simple 21-Mar-2018 14:03:37 Build Clowder - extractors-dbpedia - Default Job #31 (CATS-EXDBP-JOB1-31) started building on agent buildserver-2.os.ncsa.edu simple 21-Mar-2018 14:03:37 Remote agent on host buildserver-2.os.ncsa.edu simple 21-Mar-2018 14:03:37 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1 simple 21-Mar-2018 14:03:37 Executing build Clowder - extractors-dbpedia - Default Job #31 (CATS-EXDBP-JOB1-31) simple 21-Mar-2018 14:03:37 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 21-Mar-2018 14:03:37 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1 simple 21-Mar-2018 14:03:37 Updating source code to revision: 41c21decd56c8a967bf1fdb5d4d284f6b3b0de41 simple 21-Mar-2018 14:03:37 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1/.git'. simple 21-Mar-2018 14:03:37 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1/.git/ simple 21-Mar-2018 14:03:37 Fetching 'refs/heads/master' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-dbpedia.git'. Will try to do a shallow fetch. simple 21-Mar-2018 14:03:37 Warning: Permanently added '[127.0.0.1]:33639' (RSA) to the list of known hosts. simple 21-Mar-2018 14:03:37 From ssh://127.0.0.1:33639/cats/extractors-dbpedia simple 21-Mar-2018 14:03:37 * [new branch] master -> master simple 21-Mar-2018 14:03:37 * [new tag] browndog_v0.2.0 -> browndog_v0.2.0 simple 21-Mar-2018 14:03:37 * [new tag] browndog_v0.3.0 -> browndog_v0.3.0 simple 21-Mar-2018 14:03:37 Checking out revision 41c21decd56c8a967bf1fdb5d4d284f6b3b0de41. simple 21-Mar-2018 14:03:37 Already on 'master' simple 21-Mar-2018 14:03:37 Updated source code to revision: 41c21decd56c8a967bf1fdb5d4d284f6b3b0de41 simple 21-Mar-2018 14:03:37 Finished task 'Checkout Default Repository' with result: Success simple 21-Mar-2018 14:03:37 Running pre-build action: VCS Version Collector simple 21-Mar-2018 14:03:38 Starting task 'docker build' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 21-Mar-2018 14:03:38 Beginning to execute external process for build 'Clowder - extractors-dbpedia - Default Job #31 (CATS-EXDBP-JOB1-31)'\n ... running command line: \n/bin/sh docker.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=master\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_dependency_parent_0=CATS-PYC2-67\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_dependency_parent_total=1\nbamboo_planRepository_1_branchDisplayName=master\nbamboo_repository_revision_number=41c21decd56c8a967bf1fdb5d4d284f6b3b0de41\nbamboo_repository_120946696_revision_number=41c21decd56c8a967bf1fdb5d4d284f6b3b0de41\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-EXDBP-JOB1-31\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1\nbamboo_planRepository_1_name=extractors-dbpedia\nbamboo_buildKey=CATS-EXDBP-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=extractors-dbpedia\nbamboo_planRepository_name=extractors-dbpedia\nbamboo_buildNumber=31\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-EXDBP-JOB1-31\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-dbpedia.git\nbamboo_agentId=140673028\nbamboo_planName=Clowder - extractors-dbpedia\nbamboo_shortPlanKey=EXDBP\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_shortJobKey=JOB1\nbamboo_planRepository_revision=41c21decd56c8a967bf1fdb5d4d284f6b3b0de41\nbamboo_buildTimeStamp=2018-03-21T13:57:13.639-05:00\nbamboo_repository_previous_revision_number=41c21decd56c8a967bf1fdb5d4d284f6b3b0de41\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_planRepository_previousRevision=41c21decd56c8a967bf1fdb5d4d284f6b3b0de41\nbamboo_repository_git_branch=master\nbamboo_buildResultKey=CATS-EXDBP-JOB1-31\nbamboo_repository_branch_name=master\nbamboo_buildPlanName=Clowder - extractors-dbpedia - Default Job\nbamboo_planRepository_1_revision=41c21decd56c8a967bf1fdb5d4d284f6b3b0de41\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=extractors-dbpedia\nbamboo_repository_120946696_previous_revision_number=41c21decd56c8a967bf1fdb5d4d284f6b3b0de41\nbamboo_repository_120946696_branch_name=master\nbamboo_buildFailed=false\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_repository_120946696_git_username=\nbamboo_planRepository_branch=master\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_repository_120946696_git_branch=master\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=41c21decd56c8a967bf1fdb5d4d284f6b3b0de41\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_planRepository_branchDisplayName=master\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=master\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_repository_120946696_name=extractors-dbpedia\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-120750095\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-dbpedia.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1\nbamboo_planKey=CATS-EXDBP\nbamboo_repository_120946696_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-dbpedia.git\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-dbpedia.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_1_branchName=master\n build 21-Mar-2018 14:03:38 Sending build context to Docker daemon 163.3 kB build 21-Mar-2018 14:03:38 build 21-Mar-2018 14:03:38 Step 1/13 : FROM clowder/pyclowder:2 build 21-Mar-2018 14:03:38 2: Pulling from clowder/pyclowder build 21-Mar-2018 14:03:38 Digest: sha256:2d81ba3b2d33f429d530867d9817f5ba3e64cd481cbb985dd504d5a28e3672cd build 21-Mar-2018 14:03:38 Status: Image is up to date for clowder/pyclowder:2 build 21-Mar-2018 14:03:38 ---> 663a320bcc68 build 21-Mar-2018 14:03:38 Step 2/13 : MAINTAINER Luigi Marigni build 21-Mar-2018 14:03:38 ---> Running in 548be06359ba build 21-Mar-2018 14:03:39 ---> ee36bcaa5f57 build 21-Mar-2018 14:03:39 Removing intermediate container 548be06359ba build 21-Mar-2018 14:03:39 Step 3/13 : COPY requirements.txt /home/clowder/ build 21-Mar-2018 14:03:39 ---> db2b1a4d1e62 build 