simple 23-Mar-2018 12:13:43 Build Clowder - extractors-dbpedia - Default Job #32 (CATS-EXDBP-JOB1-32) started building on agent buildserver-3.os.ncsa.edu simple 23-Mar-2018 12:13:43 Remote agent on host buildserver-3.os.ncsa.edu simple 23-Mar-2018 12:13:43 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1 simple 23-Mar-2018 12:13:43 Executing build Clowder - extractors-dbpedia - Default Job #32 (CATS-EXDBP-JOB1-32) simple 23-Mar-2018 12:13:43 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 23-Mar-2018 12:13:43 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1 simple 23-Mar-2018 12:13:43 Updating source code to revision: 41c21decd56c8a967bf1fdb5d4d284f6b3b0de41 simple 23-Mar-2018 12:13:43 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1/.git'. simple 23-Mar-2018 12:13:43 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1/.git/ simple 23-Mar-2018 12:13:44 Fetching 'refs/heads/master' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-dbpedia.git'. Will try to do a shallow fetch. simple 23-Mar-2018 12:13:44 Warning: Permanently added '[127.0.0.1]:40855' (RSA) to the list of known hosts. simple 23-Mar-2018 12:13:44 From ssh://127.0.0.1:40855/cats/extractors-dbpedia simple 23-Mar-2018 12:13:44 * [new branch] master -> master simple 23-Mar-2018 12:13:44 * [new tag] browndog_v0.2.0 -> browndog_v0.2.0 simple 23-Mar-2018 12:13:44 * [new tag] browndog_v0.3.0 -> browndog_v0.3.0 simple 23-Mar-2018 12:13:44 Checking out revision 41c21decd56c8a967bf1fdb5d4d284f6b3b0de41. simple 23-Mar-2018 12:13:44 Already on 'master' simple 23-Mar-2018 12:13:44 Updated source code to revision: 41c21decd56c8a967bf1fdb5d4d284f6b3b0de41 simple 23-Mar-2018 12:13:44 Finished task 'Checkout Default Repository' with result: Success simple 23-Mar-2018 12:13:44 Running pre-build action: VCS Version Collector simple 23-Mar-2018 12:13:44 Starting task 'docker build' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 23-Mar-2018 12:13:44 Beginning to execute external process for build 'Clowder - extractors-dbpedia - Default Job #32 (CATS-EXDBP-JOB1-32)'\n ... running command line: \n/bin/sh docker.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=master\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_dependency_parent_0=CATS-PYC2-68\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_dependency_parent_total=1\nbamboo_planRepository_1_branchDisplayName=master\nbamboo_repository_revision_number=41c21decd56c8a967bf1fdb5d4d284f6b3b0de41\nbamboo_repository_120946696_revision_number=41c21decd56c8a967bf1fdb5d4d284f6b3b0de41\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-EXDBP-JOB1-32\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1\nbamboo_planRepository_1_name=extractors-dbpedia\nbamboo_buildKey=CATS-EXDBP-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=extractors-dbpedia\nbamboo_planRepository_name=extractors-dbpedia\nbamboo_buildNumber=32\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-EXDBP-JOB1-32\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-dbpedia.git\nbamboo_agentId=143032321\nbamboo_planName=Clowder - extractors-dbpedia\nbamboo_shortPlanKey=EXDBP\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_shortJobKey=JOB1\nbamboo_planRepository_revision=41c21decd56c8a967bf1fdb5d4d284f6b3b0de41\nbamboo_buildTimeStamp=2018-03-23T11:49:09.954-05:00\nbamboo_repository_previous_revision_number=41c21decd56c8a967bf1fdb5d4d284f6b3b0de41\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_planRepository_previousRevision=41c21decd56c8a967bf1fdb5d4d284f6b3b0de41\nbamboo_repository_git_branch=master\nbamboo_buildResultKey=CATS-EXDBP-JOB1-32\nbamboo_repository_branch_name=master\nbamboo_buildPlanName=Clowder - extractors-dbpedia - Default Job\nbamboo_planRepository_1_revision=41c21decd56c8a967bf1fdb5d4d284f6b3b0de41\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=extractors-dbpedia\nbamboo_repository_120946696_previous_revision_number=41c21decd56c8a967bf1fdb5d4d284f6b3b0de41\nbamboo_repository_120946696_branch_name=master\nbamboo_buildFailed=false\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_repository_120946696_git_username=\nbamboo_planRepository_branch=master\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_repository_120946696_git_branch=master\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=41c21decd56c8a967bf1fdb5d4d284f6b3b0de41\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_planRepository_branchDisplayName=master\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=master\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_repository_120946696_name=extractors-dbpedia\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-120750095\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-dbpedia.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1\nbamboo_planKey=CATS-EXDBP\nbamboo_repository_120946696_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-dbpedia.git\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-dbpedia.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_1_branchName=master\n build 23-Mar-2018 12:13:44 Sending build context to Docker daemon 163.3 kB build 23-Mar-2018 12:13:44 build 23-Mar-2018 12:13:44 Step 1/13 : FROM clowder/pyclowder:2 build 23-Mar-2018 12:13:45 2: Pulling from clowder/pyclowder build 23-Mar-2018 12:13:45 Digest: sha256:ff985396af0b6842e6389353c2708864130c3a7a3b662a0c74f1a2e068884445 build 23-Mar-2018 12:13:45 Status: Image is up to date for clowder/pyclowder:2 build 23-Mar-2018 12:13:45 ---> 9e0449e8b2fc build 23-Mar-2018 12:13:45 Step 2/13 : MAINTAINER Luigi Marigni build 23-Mar-2018 12:13:45 ---> Running in 153ddc079406 build 23-Mar-2018 12:13:46 ---> 92c0240f816c build 23-Mar-2018 12:13:46 Removing intermediate container 153ddc079406 build 23-Mar-2018 12:13:46 Step 3/13 : COPY requirements.txt /home/clowder/ build 23-Mar-2018 12:13:46 ---> cabdf6dfa96b build 23-Mar-2018 12:13:47 