simple 10-Jul-2019 23:29:48 Build BrownDog - semanticservice - Default Job #2 (BD-SEM-JOB1-2) started building on agent buildserver-3.os.ncsa.edu simple 10-Jul-2019 23:29:48 Remote agent on host buildserver-3.os.ncsa.edu simple 10-Jul-2019 23:29:48 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/BD-SEM-JOB1 simple 10-Jul-2019 23:29:48 Executing build BrownDog - semanticservice - Default Job #2 (BD-SEM-JOB1-2) simple 10-Jul-2019 23:29:48 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 10-Jul-2019 23:29:48 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/BD-SEM-JOB1 simple 10-Jul-2019 23:29:48 Updating source code to revision: a37d3af7dfb4687b89187e507285279500d57dc3 simple 10-Jul-2019 23:29:48 Enforcing full fetch as requested revision has not been found on the configured branch simple 10-Jul-2019 23:29:48 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache/2c97c17bf72727f8c604198b58b2da5504ce9188/.git'. simple 10-Jul-2019 23:29:48 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache/2c97c17bf72727f8c604198b58b2da5504ce9188/.git/ simple 10-Jul-2019 23:30:09 Fetching 'refs/heads/*' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/standard-vocabulary-mappings.git'. simple 10-Jul-2019 23:30:09 Warning: Permanently added '[127.0.0.1]:40787' (RSA) to the list of known hosts. simple 10-Jul-2019 23:30:10 From ssh://127.0.0.1:40787/cats/standard-vocabulary-mappings simple 10-Jul-2019 23:30:10 * [new branch] develop -> develop simple 10-Jul-2019 23:30:10 * [new branch] master -> master simple 10-Jul-2019 23:30:10 Checking out revision a37d3af7dfb4687b89187e507285279500d57dc3. simple 10-Jul-2019 23:30:10 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/BD-SEM-JOB1/.git'. simple 10-Jul-2019 23:30:10 Cloning into '/home/bamboo/bamboo-agent-home/xml-data/build-dir/BD-SEM-JOB1'... simple 10-Jul-2019 23:30:10 done. simple 10-Jul-2019 23:30:10 Already on 'master' simple 10-Jul-2019 23:30:10 Your branch is up-to-date with 'origin/master'. simple 10-Jul-2019 23:30:10 Updated source code to revision: a37d3af7dfb4687b89187e507285279500d57dc3 simple 10-Jul-2019 23:30:10 Finished task 'Checkout Default Repository' with result: Success simple 10-Jul-2019 23:30:10 Running pre-build action: VCS Version Collector simple 10-Jul-2019 23:30:10 Starting task 'docker build' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 10-Jul-2019 23:30:10 Beginning to execute external process for build 'BrownDog - semanticservice - Default Job #2 (BD-SEM-JOB1-2)'\n ... running command line: \n/bin/sh docker.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/BD-SEM-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=master\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_planRepository_1_branchDisplayName=master\nbamboo_repository_revision_number=a37d3af7dfb4687b89187e507285279500d57dc3\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/BD-SEM-JOB1-2\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/BD-SEM-JOB1\nbamboo_planRepository_1_name=semanticservice\nbamboo_buildKey=BD-SEM-JOB1\nbamboo_capability_system_os=linux\nbamboo_repository_166953006_revision_number=a37d3af7dfb4687b89187e507285279500d57dc3\nbamboo_shortPlanName=semanticservice\nbamboo_planRepository_name=semanticservice\nbamboo_repository_166953006_name=semanticservice\nbamboo_repository_166953006_branch_name=master\nbamboo_repository_166953006_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/standard-vocabulary-mappings.git\nbamboo_buildNumber=2\nbamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt\nbamboo_shortJobName=Default 