21-Mar-2018 14:03:40 Removing intermediate container caa93d8d1250 build 21-Mar-2018 14:03:40 Step 4/13 : USER root build 21-Mar-2018 14:03:40 ---> Running in a513846919f9 build 21-Mar-2018 14:03:40 ---> 36198d1b76de build 21-Mar-2018 14:03:40 Removing intermediate container a513846919f9 build 21-Mar-2018 14:03:40 Step 5/13 : RUN apt-get update && apt-get -y install python-dev python-numpy gcc && pip install -r /home/clowder/requirements.txt build 21-Mar-2018 14:03:41 ---> Running in a047587fca7e build 21-Mar-2018 14:03:42 Get:1 http://security.ubuntu.com/ubuntu xenial-security InRelease [102 kB] build 21-Mar-2018 14:03:42 Get:2 http://archive.ubuntu.com/ubuntu xenial InRelease [247 kB] build 21-Mar-2018 14:03:42 Get:3 http://security.ubuntu.com/ubuntu xenial-security/universe Sources [74.1 kB] build 21-Mar-2018 14:03:42 Get:4 http://security.ubuntu.com/ubuntu xenial-security/main amd64 Packages [592 kB] build 21-Mar-2018 14:03:42 Get:5 http://security.ubuntu.com/ubuntu xenial-security/restricted amd64 Packages [12.7 kB] build 21-Mar-2018 14:03:42 Get:6 http://security.ubuntu.com/ubuntu xenial-security/universe amd64 Packages [409 kB] build 21-Mar-2018 14:03:42 Get:7 http://security.ubuntu.com/ubuntu xenial-security/multiverse amd64 Packages [3492 B] build 21-Mar-2018 14:03:43 Get:8 http://archive.ubuntu.com/ubuntu xenial-updates InRelease [102 kB] build 21-Mar-2018 14:03:43 Get:9 http://archive.ubuntu.com/ubuntu xenial-backports InRelease [102 kB] build 21-Mar-2018 14:03:43 Get:10 http://archive.ubuntu.com/ubuntu xenial/universe Sources [9802 kB] build 21-Mar-2018 14:03:44 Get:11 http://archive.ubuntu.com/ubuntu xenial/main amd64 Packages [1558 kB] build 21-Mar-2018 14:03:44 Get:12 http://archive.ubuntu.com/ubuntu xenial/restricted amd64 Packages [14.1 kB] build 21-Mar-2018 14:03:44 Get:13 http://archive.ubuntu.com/ubuntu xenial/universe amd64 Packages [9827 kB] build 21-Mar-2018 14:03:44 Get:14 http://archive.ubuntu.com/ubuntu xenial/multiverse amd64 Packages [176 kB] build 21-Mar-2018 14:03:44 Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/universe Sources [246 kB] build 21-Mar-2018 14:03:44 Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 Packages [960 kB] build 21-Mar-2018 14:03:44 Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/restricted amd64 Packages [13.1 kB] build 21-Mar-2018 14:03:44 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 Packages [774 kB] build 21-Mar-2018 14:03:44 Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/multiverse amd64 Packages [18.5 kB] build 21-Mar-2018 14:03:44 Get:20 http://archive.ubuntu.com/ubuntu xenial-backports/main amd64 Packages [5153 B] build 21-Mar-2018 14:03:44 Get:21 http://archive.ubuntu.com/ubuntu xenial-backports/universe amd64 Packages [7696 B] build 21-Mar-2018 14:03:45 Fetched 25.0 MB in 3s (7246 kB/s) build 21-Mar-2018 14:03:46 Reading package lists... build 21-Mar-2018 14:03:47 Reading package lists... build 21-Mar-2018 14:03:47 Building dependency tree... build 21-Mar-2018 14:03:47 Reading state information... build 21-Mar-2018 14:03:47 The following additional packages will be installed: build 21-Mar-2018 14:03:47 binutils cpp cpp-5 gcc-5 libasan2 libatomic1 libblas-common libblas3 build 21-Mar-2018 14:03:47 libc-dev-bin libc6-dev libcc1-0 libcilkrts5 libexpat1-dev libgcc-5-dev build 21-Mar-2018 14:03:47 libgfortran3 libgmp10 libgomp1 libisl15 libitm1 liblapack3 liblsan0 libmpc3 build 21-Mar-2018 14:03:47 libmpfr4 libmpx0 libpython-dev libpython2.7 libpython2.7-dev libquadmath0 build 21-Mar-2018 14:03:47 libtsan0 libubsan0 linux-libc-dev manpages manpages-dev python2.7-dev build 21-Mar-2018 14:03:47 Suggested packages: build 21-Mar-2018 14:03:47 binutils-doc cpp-doc gcc-5-locales gcc-multilib make autoconf automake build 21-Mar-2018 14:03:47 libtool flex bison gdb gcc-doc gcc-5-multilib gcc-5-doc libgcc1-dbg build 21-Mar-2018 14:03:47 libgomp1-dbg libitm1-dbg libatomic1-dbg libasan2-dbg liblsan0-dbg build 21-Mar-2018 14:03:47 libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx0-dbg libquadmath0-dbg build 21-Mar-2018 14:03:47 glibc-doc man-browser gfortran python-nose python-numpy-dbg python-numpy-doc build 21-Mar-2018 14:03:47 The following NEW packages will be installed: build 21-Mar-2018 14:03:47 binutils cpp cpp-5 gcc gcc-5 libasan2 libatomic1 libblas-common libblas3 build 21-Mar-2018 14:03:47 libc-dev-bin libc6-dev libcc1-0 libcilkrts5 libexpat1-dev libgcc-5-dev build 21-Mar-2018 14:03:47 libgfortran3 libgmp10 libgomp1 libisl15 libitm1 liblapack3 liblsan0 libmpc3 build 21-Mar-2018 14:03:47 libmpfr4 libmpx0 libpython-dev libpython2.7 libpython2.7-dev libquadmath0 build 21-Mar-2018 14:03:47 libtsan0 libubsan0 linux-libc-dev manpages manpages-dev python-dev build 21-Mar-2018 14:03:47 python-numpy python2.7-dev build 21-Mar-2018 14:03:47 0 upgraded, 37 newly installed, 0 to remove and 9 not upgraded. build 21-Mar-2018 14:03:47 Need to get 62.4 MB of archives. build 21-Mar-2018 14:03:47 After this operation, 166 MB of additional disk space will be used. build 21-Mar-2018 14:03:47 Get:1 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgmp10 amd64 2:6.1.0+dfsg-2 [240 kB] build 21-Mar-2018 14:03:48 Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpfr4 amd64 3.1.4-1 [191 kB] build 21-Mar-2018 14:03:48 Get:3 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpc3 amd64 1.0.3-1 [39.7 kB] build 21-Mar-2018 14:03:48 Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 manpages all 4.04-2 [1087 kB] build 21-Mar-2018 14:03:48 Get:5 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 binutils amd64 2.26.1-1ubuntu1~16.04.6 [2311 kB] build 21-Mar-2018 14:03:48 Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libisl15 amd64 0.16.1-1 [524 kB] build 21-Mar-2018 14:03:48 Get:7 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 cpp-5 amd64 5.4.0-6ubuntu1~16.04.9 [7685 kB] build 