Removing intermediate container 4325db74cd66 build 23-Mar-2018 12:13:47 Step 4/13 : USER root build 23-Mar-2018 12:13:47 ---> Running in 3cf4a9c3f69a build 23-Mar-2018 12:13:47 ---> c8ae130031ea build 23-Mar-2018 12:13:47 Removing intermediate container 3cf4a9c3f69a build 23-Mar-2018 12:13:47 Step 5/13 : RUN apt-get update && apt-get -y install python-dev python-numpy gcc && pip install -r /home/clowder/requirements.txt build 23-Mar-2018 12:13:48 ---> Running in 110b6a63da42 build 23-Mar-2018 12:13:48 Get:1 http://security.ubuntu.com/ubuntu xenial-security InRelease [102 kB] build 23-Mar-2018 12:13:48 Get:2 http://archive.ubuntu.com/ubuntu xenial InRelease [247 kB] build 23-Mar-2018 12:13:48 Get:3 http://security.ubuntu.com/ubuntu xenial-security/universe Sources [75.3 kB] build 23-Mar-2018 12:13:48 Get:4 http://security.ubuntu.com/ubuntu xenial-security/main amd64 Packages [592 kB] build 23-Mar-2018 12:13:48 Get:5 http://security.ubuntu.com/ubuntu xenial-security/restricted amd64 Packages [12.7 kB] build 23-Mar-2018 12:13:48 Get:6 http://security.ubuntu.com/ubuntu xenial-security/universe amd64 Packages [415 kB] build 23-Mar-2018 12:13:48 Get:7 http://security.ubuntu.com/ubuntu xenial-security/multiverse amd64 Packages [3492 B] build 23-Mar-2018 12:13:49 Get:8 http://archive.ubuntu.com/ubuntu xenial-updates InRelease [102 kB] build 23-Mar-2018 12:13:49 Get:9 http://archive.ubuntu.com/ubuntu xenial-backports InRelease [102 kB] build 23-Mar-2018 12:13:49 Get:10 http://archive.ubuntu.com/ubuntu xenial/universe Sources [9802 kB] build 23-Mar-2018 12:13:50 Get:11 http://archive.ubuntu.com/ubuntu xenial/main amd64 Packages [1558 kB] build 23-Mar-2018 12:13:50 Get:12 http://archive.ubuntu.com/ubuntu xenial/restricted amd64 Packages [14.1 kB] build 23-Mar-2018 12:13:50 Get:13 http://archive.ubuntu.com/ubuntu xenial/universe amd64 Packages [9827 kB] build 23-Mar-2018 12:13:51 Get:14 http://archive.ubuntu.com/ubuntu xenial/multiverse amd64 Packages [176 kB] build 23-Mar-2018 12:13:51 Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/universe Sources [249 kB] build 23-Mar-2018 12:13:51 Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 Packages [962 kB] build 23-Mar-2018 12:13:51 Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/restricted amd64 Packages [13.1 kB] build 23-Mar-2018 12:13:51 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 Packages [780 kB] build 23-Mar-2018 12:13:51 Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/multiverse amd64 Packages [18.5 kB] build 23-Mar-2018 12:13:51 Get:20 http://archive.ubuntu.com/ubuntu xenial-backports/main amd64 Packages [5153 B] build 23-Mar-2018 12:13:51 Get:21 http://archive.ubuntu.com/ubuntu xenial-backports/universe amd64 Packages [7696 B] build 23-Mar-2018 12:13:52 Fetched 25.1 MB in 3s (6672 kB/s) build 23-Mar-2018 12:13:53 Reading package lists... build 23-Mar-2018 12:13:53 Reading package lists... build 23-Mar-2018 12:13:54 Building dependency tree... build 23-Mar-2018 12:13:54 Reading state information... build 23-Mar-2018 12:13:54 The following additional packages will be installed: build 23-Mar-2018 12:13:54 binutils cpp cpp-5 gcc-5 libasan2 libatomic1 libblas-common libblas3 build 23-Mar-2018 12:13:54 libc-dev-bin libc6-dev libcc1-0 libcilkrts5 libexpat1-dev libgcc-5-dev build 23-Mar-2018 12:13:54 libgfortran3 libgmp10 libgomp1 libisl15 libitm1 liblapack3 liblsan0 libmpc3 build 23-Mar-2018 12:13:54 libmpfr4 libmpx0 libpython-dev libpython2.7 libpython2.7-dev libquadmath0 build 23-Mar-2018 12:13:54 libtsan0 libubsan0 linux-libc-dev manpages manpages-dev python2.7-dev build 23-Mar-2018 12:13:54 Suggested packages: build 23-Mar-2018 12:13:54 binutils-doc cpp-doc gcc-5-locales gcc-multilib make autoconf automake build 23-Mar-2018 12:13:54 libtool flex bison gdb gcc-doc gcc-5-multilib gcc-5-doc libgcc1-dbg build 23-Mar-2018 12:13:54 libgomp1-dbg libitm1-dbg libatomic1-dbg libasan2-dbg liblsan0-dbg build 23-Mar-2018 12:13:54 libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx0-dbg libquadmath0-dbg build 23-Mar-2018 12:13:54 glibc-doc man-browser gfortran python-nose python-numpy-dbg python-numpy-doc build 23-Mar-2018 12:13:54 The following NEW packages will be installed: build 23-Mar-2018 12:13:54 binutils cpp cpp-5 gcc gcc-5 libasan2 libatomic1 libblas-common libblas3 build 23-Mar-2018 12:13:54 libc-dev-bin libc6-dev libcc1-0 libcilkrts5 libexpat1-dev libgcc-5-dev build 23-Mar-2018 12:13:54 libgfortran3 libgmp10 libgomp1 libisl15 libitm1 liblapack3 liblsan0 libmpc3 build 23-Mar-2018 12:13:54 libmpfr4 libmpx0 libpython-dev libpython2.7 libpython2.7-dev libquadmath0 build 23-Mar-2018 12:13:54 libtsan0 libubsan0 linux-libc-dev manpages manpages-dev python-dev build 23-Mar-2018 12:13:54 python-numpy python2.7-dev build 23-Mar-2018 12:13:54 0 upgraded, 37 newly installed, 0 to remove and 9 not upgraded. build 23-Mar-2018 12:13:54 Need to get 62.4 MB of archives. build 23-Mar-2018 12:13:54 After this operation, 166 MB of additional disk space will be used. build 23-Mar-2018 12:13:54 Get:1 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgmp10 amd64 2:6.1.0+dfsg-2 [240 kB] build 23-Mar-2018 12:13:55 Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpfr4 amd64 3.1.4-1 [191 kB] build 23-Mar-2018 12:13:55 Get:3 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpc3 amd64 1.0.3-1 [39.7 kB] build 23-Mar-2018 12:13:55 Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 manpages all 4.04-2 [1087 kB] build 23-Mar-2018 12:13:55 Get:5 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 binutils amd64 2.26.1-1ubuntu1~16.04.6 [2311 kB] build 23-Mar-2018 12:13:55 Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libisl15 amd64 0.16.1-1 [524 kB] build 23-Mar-2018 12:13:55 Get:7 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 cpp-5 amd64 5.4.0-6ubuntu1~16.04.9 [7685 kB] build 23-Mar-2018 12:13:55 Get:8 