simple 18-Apr-2018 17:14:13 Build Clowder - extractors-dbpedia - Default Job #34 (CATS-EXDBP-JOB1-34) started building on agent buildserver-3.os.ncsa.edu simple 18-Apr-2018 17:14:13 Remote agent on host buildserver-3.os.ncsa.edu simple 18-Apr-2018 17:14:13 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1 simple 18-Apr-2018 17:14:13 Executing build Clowder - extractors-dbpedia - Default Job #34 (CATS-EXDBP-JOB1-34) simple 18-Apr-2018 17:14:13 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 18-Apr-2018 17:14:13 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1 simple 18-Apr-2018 17:14:13 Updating source code to revision: 41c21decd56c8a967bf1fdb5d4d284f6b3b0de41 simple 18-Apr-2018 17:14:13 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1/.git'. simple 18-Apr-2018 17:14:13 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1/.git/ simple 18-Apr-2018 17:14:13 Fetching 'refs/heads/master' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-dbpedia.git'. Will try to do a shallow fetch. simple 18-Apr-2018 17:14:13 Warning: Permanently added '[127.0.0.1]:36519' (RSA) to the list of known hosts. simple 18-Apr-2018 17:14:13 From ssh://127.0.0.1:36519/cats/extractors-dbpedia simple 18-Apr-2018 17:14:13 * [new branch] master -> master simple 18-Apr-2018 17:14:13 * [new tag] browndog_v0.2.0 -> browndog_v0.2.0 simple 18-Apr-2018 17:14:13 * [new tag] browndog_v0.3.0 -> browndog_v0.3.0 simple 18-Apr-2018 17:14:13 Checking out revision 41c21decd56c8a967bf1fdb5d4d284f6b3b0de41. simple 18-Apr-2018 17:14:13 Already on 'master' simple 18-Apr-2018 17:14:13 Updated source code to revision: 41c21decd56c8a967bf1fdb5d4d284f6b3b0de41 simple 18-Apr-2018 17:14:13 Finished task 'Checkout Default Repository' with result: Success simple 18-Apr-2018 17:14:13 Running pre-build action: VCS Version Collector simple 18-Apr-2018 17:14:13 Starting task 'docker build' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 18-Apr-2018 17:14:13 Beginning to execute external process for build 'Clowder - extractors-dbpedia - Default Job #34 (CATS-EXDBP-JOB1-34)'\n ... running command line: \n/bin/sh docker.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=master\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_dependency_parent_0=CATS-PYC2-70\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_dependency_parent_total=1\nbamboo_planRepository_1_branchDisplayName=master\nbamboo_repository_revision_number=41c21decd56c8a967bf1fdb5d4d284f6b3b0de41\nbamboo_repository_120946696_revision_number=41c21decd56c8a967bf1fdb5d4d284f6b3b0de41\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-EXDBP-JOB1-34\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1\nbamboo_planRepository_1_name=extractors-dbpedia\nbamboo_buildKey=CATS-EXDBP-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=extractors-dbpedia\nbamboo_planRepository_name=extractors-dbpedia\nbamboo_buildNumber=34\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-EXDBP-JOB1-34\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-dbpedia.git\nbamboo_agentId=143032321\nbamboo_planName=Clowder - extractors-dbpedia\nbamboo_shortPlanKey=EXDBP\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_shortJobKey=JOB1\nbamboo_planRepository_revision=41c21decd56c8a967bf1fdb5d4d284f6b3b0de41\nbamboo_buildTimeStamp=2018-04-18T16:45:42.806-05:00\nbamboo_repository_previous_revision_number=41c21decd56c8a967bf1fdb5d4d284f6b3b0de41\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_planRepository_previousRevision=41c21decd56c8a967bf1fdb5d4d284f6b3b0de41\nbamboo_repository_git_branch=master\nbamboo_buildResultKey=CATS-EXDBP-JOB1-34\nbamboo_repository_branch_name=master\nbamboo_buildPlanName=Clowder - extractors-dbpedia - Default Job\nbamboo_planRepository_1_revision=41c21decd56c8a967bf1fdb5d4d284f6b3b0de41\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=extractors-dbpedia\nbamboo_repository_120946696_previous_revision_number=41c21decd56c8a967bf1fdb5d4d284f6b3b0de41\nbamboo_repository_120946696_branch_name=master\nbamboo_buildFailed=false\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_repository_120946696_git_username=\nbamboo_planRepository_branch=master\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_repository_120946696_git_branch=master\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=41c21decd56c8a967bf1fdb5d4d284f6b3b0de41\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_planRepository_branchDisplayName=master\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=master\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_repository_120946696_name=extractors-dbpedia\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-120750095\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-dbpedia.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1\nbamboo_planKey=CATS-EXDBP\nbamboo_repository_120946696_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-dbpedia.git\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-dbpedia.