21-Mar-2018 14:03:49 Get:8 http://archive.ubuntu.com/ubuntu xenial/main amd64 cpp amd64 4:5.3.1-1ubuntu1 [27.7 kB] build 21-Mar-2018 14:03:49 Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcc1-0 amd64 5.4.0-6ubuntu1~16.04.9 [38.8 kB] build 21-Mar-2018 14:03:49 Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgomp1 amd64 5.4.0-6ubuntu1~16.04.9 [55.0 kB] build 21-Mar-2018 14:03:49 Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libitm1 amd64 5.4.0-6ubuntu1~16.04.9 [27.4 kB] build 21-Mar-2018 14:03:49 Get:12 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libatomic1 amd64 5.4.0-6ubuntu1~16.04.9 [8882 B] build 21-Mar-2018 14:03:49 Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasan2 amd64 5.4.0-6ubuntu1~16.04.9 [264 kB] build 21-Mar-2018 14:03:49 Get:14 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 liblsan0 amd64 5.4.0-6ubuntu1~16.04.9 [105 kB] build 21-Mar-2018 14:03:49 Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtsan0 amd64 5.4.0-6ubuntu1~16.04.9 [244 kB] build 21-Mar-2018 14:03:49 Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libubsan0 amd64 5.4.0-6ubuntu1~16.04.9 [95.2 kB] build 21-Mar-2018 14:03:49 Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcilkrts5 amd64 5.4.0-6ubuntu1~16.04.9 [40.1 kB] build 21-Mar-2018 14:03:49 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmpx0 amd64 5.4.0-6ubuntu1~16.04.9 [9774 B] build 21-Mar-2018 14:03:49 Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libquadmath0 amd64 5.4.0-6ubuntu1~16.04.9 [131 kB] build 21-Mar-2018 14:03:49 Get:20 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgcc-5-dev amd64 5.4.0-6ubuntu1~16.04.9 [2242 kB] build 21-Mar-2018 14:03:49 Get:21 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gcc-5 amd64 5.4.0-6ubuntu1~16.04.9 [8650 kB] build 21-Mar-2018 14:03:50 Get:22 http://archive.ubuntu.com/ubuntu xenial/main amd64 gcc amd64 4:5.3.1-1ubuntu1 [5244 B] build 21-Mar-2018 14:03:50 Get:23 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas-common amd64 3.6.0-2ubuntu2 [5342 B] build 21-Mar-2018 14:03:50 Get:24 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas3 amd64 3.6.0-2ubuntu2 [147 kB] build 21-Mar-2018 14:03:50 Get:25 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc-dev-bin amd64 2.23-0ubuntu10 [68.7 kB] build 21-Mar-2018 14:03:50 Get:26 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 linux-libc-dev amd64 4.4.0-116.140 [823 kB] build 21-Mar-2018 14:03:50 Get:27 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc6-dev amd64 2.23-0ubuntu10 [2079 kB] build 21-Mar-2018 14:03:50 Get:28 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libexpat1-dev amd64 2.1.0-7ubuntu0.16.04.3 [115 kB] build 21-Mar-2018 14:03:50 Get:29 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran3 amd64 5.4.0-6ubuntu1~16.04.9 [260 kB] build 21-Mar-2018 14:03:50 Get:30 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblapack3 amd64 3.6.0-2ubuntu2 [1938 kB] build 21-Mar-2018 14:03:50 Get:31 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7 amd64 2.7.12-1ubuntu0~16.04.3 [1070 kB] build 21-Mar-2018 14:03:50 Get:32 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-dev amd64 2.7.12-1ubuntu0~16.04.3 [27.8 MB] build 21-Mar-2018 14:03:51 Get:33 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython-dev amd64 2.7.12-1~16.04 [7840 B] build 21-Mar-2018 14:03:51 Get:34 http://archive.ubuntu.com/ubuntu xenial/main amd64 manpages-dev all 4.04-2 [2048 kB] build 21-Mar-2018 14:03:51 Get:35 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7-dev amd64 2.7.12-1ubuntu0~16.04.3 [276 kB] build 21-Mar-2018 14:03:51 Get:36 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-dev amd64 2.7.12-1~16.04 [1186 B] build 21-Mar-2018 14:03:51 Get:37 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-numpy amd64 1:1.11.0-1ubuntu1 [1763 kB] build 21-Mar-2018 14:03:51 debconf: delaying package configuration, since apt-utils is not installed build 21-Mar-2018 14:03:51 Fetched 62.4 MB in 3s (15.9 MB/s) build 21-Mar-2018 14:03:52 Selecting previously unselected package libgmp10:amd64. build 21-Mar-2018 14:03:52 (Reading database ... build 21-Mar-2018 14:03:52 (Reading database ... 5% build 21-Mar-2018 14:03:52 (Reading database ... 10% build 21-Mar-2018 14:03:52 (Reading database ... 15% build 21-Mar-2018 14:03:52 (Reading database ... 20% build 21-Mar-2018 14:03:52 (Reading database ... 25% build 21-Mar-2018 14:03:52 (Reading database ... 30% build 21-Mar-2018 14:03:52 (Reading database ... 35% build 21-Mar-2018 14:03:52 (Reading database ... 40% build 21-Mar-2018 14:03:52 (Reading database ... 45% build 21-Mar-2018 14:03:52 (Reading database ... 50% build 21-Mar-2018 14:03:52 (Reading database ... 55% build 21-Mar-2018 14:03:52 (Reading database ... 60% build 21-Mar-2018 14:03:52 (Reading database ... 65% build 21-Mar-2018 14:03:52 (Reading database ... 70% build 21-Mar-2018 14:03:52 (Reading database ... 75% build 21-Mar-2018 14:03:52 (Reading database ... 80% build 21-Mar-2018 14:03:52 (Reading database ... 85% build 21-Mar-2018 14:03:52 (Reading database ... 90% build 21-Mar-2018 14:03:52 (Reading database ... 95% build 21-Mar-2018 14:03:52 (Reading database ... 100% build 21-Mar-2018 14:03:52 (Reading database ... 