liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... |
| 30-May-2019 23:25:29 | Selecting previously unselected package r-base-dev. |
| 30-May-2019 23:25:29 | Preparing to unpack .../r-base-dev_3.4.4-1xenial0_all.deb ... |
| 30-May-2019 23:25:29 | Unpacking r-base-dev (3.4.4-1xenial0) ... |
| 30-May-2019 23:25:29 | Processing triggers for libc-bin (2.23-0ubuntu11) ... |
| 30-May-2019 23:25:29 | Processing triggers for mime-support (3.59ubuntu1) ... |
| 30-May-2019 23:25:29 | Processing triggers for systemd (229-4ubuntu21.21) ... |
| 30-May-2019 23:25:30 | Setting up libgdbm3:amd64 (1.8.3-13.1) ... |
| 30-May-2019 23:25:30 | Setting up libglib2.0-0:amd64 (2.48.2-0ubuntu4.1) ... |
| 30-May-2019 23:25:30 | No schema files found: doing nothing. |
| 30-May-2019 23:25:30 | Setting up libxau6:amd64 (1:1.0.8-1) ... |
| 30-May-2019 23:25:30 | Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... |
| 30-May-2019 23:25:30 | Setting up libxcb1:amd64 (1.11.1-1ubuntu1) ... |
| 30-May-2019 23:25:31 | Setting up libx11-data (2:1.6.3-1ubuntu2.1) ... |
| 30-May-2019 23:25:31 | Setting up libx11-6:amd64 (2:1.6.3-1ubuntu2.1) ... |
| 30-May-2019 23:25:31 | Setting up libxext6:amd64 (2:1.3.3-1) ... |
| 30-May-2019 23:25:32 | Setting up groff-base (1.22.3-7) ... |
| 30-May-2019 23:25:32 | Setting up bsdmainutils (9.0.6ubuntu3) ... |
| 30-May-2019 23:25:33 | update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode |
| 30-May-2019 23:25:33 | update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode |
| 30-May-2019 23:25:33 | Setting up libpipeline1:amd64 (1.4.1-2) ... |
| 30-May-2019 23:25:33 | Setting up man-db (2.7.5-1) ... |
| 30-May-2019 23:25:33 | debconf: unable to initialize frontend: Dialog |
| 30-May-2019 23:25:33 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 30-May-2019 23:25:33 | debconf: falling back to frontend: Readline |
| 30-May-2019 23:25:33 | Building database of manual pages ... |
| 30-May-2019 23:25:43 | Setting up fonts-dejavu-core (2.35-1) ... |
| 30-May-2019 23:25:44 | Setting up ucf (3.0036) ... |
| 30-May-2019 23:25:44 | debconf: unable to initialize frontend: Dialog |
| 30-May-2019 23:25:44 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 30-May-2019 23:25:44 | debconf: falling back to frontend: Readline |
| 30-May-2019 23:25:44 | Setting up fontconfig-config (2.11.94-0ubuntu1.1) ... |
| 30-May-2019 23:25:46 | Setting up libpng12-0:amd64 (1.2.54-1ubuntu1.1) ... |
| 30-May-2019 23:25:46 | Setting up libfreetype6:amd64 (2.6.1-0.1ubuntu2.3) ... |
| 30-May-2019 23:25:47 | Setting up libfontconfig1:amd64 (2.11.94-0ubuntu1.1) ... |
| 30-May-2019 23:25:47 | Setting up fontconfig (2.11.94-0ubuntu1.1) ... |
| 30-May-2019 23:25:50 | Regenerating fonts cache... done. |
| 30-May-2019 23:25:50 | Setting up x11-common (1:7.7+13ubuntu3.1) ... |
| 30-May-2019 23:25:51 | debconf: unable to initialize frontend: Dialog |
| 30-May-2019 23:25:51 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 30-May-2019 23:25:51 | debconf: falling back to frontend: Readline |
| 30-May-2019 23:25:51 | update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults |
| 30-May-2019 23:25:51 | invoke-rc.d: could not determine current runlevel |
| 30-May-2019 23:25:51 | invoke-rc.d: policy-rc.d denied execution of start. |
| 30-May-2019 23:25:51 | Setting up libice6:amd64 (2:1.0.9-1) ... |
| 30-May-2019 23:25:51 | Setting up libjpeg-turbo8:amd64 (1.4.2-0ubuntu3.1) ... |
| 30-May-2019 23:25:51 | Setting up libpcrecpp0v5:amd64 (2:8.38-3.1) ... |
| 30-May-2019 23:25:51 | Setting up libsigsegv2:amd64 (2.10-4) ... |
| 30-May-2019 23:25:51 | Setting up libsm6:amd64 (2:1.2.2-1) ... |
| 30-May-2019 23:25:52 | Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... |
| 30-May-2019 23:25:52 | Setting up libxrender1:amd64 (1:0.9.9-0ubuntu1) ... |
| 30-May-2019 23:25:52 | Setting up libxft2:amd64 (2.3.2-1) ... |
| 30-May-2019 23:25:53 | Setting up libxss1:amd64 (1:1.2.2-1) ... |
| 30-May-2019 23:25:53 | Setting up perl-modules-5.22 (5.22.1-9ubuntu0.6) ... |
| 30-May-2019 23:25:54 | Setting up libperl5.22:amd64 (5.22.1-9ubuntu0.6) ... |
| 30-May-2019 23:25:54 | Setting up perl (5.22.1-9ubuntu0.6) ... |
| 30-May-2019 23:25:54 | update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode |
| 30-May-2019 23:25:54 | Setting up libjbig0:amd64 (2.1-3.1) ... |
| 30-May-2019 23:25:54 | Setting up libgmp10:amd64 (2:6.1.0+dfsg-2) ... |
| 30-May-2019 23:25:54 | Setting up libmpfr4:amd64 (3.1.4-1) ... |
| 30-May-2019 23:25:55 | Setting up libmpc3:amd64 (1.0.3-1) ... |
| 30-May-2019 23:25:55 | Setting up tzdata (2019a-0ubuntu0.16.04) ... |
| 30-May-2019 23:25:55 | debconf: unable to initialize frontend: Dialog |
| 30-May-2019 23:25:55 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 30-May-2019 23:25:55 | debconf: falling back to frontend: Readline |
| 30-May-2019 23:25:55 | |
| 30-May-2019 23:25:55 | Current default time zone: 'Etc/UTC' |
| 30-May-2019 23:25:55 | Local time is now: Fri May 31 04:25:55 UTC 2019. |
| 30-May-2019 23:25:55 | Universal Time is now: Fri May 31 04:25:55 UTC 2019. |
| 30-May-2019 23:25:55 | Run 'dpkg-reconfigure tzdata' if you wish to change it. |
| 30-May-2019 23:25:55 | |
| 30-May-2019 23:25:55 | Setting up bzip2 (1.0.6-8) ... |
| 30-May-2019 23:25:55 | Setting up libmagic1:amd64 (1:5.25-2ubuntu1.2) ... |
| 30-May-2019 23:25:56 | Setting up file (1:5.25-2ubuntu1.2) ... |
| 30-May-2019 23:25:56 | Setting up libnettle6:amd64 (3.2-1ubuntu0.16.04.1) ... |
| 30-May-2019 23:25:56 | Setting up libhogweed4:amd64 (3.2-1ubuntu0.16.04.1) ... |
| 30-May-2019 23:25:56 | Setting up libidn11:amd64 (1.32-3ubuntu1.2) ... |
| 30-May-2019 23:25:56 | Setting up libp11-kit0:amd64 (0.23.2-5~ubuntu16.04.1) ... |
| 30-May-2019 23:25:56 | Setting up libtasn1-6:amd64 (4.7-3ubuntu0.16.04.3) ... |
| 30-May-2019 23:25:57 | Setting up libgnutls30:amd64 (3.4.10-4ubuntu1.5) ... |
| 30-May-2019 23:25:57 | Setting up netbase (5.3) ... |
| 30-May-2019 23:25:58 | Setting up libasprintf0v5:amd64 (0.19.7-2ubuntu3.1) ... |
| 30-May-2019 23:25:58 | Setting up gettext-base (0.19.7-2ubuntu3.1) ... |
| 30-May-2019 23:25:59 | Setting up libroken18-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
| 30-May-2019 23:25:59 | Setting up libasn1-8-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
| 30-May-2019 23:25:59 | Setting up libkrb5support0:amd64 (1.13.2+dfsg-5ubuntu2.1) ... |
| 30-May-2019 23:25:59 | Setting up libk5crypto3:amd64 (1.13.2+dfsg-5ubuntu2.1) ... |
| 30-May-2019 23:25:59 | Setting up libkeyutils1:amd64 (1.5.9-8ubuntu1) ... |
| 30-May-2019 23:25:59 | Setting up libkrb5-3:amd64 (1.13.2+dfsg-5ubuntu2.1) ... |
| 30-May-2019 23:25:59 | Setting up libgssapi-krb5-2:amd64 (1.13.2+dfsg-5ubuntu2.1) ... |
| 30-May-2019 23:26:00 | Setting up libhcrypto4-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
