simple 16-Aug-2018 14:14:07 Build Clowder - extractors-geo - SYN-172-Create-unique-workspace-name-in-the-geoserver - Default Job #1 (CATS-EXGEO13-JOB1-1) started building on agent buildserver-2.os.ncsa.edu simple 16-Aug-2018 14:14:07 Remote agent on host buildserver-2.os.ncsa.edu simple 16-Aug-2018 14:14:07 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXGEO13-JOB1 simple 16-Aug-2018 14:14:07 Executing build Clowder - extractors-geo - SYN-172-Create-unique-workspace-name-in-the-geoserver - Default Job #1 (CATS-EXGEO13-JOB1-1) simple 16-Aug-2018 14:14:07 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 16-Aug-2018 14:14:07 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXGEO13-JOB1 simple 16-Aug-2018 14:14:07 Updating source code to revision: ec72d414882fc954475072c9c69e1561e41c8980 simple 16-Aug-2018 14:14:07 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXGEO13-JOB1/.git'. simple 16-Aug-2018 14:14:07 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXGEO13-JOB1/.git/ simple 16-Aug-2018 14:14:07 Fetching 'refs/heads/SYN-172-Create-unique-workspace-name-in-the-geoserver' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-geo.git'. Will try to do a shallow fetch. simple 16-Aug-2018 14:14:07 Warning: Permanently added '[127.0.0.1]:37637' (RSA) to the list of known hosts. simple 16-Aug-2018 14:14:08 From ssh://127.0.0.1:37637/cats/extractors-geo simple 16-Aug-2018 14:14:08 * [new branch] SYN-172-Create-unique-workspace-name-in-the-geoserver -> SYN-172-Create-unique-workspace-name-in-the-geoserver simple 16-Aug-2018 14:14:08 Checking out revision ec72d414882fc954475072c9c69e1561e41c8980. simple 16-Aug-2018 14:14:08 Switched to branch 'SYN-172-Create-unique-workspace-name-in-the-geoserver' simple 16-Aug-2018 14:14:08 Updated source code to revision: ec72d414882fc954475072c9c69e1561e41c8980 simple 16-Aug-2018 14:14:08 Finished task 'Checkout Default Repository' with result: Success simple 16-Aug-2018 14:14:08 Running pre-build action: VCS Version Collector simple 16-Aug-2018 14:14:08 Starting task 'docker build' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 16-Aug-2018 14:14:08 Beginning to execute external process for build 'Clowder - extractors-geo - SYN-172-Create-unique-workspace-name-in-the-geoserver - Default Job #1 (CATS-EXGEO13-JOB1-1)'\n ... running command line: \n/bin/sh docker.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXGEO13-JOB1\n ... using extra environment variables: 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build 16-Aug-2018 14:14:08 Sending build context to Docker daemon 1.324MB build 16-Aug-2018 14:14:08 build 16-Aug-2018 14:14:08 Step 1/8 : FROM clowder/pyclowder:2 build 16-Aug-2018 14:14:09 2: Pulling from clowder/pyclowder build 16-Aug-2018 14:14:09 b234f539f7a1: Pulling fs layer build 16-Aug-2018 14:14:09 55172d420b43: Pulling fs layer build 16-Aug-2018 14:14:09 5ba5bbeb6b91: Pulling fs layer build 16-Aug-2018 14:14:09 43ae2841ad7a: Pulling fs layer build 16-Aug-2018 14:14:09 f6c9c6de4190: Pulling fs layer build 16-Aug-2018 14:14:09 d09498741374: Pulling fs layer build 16-Aug-2018 14:14:09 00f9ba584920: Pulling fs layer build 16-Aug-2018 14:14:09 5693300db94c: Pulling fs layer build 16-Aug-2018 14:14:09 4af4b0c37187: Pulling fs layer build 16-Aug-2018 14:14:09 d3c9efd4d105: Pulling fs layer build 16-Aug-2018 14:14:09 f6c9c6de4190: Waiting build 16-Aug-2018 14:14:09 d09498741374: Waiting build 16-Aug-2018 14:14:09 00f9ba584920: Waiting build 16-Aug-2018 14:14:09 5693300db94c: Waiting build 16-Aug-2018 14:14:09 4af4b0c37187: Waiting build 16-Aug-2018 14:14:09 d3c9efd4d105: Waiting build 16-Aug-2018 14:14:09 43ae2841ad7a: Waiting build 16-Aug-2018 14:14:09 55172d420b43: Download complete build 16-Aug-2018 14:14:09 5ba5bbeb6b91: Verifying Checksum build 16-Aug-2018 14:14:09 5ba5bbeb6b91: Download complete build 16-Aug-2018 14:14:09 43ae2841ad7a: Verifying Checksum build 16-Aug-2018 14:14:09 43ae2841ad7a: Download complete build 16-Aug-2018 14:14:09 f6c9c6de4190: Download complete build 16-Aug-2018 14:14:10 b234f539f7a1: Verifying Checksum build 16-Aug-2018 14:14:10 b234f539f7a1: Download complete build 16-Aug-2018 14:14:10 00f9ba584920: Verifying Checksum build 16-Aug-2018 14:14:10 00f9ba584920: Download complete build 16-Aug-2018 14:14:11 5693300db94c: Download complete build 16-Aug-2018 14:14:11 d09498741374: Verifying Checksum build 16-Aug-2018 14:14:11 d09498741374: Download complete build 16-Aug-2018 14:14:11 4af4b0c37187: Verifying Checksum build 16-Aug-2018 14:14:11 4af4b0c37187: Download complete build 16-Aug-2018 14:14:11 d3c9efd4d105: Download complete build 16-Aug-2018 14:14:12 b234f539f7a1: Pull complete build 16-Aug-2018 14:14:12 55172d420b43: Pull complete build 16-Aug-2018 14:14:13 5ba5bbeb6b91: Pull complete build 16-Aug-2018 14:14:13 43ae2841ad7a: Pull complete build 16-Aug-2018 14:14:14 f6c9c6de4190: Pull complete build 16-Aug-2018 14:14:15 d09498741374: Pull complete build 16-Aug-2018 14:14:15 00f9ba584920: Pull complete build 16-Aug-2018 14:14:16 5693300db94c: Pull complete build 16-Aug-2018 14:14:16 4af4b0c37187: Pull complete build 16-Aug-2018 14:14:17 d3c9efd4d105: Pull complete build 16-Aug-2018 14:14:17 Digest: sha256:c7db6d13f3f9a1aa9c624dc4782470a230d37d2cdee737d45d556f8e8d8948b3 build 16-Aug-2018 14:14:17 Status: Downloaded newer image for clowder/pyclowder:2 build 16-Aug-2018 14:14:17 ---> b27d04debca2 build 16-Aug-2018 14:14:17 Step 2/8 : MAINTAINER Yong Wook Kim build 16-Aug-2018 14:14:18 ---> Running in a5bcdbb4d4b2 build 16-Aug-2018 14:14:18 Removing intermediate container a5bcdbb4d4b2 build 16-Aug-2018 14:14:18 ---> 72a927114db4 build 16-Aug-2018 14:14:18 Step 3/8 : COPY requirements.txt /home/clowder/ build 16-Aug-2018 14:14:18 ---> e87ea353583f build 16-Aug-2018 14:14:18 Step 4/8 : RUN apt-get update && apt-get -y install python-dev python-pip python-dev build-essential python-numpy gdal-bin python-gdal python-scipy software-properties-common && apt-add-repository ppa:ubuntugis/ppa && pip install --upgrade pip==9.0.3 && pip install -r /home/clowder/requirements.txt && rm -rf /var/lib/apt/lists/* build 16-Aug-2018 14:14:18 ---> Running in 39ad5afb0625 build 16-Aug-2018 14:14:19 Get:1 http://security.ubuntu.com/ubuntu xenial-security InRelease [107 kB] build 16-Aug-2018 14:14:19 Get:2 http://archive.ubuntu.com/ubuntu xenial InRelease [247 kB] build 16-Aug-2018 14:14:20 Get:3 http://security.ubuntu.com/ubuntu xenial-security/universe Sources [88.1 kB] build 16-Aug-2018 14:14:20 Get:4 http://archive.ubuntu.com/ubuntu xenial-updates InRelease [109 kB] build 16-Aug-2018 14:14:20 Get:5 http://security.ubuntu.com/ubuntu xenial-security/main amd64 Packages [688 kB] build 16-Aug-2018 14:14:20 Get:6 http://archive.ubuntu.com/ubuntu xenial-backports InRelease [107 kB] build 16-Aug-2018 14:14:20 Get:7 http://archive.ubuntu.com/ubuntu xenial/universe Sources [9802 kB] build 16-Aug-2018 14:14:20 Get:8 http://security.ubuntu.com/ubuntu xenial-security/restricted amd64 Packages [12.7 kB] build 16-Aug-2018 14:14:20 Get:9 http://security.ubuntu.com/ubuntu xenial-security/universe amd64 Packages [465 kB] build 16-Aug-2018 14:14:20 Get:10 http://security.ubuntu.com/ubuntu xenial-security/multiverse amd64 Packages [3748 B] build 16-Aug-2018 14:14:21 Get:11 http://archive.ubuntu.com/ubuntu xenial/main amd64 Packages [1558 kB] build 16-Aug-2018 14:14:21 Get:12 http://archive.ubuntu.com/ubuntu xenial/restricted amd64 Packages [14.1 kB] build 16-Aug-2018 14:14:21 Get:13 http://archive.ubuntu.com/ubuntu xenial/universe amd64 Packages [9827 kB] build 16-Aug-2018 14:14:21 Get:14 http://archive.ubuntu.com/ubuntu xenial/multiverse amd64 Packages [176 kB] build 16-Aug-2018 14:14:21 Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/universe Sources [275 kB] build 16-Aug-2018 14:14:21 Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 Packages [1073 kB] build 16-Aug-2018 14:14:21 Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/restricted amd64 Packages [13.1 kB] build 16-Aug-2018 14:14:21 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 Packages [876 kB] build 16-Aug-2018 14:14:21 Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/multiverse amd64 Packages [18.8 kB] build 16-Aug-2018 14:14:21 Get:20 http://archive.ubuntu.com/ubuntu xenial-backports/main amd64 Packages [7343 B] build 16-Aug-2018 14:14:21 Get:21 http://archive.ubuntu.com/ubuntu xenial-backports/universe amd64 Packages [8086 B] build 16-Aug-2018 14:14:22 Fetched 25.5 MB in 3s (8032 kB/s) build 16-Aug-2018 14:14:23 Reading package lists... build 16-Aug-2018 14:14:24 Reading package lists... build 16-Aug-2018 14:14:24 Building dependency tree... build 16-Aug-2018 14:14:24 Reading state information... build 16-Aug-2018 14:14:24 python-pip is already the newest version (8.1.1-2ubuntu0.4). build 16-Aug-2018 14:14:24 The following additional packages will be installed: build 16-Aug-2018 14:14:24 apt apt-utils binutils bzip2 cpp cpp-5 cron dbus dh-python distro-info-data build 16-Aug-2018 14:14:24 dpkg-dev fakeroot fontconfig-config fonts-dejavu-core g++ g++-5 gcc gcc-5 build 16-Aug-2018 14:14:24 gcc-5-base gir1.2-glib-2.0 ifupdown iproute2 isc-dhcp-client isc-dhcp-common build 16-Aug-2018 14:14:24 iso-codes krb5-locales libaec0 libalgorithm-diff-perl build 16-Aug-2018 14:14:24 libalgorithm-diff-xs-perl libalgorithm-merge-perl libapt-inst2.0 build 16-Aug-2018 14:14:24 libapt-pkg5.0 libarmadillo6 libarpack2 libasan2 libasn1-8-heimdal libatm1 build 16-Aug-2018 14:14:24 libatomic1 libblas-common libblas3 libc-dev-bin libc6-dev libcap-ng0 build 16-Aug-2018 14:14:24 libcc1-0 libcilkrts5 libcurl3-gnutls libdap17v5 libdapclient6v5 libdbus-1-3 build 16-Aug-2018 14:14:24 libdbus-glib-1-2 libdns-export162 libdpkg-perl libepsilon1 libexpat1-dev build 16-Aug-2018 14:14:24 libfakeroot libfile-fcntllock-perl libfontconfig1 libfreetype6 libfreexl1 build 16-Aug-2018 14:14:24 libgcc-5-dev libgdal1i libgdbm3 libgeos-3.5.0 libgeos-c1v5 libgfortran3 build 16-Aug-2018 14:14:24 libgif7 libgirepository-1.0-1 libglib2.0-0 libglib2.0-data libgmp10 build 16-Aug-2018 14:14:24 libgnutls30 libgomp1 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal build 16-Aug-2018 14:14:24 libhdf4-0-alt libhdf5-10 libheimbase1-heimdal libheimntlm0-heimdal build 16-Aug-2018 14:14:24 libhogweed4 libhx509-5-heimdal libicu55 libidn11 libisc-export160 libisl15 build 16-Aug-2018 14:14:24 libitm1 libjasper1 libjbig0 libjpeg-turbo8 libjpeg8 libk5crypto3 build 16-Aug-2018 14:14:24 libkeyutils1 libkmlbase1 libkmldom1 libkmlengine1 libkrb5-26-heimdal build 16-Aug-2018 14:14:24 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap-2.4-2 liblsan0 build 16-Aug-2018 14:14:24 libltdl7 libminizip1 libmnl0 libmpc3 libmpdec2 libmpfr4 libmpx0 build 16-Aug-2018 14:14:24 libmysqlclient20 libnetcdf11 libnettle6 libodbc1 libogdi3.2 libopenjp2-7 build 16-Aug-2018 14:14:24 libp11-kit0 libperl5.22 libpng12-0 libpoppler58 libpq5 libproj9 build 16-Aug-2018 14:14:24 libpython-dev libpython2.7 libpython2.7-dev libpython3-stdlib build 16-Aug-2018 14:14:24 libpython3.5-minimal libpython3.5-stdlib libquadmath0 libroken18-heimdal build 16-Aug-2018 14:14:24 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libspatialite7 build 16-Aug-2018 14:14:24 libstdc++-5-dev libstdc++6 libsuperlu4 libsz2 libtasn1-6 libtiff5 libtsan0 build 16-Aug-2018 14:14:24 libubsan0 liburiparser1 libwebp5 libwebpmux1 libwind0-heimdal libxerces-c3.1 build 16-Aug-2018 14:14:24 libxml2 libxtables11 linux-libc-dev lsb-release make manpages manpages-dev build 16-Aug-2018 14:14:24 mysql-common netbase odbcinst odbcinst1debian2 patch perl perl-base build 16-Aug-2018 14:14:24 perl-modules-5.22 proj-bin proj-data python-apt-common python-decorator build 16-Aug-2018 14:14:24 python-imaging python-pil python2.7-dev python3 python3-apt python3-dbus build 16-Aug-2018 14:14:24 python3-gi python3-minimal python3-pycurl python3-software-properties build 16-Aug-2018 14:14:24 python3.5 python3.5-minimal rename sgml-base shared-mime-info ucf build 16-Aug-2018 14:14:24 unattended-upgrades xdg-user-dirs xml-core xz-utils build 16-Aug-2018 14:14:24 Suggested packages: build 16-Aug-2018 14:14:24 aptitude | synaptic | wajig apt-doc python-apt binutils-doc bzip2-doc build 16-Aug-2018 14:14:24 cpp-doc gcc-5-locales anacron logrotate checksecurity exim4 | postfix build 16-Aug-2018 14:14:24 | mail-transport-agent dbus-user-session | dbus-x11 debian-keyring build 16-Aug-2018 14:14:24 g++-multilib g++-5-multilib gcc-5-doc libstdc++6-5-dbg gcc-multilib autoconf build 16-Aug-2018 14:14:24 automake libtool flex bison gdb gcc-doc gcc-5-multilib libgcc1-dbg build 16-Aug-2018 14:14:24 libgomp1-dbg libitm1-dbg libatomic1-dbg libasan2-dbg liblsan0-dbg build 16-Aug-2018 14:14:24 libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx0-dbg libquadmath0-dbg ppp build 16-Aug-2018 14:14:24 rdnssd iproute2-doc resolvconf avahi-autoipd isc-dhcp-client-ddns apparmor build 16-Aug-2018 14:14:24 isoquery glibc-doc gnutls-bin krb5-doc krb5-user libhdf4-doc libhdf4-alt-dev build 16-Aug-2018 14:14:24 hdf4-tools libnetcdf4 libjasper-runtime liblcms2-utils libmyodbc build 16-Aug-2018 14:14:24 odbc-postgresql tdsodbc unixodbc-bin ogdi-bin poppler-data build 16-Aug-2018 14:14:24 libsasl2-modules-otp libsasl2-modules-ldap libsasl2-modules-sql build 16-Aug-2018 14:14:24 libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal build 16-Aug-2018 14:14:24 libstdc++-5-doc lsb make-doc man-browser ed diffutils-doc perl-doc build 16-Aug-2018 14:14:24 libterm-readline-gnu-perl | libterm-readline-perl-perl gfortran python-nose build 16-Aug-2018 14:14:24 python-numpy-dbg python-numpy-doc python-pil-doc python-pil-dbg build 16-Aug-2018 14:14:24 python-scipy-doc python3-doc python3-tk python3-venv python3-apt-dbg build 16-Aug-2018 14:14:24 python-apt-doc python-dbus-doc python3-dbus-dbg libcurl4-gnutls-dev build 16-Aug-2018 14:14:24 python-pycurl-doc python3-pycurl-dbg python3.5-venv python3.5-doc build 16-Aug-2018 14:14:24 binfmt-support sgml-base-doc bsd-mailx mail-transport-agent debhelper build 16-Aug-2018 14:14:24 The following NEW packages will be installed: build 16-Aug-2018 14:14:24 apt-utils binutils build-essential bzip2 cpp cpp-5 cron dbus dh-python build 16-Aug-2018 14:14:24 distro-info-data dpkg-dev fakeroot fontconfig-config fonts-dejavu-core g++ build 16-Aug-2018 14:14:24 g++-5 gcc gcc-5 gdal-bin gir1.2-glib-2.0 ifupdown iproute2 isc-dhcp-client build 16-Aug-2018 14:14:24 isc-dhcp-common iso-codes krb5-locales libaec0 libalgorithm-diff-perl build 