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_1_branchName=master\n build 18-Apr-2018 17:14:13 Sending build context to Docker daemon 163.3kB build 18-Apr-2018 17:14:13 build 18-Apr-2018 17:14:13 Step 1/13 : FROM clowder/pyclowder:2 build 18-Apr-2018 17:14:14 2: Pulling from clowder/pyclowder build 18-Apr-2018 17:14:14 Digest: sha256:c8992b4754c3fc34ce9c72ef233474f8f87c5b2d3eef9ab4befb55f702ad03f8 build 18-Apr-2018 17:14:14 Status: Image is up to date for clowder/pyclowder:2 build 18-Apr-2018 17:14:14 ---> b0d3e6812f6a build 18-Apr-2018 17:14:14 Step 2/13 : MAINTAINER Luigi Marigni build 18-Apr-2018 17:14:14 ---> Running in c5edb2f23e88 build 18-Apr-2018 17:14:14 Removing intermediate container c5edb2f23e88 build 18-Apr-2018 17:14:14 ---> 82967cf56a07 build 18-Apr-2018 17:14:14 Step 3/13 : COPY requirements.txt /home/clowder/ build 18-Apr-2018 17:14:15 ---> 86c35938ddde build 18-Apr-2018 17:14:15 Step 4/13 : USER root build 18-Apr-2018 17:14:15 ---> Running in 25ee9b7ea86a build 18-Apr-2018 17:14:15 Removing intermediate container 25ee9b7ea86a build 18-Apr-2018 17:14:15 ---> 7f97dfe5117d build 18-Apr-2018 17:14:15 Step 5/13 : RUN apt-get update && apt-get -y install python-dev python-numpy gcc && pip install -r /home/clowder/requirements.txt build 18-Apr-2018 17:14:16 ---> Running in 8c9c6aab16d1 build 18-Apr-2018 17:14:17 Get:1 http://security.ubuntu.com/ubuntu xenial-security InRelease [102 kB] build 18-Apr-2018 17:14:17 Get:2 http://archive.ubuntu.com/ubuntu xenial InRelease [247 kB] build 18-Apr-2018 17:14:17 Get:3 http://security.ubuntu.com/ubuntu xenial-security/universe Sources [79.0 kB] build 18-Apr-2018 17:14:18 Get:4 http://archive.ubuntu.com/ubuntu xenial-updates InRelease [102 kB] build 18-Apr-2018 17:14:18 Get:5 http://security.ubuntu.com/ubuntu xenial-security/main amd64 Packages [602 kB] build 18-Apr-2018 17:14:18 Get:6 http://archive.ubuntu.com/ubuntu xenial-backports InRelease [102 kB] build 18-Apr-2018 17:14:18 Get:7 http://archive.ubuntu.com/ubuntu xenial/universe Sources [9802 kB] build 18-Apr-2018 17:14:18 Get:8 http://security.ubuntu.com/ubuntu xenial-security/restricted amd64 Packages [12.7 kB] build 18-Apr-2018 17:14:18 Get:9 http://security.ubuntu.com/ubuntu xenial-security/universe amd64 Packages [431 kB] build 18-Apr-2018 17:14:18 Get:10 http://security.ubuntu.com/ubuntu xenial-security/multiverse amd64 Packages [3489 B] build 18-Apr-2018 17:14:18 Get:11 http://archive.ubuntu.com/ubuntu xenial/main amd64 Packages [1558 kB] build 18-Apr-2018 17:14:18 Get:12 http://archive.ubuntu.com/ubuntu xenial/restricted amd64 Packages [14.1 kB] build 18-Apr-2018 17:14:18 Get:13 http://archive.ubuntu.com/ubuntu xenial/universe amd64 Packages [9827 kB] build 18-Apr-2018 17:14:19 Get:14 http://archive.ubuntu.com/ubuntu xenial/multiverse amd64 Packages [176 kB] build 18-Apr-2018 17:14:19 Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/universe Sources [253 kB] build 18-Apr-2018 17:14:19 Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 Packages [979 kB] build 18-Apr-2018 17:14:19 Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/restricted amd64 Packages [13.1 kB] build 18-Apr-2018 17:14:19 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 Packages [800 kB] build 18-Apr-2018 17:14:19 Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/multiverse amd64 Packages [18.5 kB] build 18-Apr-2018 17:14:19 Get:20 http://archive.ubuntu.com/ubuntu xenial-backports/main amd64 Packages [5153 B] build 18-Apr-2018 17:14:19 Get:21 http://archive.ubuntu.com/ubuntu xenial-backports/universe amd64 Packages [7734 B] build 18-Apr-2018 17:14:20 Fetched 25.1 MB in 3s (7663 kB/s) build 18-Apr-2018 17:14:21 Reading package lists... build 18-Apr-2018 17:14:22 Reading package lists... build 18-Apr-2018 17:14:22 Building dependency tree... build 18-Apr-2018 17:14:22 Reading state information... build 18-Apr-2018 17:14:22 The following additional packages will be installed: build 18-Apr-2018 17:14:22 binutils cpp cpp-5 gcc-5 libasan2 libatomic1 libblas-common libblas3 build 18-Apr-2018 17:14:22 libc-dev-bin libc6-dev libcc1-0 libcilkrts5 libexpat1-dev libgcc-5-dev build 18-Apr-2018 17:14:22 libgfortran3 libgmp10 libgomp1 libisl15 libitm1 liblapack3 liblsan0 libmpc3 build 18-Apr-2018 17:14:22 libmpfr4 libmpx0 libpython-dev libpython2.7 libpython2.7-dev libquadmath0 build 18-Apr-2018 17:14:22 libtsan0 libubsan0 linux-libc-dev manpages manpages-dev python2.7-dev build 18-Apr-2018 17:14:22 Suggested packages: build 18-Apr-2018 17:14:22 binutils-doc cpp-doc gcc-5-locales gcc-multilib make autoconf automake build 18-Apr-2018 17:14:22 libtool flex bison gdb gcc-doc gcc-5-multilib gcc-5-doc libgcc1-dbg build 18-Apr-2018 17:14:22 libgomp1-dbg libitm1-dbg libatomic1-dbg libasan2-dbg liblsan0-dbg build 18-Apr-2018 17:14:22 libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx0-dbg libquadmath0-dbg build 18-Apr-2018 17:14:22 glibc-doc man-browser gfortran python-nose python-numpy-dbg python-numpy-doc build 18-Apr-2018 17:14:22 The following NEW packages will be installed: build 18-Apr-2018 17:14:22 binutils cpp cpp-5 gcc gcc-5 libasan2 libatomic1 libblas-common libblas3 build 18-Apr-2018 17:14:22 libc-dev-bin libc6-dev libcc1-0 libcilkrts5 libexpat1-dev libgcc-5-dev build 18-Apr-2018 17:14:22 libgfortran3 libgmp10 libgomp1 libisl15 libitm1 liblapack3 liblsan0 libmpc3 build 18-Apr-2018 17:14:22 libmpfr4 libmpx0 libpython-dev libpython2.7 libpython2.7-dev libquadmath0 build 18-Apr-2018 17:14:22 libtsan0 libubsan0 linux-libc-dev manpages manpages-dev python-dev build 18-Apr-2018 17:14:22 python-numpy python2.7-dev build 18-Apr-2018 17:14:22 0 upgraded, 37 newly installed, 0 to remove and 14 not upgraded. build 18-Apr-2018 17:14:22 Need to get 62.5 MB of archives. build 18-Apr-2018 17:14:22 After this operation, 166 MB of additional disk space will be used. build 18-Apr-2018 17:14:22 Get:1 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgmp10 amd64 2:6.1.0+dfsg-2 [240 kB] build 18-Apr-2018 17:14:23 Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpfr4 amd64 3.1.4-1 [191 kB] build 18-Apr-2018 17:14:23 Get:3 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpc3 amd64 1.0.3-1 [39.7 kB] build 18-Apr-2018 17:14:23 Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 manpages all 4.04-2 [1087 kB] build 18-Apr-2018 17:14:23 