http://archive.ubuntu.com/ubuntu xenial/main amd64 cpp amd64 4:5.3.1-1ubuntu1 [27.7 kB] build 23-Mar-2018 12:13:55 Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcc1-0 amd64 5.4.0-6ubuntu1~16.04.9 [38.8 kB] build 23-Mar-2018 12:13:55 Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgomp1 amd64 5.4.0-6ubuntu1~16.04.9 [55.0 kB] build 23-Mar-2018 12:13:55 Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libitm1 amd64 5.4.0-6ubuntu1~16.04.9 [27.4 kB] build 23-Mar-2018 12:13:55 Get:12 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libatomic1 amd64 5.4.0-6ubuntu1~16.04.9 [8882 B] build 23-Mar-2018 12:13:55 Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasan2 amd64 5.4.0-6ubuntu1~16.04.9 [264 kB] build 23-Mar-2018 12:13:55 Get:14 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 liblsan0 amd64 5.4.0-6ubuntu1~16.04.9 [105 kB] build 23-Mar-2018 12:13:55 Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtsan0 amd64 5.4.0-6ubuntu1~16.04.9 [244 kB] build 23-Mar-2018 12:13:55 Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libubsan0 amd64 5.4.0-6ubuntu1~16.04.9 [95.2 kB] build 23-Mar-2018 12:13:55 Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcilkrts5 amd64 5.4.0-6ubuntu1~16.04.9 [40.1 kB] build 23-Mar-2018 12:13:56 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmpx0 amd64 5.4.0-6ubuntu1~16.04.9 [9774 B] build 23-Mar-2018 12:13:56 Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libquadmath0 amd64 5.4.0-6ubuntu1~16.04.9 [131 kB] build 23-Mar-2018 12:13:56 Get:20 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgcc-5-dev amd64 5.4.0-6ubuntu1~16.04.9 [2242 kB] build 23-Mar-2018 12:13:56 Get:21 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gcc-5 amd64 5.4.0-6ubuntu1~16.04.9 [8650 kB] build 23-Mar-2018 12:13:56 Get:22 http://archive.ubuntu.com/ubuntu xenial/main amd64 gcc amd64 4:5.3.1-1ubuntu1 [5244 B] build 23-Mar-2018 12:13:56 Get:23 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas-common amd64 3.6.0-2ubuntu2 [5342 B] build 23-Mar-2018 12:13:56 Get:24 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas3 amd64 3.6.0-2ubuntu2 [147 kB] build 23-Mar-2018 12:13:56 Get:25 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc-dev-bin amd64 2.23-0ubuntu10 [68.7 kB] build 23-Mar-2018 12:13:56 Get:26 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 linux-libc-dev amd64 4.4.0-116.140 [823 kB] build 23-Mar-2018 12:13:56 Get:27 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc6-dev amd64 2.23-0ubuntu10 [2079 kB] build 23-Mar-2018 12:13:56 Get:28 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libexpat1-dev amd64 2.1.0-7ubuntu0.16.04.3 [115 kB] build 23-Mar-2018 12:13:56 Get:29 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran3 amd64 5.4.0-6ubuntu1~16.04.9 [260 kB] build 23-Mar-2018 12:13:56 Get:30 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblapack3 amd64 3.6.0-2ubuntu2 [1938 kB] build 23-Mar-2018 12:13:56 Get:31 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7 amd64 2.7.12-1ubuntu0~16.04.3 [1070 kB] build 23-Mar-2018 12:13:56 Get:32 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-dev amd64 2.7.12-1ubuntu0~16.04.3 [27.8 MB] build 23-Mar-2018 12:13:57 Get:33 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython-dev amd64 2.7.12-1~16.04 [7840 B] build 23-Mar-2018 12:13:57 Get:34 http://archive.ubuntu.com/ubuntu xenial/main amd64 manpages-dev all 4.04-2 [2048 kB] build 23-Mar-2018 12:13:57 Get:35 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7-dev amd64 2.7.12-1ubuntu0~16.04.3 [276 kB] build 23-Mar-2018 12:13:57 Get:36 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-dev amd64 2.7.12-1~16.04 [1186 B] build 23-Mar-2018 12:13:57 Get:37 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-numpy amd64 1:1.11.0-1ubuntu1 [1763 kB] build 23-Mar-2018 12:13:58 debconf: delaying package configuration, since apt-utils is not installed build 23-Mar-2018 12:13:58 Fetched 62.4 MB in 3s (18.5 MB/s) build 23-Mar-2018 12:13:58 Selecting previously unselected package libgmp10:amd64. build 23-Mar-2018 12:13:58 (Reading database ... build 23-Mar-2018 12:13:58 (Reading database ... 5% build 23-Mar-2018 12:13:58 (Reading database ... 10% build 23-Mar-2018 12:13:58 (Reading database ... 15% build 23-Mar-2018 12:13:58 (Reading database ... 20% build 23-Mar-2018 12:13:58 (Reading database ... 25% build 23-Mar-2018 12:13:58 (Reading database ... 30% build 23-Mar-2018 12:13:58 (Reading database ... 35% build 23-Mar-2018 12:13:58 (Reading database ... 40% build 23-Mar-2018 12:13:58 (Reading database ... 45% build 23-Mar-2018 12:13:58 (Reading database ... 50% build 23-Mar-2018 12:13:58 (Reading database ... 55% build 23-Mar-2018 12:13:58 (Reading database ... 60% build 23-Mar-2018 12:13:58 (Reading database ... 65% build 23-Mar-2018 12:13:58 (Reading database ... 70% build 23-Mar-2018 12:13:58 (Reading database ... 75% build 23-Mar-2018 12:13:58 (Reading database ... 80% build 23-Mar-2018 12:13:58 (Reading database ... 85% build 23-Mar-2018 12:13:58 (Reading database ... 90% build 23-Mar-2018 12:13:58 (Reading database ... 95% build 23-Mar-2018 12:13:58 (Reading database ... 100% build 23-Mar-2018 12:13:58 (Reading database ... 