16-Aug-2018 14:14:24 libalgorithm-diff-xs-perl libalgorithm-merge-perl libapt-inst2.0 build 16-Aug-2018 14:14:24 libarmadillo6 libarpack2 libasan2 libasn1-8-heimdal libatm1 libatomic1 build 16-Aug-2018 14:14:24 libblas-common libblas3 libc-dev-bin libc6-dev libcap-ng0 libcc1-0 build 16-Aug-2018 14:14:24 libcilkrts5 libcurl3-gnutls libdap17v5 libdapclient6v5 libdbus-1-3 build 16-Aug-2018 14:14:24 libdbus-glib-1-2 libdns-export162 libdpkg-perl libepsilon1 libexpat1-dev build 16-Aug-2018 14:14:24 libfakeroot libfile-fcntllock-perl libfontconfig1 libfreetype6 libfreexl1 build 16-Aug-2018 14:14:24 libgcc-5-dev libgdal1i libgdbm3 libgeos-3.5.0 libgeos-c1v5 libgfortran3 build 16-Aug-2018 14:14:24 libgif7 libgirepository-1.0-1 libglib2.0-0 libglib2.0-data libgmp10 build 16-Aug-2018 14:14:24 libgnutls30 libgomp1 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal build 16-Aug-2018 14:14:24 libhdf4-0-alt libhdf5-10 libheimbase1-heimdal libheimntlm0-heimdal build 16-Aug-2018 14:14:24 libhogweed4 libhx509-5-heimdal libicu55 libidn11 libisc-export160 libisl15 build 16-Aug-2018 14:14:24 libitm1 libjasper1 libjbig0 libjpeg-turbo8 libjpeg8 libk5crypto3 build 16-Aug-2018 14:14:24 libkeyutils1 libkmlbase1 libkmldom1 libkmlengine1 libkrb5-26-heimdal build 16-Aug-2018 14:14:24 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap-2.4-2 liblsan0 build 16-Aug-2018 14:14:24 libltdl7 libminizip1 libmnl0 libmpc3 libmpdec2 libmpfr4 libmpx0 build 16-Aug-2018 14:14:24 libmysqlclient20 libnetcdf11 libnettle6 libodbc1 libogdi3.2 libopenjp2-7 build 16-Aug-2018 14:14:24 libp11-kit0 libperl5.22 libpng12-0 libpoppler58 libpq5 libproj9 build 16-Aug-2018 14:14:24 libpython-dev libpython2.7 libpython2.7-dev libpython3-stdlib build 16-Aug-2018 14:14:24 libpython3.5-minimal libpython3.5-stdlib libquadmath0 libroken18-heimdal build 16-Aug-2018 14:14:24 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libspatialite7 build 16-Aug-2018 14:14:24 libstdc++-5-dev libsuperlu4 libsz2 libtasn1-6 libtiff5 libtsan0 libubsan0 build 16-Aug-2018 14:14:24 liburiparser1 libwebp5 libwebpmux1 libwind0-heimdal libxerces-c3.1 libxml2 build 16-Aug-2018 14:14:24 libxtables11 linux-libc-dev lsb-release make manpages manpages-dev build 16-Aug-2018 14:14:24 mysql-common netbase odbcinst odbcinst1debian2 patch perl perl-modules-5.22 build 16-Aug-2018 14:14:24 proj-bin proj-data python-apt-common python-decorator python-dev python-gdal build 16-Aug-2018 14:14:24 python-imaging python-numpy python-pil python-scipy python2.7-dev python3 build 16-Aug-2018 14:14:24 python3-apt python3-dbus python3-gi python3-minimal python3-pycurl build 16-Aug-2018 14:14:24 python3-software-properties python3.5 python3.5-minimal rename sgml-base build 16-Aug-2018 14:14:24 shared-mime-info software-properties-common ucf unattended-upgrades build 16-Aug-2018 14:14:24 xdg-user-dirs xml-core xz-utils build 16-Aug-2018 14:14:24 The following packages will be upgraded: build 16-Aug-2018 14:14:24 apt gcc-5-base libapt-pkg5.0 libstdc++6 perl-base build 16-Aug-2018 14:14:25 5 upgraded, 188 newly installed, 0 to remove and 16 not upgraded. build 16-Aug-2018 14:14:25 Need to get 134 MB of archives. build 16-Aug-2018 14:14:25 After this operation, 468 MB of additional disk space will be used. build 16-Aug-2018 14:14:25 Get:1 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 perl-base amd64 5.22.1-9ubuntu0.5 [1284 kB] build 16-Aug-2018 14:14:26 Get:2 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gcc-5-base amd64 5.4.0-6ubuntu1~16.04.10 [17.3 kB] build 16-Aug-2018 14:14:26 Get:3 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libstdc++6 amd64 5.4.0-6ubuntu1~16.04.10 [393 kB] build 16-Aug-2018 14:14:26 Get:4 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libapt-pkg5.0 amd64 1.2.27 [706 kB] build 16-Aug-2018 14:14:26 Get:5 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 apt amd64 1.2.27 [1042 kB] build 16-Aug-2018 14:14:26 Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 cron amd64 3.0pl1-128ubuntu2 [68.4 kB] build 16-Aug-2018 14:14:26 Get:7 http://archive.ubuntu.com/ubuntu xenial/main amd64 libatm1 amd64 1:2.5.1-1.5 [24.2 kB] build 16-Aug-2018 14:14:26 Get:8 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmnl0 amd64 1.0.3-5 [12.0 kB] build 16-Aug-2018 14:14:26 Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython3.5-minimal amd64 3.5.2-2ubuntu0~16.04.4 [523 kB] build 16-Aug-2018 14:14:26 Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python3.5-minimal amd64 3.5.2-2ubuntu0~16.04.4 [1597 kB] build 16-Aug-2018 14:14:26 Get:11 http://archive.ubuntu.com/ubuntu xenial/main amd64 python3-minimal amd64 3.5.1-3 [23.3 kB] build 16-Aug-2018 14:14:26 Get:12 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpdec2 amd64 2.4.2-1 [82.6 kB] build 16-Aug-2018 14:14:26 Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython3.5-stdlib amd64 3.5.2-2ubuntu0~16.04.4 [2132 kB] build 16-Aug-2018 14:14:26 Get:14 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python3.5 amd64 3.5.2-2ubuntu0~16.04.4 [165 kB] build 16-Aug-2018 14:14:26 Get:15 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpython3-stdlib amd64 3.5.1-3 [6818 B] build 16-Aug-2018 14:14:26 Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 dh-python all 2.20151103ubuntu1.1 [74.1 kB] build 16-Aug-2018 14:14:26 Get:17 http://archive.ubuntu.com/ubuntu xenial/main amd64 python3 amd64 3.5.1-3 [8710 B] build 16-Aug-2018 14:14:26 Get:18 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgdbm3 amd64 1.8.3-13.1 [16.9 kB] build 16-Aug-2018 14:14:26 Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libglib2.0-0 amd64 2.48.2-0ubuntu4 [1119 kB] build 16-Aug-2018 14:14:26 Get:20 http://archive.ubuntu.com/ubuntu xenial/main amd64 sgml-base all 1.26+nmu4ubuntu1 [12.5 kB] build 16-Aug-2018 14:14:26 Get:21 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libjpeg-turbo8 amd64 1.4.2-0ubuntu3.1 [111 kB] build 16-Aug-2018 14:14:26 Get:22 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblcms2-2 amd64 2.6-3ubuntu2 [137 kB] build 16-Aug-2018 14:14:26 Get:23 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas-common amd64 3.6.0-2ubuntu2 [5342 B] build 16-Aug-2018 14:14:26 Get:24 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas3 amd64 3.6.0-2ubuntu2 [147 kB] build 16-Aug-2018 14:14:26 Get:25 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libsuperlu4 amd64 4.3+dfsg-3 [158 kB] build 16-Aug-2018 14:14:26 Get:26 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 perl-modules-5.22 all 5.22.1-9ubuntu0.5 [2645 kB] build 16-Aug-2018 14:14:26 Get:27 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libperl5.22 amd64 5.22.1-9ubuntu0.5 [3396 kB] build 16-Aug-2018 14:14:26 Get:28 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 perl amd64 5.22.1-9ubuntu0.5 [238 kB] build 16-Aug-2018 14:14:27 Get:29 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjbig0 amd64 2.1-3.1 [26.6 kB] build 16-Aug-2018 14:14:27 Get:30 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgmp10 amd64 2:6.1.0+dfsg-2 [240 kB] build 16-Aug-2018 14:14:27 Get:31 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpfr4 amd64 3.1.4-1 [191 kB] build 16-Aug-2018 14:14:27 Get:32 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpc3 amd64 1.0.3-1 [39.7 kB] build 16-Aug-2018 14:14:27 Get:33 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libapt-inst2.0 amd64 1.2.27 [55.4 kB] build 16-Aug-2018 14:14:27 Get:34 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 apt-utils amd64 1.2.27 [196 kB] build 16-Aug-2018 14:14:27 Get:35 http://archive.ubuntu.com/ubuntu xenial/main amd64 bzip2 amd64 1.0.6-8 [32.7 kB] build 16-Aug-2018 14:14:27 Get:36 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 distro-info-data all 0.28ubuntu0.8 [4502 B] build 16-Aug-2018 14:14:27 Get:37 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 iproute2 amd64 4.3.0-1ubuntu3.16.04.3 [522 kB] build 16-Aug-2018 14:14:27 Get:38 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 ifupdown amd64 0.8.10ubuntu1.4 [54.9 kB] build 16-Aug-2018 14:14:27 Get:39 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libisc-export160 amd64 1:9.10.3.dfsg.P4-8ubuntu1.10 [153 kB] build 16-Aug-2018 14:14:27 Get:40 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdns-export162 amd64 1:9.10.3.dfsg.P4-8ubuntu1.10 [666 kB] build 16-Aug-2018 14:14:27 Get:41 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 isc-dhcp-client amd64 4.3.3-5ubuntu12.10 [224 kB] build 16-Aug-2018 14:14:27 Get:42 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 isc-dhcp-common amd64 4.3.3-5ubuntu12.10 [105 kB] build 16-Aug-2018 14:14:27 Get:43 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libnettle6 amd64 3.2-1ubuntu0.16.04.1 [93.5 kB] build 16-Aug-2018 14:14:27 Get:44 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhogweed4 amd64 3.2-1ubuntu0.16.04.1 [136 kB] build 16-Aug-2018 14:14:27 Get:45 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libidn11 amd64 1.32-3ubuntu1.2 [46.5 kB] build 16-Aug-2018 14:14:27 Get:46 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libp11-kit0 amd64 0.23.2-5~ubuntu16.04.1 [105 kB] build 16-Aug-2018 14:14:27 Get:47 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtasn1-6 amd64 4.7-3ubuntu0.16.04.3 [43.5 kB] build 16-Aug-2018 14:14:27 Get:48 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgnutls30 amd64 3.4.10-4ubuntu1.4 [548 kB] build 16-Aug-2018 14:14:27 Get:49 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpng12-0 amd64 1.2.54-1ubuntu1.1 [116 kB] build 16-Aug-2018 14:14:27 Get:50 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxtables11 amd64 1.6.0-2ubuntu3 [27.2 kB] build 16-Aug-2018 14:14:27 Get:51 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 lsb-release all 9.20160110ubuntu0.2 [11.8 kB] build 16-Aug-2018 14:14:27 Get:52 http://archive.ubuntu.com/ubuntu xenial/main amd64 netbase all 5.3 [12.9 kB] build 16-Aug-2018 14:14:27 Get:53 http://archive.ubuntu.com/ubuntu xenial/main amd64 ucf all 3.0036 [52.9 kB] build 16-Aug-2018 14:14:27 Get:54 http://archive.ubuntu.com/ubuntu xenial/main amd64 libcap-ng0 amd64 0.7.7-1 [10.9 kB] build 16-Aug-2018 14:14:27 Get:55 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdbus-1-3 amd64 1.10.6-1ubuntu3.3 [161 kB] build 16-Aug-2018 14:14:27 Get:56 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 dbus amd64 1.10.6-1ubuntu3.3 [142 kB] build 16-Aug-2018 14:14:27 Get:57 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgirepository-1.0-1 amd64 1.46.0-3ubuntu1 [88.3 kB] build 16-Aug-2018 14:14:27 Get:58 http://archive.ubuntu.com/ubuntu xenial/main amd64 gir1.2-glib-2.0 amd64 1.46.0-3ubuntu1 [127 kB] build 16-Aug-2018 14:14:27 Get:59 http://archive.ubuntu.com/ubuntu xenial/main amd64 iso-codes all 3.65-1 [2268 kB] build 16-Aug-2018 14:14:27 Get:60 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 krb5-locales all 1.13.2+dfsg-5ubuntu2 [13.2 kB] build 16-Aug-2018 14:14:27 Get:61 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libroken18-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [41.4 kB] build 16-Aug-2018 14:14:27 Get:62 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasn1-8-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [174 kB] build 16-Aug-2018 14:14:27 Get:63 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5support0 amd64 1.13.2+dfsg-5ubuntu2 [30.8 kB] build 16-Aug-2018 14:14:27 Get:64 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libk5crypto3 amd64 1.13.2+dfsg-5ubuntu2 [81.2 kB] build 16-Aug-2018 14:14:27 Get:65 http://archive.ubuntu.com/ubuntu xenial/main amd64 libkeyutils1 amd64 1.5.9-8ubuntu1 [9904 B] build 16-Aug-2018 14:14:27 Get:66 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5-3 amd64 1.13.2+dfsg-5ubuntu2 [273 kB] build 16-Aug-2018 14:14:27 Get:67 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgssapi-krb5-2 amd64 1.13.2+dfsg-5ubuntu2 [120 kB] build 16-Aug-2018 14:14:27 Get:68 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhcrypto4-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [85.0 kB] build 16-Aug-2018 14:14:27 Get:69 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libheimbase1-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [29.3 kB] build 16-Aug-2018 14:14:27 Get:70 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libwind0-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [47.8 kB] build 16-Aug-2018 14:14:27 Get:71 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhx509-5-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [107 kB] build 16-Aug-2018 14:14:27 Get:72 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5-26-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [202 kB] build 16-Aug-2018 14:14:27 Get:73 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libheimntlm0-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [15.1 kB] build 16-Aug-2018 14:14:27 Get:74 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgssapi3-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [96.1 kB] build 16-Aug-2018 14:14:27 Get:75 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsasl2-modules-db amd64 2.1.26.dfsg1-14build1 [14.5 kB] build 16-Aug-2018 14:14:27 Get:76 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsasl2-2 amd64 2.1.26.dfsg1-14build1 [48.7 kB] build 16-Aug-2018 14:14:27 Get:77 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libldap-2.4-2 amd64 2.4.42+dfsg-2ubuntu3.3 [161 kB] build 16-Aug-2018 14:14:27 Get:78 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d-1ubuntu0.1 [54.4 kB] build 16-Aug-2018 14:14:27 Get:79 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcurl3-gnutls amd64 7.47.0-1ubuntu2.8 [185 kB] build 16-Aug-2018 14:14:27 Get:80 http://archive.ubuntu.com/ubuntu xenial/main amd64 libdbus-glib-1-2 amd64 0.106-1 [67.1 kB] build 16-Aug-2018 14:14:27 Get:81 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libglib2.0-data all 2.48.2-0ubuntu4 [132 kB] build 16-Aug-2018 14:14:27 Get:82 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libicu55 amd64 55.1-7ubuntu0.4 [7646 kB] build 16-Aug-2018 14:14:28 Get:83 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsasl2-modules amd64 2.1.26.dfsg1-14build1 [47.5 kB] build 16-Aug-2018 14:14:28 Get:84 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libxml2 amd64 2.9.3+dfsg1-1ubuntu0.6 [697 kB] build 16-Aug-2018 14:14:28 Get:85 http://archive.ubuntu.com/ubuntu xenial/main amd64 manpages all 4.04-2 [1087 kB] build 16-Aug-2018 14:14:28 Get:86 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-apt-common all 