6075 files and directories currently installed.) build 21-Mar-2018 14:03:52 Preparing to unpack .../libgmp10_2%3a6.1.0+dfsg-2_amd64.deb ... build 21-Mar-2018 14:03:52 Unpacking libgmp10:amd64 (2:6.1.0+dfsg-2) ... build 21-Mar-2018 14:03:53 Selecting previously unselected package libmpfr4:amd64. build 21-Mar-2018 14:03:53 Preparing to unpack .../libmpfr4_3.1.4-1_amd64.deb ... build 21-Mar-2018 14:03:53 Unpacking libmpfr4:amd64 (3.1.4-1) ... build 21-Mar-2018 14:03:54 Selecting previously unselected package libmpc3:amd64. build 21-Mar-2018 14:03:54 Preparing to unpack .../libmpc3_1.0.3-1_amd64.deb ... build 21-Mar-2018 14:03:54 Unpacking libmpc3:amd64 (1.0.3-1) ... build 21-Mar-2018 14:03:54 Selecting previously unselected package manpages. build 21-Mar-2018 14:03:54 Preparing to unpack .../manpages_4.04-2_all.deb ... build 21-Mar-2018 14:03:55 Unpacking manpages (4.04-2) ... build 21-Mar-2018 14:03:55 Selecting previously unselected package binutils. build 21-Mar-2018 14:03:55 Preparing to unpack .../binutils_2.26.1-1ubuntu1~16.04.6_amd64.deb ... build 21-Mar-2018 14:03:55 Unpacking binutils (2.26.1-1ubuntu1~16.04.6) ... build 21-Mar-2018 14:03:58 Selecting previously unselected package libisl15:amd64. build 21-Mar-2018 14:03:58 Preparing to unpack .../libisl15_0.16.1-1_amd64.deb ... build 21-Mar-2018 14:03:58 Unpacking libisl15:amd64 (0.16.1-1) ... build 21-Mar-2018 14:03:59 Selecting previously unselected package cpp-5. build 21-Mar-2018 14:03:59 Preparing to unpack .../cpp-5_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 21-Mar-2018 14:03:59 Unpacking cpp-5 (5.4.0-6ubuntu1~16.04.9) ... build 21-Mar-2018 14:04:01 Selecting previously unselected package cpp. build 21-Mar-2018 14:04:01 Preparing to unpack .../cpp_4%3a5.3.1-1ubuntu1_amd64.deb ... build 21-Mar-2018 14:04:01 Unpacking cpp (4:5.3.1-1ubuntu1) ... build 21-Mar-2018 14:04:01 Selecting previously unselected package libcc1-0:amd64. build 21-Mar-2018 14:04:01 Preparing to unpack .../libcc1-0_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 21-Mar-2018 14:04:02 Unpacking libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 21-Mar-2018 14:04:02 Selecting previously unselected package libgomp1:amd64. build 21-Mar-2018 14:04:02 Preparing to unpack .../libgomp1_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 21-Mar-2018 14:04:02 Unpacking libgomp1:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 21-Mar-2018 14:04:03 Selecting previously unselected package libitm1:amd64. build 21-Mar-2018 14:04:03 Preparing to unpack .../libitm1_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 21-Mar-2018 14:04:03 Unpacking libitm1:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 21-Mar-2018 14:04:03 Selecting previously unselected package libatomic1:amd64. build 21-Mar-2018 14:04:03 Preparing to unpack .../libatomic1_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 21-Mar-2018 14:04:03 Unpacking libatomic1:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 21-Mar-2018 14:04:04 Selecting previously unselected package libasan2:amd64. build 21-Mar-2018 14:04:04 Preparing to unpack .../libasan2_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 21-Mar-2018 14:04:04 Unpacking libasan2:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 21-Mar-2018 14:04:05 Selecting previously unselected package liblsan0:amd64. build 21-Mar-2018 14:04:05 Preparing to unpack .../liblsan0_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 21-Mar-2018 14:04:05 Unpacking liblsan0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 21-Mar-2018 14:04:05 Selecting previously unselected package libtsan0:amd64. build 21-Mar-2018 14:04:05 Preparing to unpack .../libtsan0_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 21-Mar-2018 14:04:05 Unpacking libtsan0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 21-Mar-2018 14:04:07 Selecting previously unselected package libubsan0:amd64. build 21-Mar-2018 14:04:07 Preparing to unpack .../libubsan0_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 21-Mar-2018 14:04:07 Unpacking libubsan0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 21-Mar-2018 14:04:07 Selecting previously unselected package libcilkrts5:amd64. build 21-Mar-2018 14:04:07 Preparing to unpack .../libcilkrts5_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 21-Mar-2018 14:04:07 Unpacking libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 21-Mar-2018 14:04:08 Selecting previously unselected package libmpx0:amd64. build 21-Mar-2018 14:04:08 Preparing to unpack .../libmpx0_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 21-Mar-2018 14:04:08 Unpacking libmpx0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 21-Mar-2018 14:04:09 Selecting previously unselected package libquadmath0:amd64. build 21-Mar-2018 14:04:09 Preparing to unpack .../libquadmath0_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 21-Mar-2018 14:04:09 Unpacking libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 21-Mar-2018 14:04:09 Selecting previously unselected package libgcc-5-dev:amd64. build 21-Mar-2018 14:04:09 Preparing to unpack .../libgcc-5-dev_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 21-Mar-2018 14:04:09 Unpacking libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 21-Mar-2018 14:04:10 Selecting previously unselected package gcc-5. build 21-Mar-2018 14:04:10 Preparing to unpack .../gcc-5_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 21-Mar-2018 14:04:10 Unpacking gcc-5 (5.4.0-6ubuntu1~16.04.9) ... build 21-Mar-2018 14:04:12 Selecting previously unselected package gcc. build 21-Mar-2018 14:04:12 Preparing to unpack .../gcc_4%3a5.3.1-1ubuntu1_amd64.deb ... build 21-Mar-2018 14:04:12 Unpacking gcc (4:5.3.1-1ubuntu1) ... build 21-Mar-2018 14:04:12 Selecting previously unselected package libblas-common. build 21-Mar-2018 14:04:12 Preparing to unpack .../libblas-common_3.6.0-2ubuntu2_amd64.deb ... build 21-Mar-2018 14:04:12 Unpacking libblas-common (3.6.0-2ubuntu2) ... build 21-Mar-2018 14:04:14 Selecting previously unselected package libblas3. build 21-Mar-2018 14:04:14 Preparing to unpack .../libblas3_3.6.0-2ubuntu2_amd64.deb ... build 21-Mar-2018 14:04:14 Unpacking libblas3 (3.6.0-2ubuntu2) ... build 21-Mar-2018 14:04:14 Selecting previously unselected package libc-dev-bin. build 21-Mar-2018 14:04:14 Preparing to unpack .../libc-dev-bin_2.23-0ubuntu10_amd64.deb ... build 21-Mar-2018 14:04:15 Unpacking libc-dev-bin (2.23-0ubuntu10) ... build 21-Mar-2018 14:04:15 Selecting previously unselected