simple 03-Apr-2019 16:19:51 Build Clowder - extractors-dbpedia - Default Job #38 (CATS-EXDBP-JOB1-38) started building on agent buildserver-2.os.ncsa.edu simple 03-Apr-2019 16:19:51 Remote agent on host buildserver-2.os.ncsa.edu simple 03-Apr-2019 16:19:51 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1 simple 03-Apr-2019 16:19:51 Executing build Clowder - extractors-dbpedia - Default Job #38 (CATS-EXDBP-JOB1-38) simple 03-Apr-2019 16:19:51 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 03-Apr-2019 16:19:51 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1 simple 03-Apr-2019 16:19:51 Updating source code to revision: 41c21decd56c8a967bf1fdb5d4d284f6b3b0de41 simple 03-Apr-2019 16:19:51 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1/.git'. simple 03-Apr-2019 16:19:52 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1/.git/ simple 03-Apr-2019 16:19:52 Fetching 'refs/heads/master' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-dbpedia.git'. Will try to do a shallow fetch. simple 03-Apr-2019 16:19:52 Warning: Permanently added '[127.0.0.1]:34558' (RSA) to the list of known hosts. simple 03-Apr-2019 16:19:53 From ssh://127.0.0.1:34558/cats/extractors-dbpedia simple 03-Apr-2019 16:19:53 * [new branch] master -> master simple 03-Apr-2019 16:19:53 * [new tag] browndog_v0.2.0 -> browndog_v0.2.0 simple 03-Apr-2019 16:19:53 * [new tag] browndog_v0.3.0 -> browndog_v0.3.0 simple 03-Apr-2019 16:19:53 Checking out revision 41c21decd56c8a967bf1fdb5d4d284f6b3b0de41. simple 03-Apr-2019 16:19:53 Already on 'master' simple 03-Apr-2019 16:19:53 Updated source code to revision: 41c21decd56c8a967bf1fdb5d4d284f6b3b0de41 simple 03-Apr-2019 16:19:53 Finished task 'Checkout Default Repository' with result: Success simple 03-Apr-2019 16:19:53 Running pre-build action: VCS Version Collector simple 03-Apr-2019 16:19:53 Starting task 'docker build' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 03-Apr-2019 16:19:53 Beginning to execute external process for build 'Clowder - extractors-dbpedia - Default Job #38 (CATS-EXDBP-JOB1-38)'\n ... running command line: \n/bin/sh docker.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=master\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster\nbamboo_dependency_parent_0=CATS-PYC2-74\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_dependency_parent_total=1\nbamboo_planRepository_1_branchDisplayName=master\nbamboo_repository_revision_number=41c21decd56c8a967bf1fdb5d4d284f6b3b0de41\nbamboo_repository_120946696_revision_number=41c21decd56c8a967bf1fdb5d4d284f6b3b0de41\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-EXDBP-JOB1-38\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1\nbamboo_planRepository_1_name=extractors-dbpedia\nbamboo_buildKey=CATS-EXDBP-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=extractors-dbpedia\nbamboo_planRepository_name=extractors-dbpedia\nbamboo_buildNumber=38\nbamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-EXDBP-JOB1-38\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-dbpedia.git\nbamboo_agentId=140673028\nbamboo_planName=Clowder - 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build 03-Apr-2019 16:19:53 Sending build context to Docker daemon 163.3kB build 03-Apr-2019 16:19:53 build 03-Apr-2019 16:19:53 Step 1/13 : FROM clowder/pyclowder:2 build 03-Apr-2019 16:19:54 2: Pulling from clowder/pyclowder build 03-Apr-2019 16:19:54 Digest: sha256:72cdc5eb270c3eac83c473be08d7c2d6f31eab29118a49b374e9074e1f91614a build 03-Apr-2019 16:19:54 Status: Image is up to date for clowder/pyclowder:2 build 03-Apr-2019 16:19:54 ---> 2e7594edf0dc build 03-Apr-2019 16:19:54 Step 2/13 : MAINTAINER Luigi Marigni build 03-Apr-2019 16:19:54 ---> Running in 9953589d2473 build 03-Apr-2019 16:19:56 Removing intermediate container 9953589d2473 build 03-Apr-2019 16:19:56 ---> 52169f98c11d build 03-Apr-2019 16:19:56 Step 3/13 : COPY requirements.txt /home/clowder/ build 03-Apr-2019 16:19:57 ---> cd57d9265344 build 03-Apr-2019 16:19:57 Step 4/13 : USER root build 03-Apr-2019 16:19:57 ---> Running in 50092b7b5c4b build 03-Apr-2019 16:19:59 Removing intermediate container 50092b7b5c4b build 03-Apr-2019 16:19:59 ---> 2076d81ab258 build 03-Apr-2019 16:19:59 Step 5/13 : RUN apt-get update && apt-get -y install python-dev python-numpy gcc && pip install -r /home/clowder/requirements.txt build 03-Apr-2019 16:19:59 ---> Running in 0ce08ac73556 build 03-Apr-2019 16:20:00 Get:1 http://security.ubuntu.com/ubuntu xenial-security InRelease [109 kB] build 03-Apr-2019 16:20:01 Get:2 http://archive.ubuntu.com/ubuntu xenial InRelease [247 kB] build 03-Apr-2019 16:20:01 Get:3 http://security.ubuntu.com/ubuntu xenial-security/main amd64 Packages [815 kB] build 03-Apr-2019 16:20:01 Get:4 http://security.ubuntu.com/ubuntu xenial-security/restricted amd64 Packages [12.7 kB] build 03-Apr-2019 16:20:01 Get:5 http://security.ubuntu.com/ubuntu xenial-security/universe amd64 Packages [551 kB] build 03-Apr-2019 16:20:01 Get:6 http://security.ubuntu.com/ubuntu xenial-security/multiverse amd64 Packages [6117 B] build 03-Apr-2019 16:20:01 Get:7 http://archive.ubuntu.com/ubuntu xenial-updates InRelease [109 kB] build 03-Apr-2019 16:20:01 Get:8 http://archive.ubuntu.com/ubuntu xenial-backports InRelease [107 kB] build 03-Apr-2019 16:20:01 Get:9 http://archive.ubuntu.com/ubuntu xenial/main amd64 Packages [1558 kB] build 03-Apr-2019 