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Job\nbamboo_planRepository_1_revision=a37d3af7dfb4687b89187e507285279500d57dc3\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=semanticservice\nbamboo_buildFailed=false\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_branch=master\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=28ce5ee48425c9a64b5a58df21daeaf11ca1fdb3\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_planRepository_branchDisplayName=master\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=master\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_repository_166953006_previous_revision_number=28ce5ee48425c9a64b5a58df21daeaf11ca1fdb3\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-166756443\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/standard-vocabulary-mappings.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/BD-SEM-JOB1\nbamboo_planKey=BD-SEM\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/standard-vocabulary-mappings.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_1_branchName=master\n build 10-Jul-2019 23:30:10 Sending build context to Docker daemon 58.88kB build 10-Jul-2019 23:30:10 build 10-Jul-2019 23:30:10 Step 1/8 : FROM python:3-alpine build 10-Jul-2019 23:30:11 3-alpine: Pulling from library/python build 10-Jul-2019 23:30:11 921b31ab772b: Pulling fs layer build 10-Jul-2019 23:30:11 1a0c422ed526: Pulling fs layer build 10-Jul-2019 23:30:11 3f995998f0d2: Pulling fs layer build 10-Jul-2019 23:30:11 1e10683833cd: Pulling fs layer build 10-Jul-2019 23:30:11 57b74f627661: Pulling fs layer build 10-Jul-2019 23:30:11 1e10683833cd: Waiting build 10-Jul-2019 23:30:11 57b74f627661: Waiting build 10-Jul-2019 23:30:11 1a0c422ed526: Verifying Checksum build 10-Jul-2019 23:30:11 1a0c422ed526: Download complete build 10-Jul-2019 23:30:11 921b31ab772b: Verifying Checksum build 10-Jul-2019 23:30:11 921b31ab772b: Download complete build 10-Jul-2019 23:30:11 1e10683833cd: Verifying Checksum build 10-Jul-2019 23:30:11 1e10683833cd: Download complete build 10-Jul-2019 23:30:12 57b74f627661: Verifying Checksum build 10-Jul-2019 23:30:12 57b74f627661: Download complete build 10-Jul-2019 23:30:12 921b31ab772b: Pull complete build 10-Jul-2019 23:30:12 3f995998f0d2: Verifying Checksum build 10-Jul-2019 23:30:12 3f995998f0d2: Download complete build 10-Jul-2019 23:30:12 1a0c422ed526: Pull complete build 10-Jul-2019 23:30:14 3f995998f0d2: Pull complete build 10-Jul-2019 23:30:14 1e10683833cd: Pull complete build 10-Jul-2019 23:30:14 57b74f627661: Pull complete build 10-Jul-2019 23:30:15 Digest: sha256:fabd15bc1b5c6f4097cabae02122250f51d6fda4ab4729d1ba17f01028a7fc15 build 10-Jul-2019 23:30:15 Status: Downloaded newer image for python:3-alpine build 10-Jul-2019 23:30:15 ---> 828bce60a61c build 10-Jul-2019 23:30:15 Step 2/8 : MAINTAINER Sandeep Puthanveetil Satheesan build 10-Jul-2019 23:30:15 ---> Running in af6873eb1137 build 10-Jul-2019 23:30:15 Removing intermediate container af6873eb1137 build 10-Jul-2019 23:30:15 ---> ef8e3f470868 build 10-Jul-2019 23:30:15 Step 3/8 : COPY ./requirements.txt /app/requirements.txt build 10-Jul-2019 23:30:15 ---> 4353d7a11a34 build 10-Jul-2019 