package linux-libc-dev:amd64. build 21-Mar-2018 14:04:15 Preparing to unpack .../linux-libc-dev_4.4.0-116.140_amd64.deb ... build 21-Mar-2018 14:04:15 Unpacking linux-libc-dev:amd64 (4.4.0-116.140) ... build 21-Mar-2018 14:04:16 Selecting previously unselected package libc6-dev:amd64. build 21-Mar-2018 14:04:16 Preparing to unpack .../libc6-dev_2.23-0ubuntu10_amd64.deb ... build 21-Mar-2018 14:04:16 Unpacking libc6-dev:amd64 (2.23-0ubuntu10) ... build 21-Mar-2018 14:04:18 Selecting previously unselected package libexpat1-dev:amd64. build 21-Mar-2018 14:04:18 Preparing to unpack .../libexpat1-dev_2.1.0-7ubuntu0.16.04.3_amd64.deb ... build 21-Mar-2018 14:04:18 Unpacking libexpat1-dev:amd64 (2.1.0-7ubuntu0.16.04.3) ... build 21-Mar-2018 14:04:18 Selecting previously unselected package libgfortran3:amd64. build 21-Mar-2018 14:04:18 Preparing to unpack .../libgfortran3_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 21-Mar-2018 14:04:18 Unpacking libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 21-Mar-2018 14:04:19 Selecting previously unselected package liblapack3. build 21-Mar-2018 14:04:19 Preparing to unpack .../liblapack3_3.6.0-2ubuntu2_amd64.deb ... build 21-Mar-2018 14:04:19 Unpacking liblapack3 (3.6.0-2ubuntu2) ... build 21-Mar-2018 14:04:20 Selecting previously unselected package libpython2.7:amd64. build 21-Mar-2018 14:04:20 Preparing to unpack .../libpython2.7_2.7.12-1ubuntu0~16.04.3_amd64.deb ... build 21-Mar-2018 14:04:20 Unpacking libpython2.7:amd64 (2.7.12-1ubuntu0~16.04.3) ... build 21-Mar-2018 14:04:21 Selecting previously unselected package libpython2.7-dev:amd64. build 21-Mar-2018 14:04:21 Preparing to unpack .../libpython2.7-dev_2.7.12-1ubuntu0~16.04.3_amd64.deb ... build 21-Mar-2018 14:04:22 Unpacking libpython2.7-dev:amd64 (2.7.12-1ubuntu0~16.04.3) ... build 21-Mar-2018 14:04:24 Selecting previously unselected package libpython-dev:amd64. build 21-Mar-2018 14:04:24 Preparing to unpack .../libpython-dev_2.7.12-1~16.04_amd64.deb ... build 21-Mar-2018 14:04:24 Unpacking libpython-dev:amd64 (2.7.12-1~16.04) ... build 21-Mar-2018 14:04:25 Selecting previously unselected package manpages-dev. build 21-Mar-2018 14:04:25 Preparing to unpack .../manpages-dev_4.04-2_all.deb ... build 21-Mar-2018 14:04:25 Unpacking manpages-dev (4.04-2) ... build 21-Mar-2018 14:04:26 Selecting previously unselected package python2.7-dev. build 21-Mar-2018 14:04:26 Preparing to unpack .../python2.7-dev_2.7.12-1ubuntu0~16.04.3_amd64.deb ... build 21-Mar-2018 14:04:26 Unpacking python2.7-dev (2.7.12-1ubuntu0~16.04.3) ... build 21-Mar-2018 14:04:26 Selecting previously unselected package python-dev. build 21-Mar-2018 14:04:26 Preparing to unpack .../python-dev_2.7.12-1~16.04_amd64.deb ... build 21-Mar-2018 14:04:26 Unpacking python-dev (2.7.12-1~16.04) ... build 21-Mar-2018 14:04:28 Selecting previously unselected package python-numpy. build 21-Mar-2018 14:04:28 Preparing to unpack .../python-numpy_1%3a1.11.0-1ubuntu1_amd64.deb ... build 21-Mar-2018 14:04:28 Unpacking python-numpy (1:1.11.0-1ubuntu1) ... build 21-Mar-2018 14:04:28 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 21-Mar-2018 14:04:29 Setting up libgmp10:amd64 (2:6.1.0+dfsg-2) ... build 21-Mar-2018 14:04:29 Setting up libmpfr4:amd64 (3.1.4-1) ... build 21-Mar-2018 14:04:29 Setting up libmpc3:amd64 (1.0.3-1) ... build 21-Mar-2018 14:04:30 Setting up manpages (4.04-2) ... build 21-Mar-2018 14:04:30 Setting up binutils (2.26.1-1ubuntu1~16.04.6) ... build 21-Mar-2018 14:04:30 Setting up libisl15:amd64 (0.16.1-1) ... build 21-Mar-2018 14:04:31 Setting up cpp-5 (5.4.0-6ubuntu1~16.04.9) ... build 21-Mar-2018 14:04:32 Setting up cpp (4:5.3.1-1ubuntu1) ... build 21-Mar-2018 14:04:32 Setting up libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 21-Mar-2018 14:04:32 Setting up libgomp1:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 21-Mar-2018 14:04:33 Setting up libitm1:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 21-Mar-2018 14:04:33 Setting up libatomic1:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 21-Mar-2018 14:04:33 Setting up libasan2:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 21-Mar-2018 14:04:34 Setting up liblsan0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 21-Mar-2018 14:04:34 Setting up libtsan0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 21-Mar-2018 14:04:34 Setting up libubsan0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 21-Mar-2018 14:04:34 Setting up libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 21-Mar-2018 14:04:35 Setting up libmpx0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 21-Mar-2018 14:04:35 Setting up libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 21-Mar-2018 14:04:35 Setting up libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 21-Mar-2018 14:04:35 Setting up gcc-5 (5.4.0-6ubuntu1~16.04.9) ... build 21-Mar-2018 14:04:36 Setting up gcc (4:5.3.1-1ubuntu1) ... build 21-Mar-2018 14:04:36 Setting up libblas-common (3.6.0-2ubuntu2) ... build 21-Mar-2018 14:04:36 Setting up libblas3 (3.6.0-2ubuntu2) ... build 21-Mar-2018 14:04:37 update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode build 21-Mar-2018 14:04:37 Setting up libc-dev-bin (2.23-0ubuntu10) ... build 21-Mar-2018 14:04:37 Setting up linux-libc-dev:amd64 (4.4.0-116.140) ... build 21-Mar-2018 14:04:38 Setting up libc6-dev:amd64 (2.23-0ubuntu10) ... build 21-Mar-2018 14:04:38 Setting up libexpat1-dev:amd64 (2.1.0-7ubuntu0.16.04.3) ... build 21-Mar-2018 14:04:38 Setting up libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 21-Mar-2018 14:04:38 Setting up liblapack3 (3.6.0-2ubuntu2) ... build 21-Mar-2018 14:04:39 update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode build 21-Mar-2018 14:04:39 Setting up libpython2.7:amd64 (2.7.12-1ubuntu0~16.04.3) ... build 21-Mar-2018 14:04:39 Setting up libpython2.7-dev:amd64 (2.7.12-1ubuntu0~16.04.3) ... build 21-Mar-2018 14:04:39 Setting up libpython-dev:amd64 (2.7.12-1~16.04) ... build 21-Mar-2018 14:04:39 Setting up manpages-dev (4.04-2) ... build 21-Mar-2018 14:04:40 Setting up python2.7-dev (2.7.12-1ubuntu0~16.04.3) ... build 21-Mar-2018 14:04:41 Setting up python-dev (2.7.12-1~16.04) ... build 21-Mar-2018 14:04:41 Setting up python-numpy (1:1.11.0-1ubuntu1) ... build 21-Mar-2018 14:04:43 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 21-Mar-2018 14:04:44 Collecting Flask==0.10.1 (from -r /home/clowder/requirements.txt (line 1)) build 21-Mar-2018 14:04:44 Downloading Flask-0.10.1.tar.gz (544kB) build 21-Mar-2018 14:04:45 Collecting html5lib==0.99999 (from -r /home/clowder/requirements.txt (line 2)) build 21-Mar-2018 14:04:45 Downloading html5lib-0.99999.tar.gz (887kB) build 21-Mar-2018 14:04:45 Collecting isodate==0.5.1 (from -r /home/clowder/requirements.txt (line 3)) build 21-Mar-2018 14:04:45 Downloading isodate-0.5.1.tar.gz build 21-Mar-2018 14:04:45 Collecting itsdangerous==0.24 (from -r /home/clowder/requirements.txt (line 4)) build 21-Mar-2018 14:04:45 Downloading itsdangerous-0.24.tar.gz (46kB) build 21-Mar-2018 14:04:46 Collecting Jinja2==2.7.3 (from -r /home/clowder/requirements.txt (line 5)) build 21-Mar-2018 14:04:46 Downloading Jinja2-2.7.3.tar.gz (378kB) build 21-Mar-2018 14:04:46 Collecting MarkupSafe==0.23 (from -r /home/clowder/requirements.txt (line 6)) build 21-Mar-2018 14:04:46 Downloading MarkupSafe-0.23.tar.gz build 21-Mar-2018 14:04:46 Collecting nltk==3.0.3 (from -r /home/clowder/requirements.txt (line 7)) build 21-Mar-2018 14:04:46 Downloading nltk-3.0.3.zip (1.2MB) build 21-Mar-2018 14:04:47 Requirement already satisfied (use --upgrade to upgrade): pika==0.10.0 in /usr/local/lib/python2.7/dist-packages (from -r /home/clowder/requirements.txt (line 9)) build 21-Mar-2018 14:04:47 Collecting pyparsing==2.0.3 (from -r /home/clowder/requirements.txt (line 11)) build 21-Mar-2018 14:04:47 Downloading pyparsing-2.0.3-py2.py3-none-any.whl build 21-Mar-2018 14:04:47 Collecting rdflib==4.2.0 (from -r /home/clowder/requirements.txt (line 12)) build 21-Mar-2018 14:04:47 Downloading rdflib-4.2.0.tar.gz (881kB) build 21-Mar-2018 14:04:48 Collecting requests==2.7.0 (from -r /home/clowder/requirements.txt (line 13)) build 21-Mar-2018 14:04:48 Downloading requests-2.7.0-py2.py3-none-any.whl (470kB) build 21-Mar-2018 14:04:48 Collecting six==1.9.0 (from -r /home/clowder/requirements.txt (line 14)) build 21-Mar-2018 14:04:48 Downloading six-1.9.0-py2.py3-none-any.whl build 21-Mar-2018 14:04:48 Collecting SPARQLWrapper==1.6.4 (from -r /home/clowder/requirements.txt (line 15)) build 21-Mar-2018 14:04:48 Downloading SPARQLWrapper-1.6.4.zip build 21-Mar-2018 14:04:49 Collecting Werkzeug==0.10.4 (from -r /home/clowder/requirements.txt (line 16)) build 21-Mar-2018 14:04:49 Downloading Werkzeug-0.10.4-py2.py3-none-any.whl (293kB) build 21-Mar-2018 14:04:49 Requirement already satisfied (use --upgrade to upgrade): wheel==0.24.0 in /usr/local/lib/python2.7/dist-packages (from -r /home/clowder/requirements.txt (line 17)) build 21-Mar-2018 14:04:49 Building wheels for collected packages: Flask, html5lib, isodate, itsdangerous, Jinja2, MarkupSafe, nltk, rdflib, SPARQLWrapper build 21-Mar-2018 14:04:49 Running setup.py bdist_wheel for Flask: started build 21-Mar-2018 14:04:49 Running setup.py bdist_wheel for Flask: finished with status 'done' build 21-Mar-2018 14:04:49 Stored in directory: /root/.cache/pip/wheels/b6/09/65/5fcf16f74f334a215447c26769e291c41883862fe0dc7c1430 build 21-Mar-2018 14:04:49 Running setup.py bdist_wheel for html5lib: started build 21-Mar-2018 14:04:49 Running setup.py bdist_wheel for html5lib: finished with status 'done' build 21-Mar-2018 14:04:49 Stored in directory: /root/.cache/pip/wheels/2e/c5/b7/8d03c5466479481371de951021d29c0aaa4995cd17cc25aa6a build 21-Mar-2018 14:04:49 Running setup.py bdist_wheel for isodate: started build 21-Mar-2018 14:04:50 Running setup.py bdist_wheel for isodate: finished with status 'done' build 21-Mar-2018 14:04:50 Stored in directory: /root/.cache/pip/wheels/52/11/96/423cd418a0207a9d5029e9b871d78d3715c2de8d8a8adf31a8 build 21-Mar-2018 14:04:50 Running setup.py bdist_wheel for itsdangerous: started build 21-Mar-2018 14:04:50 Running setup.py bdist_wheel for itsdangerous: finished with status 'done' build 21-Mar-2018 14:04:50 Stored in directory: /root/.cache/pip/wheels/fc/a8/66/24d655233c757e178d45dea2de22a04c6d92766abfb741129a build 21-Mar-2018 14:04:50 Running setup.py bdist_wheel for Jinja2: started build 21-Mar-2018 14:04:50 Running setup.py bdist_wheel for Jinja2: finished with status 'done' build 21-Mar-2018 14:04:50 Stored in directory: /root/.cache/pip/wheels/ea/d6/b1/389cd2f50d24ce359eb1f4005965da619ef62316226b2d430d build 21-Mar-2018 14:04:50 Running setup.py bdist_wheel for MarkupSafe: started build 21-Mar-2018 14:04:50 Running setup.py bdist_wheel for MarkupSafe: finished with status 'done' build 21-Mar-2018 14:04:50 Stored in directory: /root/.cache/pip/wheels/a3/fa/dc/0198eed9ad95489b8a4f45d14dd5d2aee3f8984e46862c5748 build 21-Mar-2018 14:04:50 Running setup.py bdist_wheel for nltk: started build 21-Mar-2018 14:04:51 Running setup.py bdist_wheel for nltk: finished with status 'done' build 21-Mar-2018 14:04:51 Stored in directory: /root/.cache/pip/wheels/cd/bf/8d/c1eb3754a35c7893308f47223d1509a9fcb18b81ff1b74c76e build 21-Mar-2018 14:04:51 Running setup.py bdist_wheel for rdflib: started build 21-Mar-2018 14:04:52 Running setup.py bdist_wheel for rdflib: finished with status 'done' build 21-Mar-2018 14:04:52 Stored in directory: /root/.cache/pip/wheels/27/b3/d3/9477b1556097d3a0f255e3d983448a90453f9f36d8ed4288f1 build 21-Mar-2018 14:04:52 Running setup.py bdist_wheel for SPARQLWrapper: started build 21-Mar-2018 14:04:52 Running setup.py bdist_wheel for SPARQLWrapper: finished