Get:5 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 binutils amd64 2.26.1-1ubuntu1~16.04.6 [2311 kB] build 18-Apr-2018 17:14:23 Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libisl15 amd64 0.16.1-1 [524 kB] build 18-Apr-2018 17:14:23 Get:7 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 cpp-5 amd64 5.4.0-6ubuntu1~16.04.9 [7685 kB] build 18-Apr-2018 17:14:24 Get:8 http://archive.ubuntu.com/ubuntu xenial/main amd64 cpp amd64 4:5.3.1-1ubuntu1 [27.7 kB] build 18-Apr-2018 17:14:24 Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcc1-0 amd64 5.4.0-6ubuntu1~16.04.9 [38.8 kB] build 18-Apr-2018 17:14:24 Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgomp1 amd64 5.4.0-6ubuntu1~16.04.9 [55.0 kB] build 18-Apr-2018 17:14:24 Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libitm1 amd64 5.4.0-6ubuntu1~16.04.9 [27.4 kB] build 18-Apr-2018 17:14:24 Get:12 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libatomic1 amd64 5.4.0-6ubuntu1~16.04.9 [8882 B] build 18-Apr-2018 17:14:24 Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasan2 amd64 5.4.0-6ubuntu1~16.04.9 [264 kB] build 18-Apr-2018 17:14:24 Get:14 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 liblsan0 amd64 5.4.0-6ubuntu1~16.04.9 [105 kB] build 18-Apr-2018 17:14:24 Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtsan0 amd64 5.4.0-6ubuntu1~16.04.9 [244 kB] build 18-Apr-2018 17:14:24 Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libubsan0 amd64 5.4.0-6ubuntu1~16.04.9 [95.2 kB] build 18-Apr-2018 17:14:24 Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcilkrts5 amd64 5.4.0-6ubuntu1~16.04.9 [40.1 kB] build 18-Apr-2018 17:14:24 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmpx0 amd64 5.4.0-6ubuntu1~16.04.9 [9774 B] build 18-Apr-2018 17:14:24 Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libquadmath0 amd64 5.4.0-6ubuntu1~16.04.9 [131 kB] build 18-Apr-2018 17:14:24 Get:20 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgcc-5-dev amd64 5.4.0-6ubuntu1~16.04.9 [2242 kB] build 18-Apr-2018 17:14:24 Get:21 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gcc-5 amd64 5.4.0-6ubuntu1~16.04.9 [8650 kB] build 18-Apr-2018 17:14:24 Get:22 http://archive.ubuntu.com/ubuntu xenial/main amd64 gcc amd64 4:5.3.1-1ubuntu1 [5244 B] build 18-Apr-2018 17:14:24 Get:23 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas-common amd64 3.6.0-2ubuntu2 [5342 B] build 18-Apr-2018 17:14:24 Get:24 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas3 amd64 3.6.0-2ubuntu2 [147 kB] build 18-Apr-2018 17:14:24 Get:25 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc-dev-bin amd64 2.23-0ubuntu10 [68.7 kB] build 18-Apr-2018 17:14:24 Get:26 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 linux-libc-dev amd64 4.4.0-119.143 [845 kB] build 18-Apr-2018 17:14:24 Get:27 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc6-dev amd64 2.23-0ubuntu10 [2079 kB] build 18-Apr-2018 17:14:24 Get:28 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libexpat1-dev amd64 2.1.0-7ubuntu0.16.04.3 [115 kB] build 18-Apr-2018 17:14:24 Get:29 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran3 amd64 5.4.0-6ubuntu1~16.04.9 [260 kB] build 18-Apr-2018 17:14:24 Get:30 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblapack3 amd64 3.6.0-2ubuntu2 [1938 kB] build 18-Apr-2018 17:14:24 Get:31 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7 amd64 2.7.12-1ubuntu0~16.04.3 [1070 kB] build 18-Apr-2018 17:14:24 Get:32 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-dev amd64 2.7.12-1ubuntu0~16.04.3 [27.8 MB] build 18-Apr-2018 17:14:26 Get:33 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython-dev amd64 2.7.12-1~16.04 [7840 B] build 18-Apr-2018 17:14:26 Get:34 http://archive.ubuntu.com/ubuntu xenial/main amd64 manpages-dev all 4.04-2 [2048 kB] build 18-Apr-2018 17:14:26 Get:35 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7-dev amd64 2.7.12-1ubuntu0~16.04.3 [276 kB] build 18-Apr-2018 17:14:26 Get:36 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-dev amd64 2.7.12-1~16.04 [1186 B] build 18-Apr-2018 17:14:26 Get:37 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-numpy amd64 1:1.11.0-1ubuntu1 [1763 kB] build 18-Apr-2018 17:14:26 debconf: delaying package configuration, since apt-utils is not installed build 18-Apr-2018 17:14:26 Fetched 62.5 MB in 3s (17.4 MB/s) build 18-Apr-2018 17:14:27 Selecting previously unselected package libgmp10:amd64. build 18-Apr-2018 17:14:27 (Reading database ... build 18-Apr-2018 17:14:27 (Reading database ... 5% build 18-Apr-2018 17:14:27 (Reading database ... 10% build 18-Apr-2018 17:14:27 (Reading database ... 15% build 18-Apr-2018 17:14:27 (Reading database ... 20% build 18-Apr-2018 17:14:27 (Reading database ... 25% build 18-Apr-2018 17:14:27 (Reading database ... 30% build 18-Apr-2018 17:14:27 (Reading database ... 35% build 18-Apr-2018 17:14:27 (Reading database ... 40% build 18-Apr-2018 17:14:27 (Reading database ... 45% build 18-Apr-2018 17:14:27 (Reading database ... 50% build 18-Apr-2018 17:14:27 (Reading database ... 55% build 18-Apr-2018 17:14:27 (Reading database ... 60% build 18-Apr-2018 17:14:27 (Reading database ... 65% build 18-Apr-2018 17:14:27 (Reading database ... 70% build 18-Apr-2018 17:14:27 (Reading database ... 75% build 18-Apr-2018 17:14:27 (Reading database ... 80% build 18-Apr-2018 17:14:27 (Reading database ... 85% build 18-Apr-2018 17:14:27 (Reading database ... 90% build 18-Apr-2018 17:14:27 (Reading database ... 95% build 18-Apr-2018 17:14:27 (Reading database ... 100% build 18-Apr-2018 17:14:27 (Reading database ... 