| 30-May-2019 23:26:00 | Setting up libheimbase1-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
| 30-May-2019 23:26:00 | Setting up libwind0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
| 30-May-2019 23:26:00 | Setting up libhx509-5-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
| 30-May-2019 23:26:00 | Setting up libkrb5-26-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
| 30-May-2019 23:26:00 | Setting up libheimntlm0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
| 30-May-2019 23:26:01 | Setting up libgssapi3-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
| 30-May-2019 23:26:01 | Setting up libicu55:amd64 (55.1-7ubuntu0.4) ... |
| 30-May-2019 23:26:01 | Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-14ubuntu0.1) ... |
| 30-May-2019 23:26:01 | Setting up libsasl2-2:amd64 (2.1.26.dfsg1-14ubuntu0.1) ... |
| 30-May-2019 23:26:01 | Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2ubuntu3.5) ... |
| 30-May-2019 23:26:01 | Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d-1ubuntu0.1) ... |
| 30-May-2019 23:26:02 | Setting up libxml2:amd64 (2.9.3+dfsg1-1ubuntu0.6) ... |
| 30-May-2019 23:26:02 | Setting up libxmuu1:amd64 (2:1.1.2-2) ... |
| 30-May-2019 23:26:02 | Setting up xauth (1:1.0.9-1ubuntu2) ... |
| 30-May-2019 23:26:02 | Setting up m4 (1.4.17-5) ... |
| 30-May-2019 23:26:02 | Setting up autoconf (2.69-9) ... |
| 30-May-2019 23:26:02 | Setting up autotools-dev (20150820.1) ... |
| 30-May-2019 23:26:02 | Setting up automake (1:1.15-4ubuntu1) ... |
| 30-May-2019 23:26:03 | update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode |
| 30-May-2019 23:26:03 | Setting up binutils (2.26.1-1ubuntu1~16.04.8) ... |
| 30-May-2019 23:26:03 | Setting up libc-dev-bin (2.23-0ubuntu11) ... |
| 30-May-2019 23:26:03 | Setting up linux-libc-dev:amd64 (4.4.0-148.174) ... |
| 30-May-2019 23:26:03 | Setting up libc6-dev:amd64 (2.23-0ubuntu11) ... |
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| 30-May-2019 23:26:04 | Setting up cpp-5 (5.4.0-6ubuntu1~16.04.11) ... |
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| 30-May-2019 23:26:05 | Setting up libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 30-May-2019 23:26:05 | Setting up libgomp1:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 30-May-2019 23:26:05 | Setting up libitm1:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 30-May-2019 23:26:05 | Setting up libatomic1:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 30-May-2019 23:26:06 | Setting up libasan2:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 30-May-2019 23:26:06 | Setting up liblsan0:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
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| 30-May-2019 23:26:07 | Setting up libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 30-May-2019 23:26:07 | Setting up libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
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| 30-May-2019 23:26:08 | Setting up gcc (4:5.3.1-1ubuntu1) ... |
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| 30-May-2019 23:26:09 | Setting up g++ (4:5.3.1-1ubuntu1) ... |
| 30-May-2019 23:26:09 | update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode |
| 30-May-2019 23:26:09 | Setting up make (4.1-6) ... |
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| 30-May-2019 23:26:09 | update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode |
| 30-May-2019 23:26:09 | Setting up patch (2.7.5-1ubuntu0.16.04.1) ... |
| 30-May-2019 23:26:09 | Setting up dpkg-dev (1.18.4ubuntu1.5) ... |
| 30-May-2019 23:26:10 | Setting up build-essential (12.1ubuntu2) ... |
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| 30-May-2019 23:26:11 | Setting up libarchive-zip-perl (1.56-2ubuntu0.1) ... |
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| 30-May-2019 23:26:18 | Setting up libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
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| 30-May-2019 23:26:18 | Setting up gfortran (4:5.3.1-1ubuntu1) ... |
| 30-May-2019 23:26:18 | update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode |
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| 30-May-2019 23:26:19 | update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode |
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| 30-May-2019 23:26:19 | Setting up libbz2-dev:amd64 (1.0.6-8) ... |
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| 30-May-2019 23:26:21 | Setting up libicu-dev:amd64 (55.1-7ubuntu0.4) ... |
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| 30-May-2019 23:26:23 | Setting up liblapack3 (3.6.0-2ubuntu2) ... |
| 30-May-2019 23:26:23 | update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode |
| 30-May-2019 23:26:23 | Setting up liblapack-dev (3.6.0-2ubuntu2) ... |
| 30-May-2019 23:26:23 | update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode |
| 30-May-2019 23:26:23 | Setting up libtinfo-dev:amd64 (6.0+20160213-1ubuntu1) ... |
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| 30-May-2019 23:26:23 | Setting up libthai-data (0.1.24-2) ... |
| 30-May-2019 23:26:24 | Setting up libthai0:amd64 (0.1.24-2) ... |
| 30-May-2019 23:26:24 | Setting up libpango-1.0-0:amd64 (1.38.1-1) ... |
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| 30-May-2019 23:26:24 | Setting up libpaper1:amd64 (1.1.24+nmu4ubuntu1) ... |
| 30-May-2019 23:26:24 | debconf: unable to initialize frontend: Dialog |
| 30-May-2019 23:26:24 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 30-May-2019 23:26:24 | debconf: falling back to frontend: Readline |
| 30-May-2019 23:26:24 | |
| 30-May-2019 23:26:24 | Creating config file /etc/papersize with new version |
| 30-May-2019 23:26:25 | Setting up libpaper-utils (1.1.24+nmu4ubuntu1) ... |
| 30-May-2019 23:26:25 | Setting up libpcre16-3:amd64 (2:8.38-3.1) ... |
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| 30-May-2019 23:26:26 | Setting up libpcre3-dev:amd64 (2:8.38-3.1) ... |
| 30-May-2019 23:26:26 | Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4.1) ... |
| 30-May-2019 23:26:26 | Setting up libpng12-dev:amd64 (1.2.54-1ubuntu1.1) ... |
| 30-May-2019 23:26:26 | Setting up libreadline6-dev:amd64 (6.3-8ubuntu2) ... |
| 30-May-2019 23:26:27 | Setting up libreadline-dev:amd64 (6.3-8ubuntu2) ... |
| 30-May-2019 23:26:27 | Setting up libtcl8.6:amd64 (8.6.5+dfsg-2) ... |
| 30-May-2019 23:26:27 | Setting up libtiff5:amd64 (4.0.6-1ubuntu0.6) ... |
| 30-May-2019 23:26:27 | Setting up libtk8.6:amd64 (8.6.5-1) ... |
| 30-May-2019 23:26:27 | Setting up libxt6:amd64 (1:1.1.5-0ubuntu1) ... |
| 30-May-2019 23:26:27 | Setting up pkg-config (0.29.1-0ubuntu1) ... |
| 30-May-2019 23:26:28 | Setting up zip (3.0-11) ... |
| 30-May-2019 23:26:28 | Setting up unzip (6.0-20ubuntu1) ... |