1.1.0~beta1ubuntu0.16.04.2 [16.0 kB] build 16-Aug-2018 14:14:28 Get:87 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python3-apt amd64 1.1.0~beta1ubuntu0.16.04.2 [137 kB] build 16-Aug-2018 14:14:28 Get:88 http://archive.ubuntu.com/ubuntu xenial/main amd64 python3-dbus amd64 1.2.0-3 [83.1 kB] build 16-Aug-2018 14:14:28 Get:89 http://archive.ubuntu.com/ubuntu xenial/main amd64 python3-gi amd64 3.20.0-0ubuntu1 [153 kB] build 16-Aug-2018 14:14:28 Get:90 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 shared-mime-info amd64 1.5-2ubuntu0.2 [405 kB] build 16-Aug-2018 14:14:28 Get:91 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 xdg-user-dirs amd64 0.15-2ubuntu6.16.04.1 [61.8 kB] build 16-Aug-2018 14:14:28 Get:92 http://archive.ubuntu.com/ubuntu xenial/main amd64 xml-core all 0.13+nmu2 [23.3 kB] build 16-Aug-2018 14:14:28 Get:93 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 binutils amd64 2.26.1-1ubuntu1~16.04.6 [2311 kB] build 16-Aug-2018 14:14:28 Get:94 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc-dev-bin amd64 2.23-0ubuntu10 [68.7 kB] build 16-Aug-2018 14:14:28 Get:95 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 linux-libc-dev amd64 4.4.0-133.159 [861 kB] build 16-Aug-2018 14:14:28 Get:96 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc6-dev amd64 2.23-0ubuntu10 [2079 kB] build 16-Aug-2018 14:14:28 Get:97 http://archive.ubuntu.com/ubuntu xenial/main amd64 libisl15 amd64 0.16.1-1 [524 kB] build 16-Aug-2018 14:14:28 Get:98 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 cpp-5 amd64 5.4.0-6ubuntu1~16.04.10 [7671 kB] build 16-Aug-2018 14:14:28 Get:99 http://archive.ubuntu.com/ubuntu xenial/main amd64 cpp amd64 4:5.3.1-1ubuntu1 [27.7 kB] build 16-Aug-2018 14:14:28 Get:100 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcc1-0 amd64 5.4.0-6ubuntu1~16.04.10 [38.8 kB] build 16-Aug-2018 14:14:28 Get:101 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgomp1 amd64 5.4.0-6ubuntu1~16.04.10 [55.1 kB] build 16-Aug-2018 14:14:28 Get:102 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libitm1 amd64 5.4.0-6ubuntu1~16.04.10 [27.4 kB] build 16-Aug-2018 14:14:29 Get:103 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libatomic1 amd64 5.4.0-6ubuntu1~16.04.10 [8888 B] build 16-Aug-2018 14:14:29 Get:104 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasan2 amd64 5.4.0-6ubuntu1~16.04.10 [264 kB] build 16-Aug-2018 14:14:29 Get:105 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 liblsan0 amd64 5.4.0-6ubuntu1~16.04.10 [105 kB] build 16-Aug-2018 14:14:29 Get:106 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtsan0 amd64 5.4.0-6ubuntu1~16.04.10 [244 kB] build 16-Aug-2018 14:14:29 Get:107 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http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libstdc++-5-dev amd64 5.4.0-6ubuntu1~16.04.10 [1426 kB] build 16-Aug-2018 14:14:31 Get:115 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 g++-5 amd64 5.4.0-6ubuntu1~16.04.10 [8319 kB] build 16-Aug-2018 14:14:31 Get:116 http://archive.ubuntu.com/ubuntu xenial/main amd64 g++ amd64 4:5.3.1-1ubuntu1 [1504 B] build 16-Aug-2018 14:14:31 Get:117 http://archive.ubuntu.com/ubuntu xenial/main amd64 make amd64 4.1-6 [151 kB] build 16-Aug-2018 14:14:32 Get:118 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdpkg-perl all 1.18.4ubuntu1.4 [195 kB] build 16-Aug-2018 14:14:32 Get:119 http://archive.ubuntu.com/ubuntu xenial/main amd64 xz-utils amd64 5.1.1alpha+20120614-2ubuntu2 [78.8 kB] build 16-Aug-2018 14:14:32 Get:120 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 patch amd64 2.7.5-1ubuntu0.16.04.1 [90.5 kB] build 16-Aug-2018 14:14:32 Get:121 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 dpkg-dev all 1.18.4ubuntu1.4 [584 kB] build 16-Aug-2018 14:14:32 Get:122 http://archive.ubuntu.com/ubuntu xenial/main amd64 build-essential amd64 12.1ubuntu2 [4758 B] build 16-Aug-2018 14:14:32 Get:123 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfakeroot amd64 1.20.2-1ubuntu1 [25.5 kB] build 16-Aug-2018 14:14:32 Get:124 http://archive.ubuntu.com/ubuntu xenial/main amd64 fakeroot amd64 1.20.2-1ubuntu1 [61.8 kB] build 16-Aug-2018 14:14:32 Get:125 http://archive.ubuntu.com/ubuntu xenial/main amd64 fonts-dejavu-core all 2.35-1 [1039 kB] build 16-Aug-2018 14:14:32 Get:126 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 fontconfig-config all 2.11.94-0ubuntu1.1 [49.9 kB] build 16-Aug-2018 14:14:33 Get:127 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran3 amd64 5.4.0-6ubuntu1~16.04.10 [260 kB] build 16-Aug-2018 14:14:33 Get:128 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblapack3 amd64 3.6.0-2ubuntu2 [1938 kB] build 16-Aug-2018 14:14:33 Get:129 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libarpack2 amd64 3.3.0-1build2 [88.2 kB] build 16-Aug-2018 14:14:33 Get:130 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libarmadillo6 amd64 1:6.500.5+dfsg-1 [75.2 kB] build 16-Aug-2018 14:14:33 Get:131 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libdap17v5 amd64 3.15.1-7 [412 kB] build 16-Aug-2018 14:14:33 Get:132 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libdapclient6v5 amd64 3.15.1-7 [85.3 kB] build 16-Aug-2018 14:14:33 Get:133 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libepsilon1 amd64 0.9.2-3ubuntu1 [41.0 kB] build 16-Aug-2018 14:14:33 Get:134 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libfreexl1 amd64 1.0.2-1 [33.6 kB] build 16-Aug-2018 14:14:34 Get:135 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libgeos-3.5.0 amd64 3.5.0-1ubuntu2 [477 kB] build 16-Aug-2018 14:14:34 Get:136 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libgeos-c1v5 amd64 3.5.0-1ubuntu2 [52.4 kB] build 16-Aug-2018 14:14:34 Get:137 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgif7 amd64 5.1.4-0.3~16.04 [30.5 kB] build 16-Aug-2018 14:14:34 Get:138 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] build 16-Aug-2018 14:14:34 Get:139 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libhdf4-0-alt amd64 4.2.10-3.2 [264 kB] build 16-Aug-2018 14:14:34 Get:140 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libaec0 amd64 0.3.2-1 [18.0 kB] build 16-Aug-2018 14:14:34 Get:141 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libsz2 amd64 0.3.2-1 [5048 B] build 16-Aug-2018 14:14:34 Get:142 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libhdf5-10 amd64 1.8.16+docs-4ubuntu1 [995 kB] build 16-Aug-2018 14:14:34 Get:143 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libjasper1 amd64 1.900.1-debian1-2.4ubuntu1.2 [131 kB] build 16-Aug-2018 14:14:34 Get:144 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libminizip1 amd64 1.1-8 [20.3 kB] build 16-Aug-2018 14:14:35 Get:145 http://archive.ubuntu.com/ubuntu xenial/universe amd64 liburiparser1 amd64 0.8.4-1 [38.0 kB] build 16-Aug-2018 14:14:35 Get:146 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libkmlbase1 amd64 1.3.0-1 [43.9 kB] build 16-Aug-2018 14:14:35 Get:147 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libkmldom1 amd64 1.3.0-1 [175 kB] build 16-Aug-2018 14:14:35 Get:148 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libkmlengine1 amd64 1.3.0-1 [77.1 kB] build 16-Aug-2018 14:14:35 Get:149 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 mysql-common all 5.7.23-0ubuntu0.16.04.1 [15.4 kB] build 16-Aug-2018 14:14:35 Get:150 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmysqlclient20 amd64 5.7.23-0ubuntu0.16.04.1 [812 kB] build 16-Aug-2018 14:14:35 Get:151 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libnetcdf11 amd64 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6036 files and directories currently installed.) build 16-Aug-2018 14:14:42 Preparing to unpack .../perl-base_5.22.1-9ubuntu0.5_amd64.deb ... build 16-Aug-2018 14:14:42 Unpacking perl-base (5.22.1-9ubuntu0.5) over (5.22.1-9ubuntu0.3) ... build 16-Aug-2018 14:15:06 Setting up perl-base (5.22.1-9ubuntu0.5) ... build 16-Aug-2018 14:15:06 (Reading database ... build 16-Aug-2018 14:15:06 (Reading database ... 5% build 16-Aug-2018 14:15:06 (Reading database ... 10% build 16-Aug-2018 14:15:06 (Reading database ... 15% build 16-Aug-2018 14:15:06 (Reading database ... 20% build 16-Aug-2018 14:15:06 (Reading database ... 25% build 16-Aug-2018 14:15:06 (Reading database ... 30% build 16-Aug-2018 14:15:06 (Reading database ... 35% build 16-Aug-2018 14:15:06 (Reading database ... 40% build 16-Aug-2018 14:15:06 (Reading database ... 45% build 16-Aug-2018 14:15:06 (Reading database ... 50% build 16-Aug-2018 14:15:06 (Reading database ... 55% build 16-Aug-2018 14:15:06 (Reading database ... 60% build 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up cpp-5 (5.4.0-6ubuntu1~16.04.10) ... build 16-Aug-2018 14:19:27 Setting up cpp (4:5.3.1-1ubuntu1) ... build 16-Aug-2018 14:19:27 Setting up libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 16-Aug-2018 14:19:28 Setting up libgomp1:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 16-Aug-2018 14:19:28 Setting up libitm1:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 16-Aug-2018 14:19:28 Setting up libatomic1:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 16-Aug-2018 14:19:29 Setting up libasan2:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 16-Aug-2018 14:19:29 Setting up liblsan0:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 16-Aug-2018 14:19:29 Setting up libtsan0:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 16-Aug-2018 14:19:29 Setting up libubsan0:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 16-Aug-2018 14:19:29 Setting up libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 16-Aug-2018 14:19:29 Setting up libmpx0:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 16-Aug-2018 14:19:30 Setting up libquadmath0:amd64 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up libogdi3.2 (3.2.0~beta2-7.1build1) ... build 16-Aug-2018 14:19:40 Setting up libopenjp2-7:amd64 (2.1.0-2.1ubuntu0.1) ... build 16-Aug-2018 14:19:41 Setting up libfreetype6:amd64 (2.6.1-0.1ubuntu2.3) ... build 16-Aug-2018 14:19:41 Setting up libfontconfig1:amd64 (2.11.94-0ubuntu1.1) ... build 16-Aug-2018 14:19:41 Setting up libtiff5:amd64 (4.0.6-1ubuntu0.4) ... build 16-Aug-2018 14:19:41 Setting up libpoppler58:amd64 (0.41.0-0ubuntu1.7) ... build 16-Aug-2018 14:19:41 Setting up libpq5:amd64 (9.5.14-0ubuntu0.16.04) ... build 16-Aug-2018 14:19:41 Setting up libspatialite7:amd64 (4.3.0a-5) ... build 16-Aug-2018 14:19:41 Setting up libwebp5:amd64 (0.4.4-1) ... build 16-Aug-2018 14:19:42 Setting up libxerces-c3.1:amd64 (3.1.3+debian-1) ... build 16-Aug-2018 14:19:42 Setting up libalgorithm-diff-perl (1.19.03-1) ... build 16-Aug-2018 14:19:42 Setting up libalgorithm-diff-xs-perl (0.04-4build1) ... build 16-Aug-2018 14:19:42 Setting up libalgorithm-merge-perl (0.08-3) ... build 16-Aug-2018 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16-Aug-2018 14:19:53 Setting up rename (0.20-4) ... build 16-Aug-2018 14:19:53 update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode build 16-Aug-2018 14:19:53 Setting up proj-bin (4.9.2-2) ... build 16-Aug-2018 14:19:53 Setting up python-scipy (0.17.0-1) ... build 16-Aug-2018 14:19:56 Setting up python3 (3.5.1-3) ... build 16-Aug-2018 14:19:56 running python rtupdate hooks for python3.5... build 16-Aug-2018 14:19:56 running python post-rtupdate hooks for python3.5... build 16-Aug-2018 14:19:56 Setting up lsb-release (9.20160110ubuntu0.2) ... build 16-Aug-2018 14:19:56 Setting up python3-apt (1.1.0~beta1ubuntu0.16.04.2) ... build 16-Aug-2018 14:19:57 Setting up python3-dbus (1.2.0-3) ... build 16-Aug-2018 14:19:57 Setting up python3-gi (3.20.0-0ubuntu1) ... build 16-Aug-2018 14:19:57 Setting up odbcinst1debian2:amd64 (2.3.1-4.1) ... build 16-Aug-2018 14:19:57 Setting up libgdal1i (1.11.3+dfsg-3build2) ... build 16-Aug-2018 14:19:58 Setting up gdal-bin (1.11.3+dfsg-3build2) ... build 16-Aug-2018 14:19:58 Setting up python-gdal (1.11.3+dfsg-3build2) ... build 16-Aug-2018 14:19:59 Setting up python3-pycurl (7.43.0-1ubuntu1) ... build 16-Aug-2018 14:20:00 Setting up python3-software-properties (0.96.20.7) ... build 16-Aug-2018 14:20:00 Setting up software-properties-common (0.96.20.7) ... build 16-Aug-2018 14:20:00 Setting up unattended-upgrades (0.90ubuntu0.9) ... build 16-Aug-2018 14:20:01 debconf: unable to initialize frontend: Dialog build 16-Aug-2018 14:20:01 debconf: (TERM is not set, so the dialog frontend is not usable.) build 16-Aug-2018 14:20:01 debconf: falling back to frontend: Readline build 16-Aug-2018 14:20:01 build 16-Aug-2018 14:20:01 Creating config file /etc/apt/apt.conf.d/20auto-upgrades with new version build 16-Aug-2018 14:20:01 build 16-Aug-2018 14:20:01 Creating config file /etc/apt/apt.conf.d/50unattended-upgrades with new version build 16-Aug-2018 14:20:01 invoke-rc.d: could not determine current runlevel build 16-Aug-2018 14:20:01 invoke-rc.d: policy-rc.d denied execution of start. build 16-Aug-2018 14:20:01 Setting up dh-python (2.20151103ubuntu1.1) ... build 16-Aug-2018 14:20:02 Setting up odbcinst (2.3.1-4.1) ... build 16-Aug-2018 14:20:02 Processing triggers for systemd (229-4ubuntu21.2) ... build 16-Aug-2018 14:20:02 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 16-Aug-2018 14:20:02 Processing triggers for sgml-base (1.26+nmu4ubuntu1) ... build 16-Aug-2018 14:20:02 Processing triggers for dbus (1.10.6-1ubuntu3.3) ... build 16-Aug-2018 14:20:03 Official stable UbuntuGIS packages. build 16-Aug-2018 14:20:03 build 16-Aug-2018 14:20:03 build 16-Aug-2018 14:20:03 More info: https://launchpad.net/~ubuntugis/+archive/ubuntu/ppa build 16-Aug-2018 14:20:04 gpg: keyring `/tmp/tmp6jf53fzz/secring.gpg' created build 16-Aug-2018 14:20:04 gpg: keyring `/tmp/tmp6jf53fzz/pubring.gpg' created build 16-Aug-2018 14:20:04 gpg: requesting key 314DF160 from hkp server keyserver.ubuntu.com build 16-Aug-2018 14:20:04 gpg: /tmp/tmp6jf53fzz/trustdb.gpg: trustdb created build 16-Aug-2018 14:20:04 gpg: key 314DF160: public key "Launchpad ubuntugis-stable" imported build 16-Aug-2018 14:20:04 gpg: Total number processed: 1 build 16-Aug-2018 14:20:04 gpg: imported: 1 (RSA: 1) build 16-Aug-2018 14:20:04 OK build 16-Aug-2018 14:20:05 Collecting pip==9.0.3 build 16-Aug-2018 14:20:05 Downloading https://files.pythonhosted.org/packages/ac/95/a05b56bb975efa78d3557efa36acaf9cf5d2fd0ee0062060493687432e03/pip-9.0.3-py2.py3-none-any.whl (1.4MB) build 16-Aug-2018 14:20:05 Installing collected packages: pip build 16-Aug-2018 14:20:05 Found existing installation: pip 8.1.1 build 16-Aug-2018 