6075 files and directories currently installed.) build 18-Apr-2018 17:14:27 Preparing to unpack .../libgmp10_2%3a6.1.0+dfsg-2_amd64.deb ... build 18-Apr-2018 17:14:28 Unpacking libgmp10:amd64 (2:6.1.0+dfsg-2) ... build 18-Apr-2018 17:14:29 Selecting previously unselected package libmpfr4:amd64. build 18-Apr-2018 17:14:29 Preparing to unpack .../libmpfr4_3.1.4-1_amd64.deb ... build 18-Apr-2018 17:14:29 Unpacking libmpfr4:amd64 (3.1.4-1) ... build 18-Apr-2018 17:14:30 Selecting previously unselected package libmpc3:amd64. build 18-Apr-2018 17:14:30 Preparing to unpack .../libmpc3_1.0.3-1_amd64.deb ... build 18-Apr-2018 17:14:30 Unpacking libmpc3:amd64 (1.0.3-1) ... build 18-Apr-2018 17:14:31 Selecting previously unselected package manpages. build 18-Apr-2018 17:14:31 Preparing to unpack .../manpages_4.04-2_all.deb ... build 18-Apr-2018 17:14:31 Unpacking manpages (4.04-2) ... build 18-Apr-2018 17:14:31 Selecting previously unselected package binutils. build 18-Apr-2018 17:14:31 Preparing to unpack .../binutils_2.26.1-1ubuntu1~16.04.6_amd64.deb ... build 18-Apr-2018 17:14:31 Unpacking binutils (2.26.1-1ubuntu1~16.04.6) ... build 18-Apr-2018 17:14:33 Selecting previously unselected package libisl15:amd64. build 18-Apr-2018 17:14:33 Preparing to unpack .../libisl15_0.16.1-1_amd64.deb ... build 18-Apr-2018 17:14:34 Unpacking libisl15:amd64 (0.16.1-1) ... build 18-Apr-2018 17:14:35 Selecting previously unselected package cpp-5. build 18-Apr-2018 17:14:35 Preparing to unpack .../cpp-5_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 18-Apr-2018 17:14:35 Unpacking cpp-5 (5.4.0-6ubuntu1~16.04.9) ... build 18-Apr-2018 17:14:36 Selecting previously unselected package cpp. build 18-Apr-2018 17:14:36 Preparing to unpack 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package libubsan0:amd64. build 18-Apr-2018 17:14:44 Preparing to unpack .../libubsan0_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 18-Apr-2018 17:14:44 Unpacking libubsan0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 18-Apr-2018 17:14:44 Selecting previously unselected package libcilkrts5:amd64. build 18-Apr-2018 17:14:44 Preparing to unpack .../libcilkrts5_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 18-Apr-2018 17:14:44 Unpacking libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 18-Apr-2018 17:14:45 Selecting previously unselected package libmpx0:amd64. build 18-Apr-2018 17:14:45 Preparing to unpack .../libmpx0_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 18-Apr-2018 17:14:45 Unpacking libmpx0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 18-Apr-2018 17:14:46 Selecting previously unselected package libquadmath0:amd64. build 18-Apr-2018 17:14:46 Preparing to unpack .../libquadmath0_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 18-Apr-2018 17:14:46 Unpacking libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 18-Apr-2018 17:14:46 Selecting previously unselected package libgcc-5-dev:amd64. build 18-Apr-2018 17:14:46 Preparing to unpack .../libgcc-5-dev_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 18-Apr-2018 17:14:46 Unpacking libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 18-Apr-2018 17:14:47 Selecting previously unselected package gcc-5. build 18-Apr-2018 17:14:47 Preparing to unpack .../gcc-5_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 18-Apr-2018 17:14:47 Unpacking gcc-5 (5.4.0-6ubuntu1~16.04.9) ... build 18-Apr-2018 17:14:49 Selecting previously unselected package gcc. build 18-Apr-2018 17:14:49 Preparing to unpack .../gcc_4%3a5.3.1-1ubuntu1_amd64.deb ... build 18-Apr-2018 17:14:49 Unpacking gcc (4:5.3.1-1ubuntu1) ... build 18-Apr-2018 17:14:49 Selecting previously unselected package libblas-common. build 18-Apr-2018 17:14:49 Preparing to unpack .../libblas-common_3.6.0-2ubuntu2_amd64.deb ... build 18-Apr-2018 17:14:50 Unpacking libblas-common (3.6.0-2ubuntu2) ... build 18-Apr-2018 17:14:50 Selecting previously unselected package libblas3. build 18-Apr-2018 17:14:50 Preparing to unpack .../libblas3_3.6.0-2ubuntu2_amd64.deb ... build 18-Apr-2018 17:14:50 Unpacking libblas3 (3.6.0-2ubuntu2) ... build 18-Apr-2018 17:14:52 Selecting previously unselected package libc-dev-bin. build 18-Apr-2018 17:14:52 Preparing to unpack .../libc-dev-bin_2.23-0ubuntu10_amd64.deb ... build 18-Apr-2018 17:14:52 Unpacking libc-dev-bin (2.23-0ubuntu10) ... build 18-Apr-2018 17:14:52 Selecting previously unselected package linux-libc-dev:amd64. build 18-Apr-2018 17:14:52 Preparing to unpack .../linux-libc-dev_4.4.0-119.143_amd64.deb ... build 18-Apr-2018 17:14:52 Unpacking linux-libc-dev:amd64 (4.4.0-119.143) ... build 18-Apr-2018 17:14:54 Selecting previously unselected package libc6-dev:amd64. build 18-Apr-2018 17:14:54 Preparing to unpack .../libc6-dev_2.23-0ubuntu10_amd64.deb ... build 18-Apr-2018 17:14:54 Unpacking libc6-dev:amd64 (2.23-0ubuntu10) ... build 18-Apr-2018 17:14:55 Selecting previously unselected package libexpat1-dev:amd64. build 18-Apr-2018 17:14:55 Preparing to unpack .../libexpat1-dev_2.1.0-7ubuntu0.16.04.3_amd64.deb ... build 18-Apr-2018 17:14:55 Unpacking libexpat1-dev:amd64 (2.1.0-7ubuntu0.16.04.3) ... build 18-Apr-2018 17:14:55 Selecting previously unselected package libgfortran3:amd64. build 18-Apr-2018 17:14:55 Preparing to unpack .../libgfortran3_5.4.0-6ubuntu1~16.04.9_amd64.deb ... build 18-Apr-2018 17:14:55 Unpacking libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 18-Apr-2018 17:14:56 Selecting previously unselected package liblapack3. build 18-Apr-2018 17:14:56 Preparing to unpack .../liblapack3_3.6.0-2ubuntu2_amd64.deb ... build 18-Apr-2018 17:14:56 Unpacking liblapack3 (3.6.0-2ubuntu2) ... build 18-Apr-2018 17:14:57 Selecting previously unselected package