6075 files and directories currently installed.) build 23-Mar-2018 12:13:58 Preparing to unpack .../libgmp10_2%3a6.1.0+dfsg-2_amd64.deb ... build 23-Mar-2018 12:13:59 Unpacking libgmp10:amd64 (2:6.1.0+dfsg-2) ... build 23-Mar-2018 12:13:59 Selecting previously unselected package libmpfr4:amd64. build 23-Mar-2018 12:13:59 Preparing to unpack .../libmpfr4_3.1.4-1_amd64.deb ... build 23-Mar-2018 12:13:59 Unpacking libmpfr4:amd64 (3.1.4-1) ... build 23-Mar-2018 12:14:00 Selecting previously unselected package libmpc3:amd64. build 23-Mar-2018 12:14:00 Preparing to unpack .../libmpc3_1.0.3-1_amd64.deb ... build 23-Mar-2018 12:14:01 Unpacking libmpc3:amd64 (1.0.3-1) ... build 23-Mar-2018 12:14:02 Selecting previously unselected package manpages. build 23-Mar-2018 12:14:02 Preparing to unpack .../manpages_4.04-2_all.deb ... build 23-Mar-2018 12:14:02 Unpacking manpages (4.04-2) ... build 23-Mar-2018 12:14:03 Selecting previously unselected package binutils. build 23-Mar-2018 12:14:03 Preparing to unpack .../binutils_2.26.1-1ubuntu1~16.04.6_amd64.deb ... build 23-Mar-2018 12:14:03 Unpacking binutils (2.26.1-1ubuntu1~16.04.6) ... build 23-Mar-2018 12:14:04 Selecting previously unselected package libisl15:amd64. build 23-Mar-2018 12:14:04 Preparing to unpack .../libisl15_0.16.1-1_amd64.deb ... build 23-Mar-2018 12:14:04 Unpacking libisl15:amd64 (0.16.1-1) ... build 23-Mar-2018 12:14:05 Selecting previously unselected package cpp-5. build 23-Mar-2018 12:14:05 Preparing to unpack .../cpp-5_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 23-Mar-2018 12:14:05 Unpacking cpp-5 (5.4.0-6ubuntu1~16.04.9) ... build 23-Mar-2018 12:14:06 Selecting previously unselected package cpp. build 23-Mar-2018 12:14:06 Preparing to unpack .../cpp_4%3a5.3.1-1ubuntu1_amd64.deb ... build 23-Mar-2018 12:14:06 Unpacking cpp (4:5.3.1-1ubuntu1) ... build 23-Mar-2018 12:14:07 Selecting previously unselected package libcc1-0:amd64. build 23-Mar-2018 12:14:07 Preparing to unpack .../libcc1-0_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 23-Mar-2018 12:14:07 Unpacking libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 23-Mar-2018 12:14:07 Selecting previously unselected package libgomp1:amd64. build 23-Mar-2018 12:14:07 Preparing to unpack .../libgomp1_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 23-Mar-2018 12:14:07 Unpacking libgomp1:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 23-Mar-2018 12:14:08 Selecting previously unselected package libitm1:amd64. build 23-Mar-2018 12:14:08 Preparing to unpack .../libitm1_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 23-Mar-2018 12:14:08 Unpacking libitm1:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 23-Mar-2018 12:14:08 Selecting previously unselected package libatomic1:amd64. build 23-Mar-2018 12:14:08 Preparing to unpack .../libatomic1_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 23-Mar-2018 12:14:08 Unpacking libatomic1:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 23-Mar-2018 12:14:09 Selecting previously unselected package libasan2:amd64. build 23-Mar-2018 12:14:09 Preparing to unpack .../libasan2_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 23-Mar-2018 12:14:09 Unpacking libasan2:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 23-Mar-2018 12:14:10 Selecting previously unselected package liblsan0:amd64. build 23-Mar-2018 12:14:10 Preparing to unpack .../liblsan0_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 23-Mar-2018 12:14:10 Unpacking liblsan0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 23-Mar-2018 12:14:11 Selecting previously unselected package libtsan0:amd64. build 23-Mar-2018 12:14:11 Preparing to unpack .../libtsan0_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 23-Mar-2018 12:14:11 Unpacking libtsan0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 23-Mar-2018 12:14:12 Selecting previously unselected package libubsan0:amd64. build 23-Mar-2018 12:14:12 Preparing to unpack .../libubsan0_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 23-Mar-2018 12:14:12 Unpacking libubsan0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 23-Mar-2018 12:14:12 Selecting previously unselected package libcilkrts5:amd64. build 23-Mar-2018 12:14:12 Preparing to unpack .../libcilkrts5_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 23-Mar-2018 12:14:13 Unpacking libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 23-Mar-2018 12:14:13 Selecting previously unselected package libmpx0:amd64. build 23-Mar-2018 12:14:13 Preparing to unpack .../libmpx0_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 23-Mar-2018 12:14:13 Unpacking libmpx0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 23-Mar-2018 12:14:14 Selecting previously unselected package libquadmath0:amd64. build 23-Mar-2018 12:14:14 Preparing to unpack .../libquadmath0_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 23-Mar-2018 12:14:14 Unpacking libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 23-Mar-2018 12:14:14 Selecting previously unselected package libgcc-5-dev:amd64. build 23-Mar-2018 12:14:14 Preparing to unpack .../libgcc-5-dev_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 23-Mar-2018 12:14:14 Unpacking libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 23-Mar-2018 12:14:16 Selecting previously unselected package gcc-5. build 23-Mar-2018 12:14:16 Preparing to unpack .../gcc-5_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 23-Mar-2018 12:14:16 Unpacking gcc-5 (5.4.0-6ubuntu1~16.04.9) ... build 23-Mar-2018 12:14:17 Selecting previously unselected package gcc. build 23-Mar-2018 12:14:17 Preparing to unpack .../gcc_4%3a5.3.1-1ubuntu1_amd64.deb ... build 23-Mar-2018 12:14:17 Unpacking gcc (4:5.3.1-1ubuntu1) ... build 23-Mar-2018 12:14:17 Selecting previously unselected package libblas-common. build 23-Mar-2018 12:14:17 Preparing to unpack .../libblas-common_3.6.0-2ubuntu2_amd64.deb ... build 23-Mar-2018 12:14:17 Unpacking libblas-common (3.6.0-2ubuntu2) ... build 23-Mar-2018 12:14:18 Selecting previously unselected package libblas3. build 23-Mar-2018 12:14:18 Preparing to unpack .../libblas3_3.6.0-2ubuntu2_amd64.deb ... build 23-Mar-2018 12:14:18 Unpacking libblas3 (3.6.0-2ubuntu2) ... build 23-Mar-2018 12:14:18 Selecting previously unselected package libc-dev-bin. build 23-Mar-2018 12:14:18 Preparing to unpack .../libc-dev-bin_2.23-0ubuntu10_amd64.deb ... build 23-Mar-2018 12:14:18 Unpacking libc-dev-bin (2.23-0ubuntu10) ... build 23-Mar-2018 12:14:19 Selecting previously unselected package linux-libc-dev:amd64. build 23-Mar-2018 12:14:19 Preparing