16:20:02 Get:10 http://archive.ubuntu.com/ubuntu xenial/restricted amd64 Packages [14.1 kB] build 03-Apr-2019 16:20:02 Get:11 http://archive.ubuntu.com/ubuntu xenial/universe amd64 Packages [9827 kB] build 03-Apr-2019 16:20:02 Get:12 http://archive.ubuntu.com/ubuntu xenial/multiverse amd64 Packages [176 kB] build 03-Apr-2019 16:20:02 Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 Packages [1210 kB] build 03-Apr-2019 16:20:02 Get:14 http://archive.ubuntu.com/ubuntu xenial-updates/restricted amd64 Packages [13.1 kB] build 03-Apr-2019 16:20:02 Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 Packages [961 kB] build 03-Apr-2019 16:20:02 Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/multiverse amd64 Packages [19.1 kB] build 03-Apr-2019 16:20:02 Get:17 http://archive.ubuntu.com/ubuntu xenial-backports/main amd64 Packages [7942 B] build 03-Apr-2019 16:20:02 Get:18 http://archive.ubuntu.com/ubuntu xenial-backports/universe amd64 Packages [8532 B] build 03-Apr-2019 16:20:03 Fetched 15.8 MB in 2s (6398 kB/s) build 03-Apr-2019 16:20:04 Reading package lists... build 03-Apr-2019 16:20:05 Reading package lists... build 03-Apr-2019 16:20:05 Building dependency tree... build 03-Apr-2019 16:20:05 Reading state information... build 03-Apr-2019 16:20:05 The following additional packages will be installed: build 03-Apr-2019 16:20:05 binutils cpp cpp-5 gcc-5 libasan2 libatomic1 libblas-common libblas3 build 03-Apr-2019 16:20:05 libc-dev-bin libc6-dev libcc1-0 libcilkrts5 libexpat1-dev libgcc-5-dev build 03-Apr-2019 16:20:05 libgfortran3 libgmp10 libgomp1 libisl15 libitm1 liblapack3 liblsan0 libmpc3 build 03-Apr-2019 16:20:05 libmpfr4 libmpx0 libpython-dev libpython2.7 libpython2.7-dev libquadmath0 build 03-Apr-2019 16:20:05 libtsan0 libubsan0 linux-libc-dev manpages manpages-dev python2.7-dev build 03-Apr-2019 16:20:05 Suggested packages: build 03-Apr-2019 16:20:05 binutils-doc cpp-doc gcc-5-locales gcc-multilib make autoconf automake build 03-Apr-2019 16:20:05 libtool flex bison gdb gcc-doc gcc-5-multilib gcc-5-doc libgcc1-dbg build 03-Apr-2019 16:20:05 libgomp1-dbg libitm1-dbg libatomic1-dbg libasan2-dbg liblsan0-dbg build 03-Apr-2019 16:20:05 libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx0-dbg libquadmath0-dbg build 03-Apr-2019 16:20:05 glibc-doc man-browser gfortran python-nose python-numpy-dbg python-numpy-doc build 03-Apr-2019 16:20:05 The following NEW packages will be installed: build 03-Apr-2019 16:20:05 binutils cpp cpp-5 gcc gcc-5 libasan2 libatomic1 libblas-common libblas3 build 03-Apr-2019 16:20:05 libc-dev-bin libc6-dev libcc1-0 libcilkrts5 libexpat1-dev libgcc-5-dev build 03-Apr-2019 16:20:05 libgfortran3 libgmp10 libgomp1 libisl15 libitm1 liblapack3 liblsan0 libmpc3 build 03-Apr-2019 16:20:05 libmpfr4 libmpx0 libpython-dev libpython2.7 libpython2.7-dev libquadmath0 build 03-Apr-2019 16:20:05 libtsan0 libubsan0 linux-libc-dev manpages manpages-dev python-dev build 03-Apr-2019 16:20:05 python-numpy python2.7-dev build 03-Apr-2019 16:20:05 0 upgraded, 37 newly installed, 0 to remove and 6 not upgraded. build 03-Apr-2019 16:20:05 Need to get 62.2 MB of archives. build 03-Apr-2019 16:20:05 After this operation, 166 MB of additional disk space will be used. build 03-Apr-2019 16:20:05 Get:1 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgmp10 amd64 2:6.1.0+dfsg-2 [240 kB] build 03-Apr-2019 16:20:05 Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpfr4 amd64 3.1.4-1 [191 kB] build 03-Apr-2019 16:20:05 Get:3 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpc3 amd64 1.0.3-1 [39.7 kB] build 03-Apr-2019 16:20:05 Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 manpages all 4.04-2 [1087 kB] build 03-Apr-2019 16:20:05 Get:5 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 binutils amd64 2.26.1-1ubuntu1~16.04.8 [2312 kB] build 03-Apr-2019 16:20:05 Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libisl15 amd64 0.16.1-1 [524 kB] build 03-Apr-2019 16:20:05 Get:7 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 cpp-5 amd64 5.4.0-6ubuntu1~16.04.11 [7660 kB] build 03-Apr-2019 16:20:05 Get:8 http://archive.ubuntu.com/ubuntu xenial/main amd64 cpp amd64 4:5.3.1-1ubuntu1 [27.7 kB] build 03-Apr-2019 16:20:05 Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcc1-0 amd64 5.4.0-6ubuntu1~16.04.11 [38.8 kB] build 03-Apr-2019 16:20:05 Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgomp1 amd64 5.4.0-6ubuntu1~16.04.11 [55.0 kB] build 03-Apr-2019 16:20:05 Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libitm1 amd64 5.4.0-6ubuntu1~16.04.11 [27.4 kB] build 03-Apr-2019 16:20:05 Get:12 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libatomic1 amd64 5.4.0-6ubuntu1~16.04.11 [8896 B] build 03-Apr-2019 16:20:05 Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasan2 amd64 5.4.0-6ubuntu1~16.04.11 [264 kB] build 03-Apr-2019 16:20:05 Get:14 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 liblsan0 amd64 5.4.0-6ubuntu1~16.04.11 [105 kB] build 03-Apr-2019 16:20:05 Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtsan0 amd64 5.4.0-6ubuntu1~16.04.11 [244 kB] build 03-Apr-2019 16:20:05 Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libubsan0 amd64 5.4.0-6ubuntu1~16.04.11 [95.4 kB] build 03-Apr-2019 16:20:05 Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcilkrts5 amd64 5.4.0-6ubuntu1~16.04.11 [40.1 kB] build 03-Apr-2019 16:20:05 