14:20:05 Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr build 16-Aug-2018 14:20:06 Successfully installed pip-9.0.3 build 16-Aug-2018 14:20:06 You are using pip version 9.0.3, however version 18.0 is available. build 16-Aug-2018 14:20:06 You should consider upgrading via the 'pip install --upgrade pip' command. build 16-Aug-2018 14:20:06 Collecting cython>=0.23.4 (from -r /home/clowder/requirements.txt (line 1)) build 16-Aug-2018 14:20:07 Downloading https://files.pythonhosted.org/packages/9c/ae/be506d47f77fd31101a29eb740120f39050423f941cb0a461e4247330a47/Cython-0.28.5-cp27-cp27mu-manylinux1_x86_64.whl (3.3MB) build 16-Aug-2018 14:20:07 Requirement already satisfied: numpy>=1.10.4 in /usr/lib/python2.7/dist-packages (from -r /home/clowder/requirements.txt (line 2)) build 16-Aug-2018 14:20:07 Collecting shapely>=1.3.2 (from -r /home/clowder/requirements.txt (line 3)) build 16-Aug-2018 14:20:07 Downloading https://files.pythonhosted.org/packages/81/d1/b8e1b089a8ddd6df74be583d70373eac55c725c6197c115efbd3c3e1509f/Shapely-1.6.4.post2-cp27-cp27mu-manylinux1_x86_64.whl (1.4MB) build 16-Aug-2018 14:20:08 Collecting pygeoprocessing==0.2.2 (from -r /home/clowder/requirements.txt (line 4)) build 16-Aug-2018 14:20:08 Downloading https://files.pythonhosted.org/packages/5a/00/23b0d22a568308d8626b493f8da4780ac29c29d62a065f8795803f64148f/pygeoprocessing-0.2.2.zip (532kB) build 16-Aug-2018 14:20:08 Requirement already satisfied: pika>=0.10.0 in /usr/local/lib/python2.7/dist-packages (from -r /home/clowder/requirements.txt (line 5)) build 16-Aug-2018 14:20:08 Requirement already satisfied: requests>=2.9.1 in /usr/local/lib/python2.7/dist-packages (from -r /home/clowder/requirements.txt (line 6)) build 16-Aug-2018 14:20:08 Requirement already satisfied: scipy in /usr/lib/python2.7/dist-packages (from pygeoprocessing==0.2.2->-r /home/clowder/requirements.txt (line 4)) build 16-Aug-2018 14:20:08 Requirement already satisfied: gdal in /usr/lib/python2.7/dist-packages (from pygeoprocessing==0.2.2->-r /home/clowder/requirements.txt (line 4)) build 16-Aug-2018 14:20:08 Requirement already satisfied: certifi>=2017.4.17 in /usr/local/lib/python2.7/dist-packages (from requests>=2.9.1->-r /home/clowder/requirements.txt (line 6)) build 16-Aug-2018 14:20:08 Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /usr/local/lib/python2.7/dist-packages (from requests>=2.9.1->-r /home/clowder/requirements.txt (line 6)) build 16-Aug-2018 14:20:08 Requirement already satisfied: idna<2.7,>=2.5 in /usr/local/lib/python2.7/dist-packages (from requests>=2.9.1->-r /home/clowder/requirements.txt (line 6)) build 16-Aug-2018 14:20:08 Requirement already satisfied: urllib3<1.23,>=1.21.1 in /usr/local/lib/python2.7/dist-packages (from requests>=2.9.1->-r /home/clowder/requirements.txt (line 6)) build 16-Aug-2018 14:20:08 Installing collected packages: cython, shapely, pygeoprocessing build 16-Aug-2018 14:20:09 Running setup.py install for pygeoprocessing: started build 16-Aug-2018 14:20:34 Running setup.py install for pygeoprocessing: finished with status 'done' build 16-Aug-2018 14:20:34 Successfully installed cython-0.28.5 pygeoprocessing-0.2.2 shapely-1.6.4.post2 build 16-Aug-2018 14:20:34 You are using pip version 9.0.3, however version 18.0 is available. build 16-Aug-2018 14:20:34 You should consider upgrading via the 'pip install --upgrade pip' command. build 16-Aug-2018 14:20:43 Removing intermediate container 39ad5afb0625 build 16-Aug-2018 14:20:43 ---> 5912c92cc447 build 16-Aug-2018 14:20:43 Step 5/8 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 16-Aug-2018 14:20:43 ---> Running in 6f468d75e611 build 16-Aug-2018 14:20:44 Removing intermediate container 6f468d75e611 build 16-Aug-2018 14:20:44 ---> bc77a317de80 build 16-Aug-2018 14:20:44 Step 6/8 : CMD ["extractor"] build 16-Aug-2018 14:20:44 ---> Running in e406e91dfbde build 16-Aug-2018 14:20:44 Removing intermediate container e406e91dfbde build 16-Aug-2018 14:20:44 ---> 7eeb2119bfba build 16-Aug-2018 14:20:44 Step 7/8 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.geotiff.metadata" MAIN_SCRIPT="ncsa.image.geotiff.py" build 16-Aug-2018 14:20:44 ---> Running in 6962fa402908 build 16-Aug-2018 14:20:45 Removing intermediate container 6962fa402908 build 16-Aug-2018 14:20:45 ---> 4e9817ef6849 build 16-Aug-2018 14:20:45 Step 8/8 : COPY entrypoint.sh *.py extractor_info.json /home/clowder/ build 16-Aug-2018 14:20:45 ---> 5f7cdb588a85 build 16-Aug-2018 14:20:45 Successfully built 5f7cdb588a85 build 16-Aug-2018 14:20:45 Successfully tagged 10826:latest build 16-Aug-2018 14:20:46 Untagged: 10826:latest build 16-Aug-2018 14:20:46 Sending build context to Docker daemon 1.348MB build 16-Aug-2018 14:20:46 build 16-Aug-2018 14:20:46 Step 1/8 : FROM clowder/pyclowder:2 build 16-Aug-2018 14:20:46 ---> b27d04debca2 build 16-Aug-2018 14:20:46 Step 2/8 : MAINTAINER Yong Wook Kim build 16-Aug-2018 14:20:46 ---> Using cache build 16-Aug-2018 14:20:46 ---> 72a927114db4 build 16-Aug-2018 14:20:46 Step 3/8 : COPY requirements.txt /home/clowder/ build 16-Aug-2018 14:20:46 ---> 4a456361a7be build 16-Aug-2018 14:20:46 Step 4/8 : RUN apt-get update && apt-get install -y file gdal-bin python-gdal p7zip-full && pip install --upgrade pip==9.0.3 && pip install --upgrade -r /home/clowder/requirements.txt && rm -rf /var/lib/apt/lists/* build 16-Aug-2018 14:20:47 ---> Running in c7a5aa5a9319 build 16-Aug-2018 14:20:47 Get:1 http://security.ubuntu.com/ubuntu xenial-security InRelease [107 kB] build 16-Aug-2018 14:20:47 Get:2 http://archive.ubuntu.com/ubuntu xenial InRelease [247 kB] build 16-Aug-2018 14:20:48 Get:3 http://security.ubuntu.com/ubuntu xenial-security/universe Sources [88.1 kB] build 16-Aug-2018 14:20:48 Get:4 http://archive.ubuntu.com/ubuntu xenial-updates InRelease [109 kB] build 16-Aug-2018 14:20:48 Get:5 http://security.ubuntu.com/ubuntu xenial-security/main amd64 Packages [688 kB] build 16-Aug-2018 14:20:48 Get:6 http://archive.ubuntu.com/ubuntu xenial-backports InRelease [107 kB] build 16-Aug-2018 14:20:48 Get:7 http://archive.ubuntu.com/ubuntu xenial/universe Sources [9802 kB] build 16-Aug-2018 14:20:48 Get:8 http://security.ubuntu.com/ubuntu xenial-security/restricted amd64 Packages [12.7 kB] build 16-Aug-2018 14:20:48 Get:9 http://security.ubuntu.com/ubuntu xenial-security/universe amd64 Packages [465 kB] build 16-Aug-2018 14:20:48 Get:10 http://security.ubuntu.com/ubuntu xenial-security/multiverse amd64 Packages [3748 B] build 16-Aug-2018 14:20:49 Get:11 http://archive.ubuntu.com/ubuntu xenial/main amd64 Packages [1558 kB] build 16-Aug-2018 14:20:49 Get:12 http://archive.ubuntu.com/ubuntu xenial/restricted amd64 Packages [14.1 kB] build 16-Aug-2018 14:20:49 Get:13 http://archive.ubuntu.com/ubuntu xenial/universe amd64 Packages [9827 kB] build 16-Aug-2018 14:20:49 Get:14 http://archive.ubuntu.com/ubuntu xenial/multiverse amd64 Packages [176 kB] build 16-Aug-2018 14:20:49 Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/universe Sources [275 kB] build 16-Aug-2018 14:20:49 Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 Packages [1073 kB] build 16-Aug-2018 14:20:49 Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/restricted amd64 Packages [13.1 kB] build 16-Aug-2018 14:20:49 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 Packages [876 kB] build 16-Aug-2018 14:20:49 Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/multiverse amd64 Packages [18.8 kB] build 16-Aug-2018 14:20:49 Get:20 http://archive.ubuntu.com/ubuntu xenial-backports/main amd64 Packages [7343 B] build 16-Aug-2018 14:20:49 Get:21 http://archive.ubuntu.com/ubuntu xenial-backports/universe amd64 Packages [8086 B] build 16-Aug-2018 14:20:51 Fetched 25.5 MB in 3s (7394 kB/s) build 16-Aug-2018 14:20:51 Reading package lists... build 16-Aug-2018 14:20:52 Reading package lists... build 16-Aug-2018 14:20:53 Building dependency tree... build 16-Aug-2018 14:20:53 Reading state information... build 16-Aug-2018 14:20:53 The following additional packages will be installed: build 16-Aug-2018 14:20:53 fontconfig-config fonts-dejavu-core gcc-5-base krb5-locales libaec0 build 16-Aug-2018 14:20:53 libarmadillo6 libarpack2 libasn1-8-heimdal libblas-common libblas3 build 16-Aug-2018 14:20:53 libcurl3-gnutls libdap17v5 libdapclient6v5 libepsilon1 libfontconfig1 build 16-Aug-2018 14:20:53 libfreetype6 libfreexl1 libgdal1i libgeos-3.5.0 libgeos-c1v5 libgfortran3 build 16-Aug-2018 14:20:53 libgif7 libgmp10 libgnutls30 libgssapi-krb5-2 libgssapi3-heimdal build 16-Aug-2018 14:20:53 libhcrypto4-heimdal libhdf4-0-alt libhdf5-10 libheimbase1-heimdal build 16-Aug-2018 14:20:53 libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal libicu55 libidn11 build 16-Aug-2018 14:20:53 libjasper1 libjbig0 libjpeg-turbo8 libjpeg8 libk5crypto3 libkeyutils1 build 16-Aug-2018 14:20:53 libkmlbase1 libkmldom1 libkmlengine1 libkrb5-26-heimdal libkrb5-3 build 16-Aug-2018 14:20:53 libkrb5support0 liblapack3 liblcms2-2 libldap-2.4-2 libltdl7 libmagic1 build 16-Aug-2018 14:20:53 libminizip1 libmysqlclient20 libnetcdf11 libnettle6 libodbc1 libogdi3.2 build 16-Aug-2018 14:20:53 libopenjp2-7 libp11-kit0 libpng12-0 libpoppler58 libpq5 libproj9 build 16-Aug-2018 14:20:53 libquadmath0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules build 16-Aug-2018 14:20:53 libsasl2-modules-db libspatialite7 libstdc++6 libsuperlu4 libsz2 libtasn1-6 build 16-Aug-2018 14:20:53 libtiff5 liburiparser1 libwebp5 libwind0-heimdal libxerces-c3.1 libxml2 build 16-Aug-2018 14:20:53 mysql-common odbcinst odbcinst1debian2 proj-bin proj-data python-numpy build 16-Aug-2018 14:20:53 sgml-base ucf xml-core build 16-Aug-2018 14:20:53 Suggested packages: build 16-Aug-2018 14:20:53 gnutls-bin krb5-doc krb5-user libhdf4-doc libhdf4-alt-dev hdf4-tools build 16-Aug-2018 14:20:53 libnetcdf4 libjasper-runtime liblcms2-utils libmyodbc odbc-postgresql build 16-Aug-2018 14:20:53 tdsodbc unixodbc-bin ogdi-bin poppler-data libsasl2-modules-otp build 16-Aug-2018 14:20:53 libsasl2-modules-ldap libsasl2-modules-sql libsasl2-modules-gssapi-mit build 16-Aug-2018 14:20:53 | libsasl2-modules-gssapi-heimdal p7zip-rar gcc gfortran python-dev build 16-Aug-2018 14:20:53 python-nose python-numpy-dbg python-numpy-doc sgml-base-doc debhelper build 16-Aug-2018 14:20:53 The following NEW packages will be installed: build 16-Aug-2018 14:20:53 file fontconfig-config fonts-dejavu-core gdal-bin krb5-locales libaec0 build 16-Aug-2018 14:20:53 libarmadillo6 libarpack2 libasn1-8-heimdal libblas-common libblas3 build 16-Aug-2018 14:20:53 libcurl3-gnutls libdap17v5 libdapclient6v5 libepsilon1 libfontconfig1 build 16-Aug-2018 14:20:53 libfreetype6 libfreexl1 libgdal1i libgeos-3.5.0 libgeos-c1v5 libgfortran3 build 16-Aug-2018 14:20:53 libgif7 libgmp10 libgnutls30 libgssapi-krb5-2 libgssapi3-heimdal build 16-Aug-2018 14:20:53 libhcrypto4-heimdal libhdf4-0-alt libhdf5-10 libheimbase1-heimdal build 16-Aug-2018 14:20:53 libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal libicu55 libidn11 build 16-Aug-2018 14:20:53 libjasper1 libjbig0 libjpeg-turbo8 libjpeg8 libk5crypto3 libkeyutils1 build 16-Aug-2018 14:20:53 libkmlbase1 libkmldom1 libkmlengine1 libkrb5-26-heimdal libkrb5-3 build 16-Aug-2018 14:20:53 libkrb5support0 liblapack3 liblcms2-2 libldap-2.4-2 libltdl7 libmagic1 build 16-Aug-2018 14:20:53 libminizip1 libmysqlclient20 libnetcdf11 libnettle6 libodbc1 libogdi3.2 build 16-Aug-2018 14:20:53 libopenjp2-7 libp11-kit0 libpng12-0 libpoppler58 libpq5 libproj9 build 16-Aug-2018 14:20:53 libquadmath0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules build 16-Aug-2018 14:20:53 libsasl2-modules-db libspatialite7 libsuperlu4 libsz2 libtasn1-6 libtiff5 build 16-Aug-2018 14:20:53 liburiparser1 libwebp5 libwind0-heimdal libxerces-c3.1 libxml2 mysql-common build 16-Aug-2018 14:20:53 odbcinst odbcinst1debian2 p7zip-full proj-bin proj-data python-gdal build 16-Aug-2018 14:20:53 python-numpy sgml-base ucf xml-core build 16-Aug-2018 14:20:53 The following packages will be upgraded: build 16-Aug-2018 14:20:53 gcc-5-base libstdc++6 build 16-Aug-2018 14:20:53 2 upgraded, 92 newly installed, 0 to remove and 19 not upgraded. build 16-Aug-2018 14:20:53 Need to get 36.2 MB of archives. build 16-Aug-2018 14:20:53 After this operation, 146 MB of additional disk space will be used. build 16-Aug-2018 14:20:53 Get:1 http://archive.ubuntu.com/ubuntu xenial/main amd64 sgml-base all 1.26+nmu4ubuntu1 [12.5 kB] build 16-Aug-2018 14:20:53 Get:2 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libjpeg-turbo8 amd64 1.4.2-0ubuntu3.1 [111 kB] build 16-Aug-2018 14:20:54 Get:3 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblcms2-2 amd64 2.6-3ubuntu2 [137 kB] build 16-Aug-2018 14:20:54 Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas-common amd64 3.6.0-2ubuntu2 [5342 B] build 16-Aug-2018 14:20:54 Get:5 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas3 amd64 3.6.0-2ubuntu2 [147 kB] build 16-Aug-2018 14:20:54 Get:6 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libsuperlu4 amd64 4.3+dfsg-3 [158 kB] build 16-Aug-2018 14:20:54 Get:7 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjbig0 amd64 2.1-3.1 [26.6 kB] build 16-Aug-2018 14:20:54 Get:8 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gcc-5-base amd64 5.4.0-6ubuntu1~16.04.10 [17.3 kB] build 16-Aug-2018 14:20:54 Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libstdc++6 amd64 5.4.0-6ubuntu1~16.04.10 [393 kB] build 16-Aug-2018 14:20:54 Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmagic1 amd64 1:5.25-2ubuntu1.1 [216 kB] build 16-Aug-2018 14:20:54 Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 file amd64 1:5.25-2ubuntu1.1 [21.2 kB] build 16-Aug-2018 14:20:54 Get:12 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgmp10 amd64 2:6.1.0+dfsg-2 [240 kB] build 16-Aug-2018 14:20:54 Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libnettle6 amd64 3.2-1ubuntu0.16.04.1 [93.5 kB] build 16-Aug-2018 14:20:54 Get:14 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhogweed4 amd64 3.2-1ubuntu0.16.04.1 [136 kB] build 16-Aug-2018 14:20:54 Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libidn11 amd64 1.32-3ubuntu1.2 [46.5 kB] build 16-Aug-2018 14:20:54 Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libp11-kit0 amd64 0.23.2-5~ubuntu16.04.1 [105 kB] build 16-Aug-2018 14:20:54 Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtasn1-6 amd64 4.7-3ubuntu0.16.04.3 [43.5 kB] build 16-Aug-2018 14:20:54 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgnutls30 amd64 