| 30-May-2019 23:26:28 | Setting up xdg-utils (1.1.1-1ubuntu1.16.04.3) ... |
| 30-May-2019 23:26:28 | Setting up r-base-core (3.4.4-1xenial0) ... |
| 30-May-2019 23:26:28 | debconf: unable to initialize frontend: Dialog |
| 30-May-2019 23:26:28 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 30-May-2019 23:26:28 | debconf: falling back to frontend: Readline |
| 30-May-2019 23:26:29 | |
| 30-May-2019 23:26:29 | Creating config file /etc/R/Renviron with new version |
| 30-May-2019 23:26:29 | Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... |
| 30-May-2019 23:26:29 | Setting up debhelper (9.20160115ubuntu3) ... |
| 30-May-2019 23:26:29 | Setting up libwww-perl (6.15-1) ... |
| 30-May-2019 23:26:29 | Setting up libxml-parser-perl (2.44-1build1) ... |
| 30-May-2019 23:26:29 | Setting up intltool (0.51.0-2ubuntu1.16.04.1) ... |
| 30-May-2019 23:26:29 | Setting up dh-translations (129) ... |
| 30-May-2019 23:26:30 | Setting up cdbs (0.4.130ubuntu2) ... |
| 30-May-2019 23:26:30 | Setting up r-base-dev (3.4.4-1xenial0) ... |
| 30-May-2019 23:26:30 | Setting up dh-strip-nondeterminism (0.015-1) ... |
| 30-May-2019 23:26:31 | Setting up liblwp-protocol-https-perl (6.06-2) ... |
| 30-May-2019 23:26:31 | Processing triggers for libc-bin (2.23-0ubuntu11) ... |
| 30-May-2019 23:26:31 | Processing triggers for systemd (229-4ubuntu21.21) ... |
| 30-May-2019 23:26:32 | Installing package into '/usr/local/lib/R/site-library' |
| 30-May-2019 23:26:32 | (as 'lib' is unspecified) |
| 30-May-2019 23:26:32 | trying URL 'http://cran.rstudio.com/src/contrib/jsonlite_1.6.tar.gz' |
| 30-May-2019 23:26:33 | Content type 'application/x-gzip' length 1052728 bytes (1.0 MB) |
| 30-May-2019 23:26:33 | ================================================== |
| 30-May-2019 23:26:33 | downloaded 1.0 MB |
| 30-May-2019 23:26:33 | |
| 30-May-2019 23:26:33 | * installing *source* package 'jsonlite' ... |
| 30-May-2019 23:26:33 | ** package 'jsonlite' successfully unpacked and MD5 sums checked |
| 30-May-2019 23:26:33 | ** libs |
| 30-May-2019 23:26:33 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base64.c -o base64.o |
| 30-May-2019 23:26:33 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_array.c -o collapse_array.o |
| 30-May-2019 23:26:33 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_object.c -o collapse_object.o |
| 30-May-2019 23:26:33 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_pretty.c -o collapse_pretty.o |
| 30-May-2019 23:26:33 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c escape_chars.c -o escape_chars.o |
| 30-May-2019 23:26:33 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c integer64_to_na.c -o integer64_to_na.o |
| 30-May-2019 23:26:33 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_datelist.c -o is_datelist.o |
| 30-May-2019 23:26:33 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_recordlist.c -o is_recordlist.o |
| 30-May-2019 23:26:34 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_scalarlist.c -o is_scalarlist.o |
| 30-May-2019 23:26:34 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c modp_numtoa.c -o modp_numtoa.o |
| 30-May-2019 23:26:34 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c null_to_na.c -o null_to_na.o |
| 30-May-2019 23:26:34 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c num_to_char.c -o num_to_char.o |
| 30-May-2019 23:26:34 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c parse.c -o parse.o |
| 30-May-2019 23:26:34 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c prettify.c -o prettify.o |
| 30-May-2019 23:26:34 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c push_parser.c -o push_parser.o |
| 30-May-2019 23:26:34 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c r-base64.c -o r-base64.o |
| 30-May-2019 23:26:34 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c register.c -o register.o |
| 30-May-2019 23:26:34 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c row_collapse.c -o row_collapse.o |
| 30-May-2019 23:26:34 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transpose_list.c -o transpose_list.o |
| 30-May-2019 23:26:34 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c validate.c -o validate.o |
| 30-May-2019 23:26:34 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl.c -o yajl/yajl.o |
| 30-May-2019 23:26:34 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o |
| 30-May-2019 23:26:34 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_buf.c -o yajl/yajl_buf.o |
| 30-May-2019 23:26:35 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_encode.c -o yajl/yajl_encode.o |
| 30-May-2019 23:26:35 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_gen.c -o yajl/yajl_gen.o |
| 30-May-2019 23:26:35 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_lex.c -o yajl/yajl_lex.o |
| 30-May-2019 23:26:35 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_parser.c -o yajl/yajl_parser.o |
| 30-May-2019 23:26:35 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_tree.c -o yajl/yajl_tree.o |
| 30-May-2019 23:26:35 | ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o |
| 30-May-2019 23:26:35 | g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/usr/lib/R/lib -lR |
| 30-May-2019 23:26:35 | installing to /usr/local/lib/R/site-library/jsonlite/libs |
| 30-May-2019 23:26:35 | ** R |
| 30-May-2019 23:26:35 | ** inst |
| 30-May-2019 23:26:35 | ** preparing package for lazy loading |
| 30-May-2019 23:26:36 | ** help |
| 30-May-2019 23:26:36 | *** installing help indices |
| 30-May-2019 23:26:36 | ** building package indices |
| 30-May-2019 23:26:36 | ** installing vignettes |
| 30-May-2019 23:26:36 | ** testing if installed package can be loaded |
| 30-May-2019 23:26:36 | * DONE (jsonlite) |
| 30-May-2019 23:26:36 | |
| 30-May-2019 23:26:36 | The downloaded source packages are in |
| 30-May-2019 23:26:36 | '/tmp/RtmpQLsVrQ/downloaded_packages' |
| 30-May-2019 23:26:36 | [1] "/usr/local/lib/R/site-library/jsonlite" |
| 30-May-2019 23:26:43 | Removing intermediate container 6e66337cf6c5 |
| 30-May-2019 23:26:43 | ---> 2d3760fa8fb4 |
| 30-May-2019 23:26:43 | Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/ |
| 30-May-2019 23:26:44 | ---> 6989934b3b5d |
| 30-May-2019 23:26:44 | Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 30-May-2019 23:26:44 | ---> Running in aaa088559ad7 |
| 30-May-2019 23:26:45 | Removing intermediate container aaa088559ad7 |
| 30-May-2019 23:26:45 | ---> d0e5a7a64f6f |
| 30-May-2019 23:26:45 | Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 30-May-2019 23:26:45 | ---> Running in 854e9defdd59 |
| 30-May-2019 23:26:45 | Removing intermediate container 854e9defdd59 |
| 30-May-2019 23:26:45 | ---> 005a099d3f4a |
| 30-May-2019 23:26:45 | Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ |
| 30-May-2019 23:26:45 | ---> Running in e4a0a90e398e |
| 30-May-2019 23:26:46 | Removing intermediate container e4a0a90e398e |
| 30-May-2019 23:26:46 | ---> 7cc834a1f567 |
| 30-May-2019 23:26:46 | Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi |
| 30-May-2019 23:26:46 | ---> Running in 18ad76844f9c |
| 30-May-2019 23:26:46 | Removing intermediate container 18ad76844f9c |
| 30-May-2019 23:26:46 | ---> 634c6259d143 |
| 30-May-2019 23:26:46 | Step 9/10 : ONBUILD ADD . /home/clowder/ |
| 30-May-2019 23:26:46 | ---> Running in 568f72279b9a |
| 30-May-2019 23:26:47 | Removing intermediate container 568f72279b9a |
| 30-May-2019 23:26:47 | ---> a3d77f40c658 |
| 30-May-2019 23:26:47 | Step 10/10 : CMD python r_extractor.py |
| 30-May-2019 23:26:47 | ---> Running in ff7e09422b5c |
| 30-May-2019 23:26:47 | Removing intermediate container ff7e09422b5c |
| 30-May-2019 23:26:47 | ---> 4a56839e2505 |
| 30-May-2019 23:26:47 | Successfully built 4a56839e2505 |
| 30-May-2019 23:26:47 | Successfully tagged clowder/extractors-simple-r-extractor:onbuild |
| 30-May-2019 23:26:47 | Sending build context to Docker daemon 281.1kB |
| 30-May-2019 23:26:47 | |
| 30-May-2019 23:26:47 | Step 1/9 : FROM ubuntu:16.04 |
| 30-May-2019 23:26:47 | ---> 2a697363a870 |
| 30-May-2019 23:26:47 | Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" |
| 30-May-2019 23:26:47 | ---> Using cache |
| 30-May-2019 23:26:47 | ---> 07339c96c1a7 |
| 30-May-2019 23:26:47 | Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* |
| 30-May-2019 23:26:47 | ---> Using cache |
| 30-May-2019 23:26:47 | ---> 66b8b13e8095 |
| 30-May-2019 23:26:47 | Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder |
| 30-May-2019 23:26:47 | ---> Using cache |
| 30-May-2019 23:26:47 | ---> d8c1b0c331b0 |
| 30-May-2019 23:26:47 | Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/ |
| 30-May-2019 23:26:47 | ---> Using cache |
| 30-May-2019 23:26:47 | ---> 53f00a224aaa |
| 30-May-2019 23:26:47 | Step 6/9 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder |
| 30-May-2019 23:26:47 | ---> Using cache |
| 30-May-2019 23:26:47 | ---> eee101981043 |
| 30-May-2019 23:26:47 | Step 7/9 : WORKDIR /home/clowder |
| 30-May-2019 23:26:47 | ---> Using cache |
| 30-May-2019 23:26:47 | ---> c91f4b8f86bc |
| 30-May-2019 23:26:47 | Step 8/9 : COPY notifications.json /home/clowder |
| 30-May-2019 23:26:47 | ---> Using cache |
| 30-May-2019 23:26:47 | ---> dbc4c8fabc3a |
| 30-May-2019 23:26:47 | Step 9/9 : CMD python "./${MAIN_SCRIPT}" |
| 30-May-2019 23:26:47 | ---> Using cache |
| 30-May-2019 23:26:47 | ---> e3941ef228e0 |
| 30-May-2019 23:26:47 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
| 30-May-2019 23:26:47 | Successfully built e3941ef228e0 |
| 30-May-2019 23:26:47 | Successfully tagged clowder/pyclowder-python3:latest |
| 30-May-2019 23:26:48 | Sending build context to Docker daemon 279.6kB |
| 30-May-2019 23:26:48 | |
| 30-May-2019 23:26:48 | Step 1/6 : FROM clowder/pyclowder |
| 30-May-2019 23:26:48 | ---> e3941ef228e0 |
| 30-May-2019 23:26:48 | Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 30-May-2019 23:26:48 | ---> Using cache |
| 30-May-2019 23:26:48 | ---> b373d4266138 |
| 30-May-2019 23:26:48 | Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 30-May-2019 23:26:48 | ---> Using cache |
| 30-May-2019 23:26:48 | ---> 8fd45ef39137 |
| 30-May-2019 23:26:48 | Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
| 30-May-2019 23:26:48 | ---> Using cache |
| 30-May-2019 23:26:48 | ---> c483dc4e92f2 |
| 30-May-2019 23:26:48 | Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
| 30-May-2019 23:26:48 | ---> Using cache |
| 30-May-2019 23:26:48 | ---> d19ae6315361 |
| 30-May-2019 23:26:48 | Step 6/6 : ONBUILD ADD . /home/clowder/ |
| 30-May-2019 23:26:48 | ---> Using cache |
| 30-May-2019 23:26:48 | ---> 826af52f4fb4 |
| 30-May-2019 23:26:48 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
| 30-May-2019 23:26:48 | Successfully built 826af52f4fb4 |
| 30-May-2019 23:26:48 | Successfully tagged clowder/pyclowder-python3:onbuild |
| 30-May-2019 23:26:48 | Sending build context to Docker daemon 6.656kB |
| 30-May-2019 23:26:48 | |
| 30-May-2019 23:26:48 | Step 1/9 : FROM clowder/pyclowder:onbuild |
| 30-May-2019 23:26:48 | # Executing 5 build triggers |
| 30-May-2019 23:26:48 | ---> Using cache |
| 30-May-2019 23:26:48 | ---> Using cache |
| 30-May-2019 23:26:48 | ---> Using cache |
| 30-May-2019 23:26:48 | ---> Using cache |
| 30-May-2019 23:26:48 | ---> Using cache |
| 30-May-2019 23:26:48 | ---> 86ff6d69b221 |
| 30-May-2019 23:26:48 | Step 2/9 : ENV EXTRACTION_FUNC="" |
| 30-May-2019 23:26:48 | ---> Using cache |
| 30-May-2019 23:26:48 | ---> af366a91ccdd |
| 30-May-2019 23:26:48 | Step 3/9 : ENV EXTRACTION_MODULE="" |
| 30-May-2019 23:26:48 | ---> Using cache |
| 30-May-2019 23:26:48 | ---> 5ccb678d30c6 |
| 30-May-2019 23:26:48 | Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 30-May-2019 23:26:48 | ---> Using cache |
| 30-May-2019 23:26:48 | ---> 5508388d0713 |
| 30-May-2019 23:26:48 | Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 30-May-2019 23:26:48 | ---> Using cache |
| 30-May-2019 23:26:48 | ---> a015d01ce7f7 |
| 30-May-2019 23:26:48 | Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
| 30-May-2019 23:26:48 | ---> Using cache |
| 30-May-2019 23:26:48 | ---> 55cac8451e2f |
| 30-May-2019 23:26:48 | Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
| 30-May-2019 23:26:48 | ---> Using cache |
| 30-May-2019 23:26:48 | ---> 508f78486461 |
| 30-May-2019 23:26:48 | Step 8/9 : ONBUILD ADD . /home/clowder/ |
| 30-May-2019 23:26:48 | ---> Using cache |
| 30-May-2019 23:26:48 | ---> f5d1282df646 |
| 30-May-2019 23:26:48 | Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" |
| 30-May-2019 23:26:48 | ---> Using cache |
| 30-May-2019 23:26:48 | ---> c6fdc7456e56 |
| 30-May-2019 23:26:48 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
| 30-May-2019 23:26:48 | Successfully built c6fdc7456e56 |
| 30-May-2019 23:26:48 | Successfully tagged clowder/extractors-simple-extractor-python3:onbuild |
| 30-May-2019 23:26:48 | Sending build context to Docker daemon 13.31kB |
| 30-May-2019 23:26:48 | |
| 30-May-2019 23:26:48 | Step 1/10 : FROM clowder/pyclowder:latest |
| 30-May-2019 23:26:48 | ---> e3941ef228e0 |
| 30-May-2019 23:26:48 | Step 2/10 : ENV R_SCRIPT="" R_FUNCTION="" |
| 30-May-2019 23:26:48 | ---> Using cache |
| 30-May-2019 23:26:48 | ---> 4b8f93c5517d |
| 30-May-2019 23:26:48 | Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" |
| 30-May-2019 23:26:48 | ---> Using cache |
| 30-May-2019 23:26:48 | ---> 2d3760fa8fb4 |
| 30-May-2019 23:26:48 | Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/ |
| 30-May-2019 23:26:48 | ---> Using cache |
| 30-May-2019 23:26:48 | ---> 6989934b3b5d |