23:30:15 Step 4/8 : RUN pip install -r /app/requirements.txt build 10-Jul-2019 23:30:16 ---> Running in d8e9650898ad build 10-Jul-2019 23:30:18 Collecting flask==1.0.2 (from -r /app/requirements.txt (line 1)) build 10-Jul-2019 23:30:18 Downloading https://files.pythonhosted.org/packages/7f/e7/08578774ed4536d3242b14dacb4696386634607af824ea997202cd0edb4b/Flask-1.0.2-py2.py3-none-any.whl (91kB) build 10-Jul-2019 23:30:18 Collecting Flask-PyMongo==2.2.0 (from -r /app/requirements.txt (line 2)) build 10-Jul-2019 23:30:18 Downloading https://files.pythonhosted.org/packages/d5/c8/22ddacfe05893884dceef5b9ecfa683f947ba155bd63cd9d841aea29b7b7/Flask_PyMongo-2.2.0-py2.py3-none-any.whl build 10-Jul-2019 23:30:18 Collecting gunicorn==19.9.0 (from -r /app/requirements.txt (line 3)) build 10-Jul-2019 23:30:18 Downloading https://files.pythonhosted.org/packages/8c/da/b8dd8deb741bff556db53902d4706774c8e1e67265f69528c14c003644e6/gunicorn-19.9.0-py2.py3-none-any.whl (112kB) build 10-Jul-2019 23:30:18 Collecting configparser==3.5.0 (from -r /app/requirements.txt (line 4)) build 10-Jul-2019 23:30:18 Downloading https://files.pythonhosted.org/packages/7c/69/c2ce7e91c89dc073eb1aa74c0621c3eefbffe8216b3f9af9d3885265c01c/configparser-3.5.0.tar.gz build 10-Jul-2019 23:30:18 Collecting itsdangerous>=0.24 (from flask==1.0.2->-r /app/requirements.txt (line 1)) build 10-Jul-2019 23:30:18 Downloading https://files.pythonhosted.org/packages/76/ae/44b03b253d6fade317f32c24d100b3b35c2239807046a4c953c7b89fa49e/itsdangerous-1.1.0-py2.py3-none-any.whl build 10-Jul-2019 23:30:18 Collecting Jinja2>=2.10 (from flask==1.0.2->-r /app/requirements.txt (line 1)) build 10-Jul-2019 23:30:19 Downloading https://files.pythonhosted.org/packages/1d/e7/fd8b501e7a6dfe492a433deb7b9d833d39ca74916fa8bc63dd1a4947a671/Jinja2-2.10.1-py2.py3-none-any.whl (124kB) build 10-Jul-2019 23:30:19 Collecting Werkzeug>=0.14 (from flask==1.0.2->-r /app/requirements.txt (line 1)) build 10-Jul-2019 23:30:19 Downloading https://files.pythonhosted.org/packages/9f/57/92a497e38161ce40606c27a86759c6b92dd34fcdb33f64171ec559257c02/Werkzeug-0.15.4-py2.py3-none-any.whl (327kB) build 10-Jul-2019 23:30:19 Collecting click>=5.1 (from flask==1.0.2->-r /app/requirements.txt (line 1)) build 10-Jul-2019 23:30:19 Downloading https://files.pythonhosted.org/packages/fa/37/45185cb5abbc30d7257104c434fe0b07e5a195a6847506c074527aa599ec/Click-7.0-py2.py3-none-any.whl (81kB) build 10-Jul-2019 23:30:19 Collecting PyMongo>=3.0 (from Flask-PyMongo==2.2.0->-r /app/requirements.txt (line 2)) build 10-Jul-2019 23:30:19 Downloading https://files.pythonhosted.org/packages/19/77/da358f5729ff046ceaf6c6a86755f9d8285719f93df6da15bb2440367d7e/pymongo-3.8.0.tar.gz (649kB) build 10-Jul-2019 23:30:20 Collecting MarkupSafe>=0.23 (from Jinja2>=2.10->flask==1.0.2->-r /app/requirements.txt (line 1)) build 10-Jul-2019 23:30:20 Downloading https://files.pythonhosted.org/packages/b9/2e/64db92e53b86efccfaea71321f597fa2e1b2bd3853d8ce658568f7a13094/MarkupSafe-1.1.1.tar.gz build 10-Jul-2019 23:30:20 Building wheels for collected packages: configparser, PyMongo, MarkupSafe build 10-Jul-2019 23:30:20 Building wheel for configparser (setup.py): started build 10-Jul-2019 23:30:20 Building wheel for configparser (setup.py): finished with status 'done' build 10-Jul-2019 23:30:20 Stored in directory: /root/.cache/pip/wheels/a3/61/79/424ef897a2f3b14684a7de5d89e8600b460b89663e6ce9d17c