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmpx0 amd64 5.4.0-6ubuntu1~16.04.11 [9748 B] build 03-Apr-2019 16:20:05 Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libquadmath0 amd64 5.4.0-6ubuntu1~16.04.11 [131 kB] build 03-Apr-2019 16:20:05 Get:20 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgcc-5-dev amd64 5.4.0-6ubuntu1~16.04.11 [2229 kB] build 03-Apr-2019 16:20:06 Get:21 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gcc-5 amd64 5.4.0-6ubuntu1~16.04.11 [8417 kB] build 03-Apr-2019 16:20:06 Get:22 http://archive.ubuntu.com/ubuntu xenial/main amd64 gcc amd64 4:5.3.1-1ubuntu1 [5244 B] build 03-Apr-2019 16:20:06 Get:23 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas-common amd64 3.6.0-2ubuntu2 [5342 B] build 03-Apr-2019 16:20:06 Get:24 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas3 amd64 3.6.0-2ubuntu2 [147 kB] build 03-Apr-2019 16:20:06 Get:25 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc-dev-bin amd64 2.23-0ubuntu11 [68.5 kB] build 03-Apr-2019 16:20:06 Get:26 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 linux-libc-dev amd64 4.4.0-145.171 [874 kB] build 03-Apr-2019 16:20:06 Get:27 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc6-dev amd64 2.23-0ubuntu11 [2086 kB] build 03-Apr-2019 16:20:06 Get:28 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libexpat1-dev amd64 2.1.0-7ubuntu0.16.04.3 [115 kB] build 03-Apr-2019 16:20:06 Get:29 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran3 amd64 5.4.0-6ubuntu1~16.04.11 [260 kB] build 03-Apr-2019 16:20:06 Get:30 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblapack3 amd64 3.6.0-2ubuntu2 [1938 kB] build 03-Apr-2019 16:20:06 Get:31 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7 amd64 2.7.12-1ubuntu0~16.04.4 [1071 kB] build 03-Apr-2019 16:20:06 Get:32 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-dev amd64 2.7.12-1ubuntu0~16.04.4 [27.8 MB] build 03-Apr-2019 16:20:06 Get:33 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython-dev amd64 2.7.12-1~16.04 [7840 B] build 03-Apr-2019 16:20:06 Get:34 http://archive.ubuntu.com/ubuntu xenial/main amd64 manpages-dev all 4.04-2 [2048 kB] build 03-Apr-2019 16:20:06 Get:35 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7-dev amd64 2.7.12-1ubuntu0~16.04.4 [276 kB] build 03-Apr-2019 16:20:06 Get:36 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-dev amd64 2.7.12-1~16.04 [1186 B] build 03-Apr-2019 16:20:06 Get:37 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-numpy amd64 1:1.11.0-1ubuntu1 [1763 kB] build 03-Apr-2019 16:20:06 debconf: delaying package configuration, since apt-utils is not installed build 03-Apr-2019 16:20:07 Fetched 62.2 MB in 1s (52.5 MB/s) build 03-Apr-2019 16:20:07 Selecting previously unselected package libgmp10:amd64. build 03-Apr-2019 16:20:07 (Reading database ... build 03-Apr-2019 16:20:07 (Reading database ... 5% build 03-Apr-2019 16:20:07 (Reading database ... 10% build 03-Apr-2019 16:20:07 (Reading 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currently installed.) build 03-Apr-2019 16:20:07 Preparing to unpack .../libgmp10_2%3a6.1.0+dfsg-2_amd64.deb ... build 03-Apr-2019 16:20:08 Unpacking libgmp10:amd64 (2:6.1.0+dfsg-2) ... build 03-Apr-2019 16:20:09 Selecting previously unselected package libmpfr4:amd64. build 03-Apr-2019 16:20:09 Preparing to unpack .../libmpfr4_3.1.4-1_amd64.deb ... build 03-Apr-2019 16:20:09 Unpacking libmpfr4:amd64 (3.1.4-1) ... build 03-Apr-2019 16:20:11 Selecting previously unselected package libmpc3:amd64. build 03-Apr-2019 16:20:11 Preparing to unpack .../libmpc3_1.0.3-1_amd64.deb ... build 03-Apr-2019 16:20:11 Unpacking libmpc3:amd64 (1.0.3-1) ... build 03-Apr-2019 16:20:11 Selecting previously unselected package manpages. build 03-Apr-2019 16:20:11 Preparing to unpack .../manpages_4.04-2_all.deb ... build 03-Apr-2019 16:20:11 Unpacking manpages (4.04-2) ... build 03-Apr-2019 16:20:12 Selecting previously unselected package binutils. build 03-Apr-2019 16:20:12 Preparing to unpack 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.../libcc1-0_5.4.0-6ubuntu1~16.04.11_amd64.deb ... build 03-Apr-2019 16:20:20 Unpacking libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 03-Apr-2019 16:20:21 Selecting previously unselected package libgomp1:amd64. build 03-Apr-2019 16:20:21 Preparing to unpack .../libgomp1_5.4.0-6ubuntu1~16.04.11_amd64.deb ... build 03-Apr-2019 16:20:21 Unpacking libgomp1:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 03-Apr-2019 16:20:22 Selecting previously unselected package libitm1:amd64. build 03-Apr-2019 16:20:22 Preparing to unpack .../libitm1_5.4.0-6ubuntu1~16.04.11_amd64.deb ... build 03-Apr-2019 16:20:22 Unpacking libitm1:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 03-Apr-2019 16:20:24 Selecting previously unselected package libatomic1:amd64. build 03-Apr-2019 16:20:24 Preparing to unpack .../libatomic1_5.4.0-6ubuntu1~16.04.11_amd64.deb ... build 03-Apr-2019 16:20:24 Unpacking libatomic1:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 03-Apr-2019 16:20:26 Selecting previously unselected package libasan2:amd64. build 03-Apr-2019 16:20:26 Preparing to unpack .../libasan2_5.4.0-6ubuntu1~16.04.11_amd64.deb ... build 03-Apr-2019 16:20:26 Unpacking libasan2:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 03-Apr-2019 16:20:28 Selecting previously unselected package liblsan0:amd64. build 03-Apr-2019 