with status 'done' build 21-Mar-2018 14:04:52 Stored in directory: /root/.cache/pip/wheels/71/f9/14/191020904a54206270cbb74420ef864368d27970b71c52d4d8 build 21-Mar-2018 14:04:52 Successfully built Flask html5lib isodate itsdangerous Jinja2 MarkupSafe nltk rdflib SPARQLWrapper build 21-Mar-2018 14:04:52 Installing collected packages: Werkzeug, MarkupSafe, Jinja2, itsdangerous, Flask, six, html5lib, isodate, nltk, pyparsing, SPARQLWrapper, rdflib, requests build 21-Mar-2018 14:04:53 Found existing installation: requests 2.10.0 build 21-Mar-2018 14:04:53 Uninstalling requests-2.10.0: build 21-Mar-2018 14:05:02 Successfully uninstalled requests-2.10.0 build 21-Mar-2018 14:05:02 Successfully installed Flask-0.10.1 Jinja2-2.7.3 MarkupSafe-0.23 SPARQLWrapper-1.6.4 Werkzeug-0.10.4 html5lib-0.99999 isodate-0.5.1 itsdangerous-0.24 nltk-3.0.3 pyparsing-2.0.3 rdflib-4.2.0 requests-2.7.0 six-1.9.0 build 21-Mar-2018 14:05:02 You are using pip version 8.1.1, however version 9.0.2 is available. build 21-Mar-2018 14:05:02 You should consider upgrading via the 'pip install --upgrade pip' command. build 21-Mar-2018 14:05:06  ---> d75ac0ceaa24 build 21-Mar-2018 14:05:07 Removing intermediate container a047587fca7e build 21-Mar-2018 14:05:07 Step 6/13 : USER clowder build 21-Mar-2018 14:05:07 ---> Running in c009f73516ba build 21-Mar-2018 14:05:08 ---> 88c9b3a80a07 build 21-Mar-2018 14:05:08 Removing intermediate container c009f73516ba build 21-Mar-2018 14:05:08 Step 7/13 : COPY namedentityrecognition.py /home/clowder/ build 21-Mar-2018 14:05:08 ---> 439722f2b604 build 21-Mar-2018 14:05:09 Removing intermediate container 1ad9691935d5 build 21-Mar-2018 14:05:09 Step 8/13 : RUN /home/clowder/namedentityrecognition.py build 21-Mar-2018 14:05:09 ---> Running in 1daafd54cef3 build 21-Mar-2018 14:05:11 [nltk_data] Downloading package punkt to /home/clowder/nltk_data... build 21-Mar-2018 14:05:11 [nltk_data] Unzipping tokenizers/punkt.zip. build 21-Mar-2018 14:05:11 [nltk_data] Downloading package maxent_treebank_pos_tagger to build 21-Mar-2018 14:05:11 [nltk_data] /home/clowder/nltk_data... build 21-Mar-2018 14:05:11 [nltk_data] Unzipping taggers/maxent_treebank_pos_tagger.zip. build 21-Mar-2018 14:05:11 [] build 21-Mar-2018 14:05:11 [] build 21-Mar-2018 14:05:13 ---> 93333b80516f build 21-Mar-2018 14:05:14 Removing intermediate container 1daafd54cef3 build 21-Mar-2018 14:05:14 Step 9/13 : ENV RABBITMQ_URI "" RABBITMQ_EXCHANGE "clowder" RABBITMQ_VHOST "%2F" RABBITMQ_QUEUE "ncsa.dbpedia" MAIN_SCRIPT "extractor.py" build 21-Mar-2018 14:05:14 ---> Running in 82401337394f build 21-Mar-2018 14:05:15 ---> 1da6bfbdcf8e build 21-Mar-2018 14:05:15 Removing intermediate container 82401337394f build 21-Mar-2018 14:05:15 Step 10/13 : USER clowder build 21-Mar-2018 14:05:16 ---> Running in db35265a4ef0 build 21-Mar-2018 14:05:16 ---> edf9006d3338 build 21-Mar-2018 14:05:16 Removing intermediate container db35265a4ef0 build 21-Mar-2018 14:05:16 Step 11/13 : COPY entrypoint.sh *.py *.json /home/clowder/ build 21-Mar-2018 14:05:17 ---> a230226b0cad build 21-Mar-2018 14:05:18 Removing intermediate container 5e732c948ca4 build 21-Mar-2018 14:05:18 Step 12/13 : ENTRYPOINT /home/clowder/entrypoint.sh build 21-Mar-2018 14:05:18 ---> Running in 92d0519dc598 build 21-Mar-2018 14:05:18 ---> a4e423867548 build 21-Mar-2018 14:05:18 Removing intermediate container 92d0519dc598 build 21-Mar-2018 14:05:18 Step 13/13 : CMD extractor build 21-Mar-2018 14:05:18 ---> Running in 20c384e3b4cf build 21-Mar-2018 14:05:19 ---> 05736a8b271d build 21-Mar-2018 14:05:19 Removing intermediate container 20c384e3b4cf build 21-Mar-2018 14:05:19 Successfully built 05736a8b271d build 21-Mar-2018 14:05:19 The push refers to a repository [docker.io/clowder/extractors-dbpedia] build 21-Mar-2018 14:05:19 0b4e1132be0a: Preparing build 21-Mar-2018 14:05:19 1062627d5a57: Preparing build 21-Mar-2018 14:05:19 e7203bee927a: Preparing build 21-Mar-2018 14:05:19 e985c56663d3: Preparing build 21-Mar-2018 14:05:19 d5a5f15fff8f: Preparing build 21-Mar-2018 14:05:19 c516b4a40162: Preparing build 21-Mar-2018 14:05:19 b98bd56af95b: Preparing build 21-Mar-2018 14:05:19 970ed72532fc: Preparing build 21-Mar-2018 14:05:19 87d01d9fa347: Preparing build 21-Mar-2018 14:05:19 db584c622b50: Preparing build 21-Mar-2018 14:05:19 52a7ea2bb533: Preparing build 21-Mar-2018 14:05:19 52f389ea437e: Preparing build 21-Mar-2018 14:05:19 88888b9b1b5b: Preparing build 21-Mar-2018 14:05:19 a94e0d5a7c40: Preparing build 21-Mar-2018 14:05:19 b98bd56af95b: Waiting build 21-Mar-2018 14:05:19 c516b4a40162: Waiting build 21-Mar-2018 14:05:19 970ed72532fc: Waiting build 21-Mar-2018 14:05:19 87d01d9fa347: Waiting build 21-Mar-2018 14:05:19 db584c622b50: Waiting build 21-Mar-2018 14:05:19 88888b9b1b5b: Waiting build 21-Mar-2018 14:05:19 a94e0d5a7c40: Waiting build 21-Mar-2018 14:05:21 d5a5f15fff8f: Pushed build 21-Mar-2018 14:05:21 0b4e1132be0a: Pushed build 21-Mar-2018 14:05:21 e7203bee927a: Pushed build 21-Mar-2018 14:05:21 c516b4a40162: Mounted from clowder/extractors-vlfeat build 21-Mar-2018 14:05:21 b98bd56af95b: Mounted from clowder/extractors-vlfeat build 21-Mar-2018 14:05:21 970ed72532fc: Mounted from clowder/extractors-vlfeat build 21-Mar-2018 14:05:22 87d01d9fa347: Mounted from clowder/extractors-vlfeat build 21-Mar-2018 14:05:22 db584c622b50: Mounted from clowder/extractors-vlfeat build 21-Mar-2018 14:05:22 52a7ea2bb533: Mounted from clowder/extractors-vlfeat build 21-Mar-2018 14:05:22 52f389ea437e: Mounted from clowder/extractors-vlfeat build 21-Mar-2018 14:05:23 a94e0d5a7c40: Mounted from clowder/extractors-vlfeat build 21-Mar-2018 14:05:23 88888b9b1b5b: Mounted from clowder/extractors-vlfeat build 21-Mar-2018 14:05:31 1062627d5a57: Pushed build 21-Mar-2018 14:05:39 e985c56663d3: Pushed build 21-Mar-2018 14:05:41 browndog_v0.2.0: digest: sha256:949ec9c774a8db4cda2828046b3947da24ca4d5027b52123279c50b1d6fca4e1 