3.4.10-4ubuntu1.4 [548 kB] build 16-Aug-2018 14:20:54 Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpng12-0 amd64 1.2.54-1ubuntu1.1 [116 kB] build 16-Aug-2018 14:20:54 Get:20 http://archive.ubuntu.com/ubuntu xenial/main amd64 ucf all 3.0036 [52.9 kB] build 16-Aug-2018 14:20:54 Get:21 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 krb5-locales all 1.13.2+dfsg-5ubuntu2 [13.2 kB] build 16-Aug-2018 14:20:54 Get:22 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libroken18-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [41.4 kB] build 16-Aug-2018 14:20:54 Get:23 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasn1-8-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [174 kB] build 16-Aug-2018 14:20:54 Get:24 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5support0 amd64 1.13.2+dfsg-5ubuntu2 [30.8 kB] build 16-Aug-2018 14:20:54 Get:25 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libk5crypto3 amd64 1.13.2+dfsg-5ubuntu2 [81.2 kB] build 16-Aug-2018 14:20:54 Get:26 http://archive.ubuntu.com/ubuntu xenial/main amd64 libkeyutils1 amd64 1.5.9-8ubuntu1 [9904 B] build 16-Aug-2018 14:20:54 Get:27 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5-3 amd64 1.13.2+dfsg-5ubuntu2 [273 kB] build 16-Aug-2018 14:20:54 Get:28 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgssapi-krb5-2 amd64 1.13.2+dfsg-5ubuntu2 [120 kB] build 16-Aug-2018 14:20:54 Get:29 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhcrypto4-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [85.0 kB] build 16-Aug-2018 14:20:54 Get:30 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libheimbase1-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [29.3 kB] build 16-Aug-2018 14:20:54 Get:31 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libwind0-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [47.8 kB] build 16-Aug-2018 14:20:54 Get:32 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhx509-5-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [107 kB] build 16-Aug-2018 14:20:54 Get:33 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5-26-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [202 kB] build 16-Aug-2018 14:20:54 Get:34 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libheimntlm0-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [15.1 kB] build 16-Aug-2018 14:20:54 Get:35 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgssapi3-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [96.1 kB] build 16-Aug-2018 14:20:54 Get:36 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsasl2-modules-db amd64 2.1.26.dfsg1-14build1 [14.5 kB] build 16-Aug-2018 14:20:54 Get:37 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsasl2-2 amd64 2.1.26.dfsg1-14build1 [48.7 kB] build 16-Aug-2018 14:20:54 Get:38 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libldap-2.4-2 amd64 2.4.42+dfsg-2ubuntu3.3 [161 kB] build 16-Aug-2018 14:20:54 Get:39 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d-1ubuntu0.1 [54.4 kB] build 16-Aug-2018 14:20:54 Get:40 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcurl3-gnutls amd64 7.47.0-1ubuntu2.8 [185 kB] build 16-Aug-2018 14:20:54 Get:41 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libicu55 amd64 55.1-7ubuntu0.4 [7646 kB] build 16-Aug-2018 14:20:55 Get:42 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsasl2-modules amd64 2.1.26.dfsg1-14build1 [47.5 kB] build 16-Aug-2018 14:20:55 Get:43 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libxml2 amd64 2.9.3+dfsg1-1ubuntu0.6 [697 kB] build 16-Aug-2018 14:20:55 Get:44 http://archive.ubuntu.com/ubuntu xenial/main amd64 xml-core all 0.13+nmu2 [23.3 kB] build 16-Aug-2018 14:20:55 Get:45 http://archive.ubuntu.com/ubuntu xenial/main amd64 fonts-dejavu-core all 2.35-1 [1039 kB] build 16-Aug-2018 14:20:55 Get:46 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 fontconfig-config all 2.11.94-0ubuntu1.1 [49.9 kB] build 16-Aug-2018 14:20:55 Get:47 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libquadmath0 amd64 5.4.0-6ubuntu1~16.04.10 [131 kB] build 16-Aug-2018 14:20:55 Get:48 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran3 amd64 5.4.0-6ubuntu1~16.04.10 [260 kB] build 16-Aug-2018 14:20:55 Get:49 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblapack3 amd64 3.6.0-2ubuntu2 [1938 kB] build 16-Aug-2018 14:20:55 Get:50 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libarpack2 amd64 3.3.0-1build2 [88.2 kB] build 16-Aug-2018 14:20:55 Get:51 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libarmadillo6 amd64 1:6.500.5+dfsg-1 [75.2 kB] build 16-Aug-2018 14:20:55 Get:52 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libdap17v5 amd64 3.15.1-7 [412 kB] build 16-Aug-2018 14:20:55 Get:53 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libdapclient6v5 amd64 3.15.1-7 [85.3 kB] build 16-Aug-2018 14:20:55 Get:54 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libepsilon1 amd64 0.9.2-3ubuntu1 [41.0 kB] build 16-Aug-2018 14:20:55 Get:55 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libfreexl1 amd64 1.0.2-1 [33.6 kB] build 16-Aug-2018 14:20:55 Get:56 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libxerces-c3.1 amd64 3.1.3+debian-1 [842 kB] build 16-Aug-2018 14:20:56 Get:87 http://archive.ubuntu.com/ubuntu xenial/main amd64 odbcinst amd64 2.3.1-4.1 [13.1 kB] build 16-Aug-2018 14:20:56 Get:88 http://archive.ubuntu.com/ubuntu xenial/main amd64 odbcinst1debian2 amd64 2.3.1-4.1 [41.1 kB] build 16-Aug-2018 14:20:56 Get:89 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libgdal1i amd64 1.11.3+dfsg-3build2 [4013 kB] build 16-Aug-2018 14:20:56 Get:90 http://archive.ubuntu.com/ubuntu xenial/universe amd64 gdal-bin amd64 1.11.3+dfsg-3build2 [226 kB] build 16-Aug-2018 14:20:56 Get:91 http://archive.ubuntu.com/ubuntu xenial/universe amd64 p7zip-full amd64 9.20.1~dfsg.1-4.2 [919 kB] build 16-Aug-2018 14:20:56 Get:92 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-numpy amd64 1:1.11.0-1ubuntu1 [1763 kB] build 16-Aug-2018 14:20:56 Get:93 http://archive.ubuntu.com/ubuntu xenial/universe amd64 python-gdal amd64 1.11.3+dfsg-3build2 [423 kB] build 16-Aug-2018 14:20:56 Get:94 http://archive.ubuntu.com/ubuntu xenial/universe amd64 proj-bin amd64 4.9.2-2 [31.3 kB] build 16-Aug-2018 14:20:56 debconf: delaying package configuration, since apt-utils is not installed build 16-Aug-2018 14:20:56 Fetched 36.2 MB in 2s (12.9 MB/s) build 16-Aug-2018 14:20:57 Selecting previously unselected package sgml-base. build 16-Aug-2018 14:20:57 (Reading database ... build 16-Aug-2018 14:20:57 (Reading database ... 5% build 16-Aug-2018 14:20:57 (Reading database ... 10% build 16-Aug-2018 14:20:57 (Reading database ... 15% build 16-Aug-2018 14:20:57 (Reading database ... 20% build 16-Aug-2018 14:20:57 (Reading database ... 25% build 16-Aug-2018 14:20:57 (Reading database ... 30% build 16-Aug-2018 14:20:57 (Reading database ... 35% build 16-Aug-2018 14:20:57 (Reading database ... 40% build 16-Aug-2018 14:20:57 (Reading database ... 45% build 16-Aug-2018 14:20:57 (Reading database ... 50% build 16-Aug-2018 14:20:57 (Reading database ... 55% build 16-Aug-2018 14:20:57 (Reading 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16-Aug-2018 14:21:58 Setting up libblas-common (3.6.0-2ubuntu2) ... build 16-Aug-2018 14:21:58 Setting up libblas3 (3.6.0-2ubuntu2) ... build 16-Aug-2018 14:21:58 update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode build 16-Aug-2018 14:21:59 Setting up libsuperlu4:amd64 (4.3+dfsg-3) ... build 16-Aug-2018 14:21:59 Setting up libjbig0:amd64 (2.1-3.1) ... build 16-Aug-2018 14:21:59 Setting up libmagic1:amd64 (1:5.25-2ubuntu1.1) ... build 16-Aug-2018 14:21:59 Setting up file (1:5.25-2ubuntu1.1) ... build 16-Aug-2018 14:21:59 Setting up libgmp10:amd64 (2:6.1.0+dfsg-2) ... build 16-Aug-2018 14:21:59 Setting up libnettle6:amd64 (3.2-1ubuntu0.16.04.1) ... build 16-Aug-2018 14:22:00 Setting up libhogweed4:amd64 (3.2-1ubuntu0.16.04.1) ... build 16-Aug-2018 14:22:00 Setting up libidn11:amd64 (1.32-3ubuntu1.2) ... build 16-Aug-2018 14:22:00 Setting up libp11-kit0:amd64 (0.23.2-5~ubuntu16.04.1) ... build 16-Aug-2018 14:22:00 Setting up libtasn1-6:amd64 (4.7-3ubuntu0.16.04.3) ... build 16-Aug-2018 14:22:00 Setting up libgnutls30:amd64 (3.4.10-4ubuntu1.4) ... build 16-Aug-2018 14:22:01 Setting up libpng12-0:amd64 (1.2.54-1ubuntu1.1) ... build 16-Aug-2018 14:22:01 Setting up ucf (3.0036) ... build 16-Aug-2018 14:22:02 debconf: unable to initialize frontend: Dialog build 16-Aug-2018 14:22:02 debconf: (TERM is not set, so the dialog frontend is not usable.) build 16-Aug-2018 14:22:02 debconf: falling back to frontend: Readline build 16-Aug-2018 14:22:02 debconf: unable to initialize frontend: Readline build 16-Aug-2018 14:22:02 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) build 16-Aug-2018 14:22:02 debconf: falling back to frontend: Teletype build 16-Aug-2018 14:22:02 Setting up krb5-locales (1.13.2+dfsg-5ubuntu2) ... build 16-Aug-2018 14:22:02 Setting up libroken18-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 16-Aug-2018 14:22:02 Setting up libasn1-8-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 16-Aug-2018 14:22:02 Setting up libkrb5support0:amd64 (1.13.2+dfsg-5ubuntu2) ... build 16-Aug-2018 14:22:02 Setting up libk5crypto3:amd64 (1.13.2+dfsg-5ubuntu2) ... build 16-Aug-2018 14:22:02 Setting up libkeyutils1:amd64 (1.5.9-8ubuntu1) ... build 16-Aug-2018 14:22:02 Setting up libkrb5-3:amd64 (1.13.2+dfsg-5ubuntu2) ... build 16-Aug-2018 14:22:03 Setting up libgssapi-krb5-2:amd64 (1.13.2+dfsg-5ubuntu2) ... build 16-Aug-2018 14:22:03 Setting up libhcrypto4-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 16-Aug-2018 14:22:03 Setting up libheimbase1-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 16-Aug-2018 14:22:03 Setting up libwind0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 16-Aug-2018 14:22:03 Setting up libhx509-5-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 16-Aug-2018 14:22:03 Setting up libkrb5-26-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 16-Aug-2018 14:22:03 Setting up libheimntlm0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 16-Aug-2018 14:22:04 Setting up libgssapi3-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 16-Aug-2018 14:22:04 Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-14build1) ... build 16-Aug-2018 14:22:04 Setting up libsasl2-2:amd64 (2.1.26.dfsg1-14build1) ... build 16-Aug-2018 14:22:04 Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2ubuntu3.3) ... build 16-Aug-2018 14:22:04 Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d-1ubuntu0.1) ... build 16-Aug-2018 14:22:04 Setting up libcurl3-gnutls:amd64 (7.47.0-1ubuntu2.8) ... build 16-Aug-2018 14:22:04 Setting up libicu55:amd64 (55.1-7ubuntu0.4) ... build 16-Aug-2018 14:22:05 Setting up libsasl2-modules:amd64 (2.1.26.dfsg1-14build1) ... build 16-Aug-2018 14:22:05 Setting up libxml2:amd64 (2.9.3+dfsg1-1ubuntu0.6) ... build 16-Aug-2018 14:22:05 Setting up xml-core (0.13+nmu2) ... build 16-Aug-2018 14:22:05 Setting up fonts-dejavu-core (2.35-1) ... build 16-Aug-2018 14:22:06 Setting up fontconfig-config (2.11.94-0ubuntu1.1) ... build 16-Aug-2018 14:22:08 Setting up libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 16-Aug-2018 14:22:08 Setting up libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 16-Aug-2018 14:22:09 Setting up liblapack3 (3.6.0-2ubuntu2) ... build 16-Aug-2018 14:22:09 update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode build 16-Aug-2018 14:22:09 Setting up libarpack2 (3.3.0-1build2) ... build 16-Aug-2018 14:22:09 Setting up libarmadillo6 (1:6.500.5+dfsg-1) ... build 16-Aug-2018 14:22:09 Setting up libdap17v5:amd64 (3.15.1-7) ... build 16-Aug-2018 14:22:09 Setting up libdapclient6v5:amd64 (3.15.1-7) ... build 16-Aug-2018 14:22:09 Setting up libepsilon1:amd64 (0.9.2-3ubuntu1) ... build 16-Aug-2018 14:22:09 Setting up libfreexl1:amd64 (1.0.2-1) ... build 16-Aug-2018 14:22:10 Setting up libgeos-3.5.0 (3.5.0-1ubuntu2) ... build 16-Aug-2018 14:22:10 Setting up libgeos-c1v5 (3.5.0-1ubuntu2) ... build 16-Aug-2018 14:22:10 Setting up libgif7:amd64 (5.1.4-0.3~16.04) ... build 16-Aug-2018 14:22:10 Setting up libjpeg8:amd64 (8c-2ubuntu8) ... build 16-Aug-2018 14:22:10 Setting up libhdf4-0-alt (4.2.10-3.2) ... build 16-Aug-2018 14:22:10 Setting up libaec0:amd64 (0.3.2-1) ... build 16-Aug-2018 14:22:10 Setting up libsz2:amd64 (0.3.2-1) ... build 16-Aug-2018 14:22:11 Setting up libhdf5-10:amd64 (1.8.16+docs-4ubuntu1) ... build 16-Aug-2018 14:22:11 Setting up libjasper1:amd64 (1.900.1-debian1-2.4ubuntu1.2) ... build 16-Aug-2018 14:22:11 Setting up libminizip1:amd64 (1.1-8) ... build 16-Aug-2018 14:22:11 Setting up liburiparser1:amd64 (0.8.4-1) ... build 16-Aug-2018 14:22:12 Setting up libkmlbase1:amd64 (1.3.0-1) ... build 16-Aug-2018 14:22:12 Setting up libkmldom1:amd64 (1.3.0-1) ... build 16-Aug-2018 14:22:12 Setting up libkmlengine1:amd64 (1.3.0-1) ... build 16-Aug-2018 14:22:12 Setting up mysql-common (5.7.23-0ubuntu0.16.04.1) ... build 16-Aug-2018 14:22:13 update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode build 16-Aug-2018 14:22:13 Setting up libmysqlclient20:amd64 (5.7.23-0ubuntu0.16.04.1) ... build 16-Aug-2018 14:22:13 Setting up libnetcdf11 (1:4.4.0-2) ... build 16-Aug-2018 14:22:13 Setting up libltdl7:amd64 (2.4.6-0.1) ... build 16-Aug-2018 14:22:13 Setting up libodbc1:amd64 (2.3.1-4.1) ... build 16-Aug-2018 14:22:13 Setting up proj-data (4.9.2-2) ... build 16-Aug-2018 14:22:13 Setting up libproj9 (4.9.2-2) ... build 16-Aug-2018 14:22:14 Setting up libogdi3.2 (3.2.0~beta2-7.1build1) ... build 16-Aug-2018 14:22:14 Setting up libopenjp2-7:amd64 (2.1.0-2.1ubuntu0.1) ... build 16-Aug-2018 14:22:14 Setting up libfreetype6:amd64 (2.6.1-0.1ubuntu2.3) ... build 16-Aug-2018 14:22:14 Setting up libfontconfig1:amd64 (2.11.94-0ubuntu1.1) ... build 16-Aug-2018 14:22:14 Setting up libtiff5:amd64 (4.0.6-1ubuntu0.4) ... build 16-Aug-2018 14:22:14 Setting up libpoppler58:amd64 (0.41.0-0ubuntu1.7) ... build 16-Aug-2018 14:22:14 Setting up libpq5:amd64 (9.5.14-0ubuntu0.16.04) ... build 16-Aug-2018 14:22:15 Setting up libspatialite7:amd64 (4.3.0a-5) ... build 16-Aug-2018 14:22:15 Setting up libwebp5:amd64 (0.4.4-1) ... build 16-Aug-2018 14:22:15 Setting up libxerces-c3.1:amd64 (3.1.3+debian-1) ... build 16-Aug-2018 14:22:15 Setting up p7zip-full (9.20.1~dfsg.1-4.2) ... build 16-Aug-2018 14:22:15 Setting up python-numpy (1:1.11.0-1ubuntu1) ... build 16-Aug-2018 14:22:17 Setting up proj-bin (4.9.2-2) ... build 