libpython2.7:amd64. build 18-Apr-2018 17:14:57 Preparing to unpack .../libpython2.7_2.7.12-1ubuntu0~16.04.3_amd64.deb ... build 18-Apr-2018 17:14:57 Unpacking libpython2.7:amd64 (2.7.12-1ubuntu0~16.04.3) ... build 18-Apr-2018 17:14:58 Selecting previously unselected package libpython2.7-dev:amd64. build 18-Apr-2018 17:14:58 Preparing to unpack .../libpython2.7-dev_2.7.12-1ubuntu0~16.04.3_amd64.deb ... build 18-Apr-2018 17:14:58 Unpacking libpython2.7-dev:amd64 (2.7.12-1ubuntu0~16.04.3) ... build 18-Apr-2018 17:15:01 Selecting previously unselected package libpython-dev:amd64. build 18-Apr-2018 17:15:01 Preparing to unpack .../libpython-dev_2.7.12-1~16.04_amd64.deb ... build 18-Apr-2018 17:15:02 Unpacking libpython-dev:amd64 (2.7.12-1~16.04) ... build 18-Apr-2018 17:15:02 Selecting previously unselected package manpages-dev. build 18-Apr-2018 17:15:02 Preparing to unpack .../manpages-dev_4.04-2_all.deb ... build 18-Apr-2018 17:15:02 Unpacking manpages-dev (4.04-2) ... build 18-Apr-2018 17:15:04 Selecting previously unselected package python2.7-dev. build 18-Apr-2018 17:15:04 Preparing to unpack .../python2.7-dev_2.7.12-1ubuntu0~16.04.3_amd64.deb ... build 18-Apr-2018 17:15:04 Unpacking python2.7-dev (2.7.12-1ubuntu0~16.04.3) ... build 18-Apr-2018 17:15:05 Selecting previously unselected package python-dev. build 18-Apr-2018 17:15:05 Preparing to unpack .../python-dev_2.7.12-1~16.04_amd64.deb ... build 18-Apr-2018 17:15:05 Unpacking python-dev (2.7.12-1~16.04) ... build 18-Apr-2018 17:15:05 Selecting previously unselected package python-numpy. build 18-Apr-2018 17:15:05 Preparing to unpack .../python-numpy_1%3a1.11.0-1ubuntu1_amd64.deb ... build 18-Apr-2018 17:15:05 Unpacking python-numpy (1:1.11.0-1ubuntu1) ... build 18-Apr-2018 17:15:06 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 18-Apr-2018 17:15:06 Setting up libgmp10:amd64 (2:6.1.0+dfsg-2) ... build 18-Apr-2018 17:15:07 Setting up libmpfr4:amd64 (3.1.4-1) ... build 18-Apr-2018 17:15:07 Setting up libmpc3:amd64 (1.0.3-1) ... build 18-Apr-2018 17:15:07 Setting up manpages (4.04-2) ... build 18-Apr-2018 17:15:07 Setting up binutils (2.26.1-1ubuntu1~16.04.6) ... build 18-Apr-2018 17:15:08 Setting up libisl15:amd64 (0.16.1-1) ... build 18-Apr-2018 17:15:08 Setting up cpp-5 (5.4.0-6ubuntu1~16.04.9) ... build 18-Apr-2018 17:15:08 Setting up cpp (4:5.3.1-1ubuntu1) ... build 18-Apr-2018 17:15:09 Setting up libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 18-Apr-2018 17:15:09 Setting up libgomp1:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 18-Apr-2018 17:15:09 Setting up libitm1:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 18-Apr-2018 17:15:09 Setting up libatomic1:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 18-Apr-2018 17:15:09 Setting up libasan2:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 18-Apr-2018 17:15:10 Setting up liblsan0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 18-Apr-2018 17:15:10 Setting up libtsan0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 18-Apr-2018 17:15:10 Setting up libubsan0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 18-Apr-2018 17:15:10 Setting up libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 18-Apr-2018 17:15:11 Setting up libmpx0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 18-Apr-2018 17:15:11 Setting up libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 18-Apr-2018 17:15:11 Setting up libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 18-Apr-2018 17:15:11 Setting up gcc-5 (5.4.0-6ubuntu1~16.04.9) ... build 18-Apr-2018 17:15:12 Setting up gcc (4:5.3.1-1ubuntu1) ... build 18-Apr-2018 17:15:12 Setting up libblas-common (3.6.0-2ubuntu2) ... build 18-Apr-2018 17:15:12 Setting up libblas3 (3.6.0-2ubuntu2) ... build 18-Apr-2018 17:15:12 update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode build 18-Apr-2018 17:15:13 Setting up libc-dev-bin (2.23-0ubuntu10) ... build 18-Apr-2018 17:15:13 Setting up linux-libc-dev:amd64 (4.4.0-119.143) ... build 18-Apr-2018 17:15:13 Setting up libc6-dev:amd64 (2.23-0ubuntu10) ... build 18-Apr-2018 17:15:14 Setting up libexpat1-dev:amd64 (2.1.0-7ubuntu0.16.04.3) ... build 18-Apr-2018 17:15:14 Setting up libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.9) ... build 18-Apr-2018 17:15:15 Setting up liblapack3 (3.6.0-2ubuntu2) ... build 18-Apr-2018 17:15:15 update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode build 18-Apr-2018 17:15:15 Setting up libpython2.7:amd64 (2.7.12-1ubuntu0~16.04.3) ... build 18-Apr-2018 17:15:15 Setting up libpython2.7-dev:amd64 (2.7.12-1ubuntu0~16.04.3) ... build 18-Apr-2018 17:15:15 Setting up libpython-dev:amd64 (2.7.12-1~16.04) ... build 18-Apr-2018 17:15:16 Setting up manpages-dev (4.04-2) ... build 18-Apr-2018 17:15:16 Setting up python2.7-dev (2.7.12-1ubuntu0~16.04.3) ... build 18-Apr-2018 17:15:16 Setting up python-dev (2.7.12-1~16.04) ... build 18-Apr-2018 17:15:16 Setting up python-numpy (1:1.11.0-1ubuntu1) ... build 18-Apr-2018 17:15:19 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 18-Apr-2018 17:15:20 Collecting Flask==0.10.1 (from -r /home/clowder/requirements.txt (line 1)) build 18-Apr-2018 17:15:20 Downloading https://files.pythonhosted.org/packages/db/9c/149ba60c47d107f85fe52564133348458f093dd5e6b57a5b60ab9ac517bb/Flask-0.10.1.tar.gz (544kB) build 18-Apr-2018 17:15:21 Collecting html5lib==0.99999 (from -r /home/clowder/requirements.txt (line 2)) build 18-Apr-2018 17:15:21 Downloading https://files.pythonhosted.org/packages/0d/0f/6e7a4171c150e4c52cff10184697a63dd9eaeae5c7b7f5023ef6b16aaf59/html5lib-0.99999.tar.gz (887kB) build 18-Apr-2018 17:15:21 Collecting isodate==0.5.1 (from -r /home/clowder/requirements.txt (line 3)) build 18-Apr-2018 17:15:21 Downloading https://files.pythonhosted.org/packages/4a/98/07f5bb685219005c3a5788ebe492561c44a75d6b690446667ab508ef070d/isodate-0.5.1.tar.gz build 18-Apr-2018 17:15:21 Collecting itsdangerous==0.24 (from -r /home/clowder/requirements.txt (line 4)) build 18-Apr-2018 17:15:21 Downloading https://files.pythonhosted.org/packages/dc/b4/a60bcdba945c00f6d608d8975131ab3f25b22f2bcfe1dab221165194b2d4/itsdangerous-0.24.tar.gz (46kB) build 18-Apr-2018 17:15:22 Collecting Jinja2==2.7.3 (from -r /home/clowder/requirements.txt (line 5)) build 18-Apr-2018 17:15:22 Downloading https://files.pythonhosted.org/packages/b0/73/eab0bca302d6d6a0b5c402f47ad1760dc9cb2dd14bbc1873ad48db258e4d/Jinja2-2.7.3.tar.gz (378kB) build 18-Apr-2018 17:15:22 Collecting MarkupSafe==0.23 (from -r /home/clowder/requirements.txt (line 6)) build 18-Apr-2018 17:15:22 Downloading https://files.pythonhosted.org/packages/c0/41/bae1254e0396c0cc8cf1751cb7d9afc90a602353695af5952530482c963f/MarkupSafe-0.23.tar.gz build 18-Apr-2018 17:15:22 Collecting nltk==3.0.3 (from -r /home/clowder/requirements.txt (line 7)) build 18-Apr-2018 17:15:22 Downloading https://files.pythonhosted.org/packages/69/3e/b5e0e0210931539a3f77e0537e2e462b929b019a723895bd69357ad20bc3/nltk-3.0.3.tar.gz (1.0MB) build 18-Apr-2018 17:15:23 Requirement 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https://files.pythonhosted.org/packages/26/ff/c71b3943bebdd9f7ceb9e137296370587eb0b33fe2eb3732ae168bc45204/requests-2.7.0-py2.py3-none-any.whl (470kB) build 18-Apr-2018 17:15:25 Collecting six==1.9.0 (from -r /home/clowder/requirements.txt (line 14)) build 18-Apr-2018 17:15:25 Downloading https://files.pythonhosted.org/packages/10/e3/a7f8eea80a9fa8358c1cd89ef489bc03675e69e54ed2982cd6f2a28d8295/six-1.9.0-py2.py3-none-any.whl build 18-Apr-2018 17:15:25 Collecting SPARQLWrapper==1.6.4 (from -r /home/clowder/requirements.txt (line 15)) build 18-Apr-2018 17:15:25 Downloading https://files.pythonhosted.org/packages/6b/07/751e164e2e5debc18eb92fbe0798a62d668af8801c8adf38b6f32bcc5eed/SPARQLWrapper-1.6.4.tar.gz build 18-Apr-2018 17:15:25 Collecting Werkzeug==0.10.4 (from -r /home/clowder/requirements.txt (line 16)) build 18-Apr-2018 17:15:25 Downloading https://files.pythonhosted.org/packages/49/0c/e33c2caec86a7926186f7d454f6a901f45f05ad90337c6972d170b9ee806/Werkzeug-0.10.4-py2.py3-none-any.whl (293kB) build 18-Apr-2018 17:15:25 Requirement already satisfied (use --upgrade to upgrade): wheel==0.24.0 in /usr/local/lib/python2.7/dist-packages (from -r /home/clowder/requirements.txt (line 17)) build 18-Apr-2018 17:15:25 Building wheels for collected packages: Flask, html5lib, isodate, itsdangerous, Jinja2, MarkupSafe, nltk, rdflib, SPARQLWrapper build 18-Apr-2018 17:15:25 Running setup.py bdist_wheel for Flask: started build 18-Apr-2018 17:15:26 Running setup.py bdist_wheel for Flask: finished with status 'done' build 18-Apr-2018 17:15:26 Stored in directory: /root/.cache/pip/wheels/e1/f2/be/1c4f307a41aad7e632f79c0242a2714ecde24b663da3519665 build 18-Apr-2018 17:15:26 Running setup.py bdist_wheel for html5lib: started build 18-Apr-2018 17:15:26 Running setup.py bdist_wheel for html5lib: finished with status 'done' build 18-Apr-2018 17:15:26 Stored in directory: /root/.cache/pip/wheels/1f/b7/d1/537b75e933aa8b8f3667435076395364922bd9f5bdd6703351 build 18-Apr-2018 17:15:26 Running setup.py bdist_wheel for isodate: started build 18-Apr-2018 17:15:26 Running setup.py bdist_wheel for isodate: finished with status 'done' build 18-Apr-2018 17:15:26 Stored in directory: /root/.cache/pip/wheels/8a/90/c6/b2244dd3fcc6e3c3b71a9a8d894f2ec4355d5fa7b0a7521a50 build 18-Apr-2018 17:15:26 Running setup.py bdist_wheel for itsdangerous: started build 18-Apr-2018 17:15:26 Running setup.py bdist_wheel for itsdangerous: finished with status 'done' build 18-Apr-2018 17:15:26 Stored in directory: /root/.cache/pip/wheels/2c/4a/61/5599631c1554768c6290b08c02c72d7317910374ca602ff1e5 build 18-Apr-2018 17:15:26 Running setup.py bdist_wheel for Jinja2: started build 18-Apr-2018 17:15:27 Running setup.py bdist_wheel for Jinja2: finished with status 'done' build 18-Apr-2018 17:15:27 Stored in directory: /root/.cache/pip/wheels/01/a3/34/1e8ce0a7bfc263c9cc7c87db665fd431105d7be00e289cd69f build 18-Apr-2018 17:15:27 Running setup.py bdist_wheel for MarkupSafe: started build 18-Apr-2018 17:15:27 Running setup.py bdist_wheel for MarkupSafe: finished with status 'done' build 18-Apr-2018 17:15:27 Stored in directory: /root/.cache/pip/wheels/28/de/65/f28b426d990edb591113e1549c8a0f09034e5958e440629306 build 18-Apr-2018 17:15:27 Running setup.py bdist_wheel for nltk: started build 18-Apr-2018 17:15:28 Running setup.py bdist_wheel for nltk: finished with status 'done' build 18-Apr-2018 17:15:28 Stored in directory: /root/.cache/pip/wheels/10/00/e1/d56a2c06bb5d7c2ee66b193d53d892e98c17721d688584e8e0 build 18-Apr-2018 17:15:28 Running setup.py bdist_wheel for rdflib: started build 18-Apr-2018 17:15:28 Running setup.py bdist_wheel for rdflib: finished with status 'done' build 18-Apr-2018 17:15:28 Stored in directory: /root/.cache/pip/wheels/6c/60/53/92d7ba6ec1d9362e1054ba7657aa89f7f7391e17014172034d build 18-Apr-2018 17:15:28 Running setup.py bdist_wheel for SPARQLWrapper: started build 18-Apr-2018 17:15:29 Running setup.py bdist_wheel for SPARQLWrapper: finished with status 'done' build 18-Apr-2018 17:15:29 Stored in directory: /root/.cache/pip/wheels/78/62/29/1fbdbccca0af33a403320e5690445679e03f8bd5e576a34cb5 build 18-Apr-2018 17:15:29 Successfully built Flask html5lib isodate itsdangerous Jinja2 MarkupSafe nltk rdflib SPARQLWrapper build 