size: 3243 build 21-Mar-2018 14:05:41 The push refers to a repository [docker.io/clowder/extractors-dbpedia] build 21-Mar-2018 14:05:41 0b4e1132be0a: Preparing build 21-Mar-2018 14:05:41 1062627d5a57: Preparing build 21-Mar-2018 14:05:41 e7203bee927a: Preparing build 21-Mar-2018 14:05:41 e985c56663d3: Preparing build 21-Mar-2018 14:05:41 d5a5f15fff8f: Preparing build 21-Mar-2018 14:05:41 c516b4a40162: Preparing build 21-Mar-2018 14:05:41 b98bd56af95b: Preparing build 21-Mar-2018 14:05:41 970ed72532fc: Preparing build 21-Mar-2018 14:05:41 87d01d9fa347: Preparing build 21-Mar-2018 14:05:41 db584c622b50: Preparing build 21-Mar-2018 14:05:41 52a7ea2bb533: Preparing build 21-Mar-2018 14:05:41 52f389ea437e: Preparing build 21-Mar-2018 14:05:41 88888b9b1b5b: Preparing build 21-Mar-2018 14:05:41 b98bd56af95b: Waiting build 21-Mar-2018 14:05:41 970ed72532fc: Waiting build 21-Mar-2018 14:05:41 87d01d9fa347: Waiting build 21-Mar-2018 14:05:41 db584c622b50: Waiting build 21-Mar-2018 14:05:41 52a7ea2bb533: Waiting build 21-Mar-2018 14:05:41 52f389ea437e: Waiting build 21-Mar-2018 14:05:41 a94e0d5a7c40: Preparing build 21-Mar-2018 14:05:41 88888b9b1b5b: Waiting build 21-Mar-2018 14:05:41 a94e0d5a7c40: Waiting build 21-Mar-2018 14:05:41 e985c56663d3: Layer already exists build 21-Mar-2018 14:05:41 e7203bee927a: Layer already exists build 21-Mar-2018 14:05:41 1062627d5a57: Layer already exists build 21-Mar-2018 14:05:41 d5a5f15fff8f: Layer already exists build 21-Mar-2018 14:05:41 0b4e1132be0a: Layer already exists build 21-Mar-2018 14:05:42 970ed72532fc: Layer already exists build 21-Mar-2018 14:05:42 c516b4a40162: Layer already exists build 21-Mar-2018 14:05:42 b98bd56af95b: Layer already exists build 21-Mar-2018 14:05:42 db584c622b50: Layer already exists build 21-Mar-2018 14:05:42 87d01d9fa347: Layer already exists build 21-Mar-2018 14:05:42 52a7ea2bb533: Layer already exists build 21-Mar-2018 14:05:42 52f389ea437e: Layer already exists build 21-Mar-2018 14:05:42 88888b9b1b5b: Layer already exists build 21-Mar-2018 14:05:42 a94e0d5a7c40: Layer already exists build 21-Mar-2018 14:05:42 browndog_v0.3.0: digest: sha256:949ec9c774a8db4cda2828046b3947da24ca4d5027b52123279c50b1d6fca4e1 size: 3243 build 21-Mar-2018 14:05:42 The push refers to a repository [docker.io/clowder/extractors-dbpedia] build 21-Mar-2018 14:05:42 0b4e1132be0a: Preparing build 21-Mar-2018 14:05:42 1062627d5a57: Preparing build 21-Mar-2018 14:05:42 e7203bee927a: Preparing build 21-Mar-2018 14:05:42 e985c56663d3: Preparing build 21-Mar-2018 14:05:42 d5a5f15fff8f: Preparing build 21-Mar-2018 14:05:42 c516b4a40162: Preparing build 21-Mar-2018 14:05:42 b98bd56af95b: Preparing build 21-Mar-2018 14:05:42 970ed72532fc: Preparing build 21-Mar-2018 14:05:42 87d01d9fa347: Preparing build 21-Mar-2018 14:05:42 db584c622b50: Preparing build 21-Mar-2018 14:05:42 c516b4a40162: Waiting build 21-Mar-2018 14:05:42 b98bd56af95b: Waiting build 21-Mar-2018 14:05:42 970ed72532fc: Waiting build 21-Mar-2018 14:05:42 87d01d9fa347: Waiting build 21-Mar-2018 14:05:42 52a7ea2bb533: Preparing build 21-Mar-2018 14:05:42 52f389ea437e: Preparing build 21-Mar-2018 14:05:42 88888b9b1b5b: Preparing build 21-Mar-2018 14:05:42 a94e0d5a7c40: Preparing build 21-Mar-2018 14:05:42 db584c622b50: Waiting build 21-Mar-2018 14:05:42 52f389ea437e: Waiting build 21-Mar-2018 14:05:42 88888b9b1b5b: Waiting build 21-Mar-2018 14:05:42 a94e0d5a7c40: Waiting build 21-Mar-2018 14:05:42 52a7ea2bb533: Waiting build 21-Mar-2018 14:05:43 e985c56663d3: Layer already exists build 21-Mar-2018 14:05:43 1062627d5a57: Layer already exists build 21-Mar-2018 14:05:43 d5a5f15fff8f: Layer already exists build 21-Mar-2018 14:05:43 0b4e1132be0a: Layer already exists build 21-Mar-2018 14:05:43 e7203bee927a: Layer already exists build 21-Mar-2018 14:05:43 b98bd56af95b: Layer already exists build 21-Mar-2018 14:05:43 970ed72532fc: Layer already exists build 21-Mar-2018 14:05:43 87d01d9fa347: Layer already exists build 21-Mar-2018 14:05:43 c516b4a40162: Layer already exists build 21-Mar-2018 14:05:43 db584c622b50: Layer already exists build 21-Mar-2018 14:05:43 52a7ea2bb533: Layer already exists build 21-Mar-2018 14:05:43 88888b9b1b5b: Layer already exists build 21-Mar-2018 14:05:43 52f389ea437e: Layer already exists build 21-Mar-2018 14:05:43 a94e0d5a7c40: Layer already exists build 21-Mar-2018 14:05:44 latest: digest: sha256:949ec9c774a8db4cda2828046b3947da24ca4d5027b52123279c50b1d6fca4e1 size: 3243 build 21-Mar-2018 14:05:44 Untagged: 31879:latest simple 21-Mar-2018 14:05:44 Finished task 'docker build' with result: Success simple 21-Mar-2018 14:05:44 Running post build plugin 'Docker Container Cleanup' simple 21-Mar-2018 14:05:44 Running post build plugin 'NCover Results Collector' simple 21-Mar-2018 14:05:44 Running post build plugin 'Clover Results Collector' simple 21-Mar-2018 14:05:44 Running post build plugin 'npm Cache Cleanup' simple 21-Mar-2018 14:05:44 Running post build plugin 'Artifact Copier' simple 21-Mar-2018 14:05:44 Finalising the build... simple 21-Mar-2018 14:05:44 Stopping timer. simple 21-Mar-2018 14:05:44 Build CATS-EXDBP-JOB1-31 completed. simple 21-Mar-2018 14:05:44 Running on server: post build plugin 'NCover Results Collector' simple 21-Mar-2018 14:05:44 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 21-Mar-2018 14:05:44 Running on server: post build plugin 'Clover Delta Calculator' simple 21-Mar-2018 14:05:44 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 21-Mar-2018 14:05:44 All post build plugins have finished simple 21-Mar-2018 14:05:44 Generating build results summary... simple 21-Mar-2018 14:05:44 Saving build results to disk... simple 21-Mar-2018 14:05:44 Logging substituted variables... simple 21-Mar-2018 14:05:44 Indexing build results... simple 21-Mar-2018 14:05:44 Finished building CATS-EXDBP-JOB1-31.