to unpack .../linux-libc-dev_4.4.0-116.140_amd64.deb ... build 23-Mar-2018 12:14:19 Unpacking linux-libc-dev:amd64 (4.4.0-116.140) ... build 23-Mar-2018 12:14:20 Selecting previously unselected package libc6-dev:amd64. build 23-Mar-2018 12:14:20 Preparing to unpack .../libc6-dev_2.23-0ubuntu10_amd64.deb ... build 23-Mar-2018 12:14:20 Unpacking libc6-dev:amd64 (2.23-0ubuntu10) ... build 23-Mar-2018 12:14:21 Selecting previously unselected package libexpat1-dev:amd64. build 23-Mar-2018 12:14:21 Preparing to unpack .../libexpat1-dev_2.1.0-7ubuntu0.16.04.3_amd64.deb ... build 23-Mar-2018 12:14:21 Unpacking libexpat1-dev:amd64 (2.1.0-7ubuntu0.16.04.3) ... build 23-Mar-2018 12:14:22 Selecting previously unselected package libgfortran3:amd64. build 23-Mar-2018 12:14:22 Preparing to unpack .../libgfortran3_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 23-Mar-2018 12:14:23 Unpacking libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 23-Mar-2018 12:14:23 Selecting previously unselected package liblapack3. build 23-Mar-2018 12:14:23 Preparing to unpack .../liblapack3_3.6.0-2ubuntu2_amd64.deb ... build 23-Mar-2018 12:14:23 Unpacking liblapack3 (3.6.0-2ubuntu2) ... build 23-Mar-2018 12:14:24 Selecting previously unselected package libpython2.7:amd64. build 23-Mar-2018 12:14:24 Preparing to unpack .../libpython2.7_2.7.12-1ubuntu0~16.04.3_amd64.deb ... build 23-Mar-2018 12:14:24 Unpacking libpython2.7:amd64 (2.7.12-1ubuntu0~16.04.3) ... build 23-Mar-2018 12:14:25 Selecting previously unselected package libpython2.7-dev:amd64. build 23-Mar-2018 12:14:25 Preparing to unpack .../libpython2.7-dev_2.7.12-1ubuntu0~16.04.3_amd64.deb ... build 23-Mar-2018 12:14:25 Unpacking libpython2.7-dev:amd64 (2.7.12-1ubuntu0~16.04.3) ... build 23-Mar-2018 12:14:27 Selecting previously unselected package libpython-dev:amd64. build 23-Mar-2018 12:14:27 Preparing to unpack .../libpython-dev_2.7.12-1~16.04_amd64.deb ... build 23-Mar-2018 12:14:27 Unpacking libpython-dev:amd64 (2.7.12-1~16.04) ... build 23-Mar-2018 12:14:28 Selecting previously unselected package manpages-dev. build 23-Mar-2018 12:14:28 Preparing to unpack .../manpages-dev_4.04-2_all.deb ... build 23-Mar-2018 12:14:28 Unpacking manpages-dev (4.04-2) ... build 23-Mar-2018 12:14:29 Selecting previously unselected package python2.7-dev. build 23-Mar-2018 12:14:29 Preparing to unpack .../python2.7-dev_2.7.12-1ubuntu0~16.04.3_amd64.deb ... build 23-Mar-2018 12:14:29 Unpacking python2.7-dev (2.7.12-1ubuntu0~16.04.3) ... build 23-Mar-2018 12:14:29 Selecting previously unselected package python-dev. build 23-Mar-2018 12:14:29 Preparing to unpack .../python-dev_2.7.12-1~16.04_amd64.deb ... build 23-Mar-2018 12:14:29 Unpacking python-dev (2.7.12-1~16.04) ... build 23-Mar-2018 12:14:30 Selecting previously unselected package python-numpy. build 23-Mar-2018 12:14:30 Preparing to unpack .../python-numpy_1%3a1.11.0-1ubuntu1_amd64.deb ... build 23-Mar-2018 12:14:30 Unpacking python-numpy (1:1.11.0-1ubuntu1) ... build 23-Mar-2018 12:14:30 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 23-Mar-2018 12:14:31 Setting up libgmp10:amd64 (2:6.1.0+dfsg-2) ... build 23-Mar-2018 12:14:32 Setting up libmpfr4:amd64 (3.1.4-1) ... build 23-Mar-2018 12:14:32 Setting up libmpc3:amd64 (1.0.3-1) ... build 23-Mar-2018 12:14:33 Setting up manpages (4.04-2) ... build 23-Mar-2018 12:14:33 Setting up binutils (2.26.1-1ubuntu1~16.04.6) ... build 23-Mar-2018 12:14:33 Setting up libisl15:amd64 (0.16.1-1) ... build 23-Mar-2018 12:14:33 Setting up cpp-5 (5.4.0-6ubuntu1~16.04.9) ... build 23-Mar-2018 12:14:34 Setting up cpp (4:5.3.1-1ubuntu1) ... build 23-Mar-2018 12:14:35 Setting up libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 23-Mar-2018 12:14:35 Setting up libgomp1:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 23-Mar-2018 12:14:35 Setting up libitm1:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 23-Mar-2018 12:14:35 Setting up libatomic1:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 23-Mar-2018 12:14:36 Setting up libasan2:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 23-Mar-2018 12:14:36 Setting up liblsan0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 23-Mar-2018 12:14:36 Setting up libtsan0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 23-Mar-2018 12:14:36 Setting up libubsan0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 23-Mar-2018 12:14:36 Setting up libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 23-Mar-2018 12:14:37 Setting up libmpx0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 23-Mar-2018 12:14:37 Setting up libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 23-Mar-2018 12:14:37 Setting up libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 23-Mar-2018 12:14:37 Setting up gcc-5 (5.4.0-6ubuntu1~16.04.9) ... build 23-Mar-2018 12:14:38 Setting up gcc (4:5.3.1-1ubuntu1) ... build 23-Mar-2018 12:14:38 Setting up libblas-common (3.6.0-2ubuntu2) ... build 23-Mar-2018 12:14:38 Setting up libblas3 (3.6.0-2ubuntu2) ... build 23-Mar-2018 12:14:38 update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode build 23-Mar-2018 12:14:38 Setting up libc-dev-bin (2.23-0ubuntu10) ... build 23-Mar-2018 12:14:39 Setting up linux-libc-dev:amd64 (4.4.0-116.140) ... build 23-Mar-2018 12:14:39 Setting up libc6-dev:amd64 (2.23-0ubuntu10) ... build 23-Mar-2018 12:14:39 Setting up libexpat1-dev:amd64 (2.1.0-7ubuntu0.16.04.3) ... build 23-Mar-2018 12:14:40 Setting up libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 23-Mar-2018 12:14:40 Setting up liblapack3 (3.6.0-2ubuntu2) ... build 23-Mar-2018 12:14:40 update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode build 23-Mar-2018 12:14:40 Setting up libpython2.7:amd64 (2.7.12-1ubuntu0~16.04.3) ... build 23-Mar-2018 12:14:41 Setting up libpython2.7-dev:amd64 (2.7.12-1ubuntu0~16.04.3) ... build 23-Mar-2018 12:14:41 Setting up libpython-dev:amd64 (2.7.12-1~16.04) ... build 23-Mar-2018 12:14:42 Setting up manpages-dev (4.04-2) ... build 23-Mar-2018 12:14:42 Setting up python2.7-dev (2.7.12-1ubuntu0~16.04.3) ... build 23-Mar-2018 12:14:42 Setting up python-dev (2.7.12-1~16.04) ... build 23-Mar-2018 12:14:43 Setting up python-numpy (1:1.11.0-1ubuntu1) ... build 23-Mar-2018 12:14:45 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 23-Mar-2018 12:14:46 Collecting Flask==0.10.1 (from -r /home/clowder/requirements.txt (line 1)) build 23-Mar-2018 12:14:46 Downloading Flask-0.10.1.tar.gz (544kB) build 23-Mar-2018 12:14:47 Collecting html5lib==0.99999 (from -r /home/clowder/requirements.txt (line 2)) build 23-Mar-2018 12:14:47 Downloading html5lib-0.99999.tar.gz (887kB) build 23-Mar-2018 12:14:47 Collecting isodate==0.5.1 (from -r /home/clowder/requirements.txt (line 3)) build 23-Mar-2018 12:14:47 Downloading isodate-0.5.1.tar.gz build 23-Mar-2018 12:14:47 Collecting itsdangerous==0.24 (from -r /home/clowder/requirements.txt (line 4)) build 23-Mar-2018 12:14:47 Downloading itsdangerous-0.24.tar.gz (46kB) build 23-Mar-2018 12:14:48 Collecting Jinja2==2.7.3 (from -r /home/clowder/requirements.txt (line 5)) build 23-Mar-2018 12:14:48 Downloading Jinja2-2.7.3.tar.gz (378kB) build 23-Mar-2018 12:14:48 Collecting MarkupSafe==0.23 (from -r /home/clowder/requirements.txt (line 6)) build 23-Mar-2018 12:14:48 Downloading MarkupSafe-0.23.tar.gz build 23-Mar-2018 12:14:48 Collecting nltk==3.0.3 (from -r /home/clowder/requirements.txt (line 7)) build 23-Mar-2018 12:14:48 Downloading nltk-3.0.3.zip (1.2MB) build 23-Mar-2018 12:14:49 Requirement already satisfied (use --upgrade to upgrade): pika==0.10.0 in /usr/local/lib/python2.7/dist-packages (from -r /home/clowder/requirements.txt (line 9)) build 23-Mar-2018 12:14:49 Collecting pyparsing==2.0.3 (from -r /home/clowder/requirements.txt (line 11)) build 23-Mar-2018 12:14:49 Downloading pyparsing-2.0.3-py2.py3-none-any.whl build 23-Mar-2018 12:14:49 Collecting rdflib==4.2.0 (from -r /home/clowder/requirements.txt (line 12)) build 23-Mar-2018 12:14:49 Downloading rdflib-4.2.0.tar.gz (881kB) build 23-Mar-2018 12:14:50 Collecting requests==2.7.0 (from -r /home/clowder/requirements.txt (line 13)) build 23-Mar-2018 12:14:50 Downloading requests-2.7.0-py2.py3-none-any.whl (470kB) build 23-Mar-2018 12:14:50 Collecting six==1.9.0 (from -r /home/clowder/requirements.txt (line 14)) build 23-Mar-2018 12:14:50 Downloading six-1.9.0-py2.py3-none-any.whl build 23-Mar-2018 12:14:51 Collecting SPARQLWrapper==1.6.4 (from -r /home/clowder/requirements.txt (line 15)) build 23-Mar-2018 12:14:51 Downloading SPARQLWrapper-1.6.4.tar.gz build 23-Mar-2018 12:14:51 Collecting Werkzeug==0.10.4 (from -r /home/clowder/requirements.txt (line 16)) build 23-Mar-2018 12:14:51 Downloading Werkzeug-0.10.4-py2.py3-none-any.whl (293kB) build 23-Mar-2018 12:14:51 Requirement already satisfied (use --upgrade to upgrade): wheel==0.24.0 in /usr/local/lib/python2.7/dist-packages (from -r /home/clowder/requirements.txt (line 17)) build 23-Mar-2018 12:14:51 Building wheels for collected packages: Flask, html5lib, isodate, itsdangerous, Jinja2, MarkupSafe, nltk, rdflib, SPARQLWrapper build 23-Mar-2018 12:14:51 Running setup.py bdist_wheel for Flask: started build 23-Mar-2018 12:14:51 Running setup.py bdist_wheel for Flask: finished with status 'done' build 23-Mar-2018 12:14:51 Stored in directory: /root/.cache/pip/wheels/b6/09/65/5fcf16f74f334a215447c26769e291c41883862fe0dc7c1430 build 23-Mar-2018 12:14:51 Running setup.py bdist_wheel for html5lib: started build 23-Mar-2018 12:14:52 Running setup.py bdist_wheel for html5lib: finished with status 'done' build 23-Mar-2018 12:14:52 Stored in directory: /root/.cache/pip/wheels/2e/c5/b7/8d03c5466479481371de951021d29c0aaa4995cd17cc25aa6a build 23-Mar-2018 12:14:52 Running setup.py bdist_wheel for isodate: started build 23-Mar-2018 12:14:52 Running setup.py bdist_wheel for isodate: finished with status 'done' build 23-Mar-2018 12:14:52 Stored in directory: /root/.cache/pip/wheels/52/11/96/423cd418a0207a9d5029e9b871d78d3715c2de8d8a8adf31a8 build 23-Mar-2018 12:14:52 Running setup.py bdist_wheel for itsdangerous: started build 23-Mar-2018 12:14:52 Running setup.py bdist_wheel for itsdangerous: finished with status 'done' build 23-Mar-2018 12:14:52 Stored in directory: /root/.cache/pip/wheels/fc/a8/66/24d655233c757e178d45dea2de22a04c6d92766abfb741129a build 23-Mar-2018 12:14:52 Running setup.py bdist_wheel for Jinja2: started build 23-Mar-2018 12:14:52 Running setup.py bdist_wheel for Jinja2: finished with status 'done' build 23-Mar-2018 12:14:52 Stored in directory: /root/.cache/pip/wheels/ea/d6/b1/389cd2f50d24ce359eb1f4005965da619ef62316226b2d430d build 23-Mar-2018 12:14:52 Running setup.py bdist_wheel for MarkupSafe: started build 23-Mar-2018 12:14:53 Running setup.py bdist_wheel for MarkupSafe: finished with status 'done' build 23-Mar-2018 12:14:53 Stored in directory: /root/.cache/pip/wheels/a3/fa/dc/0198eed9ad95489b8a4f45d14dd5d2aee3f8984e46862c5748 build 23-Mar-2018 12:14:53 Running setup.py bdist_wheel for nltk: started build 23-Mar-2018 12:14:53 Running setup.py bdist_wheel for nltk: finished with status 'done' build 23-Mar-2018 12:14:53 Stored in directory: /root/.cache/pip/wheels/cd/bf/8d/c1eb3754a35c7893308f47223d1509a9fcb18b81ff1b74c76e build 23-Mar-2018 12:14:53 Running setup.py bdist_wheel for rdflib: started build 23-Mar-2018 12:14:54 Running setup.py bdist_wheel for rdflib: finished with status 'done' build 23-Mar-2018 12:14:54 Stored in directory: /root/.cache/pip/wheels/27/b3/d3/9477b1556097d3a0f255e3d983448a90453f9f36d8ed4288f1 build 23-Mar-2018 12:14:54 Running setup.py bdist_wheel for SPARQLWrapper: started build 23-Mar-2018 12:14:55 Running setup.py bdist_wheel for SPARQLWrapper: finished with status 'done' build 23-Mar-2018 12:14:55 Stored in directory: /root/.cache/pip/wheels/56/f1/14/0449059048fbcfd570593f7be321b2958f69fea677d0ecec57 build 23-Mar-2018 12:14:55 Successfully built Flask html5lib isodate itsdangerous Jinja2 MarkupSafe nltk rdflib SPARQLWrapper build 23-Mar-2018 12:14:55 Installing collected packages: Werkzeug, MarkupSafe, Jinja2, itsdangerous, Flask, six, html5lib, isodate, nltk, pyparsing, SPARQLWrapper, rdflib, requests build 23-Mar-2018 12:14:56 Found existing installation: requests 2.10.0 build 23-Mar-2018 12:14:56 Uninstalling requests-2.10.0: build 23-Mar-2018 12:15:04 Successfully uninstalled requests-2.10.0 build 23-Mar-2018 12:15:04 Successfully installed Flask-0.10.1 Jinja2-2.7.3 MarkupSafe-0.23 SPARQLWrapper-1.6.4 Werkzeug-0.10.4 html5lib-0.99999 isodate-0.5.1 itsdangerous-0.24 nltk-3.0.3 pyparsing-2.0.3 rdflib-4.2.0 requests-2.7.0 six-1.9.0 build 23-Mar-2018 12:15:05 You are using pip version 8.1.1, however version 9.0.3 is available. build 23-Mar-2018 12:15:05 You should consider upgrading via the 'pip install --upgrade pip' command. build 23-Mar-2018 12:15:08  ---> 563a4c52c4a1 build 23-Mar-2018 12:15:08 Removing intermediate container 110b6a63da42 build 23-Mar-2018 12:15:08 Step 6/13 : USER clowder build 23-Mar-2018 12:15:09 ---> Running in 42c14264b380 build 23-Mar-2018 12:15:09 ---> 2e9ade0db7e1 build 23-Mar-2018 12:15:09 Removing intermediate container 42c14264b380 build 23-Mar-2018 12:15:09 Step 7/13 : COPY namedentityrecognition.py /home/clowder/ build 23-Mar-2018 12:15:10 ---> 68db3f5f4e92 build 23-Mar-2018 12:15:10 Removing intermediate container d9bd1c627017 build 23-Mar-2018 12:15:10 Step 8/13 : RUN /home/clowder/namedentityrecognition.py build 23-Mar-2018 12:15:10 ---> Running in f219786db591 build 23-Mar-2018 12:15:13 [nltk_data] Downloading package punkt to /home/clowder/nltk_data... build 23-Mar-2018 12:15:13 [nltk_data] Unzipping tokenizers/punkt.zip. build 23-Mar-2018 12:15:13 [nltk_data] Downloading package maxent_treebank_pos_tagger to build 23-Mar-2018 12:15:13 [nltk_data] /home/clowder/nltk_data... build 23-Mar-2018 12:15:13 [nltk_data] Unzipping taggers/maxent_treebank_pos_tagger.zip. build 23-Mar-2018 12:15:13 [] build 23-Mar-2018 12:15:13 [] build 23-Mar-2018 12:15:15 ---> 3f26fe6f992e build 23-Mar-2018 12:15:15 Removing intermediate container f219786db591 build 23-Mar-2018 12:15:15 Step 9/13 : ENV RABBITMQ_URI "" RABBITMQ_EXCHANGE "clowder" RABBITMQ_VHOST "%2F" RABBITMQ_QUEUE "ncsa.dbpedia" MAIN_SCRIPT "extractor.py" build 23-Mar-2018 12:15:15 ---> Running in d3634a3fe852 build 23-Mar-2018 12:15:15 ---> 1914b29bf83b build 23-Mar-2018 12:15:15 Removing intermediate container d3634a3fe852 build 23-Mar-2018 12:15:15 Step 10/13 : USER clowder build 23-Mar-2018 12:15:16 ---> Running in f6aa1efe92f7 build 23-Mar-2018 12:15:16 ---> d308c157698c build 23-Mar-2018 12:15:17 Removing intermediate container f6aa1efe92f7 build 23-Mar-2018 12:15:17 Step 11/13 : COPY entrypoint.sh *.py *.json /home/clowder/ build 23-Mar-2018 12:15:18 ---> eedc417d15a5 build 23-Mar-2018 12:15:18 Removing intermediate container 9e4311d6a318 build 23-Mar-2018 12:15:18 Step 12/13 : ENTRYPOINT /home/clowder/entrypoint.sh build 23-Mar-2018 12:15:18 ---> Running in 5c9bf9fb288b build 23-Mar-2018 12:15:19 ---> 68b3b67a9ac2 build 23-Mar-2018 12:15:19 Removing intermediate container 5c9bf9fb288b build 23-Mar-2018 12:15:19 Step 13/13 : CMD extractor build 23-Mar-2018 12:15:19 ---> Running in 78cb02eada78 build 23-Mar-2018 12:15:19 ---> 4125695c20b7 build 23-Mar-2018 12:15:19 Removing intermediate container 78cb02eada78 build 23-Mar-2018 12:15:19 Successfully built 4125695c20b7 build 23-Mar-2018 12:15:20 The push refers to a repository [docker.io/clowder/extractors-dbpedia] build 23-Mar-2018 12:15:20 3c0bee6fa62a: Preparing build 23-Mar-2018 12:15:20 a24b73c84ae7: Preparing build 23-Mar-2018 12:15:20 7091f0088c05: Preparing build 23-Mar-2018 12:15:20 63589c3b6746: Preparing build 23-Mar-2018 12:15:20 c12be0f52c02: Preparing build 23-Mar-2018 12:15:20 ee76f3c0991a: Preparing build 23-Mar-2018 12:15:20 dea3a5ebe148: Preparing build 23-Mar-2018 12:15:20 ea629ed98c08: Preparing build 23-Mar-2018 12:15:20 f179394de2a7: Preparing build 23-Mar-2018 12:15:20 db584c622b50: Preparing build 23-Mar-2018 12:15:20 52a7ea2bb533: Preparing build 23-Mar-2018 12:15:20 52f389ea437e: Preparing build 23-Mar-2018 12:15:20 88888b9b1b5b: Preparing build 23-Mar-2018 12:15:20 a94e0d5a7c40: Preparing build 23-Mar-2018 12:15:20 ee76f3c0991a: Waiting build 23-Mar-2018 12:15:20 dea3a5ebe148: Waiting build 23-Mar-2018 12:15:20 52f389ea437e: Waiting build 23-Mar-2018 12:15:20 88888b9b1b5b: Waiting build 23-Mar-2018 12:15:20 f179394de2a7: Waiting build 23-Mar-2018 12:15:20 a94e0d5a7c40: Waiting build 23-Mar-2018 12:15:20 52a7ea2bb533: Waiting build 23-Mar-2018 12:15:20 db584c622b50: Waiting build 23-Mar-2018 12:15:20 ea629ed98c08: Waiting build 23-Mar-2018 12:15:21 c12be0f52c02: Pushed build 23-Mar-2018 12:15:21 7091f0088c05: Pushed build 23-Mar-2018 12:15:21 3c0bee6fa62a: Pushed build 23-Mar-2018 12:15:22 ee76f3c0991a: Mounted from clowder/extractors-siegfried build 23-Mar-2018 12:15:22 dea3a5ebe148: Mounted from clowder/extractors-siegfried build 23-Mar-2018 12:15:22 ea629ed98c08: Mounted from clowder/extractors-siegfried build 23-Mar-2018 12:15:22 db584c622b50: Mounted from clowder/extractors-siegfried build 23-Mar-2018 12:15:22 f179394de2a7: Mounted from clowder/extractors-siegfried build 23-Mar-2018 12:15:23 52a7ea2bb533: Mounted from clowder/extractors-siegfried build 23-Mar-2018 12:15:23 52f389ea437e: Mounted from clowder/extractors-siegfried build 23-Mar-2018 12:15:23 88888b9b1b5b: Mounted from clowder/extractors-siegfried build 23-Mar-2018 12:15:24 a94e0d5a7c40: Mounted from clowder/extractors-siegfried build 23-Mar-2018 12:15:31 a24b73c84ae7: Pushed build 23-Mar-2018 12:15:37 63589c3b6746: Pushed build 23-Mar-2018 12:15:39 browndog_v0.2.0: digest: sha256:bf89a958a0b51033a9f02163851b46995a3aa01b59e1756ec36bfc43e09ccc8f size: 3243 build 23-Mar-2018 12:15:39 The push refers to a repository [docker.io/clowder/extractors-dbpedia] build 23-Mar-2018 12:15:39 3c0bee6fa62a: Preparing build 23-Mar-2018 12:15:39 a24b73c84ae7: Preparing build 23-Mar-2018 12:15:39 7091f0088c05: Preparing build 23-Mar-2018 12:15:39 63589c3b6746: Preparing build 23-Mar-2018 12:15:39 c12be0f52c02: Preparing build 23-Mar-2018 12:15:39 ee76f3c0991a: Preparing build 23-Mar-2018 12:15:39 dea3a5ebe148: Preparing build 23-Mar-2018 12:15:39 ea629ed98c08: Preparing build 23-Mar-2018 12:15:39 f179394de2a7: Preparing build 23-Mar-2018 12:15:39 db584c622b50: Preparing build 23-Mar-2018 12:15:39 52a7ea2bb533: Preparing build 23-Mar-2018 12:15:39 52f389ea437e: Preparing build 23-Mar-2018 12:15:39 88888b9b1b5b: Preparing build 23-Mar-2018 12:15:39 a94e0d5a7c40: Preparing build 23-Mar-2018 12:15:39 f179394de2a7: Waiting build 23-Mar-2018 12:15:39 db584c622b50: Waiting build 23-Mar-2018 12:15:39 52a7ea2bb533: Waiting build 23-Mar-2018 12:15:39 52f389ea437e: Waiting build 23-Mar-2018 12:15:39 88888b9b1b5b: Waiting build 23-Mar-2018 12:15:39 a94e0d5a7c40: Waiting build 23-Mar-2018 12:15:39 ee76f3c0991a: Waiting build 23-Mar-2018 12:15:39 ea629ed98c08: Waiting build 23-Mar-2018 12:15:39 a24b73c84ae7: Layer already exists build 23-Mar-2018 12:15:39 7091f0088c05: Layer already exists build 23-Mar-2018 12:15:39 63589c3b6746: Layer already exists build 23-Mar-2018 12:15:39 3c0bee6fa62a: Layer already exists build 23-Mar-2018 12:15:39 c12be0f52c02: Layer already exists build 23-Mar-2018 12:15:40 f179394de2a7: Layer already exists build 23-Mar-2018 12:15:40 ee76f3c0991a: Layer already exists build 23-Mar-2018 12:15:40 dea3a5ebe148: Layer already exists build 23-Mar-2018 12:15:40 ea629ed98c08: Layer already exists build 23-Mar-2018 12:15:40 db584c622b50: Layer already exists build 23-Mar-2018 12:15:40 52f389ea437e: Layer already exists build 23-Mar-2018 12:15:40 52a7ea2bb533: Layer already exists build 23-Mar-2018 12:15:40 88888b9b1b5b: Layer already exists build 23-Mar-2018 12:15:40 a94e0d5a7c40: Layer already exists build 23-Mar-2018 12:15:40 browndog_v0.3.0: digest: sha256:bf89a958a0b51033a9f02163851b46995a3aa01b59e1756ec36bfc43e09ccc8f size: 3243 build 23-Mar-2018 12:15:40 The push refers to a repository [docker.io/clowder/extractors-dbpedia] build 23-Mar-2018 12:15:40 3c0bee6fa62a: Preparing build 23-Mar-2018 12:15:40 a24b73c84ae7: Preparing build 23-Mar-2018 12:15:40 7091f0088c05: Preparing build 23-Mar-2018 12:15:40 63589c3b6746: Preparing build 23-Mar-2018 12:15:40 c12be0f52c02: Preparing build 23-Mar-2018 12:15:40 ee76f3c0991a: Preparing build 23-Mar-2018 12:15:40 dea3a5ebe148: Preparing build 23-Mar-2018 12:15:40 ea629ed98c08: Preparing build 23-Mar-2018 12:15:40 f179394de2a7: Preparing build 23-Mar-2018 12:15:40 db584c622b50: Preparing build 23-Mar-2018 12:15:40 52a7ea2bb533: Preparing build 23-Mar-2018 12:15:40 52f389ea437e: Preparing build 23-Mar-2018 12:15:40 88888b9b1b5b: Preparing build 23-Mar-2018 12:15:40 a94e0d5a7c40: Preparing build 23-Mar-2018 12:15:40 ee76f3c0991a: Waiting build 23-Mar-2018 12:15:40 dea3a5ebe148: Waiting build 23-Mar-2018 12:15:40 ea629ed98c08: Waiting build 23-Mar-2018 12:15:40 f179394de2a7: Waiting build 23-Mar-2018 12:15:40 db584c622b50: Waiting build 23-Mar-2018 12:15:40 52a7ea2bb533: Waiting build 23-Mar-2018 12:15:40 52f389ea437e: Waiting build 23-Mar-2018 12:15:40 88888b9b1b5b: Waiting build 23-Mar-2018 12:15:40 a94e0d5a7c40: Waiting build 23-Mar-2018 12:15:41 a24b73c84ae7: Layer already exists build 23-Mar-2018 12:15:41 7091f0088c05: Layer already exists build 23-Mar-2018 12:15:41 63589c3b6746: Layer already exists build 23-Mar-2018 12:15:41 3c0bee6fa62a: Layer already exists build 23-Mar-2018 12:15:41 c12be0f52c02: Layer already exists build 23-Mar-2018 12:15:41 ee76f3c0991a: Layer already exists build 23-Mar-2018 12:15:41 f179394de2a7: Layer already exists build 23-Mar-2018 12:15:41 dea3a5ebe148: Layer already exists build 23-Mar-2018 12:15:41 ea629ed98c08: Layer already exists build 23-Mar-2018 12:15:41 db584c622b50: Layer already exists build 23-Mar-2018 12:15:41 52a7ea2bb533: Layer already exists build 23-Mar-2018 12:15:41 52f389ea437e: Layer already exists build 23-Mar-2018 12:15:41 88888b9b1b5b: Layer already exists build 23-Mar-2018 12:15:41 a94e0d5a7c40: Layer already exists build 23-Mar-2018 12:15:42 latest: digest: sha256:bf89a958a0b51033a9f02163851b46995a3aa01b59e1756ec36bfc43e09ccc8f size: 3243 build 23-Mar-2018 12:15:42 Untagged: 30242:latest simple 23-Mar-2018 12:15:42 Finished task 'docker build' with result: Success simple 23-Mar-2018 12:15:42 Running post build plugin 'Docker Container Cleanup' simple 23-Mar-2018 12:15:42 Running post build plugin 'NCover Results Collector' simple 23-Mar-2018 12:15:42 Running post build plugin 'Clover Results Collector' simple 23-Mar-2018 12:15:42 Running post build plugin 'npm Cache Cleanup' simple 23-Mar-2018 12:15:42 Running post build plugin 'Artifact Copier' simple 23-Mar-2018 12:15:42 Finalising the build... simple 23-Mar-2018 12:15:42 Stopping timer. simple 23-Mar-2018 12:15:42 Build CATS-EXDBP-JOB1-32 completed. simple 23-Mar-2018 12:15:42 Running on server: post build plugin 'NCover Results Collector' simple 23-Mar-2018 12:15:42 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 23-Mar-2018 12:15:42 Running on server: post build plugin 'Clover Delta Calculator' simple 23-Mar-2018 12:15:42 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 23-Mar-2018 12:15:42 All post build plugins have finished simple 23-Mar-2018 12:15:42 Generating build results summary... simple 23-Mar-2018 12:15:42 Saving build results to disk... simple 23-Mar-2018 12:15:42 Logging substituted variables... simple 23-Mar-2018 12:15:42 Indexing build results... simple 23-Mar-2018 12:15:42 Finished building CATS-EXDBP-JOB1-32.