| 30-May-2019 23:26:48 | Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 30-May-2019 23:26:48 | ---> Using cache |
| 30-May-2019 23:26:48 | ---> d0e5a7a64f6f |
| 30-May-2019 23:26:48 | Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 30-May-2019 23:26:48 | ---> Using cache |
| 30-May-2019 23:26:48 | ---> 005a099d3f4a |
| 30-May-2019 23:26:48 | Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ |
| 30-May-2019 23:26:48 | ---> Using cache |
| 30-May-2019 23:26:48 | ---> 7cc834a1f567 |
| 30-May-2019 23:26:48 | Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi |
| 30-May-2019 23:26:48 | ---> Using cache |
| 30-May-2019 23:26:48 | ---> 634c6259d143 |
| 30-May-2019 23:26:48 | Step 9/10 : ONBUILD ADD . /home/clowder/ |
| 30-May-2019 23:26:48 | ---> Using cache |
| 30-May-2019 23:26:48 | ---> a3d77f40c658 |
| 30-May-2019 23:26:48 | Step 10/10 : CMD python r_extractor.py |
| 30-May-2019 23:26:48 | ---> Using cache |
| 30-May-2019 23:26:48 | ---> 4a56839e2505 |
| 30-May-2019 23:26:48 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
| 30-May-2019 23:26:48 | Successfully built 4a56839e2505 |
| 30-May-2019 23:26:48 | Successfully tagged clowder/extractors-simple-r-extractor-python3:onbuild |
| 30-May-2019 23:26:48 | Sending build context to Docker daemon 9.216kB |
| 30-May-2019 23:26:48 | |
| 30-May-2019 23:26:48 | Step 1/2 : FROM clowder/pyclowder:onbuild |
| 30-May-2019 23:26:48 | # Executing 5 build triggers |
| 30-May-2019 23:26:49 | ---> Running in 9c1763770952 |
| 30-May-2019 23:26:51 | Removing intermediate container 9c1763770952 |
| 30-May-2019 23:26:51 | ---> Running in 4d5ae29e14dc |
| 30-May-2019 23:26:54 | Removing intermediate container 4d5ae29e14dc |
| 30-May-2019 23:26:54 | ---> e788ad81d386 |
| 30-May-2019 23:26:54 | Step 2/2 : ENV MAIN_SCRIPT="wordcount.py" |
| 30-May-2019 23:26:54 | ---> Running in 2e7e6c021b7a |
| 30-May-2019 23:26:55 | Removing intermediate container 2e7e6c021b7a |
| 30-May-2019 23:26:55 | ---> e27f64ef2964 |
| 30-May-2019 23:26:55 | Successfully built e27f64ef2964 |
| 30-May-2019 23:26:55 | Successfully tagged clowder/extractors-wordcount:latest |
| 30-May-2019 23:26:55 | Sending build context to Docker daemon 5.12kB |
| 30-May-2019 23:26:55 | |
| 30-May-2019 23:26:55 | Step 1/3 : FROM clowder/extractors-simple-extractor:onbuild |
| 30-May-2019 23:26:55 | # Executing 5 build triggers |
| 30-May-2019 23:26:55 | ---> Running in 30d7573b0256 |
| 30-May-2019 23:26:58 | Removing intermediate container 30d7573b0256 |
| 30-May-2019 23:26:58 | ---> Running in 4ae3509dc8a4 |
| 30-May-2019 23:27:00 | Removing intermediate container 4ae3509dc8a4 |
| 30-May-2019 23:27:00 | ---> 522da0dcdafe |
| 30-May-2019 23:27:00 | Step 2/3 : ENV EXTRACTION_FUNC="wordcount" |
| 30-May-2019 23:27:01 | ---> Running in 6e28bfe25db4 |
| 30-May-2019 23:27:01 | Removing intermediate container 6e28bfe25db4 |
| 30-May-2019 23:27:01 | ---> 516a66493328 |
| 30-May-2019 23:27:01 | Step 3/3 : ENV EXTRACTION_MODULE="wordcount" |
| 30-May-2019 23:27:01 | ---> Running in 278925a6a8c9 |
| 30-May-2019 23:27:02 | Removing intermediate container 278925a6a8c9 |
| 30-May-2019 23:27:02 | ---> 468500054fc3 |
| 30-May-2019 23:27:02 | Successfully built 468500054fc3 |
| 30-May-2019 23:27:02 | Successfully tagged clowder/extractors-wordcount-simple-extractor:latest |
| 30-May-2019 23:27:02 | Sending build context to Docker daemon 5.12kB |
| 30-May-2019 23:27:02 | |
| 30-May-2019 23:27:02 | Step 1/2 : FROM clowder/extractors-simple-r-extractor:onbuild |
| 30-May-2019 23:27:02 | # Executing 5 build triggers |
| 30-May-2019 23:27:03 | ---> Running in 12288a4c36b3 |
| 30-May-2019 23:27:04 | Removing intermediate container 12288a4c36b3 |
| 30-May-2019 23:27:05 | ---> Running in c13c669af331 |
| 30-May-2019 23:27:07 | Removing intermediate container c13c669af331 |
| 30-May-2019 23:27:07 | ---> e0c4a7b48e6b |
| 30-May-2019 23:27:07 | Step 2/2 : ENV R_SCRIPT="wordcount.R" R_FUNCTION="process_file" |
| 30-May-2019 23:27:07 | ---> Running in 38e193733fea |
| 30-May-2019 23:27:08 | Removing intermediate container 38e193733fea |
| 30-May-2019 23:27:08 | ---> 7d13c83a3f92 |
| 30-May-2019 23:27:08 | Successfully built 7d13c83a3f92 |
| 30-May-2019 23:27:08 | Successfully tagged clowder/extractors-wordcount-simple-r-extractor:latest |
| 30-May-2019 23:27:08 | Sending build context to Docker daemon 8.192kB |
| 30-May-2019 23:27:08 | |
| 30-May-2019 23:27:08 | Step 1/7 : FROM python:3.5 |
| 30-May-2019 23:27:08 | ---> 74a0040526f9 |
| 30-May-2019 23:27:08 | Step 2/7 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq/%2F" |
| 30-May-2019 23:27:08 | ---> Using cache |
| 30-May-2019 23:27:08 | ---> 5a32a85f447e |
| 30-May-2019 23:27:08 | Step 3/7 : EXPOSE 9999 |
| 30-May-2019 23:27:08 | ---> Using cache |
| 30-May-2019 23:27:08 | ---> 337a1aeaf454 |
| 30-May-2019 23:27:08 | Step 4/7 : RUN pip install pika==0.11.2 requests==2.18.4 |
| 30-May-2019 23:27:08 | ---> Using cache |
| 30-May-2019 23:27:08 | ---> ed000a685d11 |
| 30-May-2019 23:27:08 | Step 5/7 : WORKDIR /src |
| 30-May-2019 23:27:08 | ---> Using cache |
| 30-May-2019 23:27:08 | ---> 53923ce19092 |
| 30-May-2019 23:27:08 | Step 6/7 : COPY monitor.py /src/ |
| 30-May-2019 23:27:08 | ---> Using cache |
| 30-May-2019 23:27:08 | ---> 7b6191bf8e92 |
| 30-May-2019 23:27:08 | Step 7/7 : CMD python monitor.py |
| 30-May-2019 23:27:08 | ---> Using cache |
| 30-May-2019 23:27:08 | ---> e292e6c4f2e2 |
| 30-May-2019 23:27:08 | Successfully built e292e6c4f2e2 |
| 30-May-2019 23:27:08 | Successfully tagged clowder/extractors-monitor:latest |
| 30-May-2019 23:27:08 | Finished task 'docker build' with result: Success |
| 30-May-2019 23:27:08 | Starting task 'docker push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' |
| 30-May-2019 23:27:08 | Beginning to execute external process for build 'Clowder - pyclowder2 - bugfix-BD-2345-open-extractor-info-json-with-utf-8-encoding - Default Job #2 (CATS-PYC299-JOB1-2)' ... running command line: /bin/sh release.sh ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC299-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm bamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster bamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node bamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster bamboo_planRepository_1_branchDisplayName=bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_repository_revision_number=a54e1410f4217209bc72e2af5b2266ead7d08a0d bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC299-JOB1-2 bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build bamboo_repository_170524726_branch_name=bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC299-JOB1 bamboo_planRepository_1_name=pyclowder2 bamboo_buildKey=CATS-PYC299-JOB1 bamboo_capability_system_os=linux