16:20:28 Preparing to unpack .../liblsan0_5.4.0-6ubuntu1~16.04.11_amd64.deb ... build 03-Apr-2019 16:20:28 Unpacking liblsan0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 03-Apr-2019 16:20:29 Selecting previously unselected package libtsan0:amd64. build 03-Apr-2019 16:20:29 Preparing to unpack .../libtsan0_5.4.0-6ubuntu1~16.04.11_amd64.deb ... build 03-Apr-2019 16:20:29 Unpacking libtsan0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 03-Apr-2019 16:20:30 Selecting previously unselected package libubsan0:amd64. build 03-Apr-2019 16:20:30 Preparing to unpack .../libubsan0_5.4.0-6ubuntu1~16.04.11_amd64.deb ... build 03-Apr-2019 16:20:30 Unpacking libubsan0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 03-Apr-2019 16:20:32 Selecting previously unselected package libcilkrts5:amd64. build 03-Apr-2019 16:20:32 Preparing to unpack .../libcilkrts5_5.4.0-6ubuntu1~16.04.11_amd64.deb ... build 03-Apr-2019 16:20:32 Unpacking libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 03-Apr-2019 16:20:33 Selecting previously unselected package libmpx0:amd64. build 03-Apr-2019 16:20:33 Preparing to unpack .../libmpx0_5.4.0-6ubuntu1~16.04.11_amd64.deb ... build 03-Apr-2019 16:20:33 Unpacking libmpx0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 03-Apr-2019 16:20:33 Selecting previously unselected package libquadmath0:amd64. build 03-Apr-2019 16:20:33 Preparing to unpack .../libquadmath0_5.4.0-6ubuntu1~16.04.11_amd64.deb ... build 03-Apr-2019 16:20:34 Unpacking libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 03-Apr-2019 16:20:35 Selecting previously unselected package libgcc-5-dev:amd64. build 03-Apr-2019 16:20:35 Preparing to unpack .../libgcc-5-dev_5.4.0-6ubuntu1~16.04.11_amd64.deb ... build 03-Apr-2019 16:20:35 Unpacking libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 03-Apr-2019 16:20:37 Selecting previously unselected package gcc-5. build 03-Apr-2019 16:20:37 Preparing to unpack .../gcc-5_5.4.0-6ubuntu1~16.04.11_amd64.deb ... build 03-Apr-2019 16:20:37 Unpacking gcc-5 (5.4.0-6ubuntu1~16.04.11) ... build 03-Apr-2019 16:20:39 Selecting previously unselected package gcc. build 03-Apr-2019 16:20:39 Preparing to unpack .../gcc_4%3a5.3.1-1ubuntu1_amd64.deb ... build 03-Apr-2019 16:20:39 Unpacking gcc (4:5.3.1-1ubuntu1) ... build 03-Apr-2019 16:20:41 Selecting previously unselected package libblas-common. build 03-Apr-2019 16:20:41 Preparing to unpack .../libblas-common_3.6.0-2ubuntu2_amd64.deb ... build 03-Apr-2019 16:20:41 Unpacking libblas-common (3.6.0-2ubuntu2) ... build 03-Apr-2019 16:20:42 Selecting previously unselected package libblas3. build 03-Apr-2019 16:20:42 Preparing to unpack .../libblas3_3.6.0-2ubuntu2_amd64.deb ... build 03-Apr-2019 16:20:42 Unpacking libblas3 (3.6.0-2ubuntu2) ... build 03-Apr-2019 16:20:42 Selecting previously unselected package libc-dev-bin. build 03-Apr-2019 16:20:42 Preparing to unpack .../libc-dev-bin_2.23-0ubuntu11_amd64.deb ... build 03-Apr-2019 16:20:42 Unpacking libc-dev-bin (2.23-0ubuntu11) ... build 03-Apr-2019 16:20:44 Selecting previously unselected package linux-libc-dev:amd64. build 03-Apr-2019 16:20:44 Preparing to unpack .../linux-libc-dev_4.4.0-145.171_amd64.deb ... build 03-Apr-2019 16:20:44 Unpacking linux-libc-dev:amd64 (4.4.0-145.171) ... build 03-Apr-2019 16:20:46 Selecting previously unselected package libc6-dev:amd64. build 03-Apr-2019 16:20:46 Preparing to unpack .../libc6-dev_2.23-0ubuntu11_amd64.deb ... build 03-Apr-2019 16:20:46 Unpacking libc6-dev:amd64 (2.23-0ubuntu11) ... build 03-Apr-2019 16:20:47 Selecting previously unselected package libexpat1-dev:amd64. build 03-Apr-2019 16:20:47 Preparing to unpack .../libexpat1-dev_2.1.0-7ubuntu0.16.04.3_amd64.deb ... build 03-Apr-2019 16:20:48 Unpacking libexpat1-dev:amd64 (2.1.0-7ubuntu0.16.04.3) ... build 03-Apr-2019 16:20:49 Selecting previously unselected package libgfortran3:amd64. build 03-Apr-2019 16:20:49 Preparing to unpack .../libgfortran3_5.4.0-6ubuntu1~16.04.11_amd64.deb ... build 03-Apr-2019 16:20:49 Unpacking libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 03-Apr-2019 16:20:50 Selecting previously unselected package liblapack3. build 03-Apr-2019 16:20:50 Preparing to unpack .../liblapack3_3.6.0-2ubuntu2_amd64.deb ... build 03-Apr-2019 16:20:51 Unpacking liblapack3 (3.6.0-2ubuntu2) ... build 03-Apr-2019 16:20:52 Selecting previously unselected package libpython2.7:amd64. build 03-Apr-2019 16:20:52 Preparing to unpack .../libpython2.7_2.7.12-1ubuntu0~16.04.4_amd64.deb ... build 03-Apr-2019 16:20:52 Unpacking libpython2.7:amd64 (2.7.12-1ubuntu0~16.04.4) ... build 03-Apr-2019 16:20:53 Selecting previously unselected package libpython2.7-dev:amd64. build 03-Apr-2019 16:20:53 Preparing to unpack .../libpython2.7-dev_2.7.12-1ubuntu0~16.04.4_amd64.deb ... build 03-Apr-2019 16:20:53 Unpacking libpython2.7-dev:amd64 (2.7.12-1ubuntu0~16.04.4) ... build 03-Apr-2019 16:20:57 Selecting previously unselected package libpython-dev:amd64. build 03-Apr-2019 16:20:57 Preparing to unpack .../libpython-dev_2.7.12-1~16.04_amd64.deb ... build 03-Apr-2019 16:20:57 Unpacking libpython-dev:amd64 (2.7.12-1~16.04) ... build 03-Apr-2019 16:20:59 Selecting previously unselected package manpages-dev. build 03-Apr-2019 16:20:59 Preparing to unpack .../manpages-dev_4.04-2_all.deb ... build 03-Apr-2019 16:20:59 Unpacking manpages-dev (4.04-2) ... build 03-Apr-2019 16:21:01 