16-Aug-2018 14:22:17 Setting up odbcinst1debian2:amd64 (2.3.1-4.1) ... build 16-Aug-2018 14:22:18 Setting up libgdal1i (1.11.3+dfsg-3build2) ... build 16-Aug-2018 14:22:18 Setting up gdal-bin (1.11.3+dfsg-3build2) ... build 16-Aug-2018 14:22:18 Setting up python-gdal (1.11.3+dfsg-3build2) ... build 16-Aug-2018 14:22:19 Setting up odbcinst (2.3.1-4.1) ... build 16-Aug-2018 14:22:19 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 16-Aug-2018 14:22:19 Processing triggers for sgml-base (1.26+nmu4ubuntu1) ... build 16-Aug-2018 14:22:20 Collecting pip==9.0.3 build 16-Aug-2018 14:22:20 Downloading https://files.pythonhosted.org/packages/ac/95/a05b56bb975efa78d3557efa36acaf9cf5d2fd0ee0062060493687432e03/pip-9.0.3-py2.py3-none-any.whl (1.4MB) build 16-Aug-2018 14:22:21 Installing collected packages: pip build 16-Aug-2018 14:22:21 Found existing installation: pip 8.1.1 build 16-Aug-2018 14:22:21 Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr build 16-Aug-2018 14:22:21 Successfully installed pip-9.0.3 build 16-Aug-2018 14:22:21 You are using pip version 9.0.3, however version 18.0 is available. build 16-Aug-2018 14:22:21 You should consider upgrading via the 'pip install --upgrade pip' command. build 16-Aug-2018 14:22:22 Collecting gsconfig==1.0.3 (from -r /home/clowder/requirements.txt (line 1)) build 16-Aug-2018 14:22:22 Downloading https://files.pythonhosted.org/packages/85/a9/ec6bf3d2de4763a826d6b2b569d7e1b22e8c660c3bd110bb22ea060fad39/gsconfig-1.0.3.tar.gz build 16-Aug-2018 14:22:22 Collecting pika==0.10.0 (from -r /home/clowder/requirements.txt (line 2)) build 16-Aug-2018 14:22:22 Downloading https://files.pythonhosted.org/packages/26/12/400cf0aca6b1ecf1f00dcd89b246e7a4c8558677304ba067167b8167e714/pika-0.10.0-py2.py3-none-any.whl (92kB) build 16-Aug-2018 14:22:22 Collecting requests==2.10.0 (from -r /home/clowder/requirements.txt (line 3)) build 16-Aug-2018 14:22:22 Downloading https://files.pythonhosted.org/packages/99/b4/63d99ba8e189c47d906b43bae18af4396e336f2b1bfec86af31efe2d2cb8/requests-2.10.0-py2.py3-none-any.whl (506kB) build 16-Aug-2018 14:22:22 Collecting wheel==0.24.0 (from -r /home/clowder/requirements.txt (line 4)) build 16-Aug-2018 14:22:22 Downloading https://files.pythonhosted.org/packages/e8/14/eaaac12b0432c984a27ad0050a5a0bedc6135df35a0f5f1f35228faf12d4/wheel-0.24.0-py2.py3-none-any.whl (63kB) build 16-Aug-2018 14:22:22 Collecting httplib2>=0.7.4 (from gsconfig==1.0.3->-r /home/clowder/requirements.txt (line 1)) build 16-Aug-2018 14:22:22 Downloading https://files.pythonhosted.org/packages/fd/ce/aa4a385e3e9fd351737fd2b07edaa56e7a730448465aceda6b35086a0d9b/httplib2-0.11.3.tar.gz (215kB) build 16-Aug-2018 14:22:23 Collecting gisdata==0.5.4 (from gsconfig==1.0.3->-r /home/clowder/requirements.txt (line 1)) build 16-Aug-2018 14:22:23 Downloading https://files.pythonhosted.org/packages/2a/e3/bd15b7a5d0cdd8d316b051ac3e2ec180bd09d9a144e6df35733cbdc9ca82/gisdata-0.5.4.tar.gz (1.2MB) build 16-Aug-2018 14:22:23 Installing collected packages: httplib2, gisdata, gsconfig, pika, requests, wheel build 16-Aug-2018 14:22:23 Running setup.py install for httplib2: started build 16-Aug-2018 14:22:23 Running setup.py install for httplib2: finished with status 'done' build 16-Aug-2018 14:22:23 Running setup.py install for gisdata: started build 16-Aug-2018 14:22:24 Running setup.py install for gisdata: finished with status 'done' build 16-Aug-2018 14:22:24 Running setup.py install for gsconfig: started build 16-Aug-2018 14:22:24 Running setup.py install for gsconfig: finished with status 'done' build 16-Aug-2018 14:22:24 Found existing installation: pika 0.11.2 build 16-Aug-2018 14:22:24 Uninstalling pika-0.11.2: build 16-Aug-2018 14:22:26 Successfully uninstalled pika-0.11.2 build 16-Aug-2018 14:22:26 Found existing installation: requests 2.18.4 build 16-Aug-2018 14:22:26 Uninstalling requests-2.18.4: build 16-Aug-2018 14:22:28 Successfully uninstalled requests-2.18.4 build 16-Aug-2018 14:22:28 Successfully installed gisdata-0.5.4 gsconfig-1.0.3 httplib2-0.11.3 pika-0.10.0 requests-2.10.0 wheel-0.24.0 build 16-Aug-2018 14:22:28 You are using pip version 9.0.3, however version 18.0 is available. build 16-Aug-2018 14:22:28 You should consider upgrading via the 'pip install --upgrade pip' command. build 16-Aug-2018 14:22:31 Removing intermediate container c7a5aa5a9319 build 16-Aug-2018 14:22:31 ---> 74d13e5c3851 build 16-Aug-2018 14:22:31 Step 5/8 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 16-Aug-2018 14:22:31 ---> Running in 007ef7500eb2 build 16-Aug-2018 14:22:32 Removing intermediate container 007ef7500eb2 build 16-Aug-2018 14:22:32 ---> 81e2aa59e458 build 16-Aug-2018 14:22:32 Step 6/8 : CMD ["extractor"] build 16-Aug-2018 14:22:32 ---> Running in 35450beb9860 build 16-Aug-2018 14:22:32 Removing intermediate container 35450beb9860 build 16-Aug-2018 14:22:32 ---> ab6b2e99b17d build 16-Aug-2018 14:22:32 Step 7/8 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.geotiff.preview" MAIN_SCRIPT="ncsa.geo.tiff.py" GEOSERVER_URL="" GEOSERVER_USERNAME="admin" GEOSERVER_PASSWORD="geoserver" GEOSERVER_WORKSPACE="clowder" PROXY_URL='http://localhost:9000/api/proxy/' PROXY_ON='false' build 16-Aug-2018 14:22:33 ---> Running in a1f2edd71c5b build 16-Aug-2018 14:22:33 Removing intermediate container a1f2edd71c5b build 16-Aug-2018 14:22:33 ---> 2ce39950bcf1 build 16-Aug-2018 14:22:33 Step 8/8 : COPY entrypoint.sh *.py extractor_info.json rasterTemplate.xml /home/clowder/ build 16-Aug-2018 14:22:34 ---> a6405a88c12b build 16-Aug-2018 14:22:34 Successfully built a6405a88c12b build 16-Aug-2018 14:22:34 Successfully tagged 10826:latest build 16-Aug-2018 14:22:34 Untagged: 10826:latest build 16-Aug-2018 14:22:34 Sending build context to Docker daemon 161.8kB build 16-Aug-2018 14:22:34 build 16-Aug-2018 14:22:34 Step 1/8 : FROM clowder/pyclowder:2 build 16-Aug-2018 14:22:34 ---> b27d04debca2 build 16-Aug-2018 14:22:34 Step 2/8 : MAINTAINER Yong Wook Kim build 16-Aug-2018 14:22:34 ---> Using cache build 16-Aug-2018 14:22:34 ---> 72a927114db4 build 16-Aug-2018 14:22:34 Step 3/8 : COPY requirements.txt /home/clowder/ build 16-Aug-2018 14:22:35 ---> a119dbfe2a84 build 16-Aug-2018 14:22:35 Step 4/8 : RUN apt-get update && apt-get install -y file gdal-bin python-gdal p7zip-full && pip install --upgrade pip==9.0.3 && pip install --upgrade -r /home/clowder/requirements.txt && rm -rf /var/lib/apt/lists/* build 16-Aug-2018 14:22:35 ---> Running in 29f87ba79516 build 16-Aug-2018 14:22:36 Get:1 http://archive.ubuntu.com/ubuntu xenial InRelease [247 kB] build 16-Aug-2018 14:22:36 Get:2 http://security.ubuntu.com/ubuntu xenial-security InRelease [107 kB] build 16-Aug-2018 14:22:36 Get:3 http://security.ubuntu.com/ubuntu xenial-security/universe Sources [88.1 kB] build 16-Aug-2018 14:22:36 Get:4 http://archive.ubuntu.com/ubuntu xenial-updates InRelease [109 kB] build 16-Aug-2018 14:22:36 Get:5 http://security.ubuntu.com/ubuntu xenial-security/main amd64 Packages [688 kB] build 16-Aug-2018 14:22:36 Get:6 http://archive.ubuntu.com/ubuntu xenial-backports InRelease [107 kB] build 16-Aug-2018 14:22:36 Get:7 http://archive.ubuntu.com/ubuntu xenial/universe Sources [9802 kB] build 16-Aug-2018 14:22:36 Get:8 http://security.ubuntu.com/ubuntu xenial-security/restricted amd64 Packages [12.7 kB] build 16-Aug-2018 14:22:36 Get:9 http://security.ubuntu.com/ubuntu xenial-security/universe amd64 Packages [465 kB] build 16-Aug-2018 14:22:36 Get:10 http://security.ubuntu.com/ubuntu xenial-security/multiverse amd64 Packages [3748 B] build 16-Aug-2018 14:22:37 Get:11 http://archive.ubuntu.com/ubuntu xenial/main amd64 Packages [1558 kB] build 16-Aug-2018 14:22:37 Get:12 http://archive.ubuntu.com/ubuntu xenial/restricted amd64 Packages [14.1 kB] build 16-Aug-2018 14:22:37 Get:13 http://archive.ubuntu.com/ubuntu xenial/universe amd64 Packages [9827 kB] build 16-Aug-2018 14:22:37 Get:14 http://archive.ubuntu.com/ubuntu xenial/multiverse amd64 Packages [176 kB] build 16-Aug-2018 14:22:37 Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/universe Sources [275 kB] build 16-Aug-2018 14:22:37 Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 Packages [1073 kB] build 16-Aug-2018 14:22:37 Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/restricted amd64 Packages [13.1 kB] build 16-Aug-2018 14:22:37 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 Packages [876 kB] build 16-Aug-2018 14:22:37 Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/multiverse amd64 Packages [18.8 kB] build 16-Aug-2018 14:22:37 Get:20 http://archive.ubuntu.com/ubuntu xenial-backports/main amd64 Packages [7343 B] build 16-Aug-2018 14:22:37 Get:21 http://archive.ubuntu.com/ubuntu xenial-backports/universe amd64 Packages [8086 B] build 16-Aug-2018 14:22:39 Fetched 25.5 MB in 3s (8011 kB/s) build 16-Aug-2018 14:22:39 Reading package lists... build 16-Aug-2018 14:22:40 Reading package lists... build 16-Aug-2018 14:22:41 Building dependency tree... build 16-Aug-2018 14:22:41 Reading state information... build 16-Aug-2018 14:22:41 The following additional packages will be installed: build 16-Aug-2018 14:22:41 fontconfig-config fonts-dejavu-core gcc-5-base krb5-locales libaec0 build 16-Aug-2018 14:22:41 libarmadillo6 libarpack2 libasn1-8-heimdal libblas-common libblas3 build 16-Aug-2018 14:22:41 libcurl3-gnutls libdap17v5 libdapclient6v5 libepsilon1 libfontconfig1 build 16-Aug-2018 14:22:41 libfreetype6 libfreexl1 libgdal1i libgeos-3.5.0 libgeos-c1v5 libgfortran3 build 16-Aug-2018 14:22:41 libgif7 libgmp10 libgnutls30 libgssapi-krb5-2 libgssapi3-heimdal build 16-Aug-2018 14:22:41 libhcrypto4-heimdal libhdf4-0-alt libhdf5-10 libheimbase1-heimdal build 16-Aug-2018 14:22:41 libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal libicu55 libidn11 build 16-Aug-2018 14:22:41 libjasper1 libjbig0 libjpeg-turbo8 libjpeg8 libk5crypto3 libkeyutils1 build 16-Aug-2018 14:22:41 libkmlbase1 libkmldom1 libkmlengine1 libkrb5-26-heimdal libkrb5-3 build 16-Aug-2018 14:22:41 libkrb5support0 liblapack3 liblcms2-2 libldap-2.4-2 libltdl7 libmagic1 build 16-Aug-2018 14:22:41 libminizip1 libmysqlclient20 libnetcdf11 libnettle6 libodbc1 libogdi3.2 build 16-Aug-2018 14:22:41 libopenjp2-7 libp11-kit0 libpng12-0 libpoppler58 libpq5 libproj9 build 16-Aug-2018 14:22:41 libquadmath0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules build 16-Aug-2018 14:22:41 libsasl2-modules-db libspatialite7 libstdc++6 libsuperlu4 libsz2 libtasn1-6 build 16-Aug-2018 14:22:41 libtiff5 liburiparser1 libwebp5 libwind0-heimdal libxerces-c3.1 libxml2 build 16-Aug-2018 14:22:41 mysql-common odbcinst odbcinst1debian2 proj-bin proj-data python-numpy build 16-Aug-2018 14:22:41 sgml-base ucf xml-core build 16-Aug-2018 14:22:41 Suggested packages: build 16-Aug-2018 14:22:41 gnutls-bin krb5-doc krb5-user libhdf4-doc libhdf4-alt-dev hdf4-tools build 16-Aug-2018 14:22:41 libnetcdf4 libjasper-runtime liblcms2-utils libmyodbc odbc-postgresql build 16-Aug-2018 14:22:41 tdsodbc unixodbc-bin ogdi-bin poppler-data libsasl2-modules-otp build 16-Aug-2018 14:22:41 libsasl2-modules-ldap libsasl2-modules-sql libsasl2-modules-gssapi-mit build 16-Aug-2018 14:22:41 | libsasl2-modules-gssapi-heimdal p7zip-rar gcc gfortran python-dev build 16-Aug-2018 14:22:41 python-nose python-numpy-dbg python-numpy-doc sgml-base-doc debhelper build 16-Aug-2018 14:22:41 The following NEW packages will be installed: build 16-Aug-2018 14:22:41 file fontconfig-config fonts-dejavu-core gdal-bin krb5-locales libaec0 build 16-Aug-2018 14:22:41 libarmadillo6 libarpack2 libasn1-8-heimdal libblas-common libblas3 build 16-Aug-2018 14:22:41 libcurl3-gnutls libdap17v5 libdapclient6v5 libepsilon1 libfontconfig1 build 16-Aug-2018 14:22:41 libfreetype6 libfreexl1 libgdal1i libgeos-3.5.0 libgeos-c1v5 libgfortran3 build 16-Aug-2018 14:22:41 libgif7 libgmp10 libgnutls30 libgssapi-krb5-2 libgssapi3-heimdal build 16-Aug-2018 14:22:41 libhcrypto4-heimdal libhdf4-0-alt libhdf5-10 libheimbase1-heimdal build 16-Aug-2018 14:22:41 libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal libicu55 libidn11 build 16-Aug-2018 14:22:41 libjasper1 libjbig0 libjpeg-turbo8 libjpeg8 libk5crypto3 libkeyutils1 build 16-Aug-2018 14:22:41 libkmlbase1 libkmldom1 libkmlengine1 libkrb5-26-heimdal libkrb5-3 build 16-Aug-2018 14:22:41 libkrb5support0 liblapack3 liblcms2-2 libldap-2.4-2 libltdl7 libmagic1 build 16-Aug-2018 14:22:41 libminizip1 libmysqlclient20 libnetcdf11 libnettle6 libodbc1 libogdi3.2 build 16-Aug-2018 14:22:41 libopenjp2-7 libp11-kit0 libpng12-0 libpoppler58 libpq5 libproj9 build 16-Aug-2018 14:22:41 libquadmath0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules build 16-Aug-2018 14:22:41 libsasl2-modules-db libspatialite7 libsuperlu4 libsz2 libtasn1-6 libtiff5 build 16-Aug-2018 14:22:41 liburiparser1 libwebp5 libwind0-heimdal libxerces-c3.1 libxml2 mysql-common build 16-Aug-2018 14:22:41 odbcinst odbcinst1debian2 p7zip-full proj-bin proj-data python-gdal build 16-Aug-2018 14:22:41 python-numpy sgml-base ucf xml-core build 16-Aug-2018 14:22:41 The following packages will be upgraded: build 16-Aug-2018 14:22:41 gcc-5-base libstdc++6 build 16-Aug-2018 14:22:41 2 upgraded, 92 newly installed, 0 to remove and 19 not upgraded. build 16-Aug-2018 14:22:41 Need to get 36.2 MB of archives. build 16-Aug-2018 14:22:41 After this operation, 146 MB of additional disk space will be used. build 16-Aug-2018 14:22:41 Get:1 http://archive.ubuntu.com/ubuntu xenial/main amd64 sgml-base all 1.26+nmu4ubuntu1 [12.5 kB] build 16-Aug-2018 14:22:41 Get:2 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libjpeg-turbo8 amd64 1.4.2-0ubuntu3.1 [111 kB] build 16-Aug-2018 14:22:41 Get:3 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblcms2-2 amd64 2.6-3ubuntu2 [137 kB] build 16-Aug-2018 14:22:42 Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas-common amd64 3.6.0-2ubuntu2 [5342 B] build 16-Aug-2018 14:22:42 Get:5 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas3 amd64 3.6.0-2ubuntu2 [147 kB] build 16-Aug-2018 14:22:42 Get:6 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libsuperlu4 amd64 4.3+dfsg-3 [158 kB] build 16-Aug-2018 14:22:42 Get:7 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjbig0 amd64 2.1-3.1 [26.6 kB] build 16-Aug-2018 14:22:42 Get:8 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gcc-5-base amd64 5.4.0-6ubuntu1~16.04.10 [17.3 kB] build 16-Aug-2018 14:22:42 Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libstdc++6 amd64 5.4.0-6ubuntu1~16.04.10 [393 kB] build 16-Aug-2018 14:22:42 Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmagic1 amd64 1:5.25-2ubuntu1.1 [216 kB] build 16-Aug-2018 14:22:42 Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 file amd64 1:5.25-2ubuntu1.1 [21.2 kB] build 16-Aug-2018 14:22:42 Get:12 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgmp10 amd64 2:6.1.0+dfsg-2 [240 kB] build 16-Aug-2018 14:22:42 Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libnettle6 amd64 3.2-1ubuntu0.16.04.1 [93.5 kB] build 16-Aug-2018 14:22:42 Get:14 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhogweed4 amd64 3.2-1ubuntu0.16.04.1 [136 kB] build 16-Aug-2018 14:22:42 Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libidn11 amd64 1.32-3ubuntu1.2 [46.5 kB] build 16-Aug-2018 14:22:42 Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libp11-kit0 amd64 0.23.2-5~ubuntu16.04.1 [105 kB] build 16-Aug-2018 14:22:42 Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtasn1-6 amd64 4.7-3ubuntu0.16.04.3 [43.5 kB] build 16-Aug-2018 14:22:42 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgnutls30 amd64 3.4.10-4ubuntu1.4 [548 kB] build 16-Aug-2018 14:22:42 Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpng12-0 amd64 1.2.54-1ubuntu1.1 [116 kB] build 16-Aug-2018 14:22:42 Get:20 http://archive.ubuntu.com/ubuntu xenial/main amd64 ucf all 3.0036 [52.9 kB] build 16-Aug-2018 14:22:42 Get:21 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 krb5-locales all 1.13.2+dfsg-5ubuntu2 [13.2 kB] build 16-Aug-2018 14:22:42 Get:22 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libroken18-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [41.4 kB] build 16-Aug-2018 14:22:42 Get:23 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasn1-8-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [174 kB] build 16-Aug-2018 14:22:42 Get:24 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5support0 amd64 1.13.2+dfsg-5ubuntu2 [30.8 kB] build 16-Aug-2018 14:22:42 Get:25 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libk5crypto3 amd64 1.13.2+dfsg-5ubuntu2 [81.2 kB] build 16-Aug-2018 14:22:42 Get:26 http://archive.ubuntu.com/ubuntu xenial/main amd64 libkeyutils1 amd64 1.5.9-8ubuntu1 [9904 B] build 16-Aug-2018 14:22:42 Get:27 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5-3 amd64 1.13.2+dfsg-5ubuntu2 [273 kB] build 16-Aug-2018 14:22:42 Get:28 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgssapi-krb5-2 amd64 1.13.2+dfsg-5ubuntu2 [120 kB] build 16-Aug-2018 14:22:42 Get:29 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhcrypto4-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [85.0 kB] build 16-Aug-2018 14:22:42 Get:30 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libheimbase1-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [29.3 kB] build 16-Aug-2018 14:22:42 Get:31 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libwind0-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [47.8 kB] build 16-Aug-2018 14:22:42 Get:32 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhx509-5-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [107 kB] build 16-Aug-2018 14:22:42 Get:33 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5-26-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [202 kB] build 16-Aug-2018 14:22:42 Get:34 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libheimntlm0-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [15.1 kB] build 16-Aug-2018 14:22:42 Get:35 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgssapi3-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [96.1 kB] build 16-Aug-2018 14:22:42 Get:36 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsasl2-modules-db amd64 2.1.26.dfsg1-14build1 [14.5 kB] build 16-Aug-2018 14:22:42 Get:37 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsasl2-2 amd64 2.1.26.dfsg1-14build1 [48.7 kB] build 16-Aug-2018 14:22:42 Get:38 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libldap-2.4-2 amd64 2.4.42+dfsg-2ubuntu3.3 [161 kB] build 16-Aug-2018 14:22:42 Get:39 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d-1ubuntu0.1 [54.4 kB] build 16-Aug-2018 14:22:42 Get:40 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcurl3-gnutls amd64 7.47.0-1ubuntu2.8 [185 kB] build 16-Aug-2018 14:22:42 Get:41 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libicu55 amd64 55.1-7ubuntu0.4 [7646 kB] build 16-Aug-2018 14:22:43 Get:42 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsasl2-modules amd64 2.1.26.dfsg1-14build1 [47.5 kB] build 16-Aug-2018 14:22:43 Get:43 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libxml2 amd64 2.9.3+dfsg1-1ubuntu0.6 [697 kB] build 16-Aug-2018 14:22:43 Get:44 http://archive.ubuntu.com/ubuntu xenial/main amd64 xml-core all 0.13+nmu2 [23.3 kB] build 16-Aug-2018 14:22:43 Get:45 http://archive.ubuntu.com/ubuntu xenial/main amd64 fonts-dejavu-core all 2.35-1 [1039 kB] build 16-Aug-2018 14:22:43 Get:46 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 fontconfig-config all 2.11.94-0ubuntu1.1 [49.9 kB] build 16-Aug-2018 14:22:43 Get:47 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libquadmath0 amd64 5.4.0-6ubuntu1~16.04.10 [131 kB] build 16-Aug-2018 14:22:43 Get:48 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran3 amd64 5.4.0-6ubuntu1~16.04.10 [260 kB] build 16-Aug-2018 14:22:43 Get:49 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblapack3 amd64 3.6.0-2ubuntu2 [1938 kB] build 16-Aug-2018 14:22:43 Get:50 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libarpack2 amd64 3.3.0-1build2 [88.2 kB] build 16-Aug-2018 14:22:43 Get:51 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libarmadillo6 amd64 1:6.500.5+dfsg-1 [75.2 kB] build 16-Aug-2018 14:22:43 Get:52 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libdap17v5 amd64 3.15.1-7 [412 kB] build 16-Aug-2018 14:22:43 Get:53 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libdapclient6v5 amd64 3.15.1-7 [85.3 kB] build 16-Aug-2018 14:22:43 Get:54 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libepsilon1 amd64 0.9.2-3ubuntu1 [41.0 kB] build 16-Aug-2018 14:22:43 Get:55 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libfreexl1 amd64 1.0.2-1 [33.6 kB] build 16-Aug-2018 14:22:43 Get:56 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libgeos-3.5.0 amd64 3.5.0-1ubuntu2 [477 kB] build 16-Aug-2018 14:22:43 Get:57 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libgeos-c1v5 amd64 3.5.0-1ubuntu2 [52.4 kB] build 16-Aug-2018 14:22:43 Get:58 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgif7 amd64 5.1.4-0.3~16.04 [30.5 kB] build 16-Aug-2018 14:22:43 Get:59 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] build 16-Aug-2018 14:22:43 Get:60 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libhdf4-0-alt amd64 4.2.10-3.2 [264 kB] build 16-Aug-2018 14:22:43 Get:61 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libaec0 amd64 0.3.2-1 [18.0 kB] build 16-Aug-2018 14:22:43 Get:62 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libsz2 amd64 0.3.2-1 [5048 B] build 16-Aug-2018 14:22:43 Get:63 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libhdf5-10 amd64 1.8.16+docs-4ubuntu1 [995 kB] build 16-Aug-2018 14:22:43 Get:64 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libjasper1 amd64 1.900.1-debian1-2.4ubuntu1.2 [131 kB] build 16-Aug-2018 14:22:43 Get:65 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libminizip1 amd64 1.1-8 [20.3 kB] build 16-Aug-2018 14:22:43 Get:66 http://archive.ubuntu.com/ubuntu xenial/universe amd64 liburiparser1 amd64 0.8.4-1 [38.0 kB] build 16-Aug-2018 14:22:43 Get:67 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libkmlbase1 amd64 1.3.0-1 [43.9 kB] build 16-Aug-2018 14:22:43 Get:68 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libkmldom1 amd64 1.3.0-1 [175 kB] build 16-Aug-2018 14:22:43 Get:69 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libkmlengine1 amd64 1.3.0-1 [77.1 kB] build 16-Aug-2018 14:22:43 Get:70 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 mysql-common all 5.7.23-0ubuntu0.16.04.1 [15.4 kB] build 16-Aug-2018 14:22:43 Get:71 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmysqlclient20 amd64 5.7.23-0ubuntu0.16.04.1 [812 kB] build 16-Aug-2018 14:22:43 Get:72 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libnetcdf11 amd64 1:4.4.0-2 [286 kB] build 16-Aug-2018 14:22:43 Get:73 http://archive.ubuntu.com/ubuntu xenial/main amd64 libltdl7 amd64 2.4.6-0.1 [38.3 kB] build 16-Aug-2018 14:22:43 Get:74 http://archive.ubuntu.com/ubuntu xenial/main amd64 libodbc1 amd64 2.3.1-4.1 [180 kB] build 16-Aug-2018 14:22:43 Get:75 http://archive.ubuntu.com/ubuntu xenial/universe amd64 proj-data all 4.9.2-2 [4004 kB] build 16-Aug-2018 14:22:43 Get:76 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libproj9 amd64 4.9.2-2 [143 kB] build 16-Aug-2018 14:22:43 Get:77 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libogdi3.2 amd64 3.2.0~beta2-7.1build1 [212 kB] build 16-Aug-2018 14:22:43 Get:78 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 libopenjp2-7 amd64 2.1.0-2.1ubuntu0.1 [103 kB] build 16-Aug-2018 14:22:43 Get:79 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfreetype6 amd64 2.6.1-0.1ubuntu2.3 [316 kB] build 16-Aug-2018 14:22:43 Get:80 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfontconfig1 amd64 2.11.94-0ubuntu1.1 [131 kB] build 16-Aug-2018 14:22:43 Get:81 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtiff5 amd64 4.0.6-1ubuntu0.4 [148 kB] build 16-Aug-2018 14:22:43 Get:82 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpoppler58 amd64 0.41.0-0ubuntu1.7 [758 kB] build 16-Aug-2018 14:22:43 Get:83 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpq5 amd64 9.5.14-0ubuntu0.16.04 [78.8 kB] build 16-Aug-2018 14:22:43 Get:84 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libspatialite7 amd64 4.3.0a-5 [1222 kB] build 16-Aug-2018 14:22:43 Get:85 http://archive.ubuntu.com/ubuntu xenial/main amd64 libwebp5 amd64 0.4.4-1 [165 kB] build 16-Aug-2018 14:22:43 Get:86 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libxerces-c3.1 amd64 3.1.3+debian-1 [842 kB] build 16-Aug-2018 14:22:43 Get:87 http://archive.ubuntu.com/ubuntu xenial/main amd64 odbcinst amd64 2.3.1-4.1 [13.1 kB] build 16-Aug-2018 14:22:43 Get:88 http://archive.ubuntu.com/ubuntu xenial/main amd64 odbcinst1debian2 amd64 2.3.1-4.1 [41.1 kB] build 16-Aug-2018 14:22:43 Get:89 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libgdal1i amd64 1.11.3+dfsg-3build2 [4013 kB] build 16-Aug-2018 14:22:44 Get:90 http://archive.ubuntu.com/ubuntu xenial/universe amd64 gdal-bin amd64 1.11.3+dfsg-3build2 [226 kB] build 16-Aug-2018 14:22:44 Get:91 http://archive.ubuntu.com/ubuntu xenial/universe amd64 p7zip-full amd64 9.20.1~dfsg.1-4.2 [919 kB] build 16-Aug-2018 14:22:44 Get:92 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-numpy amd64 1:1.11.0-1ubuntu1 [1763 kB] build 16-Aug-2018 14:22:44 Get:93 http://archive.ubuntu.com/ubuntu xenial/universe amd64 python-gdal amd64 1.11.3+dfsg-3build2 [423 kB] build 16-Aug-2018 14:22:44 Get:94 http://archive.ubuntu.com/ubuntu xenial/universe amd64 proj-bin amd64 4.9.2-2 [31.3 kB] build 16-Aug-2018 14:22:44 debconf: delaying package configuration, since apt-utils is not installed build 16-Aug-2018 14:22:44 Fetched 36.2 MB in 2s (13.2 MB/s) build 16-Aug-2018 14:22:44 Selecting previously unselected package sgml-base. build 16-Aug-2018 14:22:44 (Reading database ... build 16-Aug-2018 14:22:44 (Reading database ... 5% build 16-Aug-2018 14:22:44 (Reading database ... 10% build 16-Aug-2018 14:22:44 (Reading database ... 15% 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build 16-Aug-2018 14:22:44 Preparing to unpack .../sgml-base_1.26+nmu4ubuntu1_all.deb ... build 16-Aug-2018 14:22:44 Unpacking sgml-base (1.26+nmu4ubuntu1) ... build 16-Aug-2018 14:22:45 Selecting previously unselected package libjpeg-turbo8:amd64. build 16-Aug-2018 14:22:45 Preparing to unpack .../libjpeg-turbo8_1.4.2-0ubuntu3.1_amd64.deb ... build 16-Aug-2018 14:22:45 Unpacking libjpeg-turbo8:amd64 (1.4.2-0ubuntu3.1) ... build 16-Aug-2018 14:22:46 Selecting previously unselected package liblcms2-2:amd64. build 16-Aug-2018 14:22:46 Preparing to unpack .../liblcms2-2_2.6-3ubuntu2_amd64.deb ... build 16-Aug-2018 14:22:46 Unpacking liblcms2-2:amd64 (2.6-3ubuntu2) ... build 16-Aug-2018 14:22:46 Selecting previously unselected package libblas-common. build 16-Aug-2018 14:22:46 Preparing to unpack .../libblas-common_3.6.0-2ubuntu2_amd64.deb ... build 16-Aug-2018 14:22:46 Unpacking libblas-common (3.6.0-2ubuntu2) ... build 16-Aug-2018 14:22:47 Selecting previously unselected package 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gdal-bin. build 16-Aug-2018 14:23:38 Preparing to unpack .../gdal-bin_1.11.3+dfsg-3build2_amd64.deb ... build 16-Aug-2018 14:23:38 Unpacking gdal-bin (1.11.3+dfsg-3build2) ... build 16-Aug-2018 14:23:39 Selecting previously unselected package p7zip-full. build 16-Aug-2018 14:23:39 Preparing to unpack .../p7zip-full_9.20.1~dfsg.1-4.2_amd64.deb ... build 16-Aug-2018 14:23:39 Unpacking p7zip-full (9.20.1~dfsg.1-4.2) ... build 16-Aug-2018 14:23:40 Selecting previously unselected package python-numpy. build 16-Aug-2018 14:23:40 Preparing to unpack .../python-numpy_1%3a1.11.0-1ubuntu1_amd64.deb ... build 16-Aug-2018 14:23:40 Unpacking python-numpy (1:1.11.0-1ubuntu1) ... build 16-Aug-2018 14:23:40 Selecting previously unselected package python-gdal. build 16-Aug-2018 14:23:40 Preparing to unpack .../python-gdal_1.11.3+dfsg-3build2_amd64.deb ... build 16-Aug-2018 14:23:40 Unpacking python-gdal (1.11.3+dfsg-3build2) ... build 16-Aug-2018 14:23:41 Selecting previously unselected package proj-bin. build 16-Aug-2018 14:23:41 Preparing to unpack .../proj-bin_4.9.2-2_amd64.deb ... build 16-Aug-2018 14:23:41 Unpacking proj-bin (4.9.2-2) ... build 16-Aug-2018 14:23:41 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 16-Aug-2018 14:23:42 Setting up sgml-base (1.26+nmu4ubuntu1) ... build 16-Aug-2018 14:23:42 Setting up libjpeg-turbo8:amd64 (1.4.2-0ubuntu3.1) ... build 16-Aug-2018 14:23:42 Setting up liblcms2-2:amd64 (2.6-3ubuntu2) ... build 16-Aug-2018 14:23:43 Setting up libblas-common (3.6.0-2ubuntu2) ... build 16-Aug-2018 14:23:43 Setting up libblas3 (3.6.0-2ubuntu2) ... build 16-Aug-2018 14:23:43 update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode build 16-Aug-2018 14:23:43 Setting up libsuperlu4:amd64 (4.3+dfsg-3) ... build 16-Aug-2018 14:23:43 Setting up libjbig0:amd64 (2.1-3.1) ... build 16-Aug-2018 14:23:43 Setting up libmagic1:amd64 (1:5.25-2ubuntu1.1) ... build 