bamboo_shortPlanName=bugfix-BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_repository_170524726_previous_revision_number=8c97747b1d0882a0524eb5885c4f82791a45c25d bamboo_planRepository_name=pyclowder2 bamboo_repository_170524726_git_username= bamboo_buildNumber=2 bamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt bamboo_shortJobName=Default Job bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC299-JOB1-2 bamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_agentId=143032321 bamboo_planName=Clowder - pyclowder2 - bugfix-BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_6=/home/bamboo/bamboo-agent-home/temp/CATS-PYC299-JOB1-2-ScriptBuildTask-9012133832384737066.sh bamboo_shortPlanKey=PYC299 bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt bamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node bamboo_shortJobKey=JOB1 bamboo_planRepository_revision=a54e1410f4217209bc72e2af5b2266ead7d08a0d bamboo_buildTimeStamp=2019-05-30T23:21:47.421-05:00 bamboo_repository_previous_revision_number=8c97747b1d0882a0524eb5885c4f82791a45c25d bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1 bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_3=/home/bamboo/bamboo-agent-home/temp/CATS-PYC299-JOB1-2-ScriptBuildTask-3919310685512841381.sh bamboo_planRepository_previousRevision=8c97747b1d0882a0524eb5885c4f82791a45c25d bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_2=/bin/sh docker.sh bamboo_repository_170524726_revision_number=a54e1410f4217209bc72e2af5b2266ead7d08a0d bamboo_repository_git_branch=bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_buildResultKey=CATS-PYC299-JOB1-2 bamboo_repository_branch_name=bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_buildPlanName=Clowder - pyclowder2 - bugfix-BD-2345-open-extractor-info-json-with-utf-8-encoding - Default Job bamboo_planRepository_1_revision=a54e1410f4217209bc72e2af5b2266ead7d08a0d bamboo_capability_system_builder_command_python3=/usr/bin/python3 bamboo_repository_170524726_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_repository_name=pyclowder2 bamboo_repository_170524726_name=pyclowder2 bamboo_repository_170524726_git_branch=bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_buildFailed=false bamboo_capability_system_docker_executable=/usr/bin/docker bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt bamboo_planRepository_branch=bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir bamboo_capability_system_git_executable=/usr/bin/git bamboo_repository_git_username= bamboo_planRepository_1_previousRevision=8c97747b1d0882a0524eb5885c4f82791a45c25d bamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13 bamboo_planRepository_branchDisplayName=bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs bamboo_planRepository_1_type=bbserver bamboo_planRepository_branchName=bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7 bamboo_capability_system_hostname=buildserver-1 bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66 bamboo_capability_system_software_mongo=/usr/bin/mongo bamboo_plan_storageTag=plan-170328171 bamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66 bamboo_planRepository_1_username= bamboo_planRepository_type=bbserver bamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache bamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node bamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4 bamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9 bamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC299-JOB1 bamboo_planKey=CATS-PYC299 bamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_planRepository_username= bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66 bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41 bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60 bamboo_planRepository_1_branchName=bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding |
| 30-May-2019 23:27:08 | Sending build context to Docker daemon 281.1kB |
| 30-May-2019 23:27:08 | |
| 30-May-2019 23:27:08 | Step 1/9 : FROM ubuntu:16.04 |
| 30-May-2019 23:27:08 | ---> 2a697363a870 |
| 30-May-2019 23:27:08 | Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" |
| 30-May-2019 23:27:08 | ---> Using cache |
| 30-May-2019 23:27:08 | ---> 07339c96c1a7 |
| 30-May-2019 23:27:08 | Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* |
| 30-May-2019 23:27:08 | ---> Using cache |
| 30-May-2019 23:27:08 | ---> 66b8b13e8095 |
| 30-May-2019 23:27:08 | Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder |
| 30-May-2019 23:27:08 | ---> Using cache |
| 30-May-2019 23:27:08 | ---> d8c1b0c331b0 |
| 30-May-2019 23:27:08 | Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/ |
| 30-May-2019 23:27:08 | ---> Using cache |
| 30-May-2019 23:27:08 | ---> 53f00a224aaa |
| 30-May-2019 23:27:08 | Step 6/9 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder |
| 30-May-2019 23:27:08 | ---> Using cache |
| 30-May-2019 23:27:08 | ---> eee101981043 |
| 30-May-2019 23:27:08 | Step 7/9 : WORKDIR /home/clowder |
| 30-May-2019 23:27:08 | ---> Using cache |
| 30-May-2019 23:27:08 | ---> c91f4b8f86bc |
| 30-May-2019 23:27:08 | Step 8/9 : COPY notifications.json /home/clowder |
| 30-May-2019 23:27:08 | ---> Using cache |
| 30-May-2019 23:27:08 | ---> dbc4c8fabc3a |
| 30-May-2019 23:27:08 | Step 9/9 : CMD python "./${MAIN_SCRIPT}" |
| 30-May-2019 23:27:08 | ---> Using cache |
| 30-May-2019 23:27:08 | ---> e3941ef228e0 |
| 30-May-2019 23:27:08 | Successfully built e3941ef228e0 |
| 30-May-2019 23:27:08 | Successfully tagged clowder/pyclowder:latest |
| 30-May-2019 23:27:08 | Sending build context to Docker daemon 279.6kB |
| 30-May-2019 23:27:08 | |
| 30-May-2019 23:27:08 | Step 1/6 : FROM clowder/pyclowder |
| 30-May-2019 23:27:08 | ---> e3941ef228e0 |
| 30-May-2019 23:27:08 | Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 30-May-2019 23:27:08 | ---> Using cache |
| 30-May-2019 23:27:08 | ---> b373d4266138 |
| 30-May-2019 23:27:08 | Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 30-May-2019 23:27:08 | ---> Using cache |
| 30-May-2019 23:27:08 | ---> 8fd45ef39137 |
| 30-May-2019 23:27:08 | Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
| 30-May-2019 23:27:08 | ---> Using cache |
| 30-May-2019 23:27:08 | ---> c483dc4e92f2 |
| 30-May-2019 23:27:08 | Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
| 30-May-2019 23:27:08 | ---> Using cache |
| 30-May-2019 23:27:08 | ---> d19ae6315361 |
| 30-May-2019 23:27:08 | Step 6/6 : ONBUILD ADD . /home/clowder/ |
| 30-May-2019 23:27:08 | ---> Using cache |
| 30-May-2019 23:27:08 | ---> 826af52f4fb4 |
| 30-May-2019 23:27:08 | Successfully built 826af52f4fb4 |
| 30-May-2019 23:27:09 | Successfully tagged clowder/pyclowder:onbuild |
| 30-May-2019 23:27:09 | Sending build context to Docker daemon 12.8kB |
| 30-May-2019 23:27:09 | |