18-Apr-2018 17:15:29 Installing collected packages: Werkzeug, MarkupSafe, Jinja2, itsdangerous, Flask, six, html5lib, isodate, nltk, pyparsing, SPARQLWrapper, rdflib, requests build 18-Apr-2018 17:15:30 Found existing installation: requests 2.10.0 build 18-Apr-2018 17:15:30 Uninstalling requests-2.10.0: build 18-Apr-2018 17:15:38 Successfully uninstalled requests-2.10.0 build 18-Apr-2018 17:15:38 Successfully installed Flask-0.10.1 Jinja2-2.7.3 MarkupSafe-0.23 SPARQLWrapper-1.6.4 Werkzeug-0.10.4 html5lib-0.99999 isodate-0.5.1 itsdangerous-0.24 nltk-3.0.3 pyparsing-2.0.3 rdflib-4.2.0 requests-2.7.0 six-1.9.0 build 18-Apr-2018 17:15:38 You are using pip version 8.1.1, however version 10.0.0 is available. build 18-Apr-2018 17:15:38 You should consider upgrading via the 'pip install --upgrade pip' command. build 18-Apr-2018 17:15:43 Removing intermediate container 8c9c6aab16d1 build 18-Apr-2018 17:15:43 ---> f2f83b21cd7e build 18-Apr-2018 17:15:43 Step 6/13 : USER clowder build 18-Apr-2018 17:15:43 ---> Running in b2160044302b build 18-Apr-2018 17:15:44 Removing intermediate container b2160044302b build 18-Apr-2018 17:15:44 ---> 8ce21d574c0e build 18-Apr-2018 17:15:44 Step 7/13 : COPY namedentityrecognition.py /home/clowder/ build 18-Apr-2018 17:15:45 ---> d3079ef77712 build 18-Apr-2018 17:15:45 Step 8/13 : RUN /home/clowder/namedentityrecognition.py build 18-Apr-2018 17:15:45 ---> Running in 91d0552211fe build 18-Apr-2018 17:15:48 [nltk_data] Downloading package punkt to /home/clowder/nltk_data... build 18-Apr-2018 17:15:48 [nltk_data] Unzipping tokenizers/punkt.zip. build 18-Apr-2018 17:15:48 [nltk_data] Downloading package maxent_treebank_pos_tagger to build 18-Apr-2018 17:15:48 [nltk_data] /home/clowder/nltk_data... build 18-Apr-2018 17:15:48 [nltk_data] Unzipping taggers/maxent_treebank_pos_tagger.zip. build 18-Apr-2018 17:15:48 [] build 18-Apr-2018 17:15:48 [] build 18-Apr-2018 17:15:50 Removing intermediate container 91d0552211fe build 18-Apr-2018 17:15:50 ---> 0d4add694ed1 build 18-Apr-2018 17:15:50 Step 9/13 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.dbpedia" MAIN_SCRIPT="extractor.py" build 18-Apr-2018 17:15:50 ---> Running in 2616549bce67 build 18-Apr-2018 17:15:51 Removing intermediate container 2616549bce67 build 18-Apr-2018 17:15:51 ---> 8f02b8231408 build 18-Apr-2018 17:15:51 Step 10/13 : USER clowder build 18-Apr-2018 17:15:51 ---> Running in bbdd95e155e3 build 18-Apr-2018 17:15:52 Removing intermediate container bbdd95e155e3 build 18-Apr-2018 17:15:52 ---> 1364d7eef3fd build 18-Apr-2018 17:15:52 Step 11/13 : COPY entrypoint.sh *.py *.json /home/clowder/ build 18-Apr-2018 17:15:52 ---> 035bde78f97b build 18-Apr-2018 17:15:52 Step 12/13 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 18-Apr-2018 17:15:52 ---> Running in 5a67aaf74bdb build 18-Apr-2018 17:15:54 Removing intermediate container 5a67aaf74bdb build 18-Apr-2018 17:15:54 ---> ab7b2b7f91ec build 18-Apr-2018 17:15:54 Step 13/13 : CMD ["extractor"] build 18-Apr-2018 17:15:54 ---> Running in 7bac489b5f63 build 18-Apr-2018 17:15:55 Removing intermediate container 7bac489b5f63 build 18-Apr-2018 17:15:55 ---> d8bf54e2ba56 build 18-Apr-2018 17:15:55 Successfully built d8bf54e2ba56 build 18-Apr-2018 17:15:55 Successfully tagged 6948:latest build 18-Apr-2018 17:15:55 The push refers to repository [docker.io/clowder/extractors-dbpedia] build 18-Apr-2018 17:15:55 14c7fd64a6b3: Preparing build 18-Apr-2018 17:15:55 bab2e2ae074c: Preparing build 18-Apr-2018 17:15:55 5d51c874d939: Preparing build 18-Apr-2018 17:15:55 96e26b90699b: Preparing build 18-Apr-2018 17:15:55 ae81e77b368c: Preparing build 18-Apr-2018 17:15:55 e0c475f4b442: Preparing build 18-Apr-2018 17:15:55 10797ec3f44d: Preparing build 18-Apr-2018 17:15:55 d7b62106f45a: Preparing build 18-Apr-2018 17:15:55 7453e70c8b95: Preparing build 18-Apr-2018 17:15:55 db584c622b50: Preparing build 18-Apr-2018 17:15:55 52a7ea2bb533: Preparing build 18-Apr-2018 17:15:55 52f389ea437e: Preparing build 18-Apr-2018 17:15:55 88888b9b1b5b: Preparing build 18-Apr-2018 17:15:55 a94e0d5a7c40: Preparing build 18-Apr-2018 17:15:55 e0c475f4b442: Waiting build 18-Apr-2018 17:15:55 10797ec3f44d: Waiting build 18-Apr-2018 17:15:55 d7b62106f45a: Waiting build 18-Apr-2018 17:15:55 7453e70c8b95: Waiting build 18-Apr-2018 17:15:55 db584c622b50: Waiting build 18-Apr-2018 17:15:55 52a7ea2bb533: Waiting build 18-Apr-2018 17:15:55 52f389ea437e: Waiting build 18-Apr-2018 17:15:55 88888b9b1b5b: Waiting build 18-Apr-2018 17:15:55 a94e0d5a7c40: Waiting build 18-Apr-2018 17:15:56 ae81e77b368c: Pushed build 18-Apr-2018 17:15:57 14c7fd64a6b3: Pushed build 18-Apr-2018 17:15:57 5d51c874d939: Pushed build 18-Apr-2018 17:15:57 e0c475f4b442: Mounted from clowder/extractors-siegfried build 18-Apr-2018 17:15:58 10797ec3f44d: Mounted from clowder/extractors-siegfried build 18-Apr-2018 17:15:58 d7b62106f45a: Mounted from clowder/extractors-siegfried build 18-Apr-2018 17:15:58 7453e70c8b95: Mounted from clowder/extractors-siegfried build 18-Apr-2018 17:15:58 db584c622b50: Layer already exists build 18-Apr-2018 17:15:58 52a7ea2bb533: Layer already exists build 18-Apr-2018 17:15:59 88888b9b1b5b: Layer already exists build 18-Apr-2018 17:15:59 52f389ea437e: Layer already exists build 18-Apr-2018 17:15:59 a94e0d5a7c40: Layer already exists build 18-Apr-2018 17:16:06 bab2e2ae074c: Pushed build 18-Apr-2018 17:16:12 96e26b90699b: Pushed build 18-Apr-2018 17:16:14 browndog_v0.2.0: digest: sha256:effb8d5645c03b49ace130db2e31bc6d2df1aad5b80c143140b736172a35e17f size: 3243 build 18-Apr-2018 17:16:15 The push refers to repository [docker.io/clowder/extractors-dbpedia] build 18-Apr-2018 