Selecting previously unselected package python2.7-dev. build 03-Apr-2019 16:21:01 Preparing to unpack .../python2.7-dev_2.7.12-1ubuntu0~16.04.4_amd64.deb ... build 03-Apr-2019 16:21:01 Unpacking python2.7-dev (2.7.12-1ubuntu0~16.04.4) ... build 03-Apr-2019 16:21:03 Selecting previously unselected package python-dev. build 03-Apr-2019 16:21:03 Preparing to unpack .../python-dev_2.7.12-1~16.04_amd64.deb ... build 03-Apr-2019 16:21:03 Unpacking python-dev (2.7.12-1~16.04) ... build 03-Apr-2019 16:21:04 Selecting previously unselected package python-numpy. build 03-Apr-2019 16:21:04 Preparing to unpack .../python-numpy_1%3a1.11.0-1ubuntu1_amd64.deb ... build 03-Apr-2019 16:21:04 Unpacking python-numpy (1:1.11.0-1ubuntu1) ... build 03-Apr-2019 16:21:06 Processing triggers for libc-bin (2.23-0ubuntu11) ... build 03-Apr-2019 16:21:07 Setting up libgmp10:amd64 (2:6.1.0+dfsg-2) ... build 03-Apr-2019 16:21:07 Setting up libmpfr4:amd64 (3.1.4-1) ... build 03-Apr-2019 16:21:08 Setting up libmpc3:amd64 (1.0.3-1) ... build 03-Apr-2019 16:21:08 Setting up manpages (4.04-2) ... build 03-Apr-2019 16:21:09 Setting up binutils (2.26.1-1ubuntu1~16.04.8) ... build 03-Apr-2019 16:21:10 Setting up libisl15:amd64 (0.16.1-1) ... build 03-Apr-2019 16:21:10 Setting up cpp-5 (5.4.0-6ubuntu1~16.04.11) ... build 03-Apr-2019 16:21:11 Setting up cpp (4:5.3.1-1ubuntu1) ... build 03-Apr-2019 16:21:11 Setting up libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 03-Apr-2019 16:21:12 Setting up libgomp1:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 03-Apr-2019 16:21:13 Setting up libitm1:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 03-Apr-2019 16:21:13 Setting up libatomic1:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 03-Apr-2019 16:21:13 Setting up libasan2:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 03-Apr-2019 16:21:14 Setting up liblsan0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 03-Apr-2019 16:21:15 Setting up libtsan0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 03-Apr-2019 16:21:15 Setting up libubsan0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 03-Apr-2019 16:21:16 Setting up libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 03-Apr-2019 16:21:17 Setting up libmpx0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 03-Apr-2019 16:21:17 Setting up libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 03-Apr-2019 16:21:17 Setting up libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 03-Apr-2019 16:21:18 Setting up gcc-5 (5.4.0-6ubuntu1~16.04.11) ... build 03-Apr-2019 16:21:18 Setting up gcc (4:5.3.1-1ubuntu1) ... build 03-Apr-2019 16:21:19 Setting up libblas-common (3.6.0-2ubuntu2) ... build 03-Apr-2019 16:21:20 Setting up libblas3 (3.6.0-2ubuntu2) ... build 03-Apr-2019 16:21:20 update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode build 03-Apr-2019 16:21:21 Setting up libc-dev-bin (2.23-0ubuntu11) ... build 03-Apr-2019 16:21:22 Setting up linux-libc-dev:amd64 (4.4.0-145.171) ... build 03-Apr-2019 16:21:22 Setting up libc6-dev:amd64 (2.23-0ubuntu11) ... build 03-Apr-2019 16:21:22 Setting up libexpat1-dev:amd64 (2.1.0-7ubuntu0.16.04.3) ... build 03-Apr-2019 16:21:23 Setting up libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 03-Apr-2019 16:21:23 Setting up liblapack3 (3.6.0-2ubuntu2) ... build 03-Apr-2019 16:21:24 update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode build 03-Apr-2019 16:21:24 Setting up libpython2.7:amd64 (2.7.12-1ubuntu0~16.04.4) ... build 03-Apr-2019 16:21:25 Setting up libpython2.7-dev:amd64 (2.7.12-1ubuntu0~16.04.4) ... build 03-Apr-2019 16:21:25 Setting up libpython-dev:amd64 (2.7.12-1~16.04) ... build 03-Apr-2019 16:21:25 Setting up manpages-dev (4.04-2) ... build 03-Apr-2019 16:21:25 Setting up python2.7-dev (2.7.12-1ubuntu0~16.04.4) ... build 03-Apr-2019 16:21:26 Setting up python-dev (2.7.12-1~16.04) ... build 03-Apr-2019 16:21:27 Setting up python-numpy (1:1.11.0-1ubuntu1) ... build 03-Apr-2019 16:21:29 Processing triggers for libc-bin (2.23-0ubuntu11) ... build 03-Apr-2019 16:21:30 Collecting Flask==0.10.1 (from -r /home/clowder/requirements.txt (line 1)) build 03-Apr-2019 16:21:30 Downloading https://files.pythonhosted.org/packages/db/9c/149ba60c47d107f85fe52564133348458f093dd5e6b57a5b60ab9ac517bb/Flask-0.10.1.tar.gz (544kB) build 03-Apr-2019 16:21:30 Collecting html5lib==0.99999 (from -r /home/clowder/requirements.txt (line 2)) build 03-Apr-2019 16:21:31 Downloading https://files.pythonhosted.org/packages/0d/0f/6e7a4171c150e4c52cff10184697a63dd9eaeae5c7b7f5023ef6b16aaf59/html5lib-0.99999.tar.gz (887kB) build 03-Apr-2019 16:21:31 Collecting isodate==0.5.1 (from -r /home/clowder/requirements.txt (line 3)) build 03-Apr-2019 16:21:31 Downloading https://files.pythonhosted.org/packages/4a/98/07f5bb685219005c3a5788ebe492561c44a75d6b690446667ab508ef070d/isodate-0.5.1.tar.gz build 03-Apr-2019 16:21:31 Collecting itsdangerous==0.24 (from -r /home/clowder/requirements.txt (line 4)) build 03-Apr-2019 16:21:31 Downloading https://files.pythonhosted.org/packages/dc/b4/a60bcdba945c00f6d608d8975131ab3f25b22f2bcfe1dab221165194b2d4/itsdangerous-0.24.tar.gz (46kB) build 03-Apr-2019 16:21:31 Collecting Jinja2==2.7.3 (from -r /home/clowder/requirements.txt (line 5)) build 03-Apr-2019 16:21:31 Downloading https://files.pythonhosted.org/packages/b0/73/eab0bca302d6d6a0b5c402f47ad1760dc9cb2dd14bbc1873ad48db258e4d/Jinja2-2.7.3.tar.gz (378kB) build 03-Apr-2019 16:21:32 Collecting MarkupSafe==0.23 (from -r /home/clowder/requirements.txt (line 6)) build 03-Apr-2019 16:21:32 Downloading https://files.pythonhosted.org/packages/c0/41/bae1254e0396c0cc8cf1751cb7d9afc90a602353695af5952530482c963f/MarkupSafe-0.23.tar.gz build 03-Apr-2019 16:21:32 Collecting nltk==3.0.3 (from -r /home/clowder/requirements.txt (line 7)) build 03-Apr-2019 16:21:32 Downloading https://files.pythonhosted.org/packages/69/3e/b5e0e0210931539a3f77e0537e2e462b929b019a723895bd69357ad20bc3/nltk-3.0.3.tar.gz (1.0MB) build 03-Apr-2019 16:21:32 Collecting pika==0.10.0 (from -r /home/clowder/requirements.txt (line 9)) build 03-Apr-2019 16:21:33 Downloading https://files.pythonhosted.org/packages/26/12/400cf0aca6b1ecf1f00dcd89b246e7a4c8558677304ba067167b8167e714/pika-0.10.0-py2.py3-none-any.whl (92kB) build 03-Apr-2019 16:21:33 Collecting pyparsing==2.0.3 (from -r /home/clowder/requirements.txt (line 11)) build 03-Apr-2019 16:21:33 Downloading https://files.pythonhosted.org/packages/8f/f4/3a70b5e5b865b1ec45fe48dc5a57cd4facb5c7bd80e5cb1255c362732e81/pyparsing-2.0.3-py2.py3-none-any.whl build 03-Apr-2019 16:21:33 Collecting rdflib==4.2.0 (from -r /home/clowder/requirements.txt (line 12)) build 03-Apr-2019 16:21:33 Downloading https://files.pythonhosted.org/packages/23/13/cb881e853fa0ed79e35dbd527a98cb986c3e0d5fae8ebfdb6ef3cffb6298/rdflib-4.2.0.tar.gz (881kB) build 03-Apr-2019 16:21:34 Collecting requests==2.7.0 (from -r /home/clowder/requirements.txt (line 13)) build 03-Apr-2019 16:21:34 Downloading https://files.pythonhosted.org/packages/26/ff/c71b3943bebdd9f7ceb9e137296370587eb0b33fe2eb3732ae168bc45204/requests-2.7.0-py2.py3-none-any.whl (470kB) build 03-Apr-2019 16:21:34 Collecting six==1.9.0 (from -r /home/clowder/requirements.txt (line 14)) build 03-Apr-2019 16:21:34 Downloading https://files.pythonhosted.org/packages/10/e3/a7f8eea80a9fa8358c1cd89ef489bc03675e69e54ed2982cd6f2a28d8295/six-1.9.0-py2.py3-none-any.whl build 03-Apr-2019 16:21:34 Collecting SPARQLWrapper==1.6.4 (from -r /home/clowder/requirements.txt (line 15)) build 03-Apr-2019 16:21:34 Downloading https://files.pythonhosted.org/packages/6b/07/751e164e2e5debc18eb92fbe0798a62d668af8801c8adf38b6f32bcc5eed/SPARQLWrapper-1.6.4.tar.gz build 03-Apr-2019 16:21:35 Collecting Werkzeug==0.10.4 (from -r /home/clowder/requirements.txt (line 16)) build 03-Apr-2019 16:21:35 Downloading https://files.pythonhosted.org/packages/49/0c/e33c2caec86a7926186f7d454f6a901f45f05ad90337c6972d170b9ee806/Werkzeug-0.10.4-py2.py3-none-any.whl (293kB) build 03-Apr-2019 16:21:35 Collecting wheel==0.24.0 (from -r /home/clowder/requirements.txt (line 17)) build 03-Apr-2019 16:21:35 Downloading https://files.pythonhosted.org/packages/e8/14/eaaac12b0432c984a27ad0050a5a0bedc6135df35a0f5f1f35228faf12d4/wheel-0.24.0-py2.py3-none-any.whl (63kB) build 03-Apr-2019 16:21:35 Building wheels for collected packages: Flask, html5lib, isodate, itsdangerous, Jinja2, MarkupSafe, nltk, rdflib, SPARQLWrapper build 03-Apr-2019 16:21:35 Running setup.py bdist_wheel for Flask: started build 03-Apr-2019 16:21:35 Running setup.py bdist_wheel for Flask: finished with status 'error' build 03-Apr-2019 16:21:35 Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-qikjlC/Flask/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpxdgJGjpip-wheel- --python-tag cp27: build 03-Apr-2019 16:21:35 usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] build 03-Apr-2019 16:21:35 or: -c --help [cmd1 cmd2 ...] build 03-Apr-2019 16:21:35 or: -c --help-commands build 03-Apr-2019 16:21:35 or: -c cmd --help build 03-Apr-2019 16:21:35 build 03-Apr-2019 16:21:35 error: invalid command 'bdist_wheel' build 03-Apr-2019 16:21:35 build 03-Apr-2019 16:21:35 ---------------------------------------- build 03-Apr-2019 16:21:35  Failed building wheel for Flask build 03-Apr-2019 16:21:35  Running setup.py clean for Flask build 03-Apr-2019 16:21:35 Running setup.py bdist_wheel for html5lib: started build 03-Apr-2019 16:21:35 Running setup.py bdist_wheel for html5lib: finished with status 'error' build 03-Apr-2019 16:21:35 Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-qikjlC/html5lib/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpxX0fxHpip-wheel- --python-tag cp27: build 03-Apr-2019 16:21:35 usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] build 03-Apr-2019 16:21:35 or: -c --help [cmd1 cmd2 ...] build 03-Apr-2019 16:21:35 or: -c --help-commands build 03-Apr-2019 16:21:35 or: -c cmd --help build 03-Apr-2019 16:21:35 build 03-Apr-2019 16:21:35 error: invalid command 'bdist_wheel' build 03-Apr-2019 16:21:35 build 03-Apr-2019 16:21:35 ---------------------------------------- build 03-Apr-2019 16:21:35  Failed building wheel for html5lib build 03-Apr-2019 16:21:35  Running setup.py clean for html5lib build 03-Apr-2019 16:21:35 Running setup.py bdist_wheel for isodate: started build 03-Apr-2019 16:21:36 Running setup.py bdist_wheel for isodate: finished with status 'error' build 03-Apr-2019 16:21:36 Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-qikjlC/isodate/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpGNy2Bnpip-wheel- --python-tag cp27: build 03-Apr-2019 16:21:36 usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] build 03-Apr-2019 16:21:36 or: -c --help [cmd1 cmd2 ...] build 03-Apr-2019 16:21:36 or: -c --help-commands build 