| 30-May-2019 23:27:09 | Step 1/5 : FROM clowder/pyclowder:onbuild |
| 30-May-2019 23:27:09 | # Executing 5 build triggers |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> 1b2b7fc9f69e |
| 30-May-2019 23:27:09 | Step 2/5 : ENV MAIN_SCRIPT="binary_extractor.py" RABBITMQ_QUEUE="" IMAGE_BINARY="" IMAGE_TYPE="" IMAGE_THUMBNAIL_COMMAND="" IMAGE_PREVIEW_COMMAND="" PREVIEW_BINARY="" PREVIEW_TYPE="" PREVIEW_COMMAND="" |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> 24756082800c |
| 30-May-2019 23:27:09 | Step 3/5 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> f536f83844cf |
| 30-May-2019 23:27:09 | Step 4/5 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> e26084fcad02 |
| 30-May-2019 23:27:09 | Step 5/5 : ONBUILD COPY extractor_info.json /home/clowder/ |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> 2dfbb5176899 |
| 30-May-2019 23:27:09 | Successfully built 2dfbb5176899 |
| 30-May-2019 23:27:09 | Successfully tagged clowder/extractors-binary-preview:onbuild |
| 30-May-2019 23:27:09 | Sending build context to Docker daemon 6.656kB |
| 30-May-2019 23:27:09 | |
| 30-May-2019 23:27:09 | Step 1/9 : FROM clowder/pyclowder:onbuild |
| 30-May-2019 23:27:09 | # Executing 5 build triggers |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> 86ff6d69b221 |
| 30-May-2019 23:27:09 | Step 2/9 : ENV EXTRACTION_FUNC="" |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> af366a91ccdd |
| 30-May-2019 23:27:09 | Step 3/9 : ENV EXTRACTION_MODULE="" |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> 5ccb678d30c6 |
| 30-May-2019 23:27:09 | Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> 5508388d0713 |
| 30-May-2019 23:27:09 | Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> a015d01ce7f7 |
| 30-May-2019 23:27:09 | Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> 55cac8451e2f |
| 30-May-2019 23:27:09 | Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> 508f78486461 |
| 30-May-2019 23:27:09 | Step 8/9 : ONBUILD ADD . /home/clowder/ |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> f5d1282df646 |
| 30-May-2019 23:27:09 | Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> c6fdc7456e56 |
| 30-May-2019 23:27:09 | Successfully built c6fdc7456e56 |
| 30-May-2019 23:27:09 | Successfully tagged clowder/extractors-simple-extractor:onbuild |
| 30-May-2019 23:27:09 | Sending build context to Docker daemon 13.31kB |
| 30-May-2019 23:27:09 | |
| 30-May-2019 23:27:09 | Step 1/10 : FROM clowder/pyclowder:latest |
| 30-May-2019 23:27:09 | ---> e3941ef228e0 |
| 30-May-2019 23:27:09 | Step 2/10 : ENV R_SCRIPT="" R_FUNCTION="" |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> 4b8f93c5517d |
| 30-May-2019 23:27:09 | Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> 2d3760fa8fb4 |
| 30-May-2019 23:27:09 | Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/ |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> 6989934b3b5d |
| 30-May-2019 23:27:09 | Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> d0e5a7a64f6f |
| 30-May-2019 23:27:09 | Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> 005a099d3f4a |
| 30-May-2019 23:27:09 | Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> 7cc834a1f567 |
| 30-May-2019 23:27:09 | Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> 634c6259d143 |
| 30-May-2019 23:27:09 | Step 9/10 : ONBUILD ADD . /home/clowder/ |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> a3d77f40c658 |
| 30-May-2019 23:27:09 | Step 10/10 : CMD python r_extractor.py |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> 4a56839e2505 |
| 30-May-2019 23:27:09 | Successfully built 4a56839e2505 |
| 30-May-2019 23:27:09 | Successfully tagged clowder/extractors-simple-r-extractor:onbuild |
| 30-May-2019 23:27:09 | Sending build context to Docker daemon 281.1kB |
| 30-May-2019 23:27:09 | |
| 30-May-2019 23:27:09 | Step 1/9 : FROM ubuntu:16.04 |
| 30-May-2019 23:27:09 | ---> 2a697363a870 |
| 30-May-2019 23:27:09 | Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> 07339c96c1a7 |
| 30-May-2019 23:27:09 | Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> 66b8b13e8095 |
| 30-May-2019 23:27:09 | Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> d8c1b0c331b0 |
| 30-May-2019 23:27:09 | Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/ |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> 53f00a224aaa |
| 30-May-2019 23:27:09 | Step 6/9 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> eee101981043 |
| 30-May-2019 23:27:09 | Step 7/9 : WORKDIR /home/clowder |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> c91f4b8f86bc |
| 30-May-2019 23:27:09 | Step 8/9 : COPY notifications.json /home/clowder |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> dbc4c8fabc3a |
| 30-May-2019 23:27:09 | Step 9/9 : CMD python "./${MAIN_SCRIPT}" |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> e3941ef228e0 |
| 30-May-2019 23:27:09 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
| 30-May-2019 23:27:09 | Successfully built e3941ef228e0 |
| 30-May-2019 23:27:09 | Successfully tagged clowder/pyclowder-python3:latest |
| 30-May-2019 23:27:09 | Sending build context to Docker daemon 279.6kB |
| 30-May-2019 23:27:09 | |
| 30-May-2019 23:27:09 | Step 1/6 : FROM clowder/pyclowder |
| 30-May-2019 23:27:09 | ---> e3941ef228e0 |
| 30-May-2019 23:27:09 | Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> b373d4266138 |
| 30-May-2019 23:27:09 | Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> 8fd45ef39137 |
| 30-May-2019 23:27:09 | Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> c483dc4e92f2 |
| 30-May-2019 23:27:09 | Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> d19ae6315361 |
| 30-May-2019 23:27:09 | Step 6/6 : ONBUILD ADD . /home/clowder/ |
| 30-May-2019 23:27:09 | ---> Using cache |
| 30-May-2019 23:27:09 | ---> 826af52f4fb4 |
| 30-May-2019 23:27:09 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
| 30-May-2019 23:27:09 | Successfully built 826af52f4fb4 |
| 30-May-2019 23:27:09 | Successfully tagged clowder/pyclowder-python3:onbuild |
| 30-May-2019 23:27:09 | Sending build context to Docker daemon 6.656kB |
| 30-May-2019 23:27:09 | |
| 30-May-2019 23:27:10 | Step 1/9 : FROM clowder/pyclowder:onbuild |
| 30-May-2019 23:27:10 | # Executing 5 build triggers |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> 86ff6d69b221 |
| 30-May-2019 23:27:10 | Step 2/9 : ENV EXTRACTION_FUNC="" |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> af366a91ccdd |
| 30-May-2019 23:27:10 | Step 3/9 : ENV EXTRACTION_MODULE="" |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> 5ccb678d30c6 |
| 30-May-2019 23:27:10 | Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> 5508388d0713 |
| 30-May-2019 23:27:10 | Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> a015d01ce7f7 |
| 30-May-2019 23:27:10 | Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> 55cac8451e2f |