17:16:15 14c7fd64a6b3: Preparing build 18-Apr-2018 17:16:15 bab2e2ae074c: Preparing build 18-Apr-2018 17:16:15 5d51c874d939: Preparing build 18-Apr-2018 17:16:15 96e26b90699b: Preparing build 18-Apr-2018 17:16:15 ae81e77b368c: Preparing build 18-Apr-2018 17:16:15 e0c475f4b442: Preparing build 18-Apr-2018 17:16:15 10797ec3f44d: Preparing build 18-Apr-2018 17:16:15 d7b62106f45a: Preparing build 18-Apr-2018 17:16:15 7453e70c8b95: Preparing build 18-Apr-2018 17:16:15 db584c622b50: Preparing build 18-Apr-2018 17:16:15 52a7ea2bb533: Preparing build 18-Apr-2018 17:16:15 52f389ea437e: Preparing build 18-Apr-2018 17:16:15 10797ec3f44d: Waiting build 18-Apr-2018 17:16:15 e0c475f4b442: Waiting build 18-Apr-2018 17:16:15 db584c622b50: Waiting build 18-Apr-2018 17:16:15 d7b62106f45a: Waiting build 18-Apr-2018 17:16:15 7453e70c8b95: Waiting build 18-Apr-2018 17:16:15 52a7ea2bb533: Waiting build 18-Apr-2018 17:16:15 88888b9b1b5b: Preparing build 18-Apr-2018 17:16:15 a94e0d5a7c40: Preparing build 18-Apr-2018 17:16:15 52f389ea437e: Waiting build 18-Apr-2018 17:16:15 a94e0d5a7c40: Waiting build 18-Apr-2018 17:16:15 88888b9b1b5b: Waiting build 18-Apr-2018 17:16:15 14c7fd64a6b3: Layer already exists build 18-Apr-2018 17:16:15 5d51c874d939: Layer already exists build 18-Apr-2018 17:16:15 96e26b90699b: Layer already exists build 18-Apr-2018 17:16:15 ae81e77b368c: Layer already exists build 18-Apr-2018 17:16:15 bab2e2ae074c: Layer already exists build 18-Apr-2018 17:16:15 e0c475f4b442: Layer already exists build 18-Apr-2018 17:16:15 10797ec3f44d: Layer already exists build 18-Apr-2018 17:16:15 db584c622b50: Layer already exists build 18-Apr-2018 17:16:15 7453e70c8b95: Layer already exists build 18-Apr-2018 17:16:15 d7b62106f45a: Layer already exists build 18-Apr-2018 17:16:15 88888b9b1b5b: Layer already exists build 18-Apr-2018 17:16:15 52f389ea437e: Layer already exists build 18-Apr-2018 17:16:15 52a7ea2bb533: Layer already exists build 18-Apr-2018 17:16:15 a94e0d5a7c40: Layer already exists build 18-Apr-2018 17:16:16 browndog_v0.3.0: digest: sha256:effb8d5645c03b49ace130db2e31bc6d2df1aad5b80c143140b736172a35e17f size: 3243 build 18-Apr-2018 17:16:16 The push refers to repository [docker.io/clowder/extractors-dbpedia] build 18-Apr-2018 17:16:16 14c7fd64a6b3: Preparing build 18-Apr-2018 17:16:16 bab2e2ae074c: Preparing build 18-Apr-2018 17:16:16 5d51c874d939: Preparing build 18-Apr-2018 17:16:16 96e26b90699b: Preparing build 18-Apr-2018 17:16:16 ae81e77b368c: Preparing build 18-Apr-2018 17:16:16 e0c475f4b442: Preparing build 18-Apr-2018 17:16:16 10797ec3f44d: Preparing build 18-Apr-2018 17:16:16 d7b62106f45a: Preparing build 18-Apr-2018 17:16:16 7453e70c8b95: Preparing build 18-Apr-2018 17:16:16 db584c622b50: Preparing build 18-Apr-2018 17:16:16 52a7ea2bb533: Preparing build 18-Apr-2018 17:16:16 10797ec3f44d: Waiting build 18-Apr-2018 17:16:16 d7b62106f45a: Waiting build 18-Apr-2018 17:16:16 7453e70c8b95: Waiting build 18-Apr-2018 17:16:16 e0c475f4b442: Waiting build 18-Apr-2018 17:16:16 db584c622b50: Waiting build 18-Apr-2018 17:16:16 52f389ea437e: Preparing build 18-Apr-2018 17:16:16 88888b9b1b5b: Preparing build 18-Apr-2018 17:16:16 a94e0d5a7c40: Preparing build 18-Apr-2018 17:16:16 52a7ea2bb533: Waiting build 18-Apr-2018 17:16:16 52f389ea437e: Waiting build 18-Apr-2018 17:16:16 bab2e2ae074c: Layer already exists build 18-Apr-2018 17:16:16 ae81e77b368c: Layer already exists build 18-Apr-2018 17:16:16 96e26b90699b: Layer already exists build 18-Apr-2018 17:16:16 5d51c874d939: Layer already exists build 18-Apr-2018 17:16:17 14c7fd64a6b3: Layer already exists build 18-Apr-2018 17:16:17 e0c475f4b442: Layer already exists build 18-Apr-2018 17:16:17 10797ec3f44d: Layer already exists build 18-Apr-2018 17:16:17 d7b62106f45a: Layer already exists build 18-Apr-2018 17:16:17 7453e70c8b95: Layer already exists build 18-Apr-2018 17:16:17 db584c622b50: Layer already exists build 18-Apr-2018 17:16:17 52f389ea437e: Layer already exists build 18-Apr-2018 17:16:17 88888b9b1b5b: Layer already exists build 18-Apr-2018 17:16:17 52a7ea2bb533: Layer already exists build 18-Apr-2018 17:16:17 a94e0d5a7c40: Layer already exists build 18-Apr-2018 17:16:18 latest: digest: sha256:effb8d5645c03b49ace130db2e31bc6d2df1aad5b80c143140b736172a35e17f size: 3243 build 18-Apr-2018 17:16:18 Untagged: 6948:latest simple 18-Apr-2018 17:16:18 Finished task 'docker build' with result: Success simple 18-Apr-2018 17:16:18 Running post build plugin 'Docker Container Cleanup' simple 18-Apr-2018 17:16:18 Running post build plugin 'NCover Results Collector' simple 18-Apr-2018 17:16:18 Running post build plugin 'Clover Results Collector' simple 18-Apr-2018 17:16:18 Running post build plugin 'npm Cache Cleanup' simple 18-Apr-2018 17:16:18 Running post build plugin 'Artifact Copier' simple 18-Apr-2018 17:16:18 Finalising the build... simple 18-Apr-2018 17:16:18 Stopping timer. simple 18-Apr-2018 17:16:18 Build CATS-EXDBP-JOB1-34 completed. simple 18-Apr-2018 17:16:18 Running on server: post build plugin 'NCover Results Collector' simple 18-Apr-2018 17:16:18 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 18-Apr-2018 17:16:18 Running on server: post build plugin 'Clover Delta Calculator' simple 18-Apr-2018 17:16:18 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 18-Apr-2018 17:16:18 All post build plugins have finished simple 18-Apr-2018 17:16:18 Generating build results summary... simple 18-Apr-2018 17:16:18 Saving build results to disk... simple 18-Apr-2018 17:16:18 Logging substituted variables... simple 18-Apr-2018 17:16:18 Indexing build results... simple 18-Apr-2018 17:16:18 Finished building CATS-EXDBP-JOB1-34.