03-Apr-2019 16:21:36 or: -c cmd --help build 03-Apr-2019 16:21:36 build 03-Apr-2019 16:21:36 error: invalid command 'bdist_wheel' build 03-Apr-2019 16:21:36 build 03-Apr-2019 16:21:36 ---------------------------------------- build 03-Apr-2019 16:21:36  Failed building wheel for isodate build 03-Apr-2019 16:21:36  Running setup.py clean for isodate build 03-Apr-2019 16:21:36 Running setup.py bdist_wheel for itsdangerous: started build 03-Apr-2019 16:21:36 Running setup.py bdist_wheel for itsdangerous: finished with status 'error' build 03-Apr-2019 16:21:36 Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-qikjlC/itsdangerous/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpBMAvvbpip-wheel- --python-tag cp27: build 03-Apr-2019 16:21:36 usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] build 03-Apr-2019 16:21:36 or: -c --help [cmd1 cmd2 ...] build 03-Apr-2019 16:21:36 or: -c --help-commands build 03-Apr-2019 16:21:36 or: -c cmd --help build 03-Apr-2019 16:21:36 build 03-Apr-2019 16:21:36 error: invalid command 'bdist_wheel' build 03-Apr-2019 16:21:36 build 03-Apr-2019 16:21:36 ---------------------------------------- build 03-Apr-2019 16:21:36  Failed building wheel for itsdangerous build 03-Apr-2019 16:21:36  Running setup.py clean for itsdangerous build 03-Apr-2019 16:21:36 Running setup.py bdist_wheel for Jinja2: started build 03-Apr-2019 16:21:36 Running setup.py bdist_wheel for Jinja2: finished with status 'error' build 03-Apr-2019 16:21:36 Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-qikjlC/Jinja2/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpD_TICypip-wheel- --python-tag cp27: build 03-Apr-2019 16:21:36 usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] build 03-Apr-2019 16:21:36 or: -c --help [cmd1 cmd2 ...] build 03-Apr-2019 16:21:36 or: -c --help-commands build 03-Apr-2019 16:21:36 or: -c cmd --help build 03-Apr-2019 16:21:36 build 03-Apr-2019 16:21:36 error: invalid command 'bdist_wheel' build 03-Apr-2019 16:21:36 build 03-Apr-2019 16:21:36 ---------------------------------------- build 03-Apr-2019 16:21:36  Failed building wheel for Jinja2 build 03-Apr-2019 16:21:36  Running setup.py clean for Jinja2 build 03-Apr-2019 16:21:36 Running setup.py bdist_wheel for MarkupSafe: started build 03-Apr-2019 16:21:36 Running setup.py bdist_wheel for MarkupSafe: finished with status 'error' build 03-Apr-2019 16:21:36 Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-qikjlC/MarkupSafe/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpAciv2Wpip-wheel- --python-tag cp27: build 03-Apr-2019 16:21:36 usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] build 03-Apr-2019 16:21:36 or: -c --help [cmd1 cmd2 ...] build 03-Apr-2019 16:21:36 or: -c --help-commands build 03-Apr-2019 16:21:36 or: -c cmd --help build 03-Apr-2019 16:21:36 build 03-Apr-2019 16:21:36 error: invalid command 'bdist_wheel' build 03-Apr-2019 16:21:36 build 03-Apr-2019 16:21:36 ---------------------------------------- build 03-Apr-2019 16:21:36  Failed building wheel for MarkupSafe build 03-Apr-2019 16:21:36  Running setup.py clean for MarkupSafe build 03-Apr-2019 16:21:37 Running setup.py bdist_wheel for nltk: started build 03-Apr-2019 16:21:37 Running setup.py bdist_wheel for nltk: finished with status 'error' build 03-Apr-2019 16:21:37 Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-qikjlC/nltk/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpewPKAlpip-wheel- --python-tag cp27: build 03-Apr-2019 16:21:37 usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] build 03-Apr-2019 16:21:37 or: -c --help [cmd1 cmd2 ...] build 03-Apr-2019 16:21:37 or: -c --help-commands build 03-Apr-2019 16:21:37 or: -c cmd --help build 03-Apr-2019 16:21:37 build 03-Apr-2019 16:21:37 error: invalid command 'bdist_wheel' build 03-Apr-2019 16:21:37 build 03-Apr-2019 16:21:37 ---------------------------------------- build 03-Apr-2019 16:21:37  Failed building wheel for nltk build 03-Apr-2019 16:21:37  Running setup.py clean for nltk build 03-Apr-2019 16:21:37 Running setup.py bdist_wheel for rdflib: started build 03-Apr-2019 16:21:37 Running setup.py bdist_wheel for rdflib: finished with status 'error' build 03-Apr-2019 16:21:37 Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-qikjlC/rdflib/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpZeqjWTpip-wheel- --python-tag cp27: build 03-Apr-2019 16:21:37 usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] build 03-Apr-2019 16:21:37 or: -c --help [cmd1 cmd2 ...] build 03-Apr-2019 16:21:37 or: -c --help-commands build 03-Apr-2019 16:21:37 or: -c cmd --help build 03-Apr-2019 16:21:37 build 03-Apr-2019 16:21:37 error: invalid command 'bdist_wheel' build 03-Apr-2019 16:21:37 build 03-Apr-2019 16:21:37 ---------------------------------------- build 03-Apr-2019 16:21:37  Failed building wheel for rdflib build 03-Apr-2019 16:21:37  Running setup.py clean for rdflib build 03-Apr-2019 16:21:37 Running setup.py bdist_wheel for SPARQLWrapper: started build 03-Apr-2019 16:21:37 Running setup.py bdist_wheel for SPARQLWrapper: finished with status 'error' build 03-Apr-2019 16:21:37 Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-qikjlC/SPARQLWrapper/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmp3X5Ci6pip-wheel- --python-tag cp27: build 03-Apr-2019 16:21:37 usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] build 03-Apr-2019 16:21:37 