build 10-Jul-2019 23:30:20 Building wheel for PyMongo (setup.py): started build 10-Jul-2019 23:30:21 Building wheel for PyMongo (setup.py): finished with status 'done' build 10-Jul-2019 23:30:21 Stored in directory: /root/.cache/pip/wheels/d2/b1/31/73cf054f56088d94e40e58dc7b6400ec2907a67b77a8367efb build 10-Jul-2019 23:30:21 Building wheel for MarkupSafe (setup.py): started build 10-Jul-2019 23:30:21 Building wheel for MarkupSafe (setup.py): finished with status 'done' build 10-Jul-2019 23:30:21 Stored in directory: /root/.cache/pip/wheels/f2/aa/04/0edf07a1b8a5f5f1aed7580fffb69ce8972edc16a505916a77 build 10-Jul-2019 23:30:21 Successfully built configparser PyMongo MarkupSafe build 10-Jul-2019 23:30:21 Installing collected packages: itsdangerous, MarkupSafe, Jinja2, Werkzeug, click, flask, PyMongo, Flask-PyMongo, gunicorn, configparser build 10-Jul-2019 23:30:22 Successfully installed Flask-PyMongo-2.2.0 Jinja2-2.10.1 MarkupSafe-1.1.1 PyMongo-3.8.0 Werkzeug-0.15.4 click-7.0 configparser-3.5.0 flask-1.0.2 gunicorn-19.9.0 itsdangerous-1.1.0 build 10-Jul-2019 23:30:24 Removing intermediate container d8e9650898ad build 10-Jul-2019 23:30:24 ---> 19684e199916 build 10-Jul-2019 23:30:24 Step 5/8 : COPY ./*.py /app/ build 10-Jul-2019 23:30:24 ---> 438407e8a219 build 10-Jul-2019 23:30:24 Step 6/8 : COPY ./docker.ini /app/config.ini build 10-Jul-2019 23:30:24 ---> 821301ef3797 build 10-Jul-2019 23:30:24 Step 7/8 : WORKDIR /app build 10-Jul-2019 23:30:25 ---> Running in 41b18ca5564f build 10-Jul-2019 23:30:25 Removing intermediate container 41b18ca5564f build 10-Jul-2019 23:30:25 ---> 37e87de02b11 build 10-Jul-2019 23:30:25 Step 8/8 : CMD [ "gunicorn", "-w 4", "-b 0.0.0.0:5000", "app:app"] build 10-Jul-2019 23:30:25 ---> Running in 6e0c6ee7958d build 10-Jul-2019 23:30:25 Removing intermediate container 6e0c6ee7958d build 10-Jul-2019 23:30:25 ---> f3c375626603 build 10-Jul-2019 23:30:25 Successfully built f3c375626603 build 10-Jul-2019 23:30:26 Successfully tagged clowder/standard-vocabulary-mapping-service:latest simple 10-Jul-2019 23:30:26 Finished task 'docker build' with result: Success simple 10-Jul-2019 23:30:26 Running post build plugin 'Docker Container Cleanup' simple 10-Jul-2019 23:30:26 Running post build plugin 'NCover Results Collector' simple 10-Jul-2019 23:30:26 Running post build plugin 'Clover Results Collector' simple 10-Jul-2019 23:30:26 Running post build plugin 'npm Cache Cleanup' simple 10-Jul-2019 23:30:26 Running post build plugin 'Artifact Copier' simple 10-Jul-2019 23:30:26 Finalising the build... simple 10-Jul-2019 23:30:26 Stopping timer. simple 10-Jul-2019 23:30:26 Build BD-SEM-JOB1-2 completed. simple 10-Jul-2019 23:30:26 Running on server: post build plugin 'NCover Results Collector' simple 10-Jul-2019 23:30:26 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 10-Jul-2019 23:30:26 Running on server: post build plugin 'Clover Delta Calculator' simple 10-Jul-2019 23:30:26 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 10-Jul-2019 23:30:26 All post build plugins have finished simple 10-Jul-2019 23:30:26 Generating build results summary... simple 10-Jul-2019 23:30:26 Saving build results to disk... simple 10-Jul-2019 23:30:26 Logging substituted variables... simple 10-Jul-2019 23:30:26 Indexing build results... simple 10-Jul-2019 23:30:27 Finished building BD-SEM-JOB1-2.