| 30-May-2019 23:27:10 | Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> 508f78486461 |
| 30-May-2019 23:27:10 | Step 8/9 : ONBUILD ADD . /home/clowder/ |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> f5d1282df646 |
| 30-May-2019 23:27:10 | Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> c6fdc7456e56 |
| 30-May-2019 23:27:10 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
| 30-May-2019 23:27:10 | Successfully built c6fdc7456e56 |
| 30-May-2019 23:27:10 | Successfully tagged clowder/extractors-simple-extractor-python3:onbuild |
| 30-May-2019 23:27:10 | Sending build context to Docker daemon 13.31kB |
| 30-May-2019 23:27:10 | |
| 30-May-2019 23:27:10 | Step 1/10 : FROM clowder/pyclowder:latest |
| 30-May-2019 23:27:10 | ---> e3941ef228e0 |
| 30-May-2019 23:27:10 | Step 2/10 : ENV R_SCRIPT="" R_FUNCTION="" |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> 4b8f93c5517d |
| 30-May-2019 23:27:10 | Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> 2d3760fa8fb4 |
| 30-May-2019 23:27:10 | Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/ |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> 6989934b3b5d |
| 30-May-2019 23:27:10 | Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> d0e5a7a64f6f |
| 30-May-2019 23:27:10 | Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> 005a099d3f4a |
| 30-May-2019 23:27:10 | Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> 7cc834a1f567 |
| 30-May-2019 23:27:10 | Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> 634c6259d143 |
| 30-May-2019 23:27:10 | Step 9/10 : ONBUILD ADD . /home/clowder/ |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> a3d77f40c658 |
| 30-May-2019 23:27:10 | Step 10/10 : CMD python r_extractor.py |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> 4a56839e2505 |
| 30-May-2019 23:27:10 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
| 30-May-2019 23:27:10 | Successfully built 4a56839e2505 |
| 30-May-2019 23:27:10 | Successfully tagged clowder/extractors-simple-r-extractor-python3:onbuild |
| 30-May-2019 23:27:10 | Sending build context to Docker daemon 9.216kB |
| 30-May-2019 23:27:10 | |
| 30-May-2019 23:27:10 | Step 1/2 : FROM clowder/pyclowder:onbuild |
| 30-May-2019 23:27:10 | # Executing 5 build triggers |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> e788ad81d386 |
| 30-May-2019 23:27:10 | Step 2/2 : ENV MAIN_SCRIPT="wordcount.py" |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> e27f64ef2964 |
| 30-May-2019 23:27:10 | Successfully built e27f64ef2964 |
| 30-May-2019 23:27:10 | Successfully tagged clowder/extractors-wordcount:latest |
| 30-May-2019 23:27:10 | Sending build context to Docker daemon 5.12kB |
| 30-May-2019 23:27:10 | |
| 30-May-2019 23:27:10 | Step 1/3 : FROM clowder/extractors-simple-extractor:onbuild |
| 30-May-2019 23:27:10 | # Executing 5 build triggers |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> 522da0dcdafe |
| 30-May-2019 23:27:10 | Step 2/3 : ENV EXTRACTION_FUNC="wordcount" |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> 516a66493328 |
| 30-May-2019 23:27:10 | Step 3/3 : ENV EXTRACTION_MODULE="wordcount" |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> 468500054fc3 |
| 30-May-2019 23:27:10 | Successfully built 468500054fc3 |
| 30-May-2019 23:27:10 | Successfully tagged clowder/extractors-wordcount-simple-extractor:latest |
| 30-May-2019 23:27:10 | Sending build context to Docker daemon 5.12kB |
| 30-May-2019 23:27:10 | |
| 30-May-2019 23:27:10 | Step 1/2 : FROM clowder/extractors-simple-r-extractor:onbuild |
| 30-May-2019 23:27:10 | # Executing 5 build triggers |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> e0c4a7b48e6b |
| 30-May-2019 23:27:10 | Step 2/2 : ENV R_SCRIPT="wordcount.R" R_FUNCTION="process_file" |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> 7d13c83a3f92 |
| 30-May-2019 23:27:10 | Successfully built 7d13c83a3f92 |
| 30-May-2019 23:27:10 | Successfully tagged clowder/extractors-wordcount-simple-r-extractor:latest |
| 30-May-2019 23:27:10 | Sending build context to Docker daemon 8.192kB |
| 30-May-2019 23:27:10 | |
| 30-May-2019 23:27:10 | Step 1/7 : FROM python:3.5 |
| 30-May-2019 23:27:10 | ---> 74a0040526f9 |
| 30-May-2019 23:27:10 | Step 2/7 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq/%2F" |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> 5a32a85f447e |
| 30-May-2019 23:27:10 | Step 3/7 : EXPOSE 9999 |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> 337a1aeaf454 |
| 30-May-2019 23:27:10 | Step 4/7 : RUN pip install pika==0.11.2 requests==2.18.4 |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> ed000a685d11 |
| 30-May-2019 23:27:10 | Step 5/7 : WORKDIR /src |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> 53923ce19092 |
| 30-May-2019 23:27:10 | Step 6/7 : COPY monitor.py /src/ |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> 7b6191bf8e92 |
| 30-May-2019 23:27:10 | Step 7/7 : CMD python monitor.py |
| 30-May-2019 23:27:10 | ---> Using cache |
| 30-May-2019 23:27:10 | ---> e292e6c4f2e2 |
| 30-May-2019 23:27:10 | Successfully built e292e6c4f2e2 |
| 30-May-2019 23:27:10 | Successfully tagged clowder/extractors-monitor:latest |
| 30-May-2019 23:27:10 | Finished task 'docker push' with result: Success |
| 30-May-2019 23:27:10 | Starting task 'test results' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit' |
| 30-May-2019 23:27:10 | Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC299-JOB1... |
| 30-May-2019 23:27:10 | Finished task 'test results' with result: Success |
| 30-May-2019 23:27:10 | Running post build plugin 'Docker Container Cleanup' |
| 30-May-2019 23:27:10 | Running post build plugin 'NCover Results Collector' |
| 30-May-2019 23:27:10 | Running post build plugin 'Clover Results Collector' |
| 30-May-2019 23:27:10 | Running post build plugin 'npm Cache Cleanup' |
| 30-May-2019 23:27:10 | Running post build plugin 'Artifact Copier' |
| 30-May-2019 23:27:10 | Finalising the build... |
| 30-May-2019 23:27:10 | Stopping timer. |
| 30-May-2019 23:27:10 | Build CATS-PYC299-JOB1-2 completed. |
| 30-May-2019 23:27:11 | Running on server: post build plugin 'NCover Results Collector' |
| 30-May-2019 23:27:11 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 30-May-2019 23:27:11 | Running on server: post build plugin 'Clover Delta Calculator' |
| 30-May-2019 23:27:11 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 30-May-2019 23:27:11 | All post build plugins have finished |
| 30-May-2019 23:27:11 | Generating build results summary... |
| 30-May-2019 23:27:11 | Saving build results to disk... |
| 30-May-2019 23:27:11 | Logging substituted variables... |
| 30-May-2019 23:27:11 | Indexing build results... |
| 30-May-2019 23:27:11 | Finished building CATS-PYC299-JOB1-2. |