or: -c --help [cmd1 cmd2 ...] build 03-Apr-2019 16:21:37 or: -c --help-commands build 03-Apr-2019 16:21:37 or: -c cmd --help build 03-Apr-2019 16:21:37 build 03-Apr-2019 16:21:37 error: invalid command 'bdist_wheel' build 03-Apr-2019 16:21:37 build 03-Apr-2019 16:21:37 ---------------------------------------- build 03-Apr-2019 16:21:37  Failed building wheel for SPARQLWrapper build 03-Apr-2019 16:21:37  Running setup.py clean for SPARQLWrapper build 03-Apr-2019 16:21:38 Failed to build Flask html5lib isodate itsdangerous Jinja2 MarkupSafe nltk rdflib SPARQLWrapper build 03-Apr-2019 16:21:38 Installing collected packages: Werkzeug, MarkupSafe, Jinja2, itsdangerous, Flask, six, html5lib, isodate, nltk, pika, pyparsing, SPARQLWrapper, rdflib, requests, wheel build 03-Apr-2019 16:21:38 Running setup.py install for MarkupSafe: started build 03-Apr-2019 16:21:38 Running setup.py install for MarkupSafe: finished with status 'done' build 03-Apr-2019 16:21:38 Running setup.py install for Jinja2: started build 03-Apr-2019 16:21:38 Running setup.py install for Jinja2: finished with status 'done' build 03-Apr-2019 16:21:38 Running setup.py install for itsdangerous: started build 03-Apr-2019 16:21:38 Running setup.py install for itsdangerous: finished with status 'done' build 03-Apr-2019 16:21:38 Running setup.py install for Flask: started build 03-Apr-2019 16:21:39 Running setup.py install for Flask: finished with status 'done' build 03-Apr-2019 16:21:39 Running setup.py install for html5lib: started build 03-Apr-2019 16:21:39 Running setup.py install for html5lib: finished with status 'done' build 03-Apr-2019 16:21:39 Running setup.py install for isodate: started build 03-Apr-2019 16:21:39 Running setup.py install for isodate: finished with status 'done' build 03-Apr-2019 16:21:39 Running setup.py install for nltk: started build 03-Apr-2019 16:21:40 Running setup.py install for nltk: finished with status 'done' build 03-Apr-2019 16:21:40 Found existing installation: pika 1.0.0 build 03-Apr-2019 16:21:40 Uninstalling pika-1.0.0: build 03-Apr-2019 16:21:46 Successfully uninstalled pika-1.0.0 build 03-Apr-2019 16:21:46 Running setup.py install for SPARQLWrapper: started build 03-Apr-2019 16:21:46 Running setup.py install for SPARQLWrapper: finished with status 'done' build 03-Apr-2019 16:21:46 Running setup.py install for rdflib: started build 03-Apr-2019 16:21:47 Running setup.py install for rdflib: finished with status 'done' build 03-Apr-2019 16:21:47 Found existing installation: requests 2.21.0 build 03-Apr-2019 16:21:47 Uninstalling requests-2.21.0: build 03-Apr-2019 16:21:51 Successfully uninstalled requests-2.21.0 build 03-Apr-2019 16:21:52 Successfully installed Flask-0.10.1 Jinja2-2.7.3 MarkupSafe-0.23 SPARQLWrapper-1.6.4 Werkzeug-0.10.4 html5lib-0.99999 isodate-0.5.1 itsdangerous-0.24 nltk-3.0.3 pika-0.10.0 pyparsing-2.0.3 rdflib-4.2.0 requests-2.7.0 six-1.9.0 wheel-0.24.0 build 03-Apr-2019 16:21:52 You are using pip version 8.1.1, however version 19.0.3 is available. build 03-Apr-2019 16:21:52 You should consider upgrading via the 'pip install --upgrade pip' command. build 03-Apr-2019 16:21:57 Removing intermediate container 0ce08ac73556 build 03-Apr-2019 16:21:57 ---> 8286ac25dfdd build 03-Apr-2019 16:21:57 Step 6/13 : USER clowder build 03-Apr-2019 16:21:58 ---> Running in 1dfafadd0660 build 03-Apr-2019 16:21:59 Removing intermediate container 1dfafadd0660 build 03-Apr-2019 16:21:59 ---> 6fdffce64e91 build 03-Apr-2019 16:21:59 Step 7/13 : COPY namedentityrecognition.py /home/clowder/ build 03-Apr-2019 16:21:59 ---> b74551346a96 build 03-Apr-2019 16:21:59 Step 8/13 : RUN /home/clowder/namedentityrecognition.py build 03-Apr-2019 16:22:00 ---> Running in f0f7f321f640 error 03-Apr-2019 16:22:01 linux spec user: unable to find user clowder: no matching entries in passwd file error 03-Apr-2019 16:22:01 docker.sh: 53: exit: Illegal number: -1 build 03-Apr-2019 16:22:01 FAILED build of ./Dockerfile simple 03-Apr-2019 16:22:01 Failing task since return code of [/bin/sh docker.sh] was 2 while expected 0 simple 03-Apr-2019 16:22:01 Finished task 'docker build' with result: Failed simple 03-Apr-2019 16:22:01 Running post build plugin 'Docker Container Cleanup' simple 03-Apr-2019 16:22:01 Running post build plugin 'NCover Results Collector' simple 03-Apr-2019 16:22:01 Running post build plugin 'Clover Results Collector' simple 03-Apr-2019 16:22:01 Running post build plugin 'npm Cache Cleanup' simple 03-Apr-2019 16:22:01 Running post build plugin 'Artifact Copier' simple 03-Apr-2019 16:22:01 Finalising the build... simple 03-Apr-2019 16:22:01 Stopping timer. simple 03-Apr-2019 16:22:01 Build CATS-EXDBP-JOB1-38 completed. simple 03-Apr-2019 16:22:01 Running on server: post build plugin 'NCover Results Collector' simple 03-Apr-2019 16:22:01 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 03-Apr-2019 16:22:01 Running on server: post build plugin 'Clover Delta Calculator' simple 03-Apr-2019 16:22:01 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 03-Apr-2019 16:22:01 All post build plugins have finished simple 03-Apr-2019 16:22:01 Generating build results summary... simple 03-Apr-2019 16:22:01 Saving build results to disk... simple 03-Apr-2019 16:22:01 Logging substituted variables... simple 03-Apr-2019 16:22:01 Indexing build results... simple 03-Apr-2019 16:22:01 Finished building CATS-EXDBP-JOB1-38.