16-Aug-2018 14:23:44 Setting up file (1:5.25-2ubuntu1.1) ... build 16-Aug-2018 14:23:44 Setting up libgmp10:amd64 (2:6.1.0+dfsg-2) ... build 16-Aug-2018 14:23:44 Setting up libnettle6:amd64 (3.2-1ubuntu0.16.04.1) ... build 16-Aug-2018 14:23:44 Setting up libhogweed4:amd64 (3.2-1ubuntu0.16.04.1) ... build 16-Aug-2018 14:23:44 Setting up libidn11:amd64 (1.32-3ubuntu1.2) ... build 16-Aug-2018 14:23:44 Setting up libp11-kit0:amd64 (0.23.2-5~ubuntu16.04.1) ... build 16-Aug-2018 14:23:44 Setting up libtasn1-6:amd64 (4.7-3ubuntu0.16.04.3) ... build 16-Aug-2018 14:23:45 Setting up libgnutls30:amd64 (3.4.10-4ubuntu1.4) ... build 16-Aug-2018 14:23:45 Setting up libpng12-0:amd64 (1.2.54-1ubuntu1.1) ... build 16-Aug-2018 14:23:45 Setting up ucf (3.0036) ... build 16-Aug-2018 14:23:45 debconf: unable to initialize frontend: Dialog build 16-Aug-2018 14:23:45 debconf: (TERM is not set, so the dialog frontend is not usable.) build 16-Aug-2018 14:23:45 debconf: falling back to frontend: Readline build 16-Aug-2018 14:23:45 debconf: unable to initialize frontend: Readline build 16-Aug-2018 14:23:45 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) build 16-Aug-2018 14:23:45 debconf: falling back to frontend: Teletype build 16-Aug-2018 14:23:45 Setting up krb5-locales (1.13.2+dfsg-5ubuntu2) ... build 16-Aug-2018 14:23:45 Setting up libroken18-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 16-Aug-2018 14:23:46 Setting up libasn1-8-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 16-Aug-2018 14:23:46 Setting up libkrb5support0:amd64 (1.13.2+dfsg-5ubuntu2) ... build 16-Aug-2018 14:23:46 Setting up libk5crypto3:amd64 (1.13.2+dfsg-5ubuntu2) ... build 16-Aug-2018 14:23:47 Setting up libkeyutils1:amd64 (1.5.9-8ubuntu1) ... build 16-Aug-2018 14:23:47 Setting up libkrb5-3:amd64 (1.13.2+dfsg-5ubuntu2) ... build 16-Aug-2018 14:23:47 Setting up libgssapi-krb5-2:amd64 (1.13.2+dfsg-5ubuntu2) ... build 16-Aug-2018 14:23:47 Setting up libhcrypto4-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 16-Aug-2018 14:23:48 Setting up libheimbase1-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 16-Aug-2018 14:23:48 Setting up libwind0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 16-Aug-2018 14:23:48 Setting up libhx509-5-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 16-Aug-2018 14:23:48 Setting up libkrb5-26-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 16-Aug-2018 14:23:48 Setting up libheimntlm0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 16-Aug-2018 14:23:48 Setting up libgssapi3-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 16-Aug-2018 14:23:48 Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-14build1) ... build 16-Aug-2018 14:23:49 Setting up libsasl2-2:amd64 (2.1.26.dfsg1-14build1) ... build 16-Aug-2018 14:23:49 Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2ubuntu3.3) ... build 16-Aug-2018 14:23:49 Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d-1ubuntu0.1) ... build 16-Aug-2018 14:23:49 Setting up libcurl3-gnutls:amd64 (7.47.0-1ubuntu2.8) ... build 16-Aug-2018 14:23:50 Setting up libicu55:amd64 (55.1-7ubuntu0.4) ... build 16-Aug-2018 14:23:50 Setting up libsasl2-modules:amd64 (2.1.26.dfsg1-14build1) ... build 16-Aug-2018 14:23:51 Setting up libxml2:amd64 (2.9.3+dfsg1-1ubuntu0.6) ... build 16-Aug-2018 14:23:51 Setting up xml-core (0.13+nmu2) ... build 16-Aug-2018 14:23:52 Setting up fonts-dejavu-core (2.35-1) ... build 16-Aug-2018 14:23:53 Setting up fontconfig-config (2.11.94-0ubuntu1.1) ... build 16-Aug-2018 14:23:56 Setting up libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 16-Aug-2018 14:23:56 Setting up libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 16-Aug-2018 14:23:56 Setting up liblapack3 (3.6.0-2ubuntu2) ... build 16-Aug-2018 14:23:56 update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode build 16-Aug-2018 14:23:56 Setting up libarpack2 (3.3.0-1build2) ... build 16-Aug-2018 14:23:57 Setting up libarmadillo6 (1:6.500.5+dfsg-1) ... build 16-Aug-2018 14:23:57 Setting up libdap17v5:amd64 (3.15.1-7) ... build 16-Aug-2018 14:23:58 Setting up libdapclient6v5:amd64 (3.15.1-7) ... build 16-Aug-2018 14:23:58 Setting up libepsilon1:amd64 (0.9.2-3ubuntu1) ... build 16-Aug-2018 14:23:58 Setting up libfreexl1:amd64 (1.0.2-1) ... build 16-Aug-2018 14:23:58 Setting up libgeos-3.5.0 (3.5.0-1ubuntu2) ... build 16-Aug-2018 14:23:58 Setting up libgeos-c1v5 (3.5.0-1ubuntu2) ... build 16-Aug-2018 14:23:58 Setting up libgif7:amd64 (5.1.4-0.3~16.04) ... build 16-Aug-2018 14:23:58 Setting up libjpeg8:amd64 (8c-2ubuntu8) ... build 16-Aug-2018 14:23:59 Setting up libhdf4-0-alt (4.2.10-3.2) ... build 16-Aug-2018 14:23:59 Setting up libaec0:amd64 (0.3.2-1) ... build 16-Aug-2018 14:23:59 Setting up libsz2:amd64 (0.3.2-1) ... build 16-Aug-2018 14:23:59 Setting up libhdf5-10:amd64 (1.8.16+docs-4ubuntu1) ... build 16-Aug-2018 14:23:59 Setting up libjasper1:amd64 (1.900.1-debian1-2.4ubuntu1.2) ... build 16-Aug-2018 14:23:59 Setting up libminizip1:amd64 (1.1-8) ... build 16-Aug-2018 14:23:59 Setting up liburiparser1:amd64 (0.8.4-1) ... build 16-Aug-2018 14:24:00 Setting up libkmlbase1:amd64 (1.3.0-1) ... build 16-Aug-2018 14:24:00 Setting up libkmldom1:amd64 (1.3.0-1) ... build 16-Aug-2018 14:24:00 Setting up libkmlengine1:amd64 (1.3.0-1) ... build 16-Aug-2018 14:24:00 Setting up mysql-common (5.7.23-0ubuntu0.16.04.1) ... build 16-Aug-2018 14:24:00 update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode build 16-Aug-2018 14:24:00 Setting up libmysqlclient20:amd64 (5.7.23-0ubuntu0.16.04.1) ... build 16-Aug-2018 14:24:00 Setting up libnetcdf11 (1:4.4.0-2) ... build 16-Aug-2018 14:24:00 Setting up libltdl7:amd64 (2.4.6-0.1) ... build 16-Aug-2018 14:24:01 Setting up libodbc1:amd64 (2.3.1-4.1) ... build 16-Aug-2018 14:24:01 Setting up proj-data (4.9.2-2) ... build 16-Aug-2018 14:24:01 Setting up libproj9 (4.9.2-2) ... build 16-Aug-2018 14:24:01 Setting up libogdi3.2 (3.2.0~beta2-7.1build1) ... build 16-Aug-2018 14:24:01 Setting up libopenjp2-7:amd64 (2.1.0-2.1ubuntu0.1) ... build 16-Aug-2018 14:24:01 Setting up libfreetype6:amd64 (2.6.1-0.1ubuntu2.3) ... build 16-Aug-2018 14:24:01 Setting up libfontconfig1:amd64 (2.11.94-0ubuntu1.1) ... build 16-Aug-2018 14:24:01 Setting up libtiff5:amd64 (4.0.6-1ubuntu0.4) ... build 16-Aug-2018 14:24:02 Setting up libpoppler58:amd64 (0.41.0-0ubuntu1.7) ... build 16-Aug-2018 14:24:02 Setting up libpq5:amd64 (9.5.14-0ubuntu0.16.04) ... build 16-Aug-2018 14:24:02 Setting up libspatialite7:amd64 (4.3.0a-5) ... build 16-Aug-2018 14:24:02 Setting up libwebp5:amd64 (0.4.4-1) ... build 16-Aug-2018 14:24:02 Setting up libxerces-c3.1:amd64 (3.1.3+debian-1) ... build 16-Aug-2018 14:24:02 Setting up p7zip-full (9.20.1~dfsg.1-4.2) ... build 16-Aug-2018 14:24:03 Setting up python-numpy (1:1.11.0-1ubuntu1) ... build 16-Aug-2018 14:24:05 Setting up proj-bin (4.9.2-2) ... build 16-Aug-2018 14:24:05 Setting up odbcinst1debian2:amd64 (2.3.1-4.1) ... build 16-Aug-2018 14:24:05 Setting up libgdal1i (1.11.3+dfsg-3build2) ... build 16-Aug-2018 14:24:05 Setting up gdal-bin (1.11.3+dfsg-3build2) ... build 16-Aug-2018 14:24:06 Setting up python-gdal (1.11.3+dfsg-3build2) ... build 16-Aug-2018 14:24:07 Setting up odbcinst (2.3.1-4.1) ... build 16-Aug-2018 14:24:07 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 16-Aug-2018 14:24:07 Processing triggers for sgml-base (1.26+nmu4ubuntu1) ... build 16-Aug-2018 14:24:08 Collecting pip==9.0.3 build 16-Aug-2018 14:24:09 Downloading https://files.pythonhosted.org/packages/ac/95/a05b56bb975efa78d3557efa36acaf9cf5d2fd0ee0062060493687432e03/pip-9.0.3-py2.py3-none-any.whl (1.4MB) build 16-Aug-2018 14:24:09 Installing collected packages: pip build 16-Aug-2018 14:24:09 Found existing installation: pip 8.1.1 build 16-Aug-2018 14:24:09 Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr build 16-Aug-2018 14:24:09 Successfully installed pip-9.0.3 build 16-Aug-2018 14:24:10 You are using pip version 9.0.3, however version 18.0 is available. build 16-Aug-2018 14:24:10 You should consider upgrading via the 'pip install --upgrade pip' command. build 16-Aug-2018 14:24:10 Collecting gsconfig==1.0.3 (from -r /home/clowder/requirements.txt (line 1)) build 16-Aug-2018 14:24:10 Downloading https://files.pythonhosted.org/packages/85/a9/ec6bf3d2de4763a826d6b2b569d7e1b22e8c660c3bd110bb22ea060fad39/gsconfig-1.0.3.tar.gz build 16-Aug-2018 14:24:10 Collecting pika==0.10.0 (from -r /home/clowder/requirements.txt (line 2)) build 16-Aug-2018 14:24:10 Downloading https://files.pythonhosted.org/packages/26/12/400cf0aca6b1ecf1f00dcd89b246e7a4c8558677304ba067167b8167e714/pika-0.10.0-py2.py3-none-any.whl (92kB) build 16-Aug-2018 14:24:10 Collecting requests==2.10.0 (from -r /home/clowder/requirements.txt (line 3)) build 16-Aug-2018 14:24:10 Downloading https://files.pythonhosted.org/packages/99/b4/63d99ba8e189c47d906b43bae18af4396e336f2b1bfec86af31efe2d2cb8/requests-2.10.0-py2.py3-none-any.whl (506kB) build 16-Aug-2018 14:24:11 Collecting wheel==0.24.0 (from -r /home/clowder/requirements.txt (line 4)) build 16-Aug-2018 14:24:11 Downloading https://files.pythonhosted.org/packages/e8/14/eaaac12b0432c984a27ad0050a5a0bedc6135df35a0f5f1f35228faf12d4/wheel-0.24.0-py2.py3-none-any.whl (63kB) build 16-Aug-2018 14:24:11 Collecting httplib2>=0.7.4 (from gsconfig==1.0.3->-r /home/clowder/requirements.txt (line 1)) build 16-Aug-2018 14:24:11 Downloading https://files.pythonhosted.org/packages/fd/ce/aa4a385e3e9fd351737fd2b07edaa56e7a730448465aceda6b35086a0d9b/httplib2-0.11.3.tar.gz (215kB) build 16-Aug-2018 14:24:11 Collecting gisdata==0.5.4 (from gsconfig==1.0.3->-r /home/clowder/requirements.txt (line 1)) build 16-Aug-2018 14:24:11 Downloading https://files.pythonhosted.org/packages/2a/e3/bd15b7a5d0cdd8d316b051ac3e2ec180bd09d9a144e6df35733cbdc9ca82/gisdata-0.5.4.tar.gz (1.2MB) build 16-Aug-2018 14:24:12 Installing collected packages: httplib2, gisdata, gsconfig, pika, requests, wheel build 16-Aug-2018 14:24:12 Running setup.py install for httplib2: started build 16-Aug-2018 14:24:12 Running setup.py install for httplib2: finished with status 'done' build 16-Aug-2018 14:24:12 Running setup.py install for gisdata: started build 16-Aug-2018 14:24:12 Running setup.py install for gisdata: finished with status 'done' build 16-Aug-2018 14:24:12 Running setup.py install for gsconfig: started build 16-Aug-2018 14:24:12 Running setup.py install for gsconfig: finished with status 'done' build 16-Aug-2018 14:24:12 Found existing installation: pika 0.11.2 build 16-Aug-2018 14:24:12 Uninstalling pika-0.11.2: build 16-Aug-2018 14:24:14 Successfully uninstalled pika-0.11.2 build 16-Aug-2018 14:24:14 Found existing installation: requests 2.18.4 build 16-Aug-2018 14:24:14 Uninstalling requests-2.18.4: build 16-Aug-2018 14:24:15 Successfully uninstalled requests-2.18.4 build 16-Aug-2018 14:24:15 Successfully installed gisdata-0.5.4 gsconfig-1.0.3 httplib2-0.11.3 pika-0.10.0 requests-2.10.0 wheel-0.24.0 build 16-Aug-2018 14:24:15 You are using pip version 9.0.3, however version 18.0 is available. build 16-Aug-2018 14:24:15 You should consider upgrading via the 'pip install --upgrade pip' command. build 16-Aug-2018 14:24:19 Removing intermediate container 29f87ba79516 build 16-Aug-2018 14:24:19 ---> ca18263e4ca2 build 16-Aug-2018 14:24:19 Step 5/8 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 16-Aug-2018 14:24:20 ---> Running in fbdc71647f68 build 16-Aug-2018 14:24:21 Removing intermediate container fbdc71647f68 build 16-Aug-2018 14:24:21 ---> 195964c767fa build 16-Aug-2018 14:24:21 Step 6/8 : CMD ["extractor"] build 16-Aug-2018 14:24:21 ---> Running in 855b077202cf build 16-Aug-2018 14:24:22 Removing intermediate container 855b077202cf build 16-Aug-2018 14:24:22 ---> e58a0bd496b1 build 16-Aug-2018 14:24:22 Step 7/8 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.geoshp.preview" MAIN_SCRIPT="ncsa.geo.shp.py" GEOSERVER_URL="" GEOSERVER_USERNAME="admin" GEOSERVER_PASSWORD="geoserver" GEOSERVER_WORKSPACE="clowder" PROXY_URL='http://localhost:9000/api/proxy/' PROXY_ON='false' build 16-Aug-2018 14:24:22 ---> Running in caefac380fc3 build 16-Aug-2018 14:24:23 Removing intermediate container caefac380fc3 build 16-Aug-2018 14:24:23 ---> 6d77e6f4ce38 build 16-Aug-2018 14:24:23 Step 8/8 : COPY entrypoint.sh *.py extractor_info.json rasterTemplate.xml /home/clowder/ build 16-Aug-2018 14:24:23 ---> 50efa2c8ba9d build 16-Aug-2018 14:24:23 Successfully built 50efa2c8ba9d build 16-Aug-2018 14:24:23 Successfully tagged 10826:latest build 16-Aug-2018 14:24:24 Untagged: 10826:latest build 16-Aug-2018 14:24:24 Sending build context to Docker daemon 1.472MB build 16-Aug-2018 14:24:24 build 16-Aug-2018 14:24:24 Step 1/8 : FROM clowder/pyclowder:2 build 16-Aug-2018 14:24:24 ---> b27d04debca2 build 16-Aug-2018 14:24:24 Step 2/8 : MAINTAINER Yong Wook Kim build 16-Aug-2018 14:24:24 ---> Using cache build 16-Aug-2018 14:24:24 ---> 72a927114db4 build 16-Aug-2018 14:24:24 Step 3/8 : COPY requirements.txt /home/clowder/ build 16-Aug-2018 14:24:24 ---> 4157c7f9f4d4 build 16-Aug-2018 14:24:24 Step 4/8 : RUN apt-get update && apt-get install -y file gdal-bin python-gdal p7zip-full python-pyproj git && pip install --upgrade pip==9.0.3 && pip install -r /home/clowder/requirements.txt && rm -rf /var/lib/apt/lists/* build 16-Aug-2018 14:24:24 ---> Running in 90dfa0bf45c6 build 16-Aug-2018 14:24:25 Get:1 http://security.ubuntu.com/ubuntu xenial-security InRelease [107 kB] build 16-Aug-2018 14:24:25 Get:2 http://archive.ubuntu.com/ubuntu xenial InRelease [247 kB] build 16-Aug-2018 14:24:25 Get:3 http://security.ubuntu.com/ubuntu xenial-security/universe Sources [88.1 kB] build 16-Aug-2018 14:24:25 Get:4 http://security.ubuntu.com/ubuntu xenial-security/main amd64 Packages [688 kB] build 16-Aug-2018 14:24:25 Get:5 http://security.ubuntu.com/ubuntu xenial-security/restricted amd64 Packages [12.7 kB] build 16-Aug-2018 14:24:25 Get:6 http://security.ubuntu.com/ubuntu xenial-security/universe amd64 Packages [465 kB] build 16-Aug-2018 14:24:25 Get:7 http://security.ubuntu.com/ubuntu xenial-security/multiverse amd64 Packages [3748 B] build 16-Aug-2018 14:24:26 Get:8 http://archive.ubuntu.com/ubuntu xenial-updates InRelease [109 kB] build 16-Aug-2018 14:24:26 Get:9 http://archive.ubuntu.com/ubuntu xenial-backports InRelease [107 kB] build 16-Aug-2018 14:24:26 Get:10 http://archive.ubuntu.com/ubuntu xenial/universe Sources [9802 kB] build 16-Aug-2018 14:24:27 Get:11 http://archive.ubuntu.com/ubuntu xenial/main amd64 Packages [1558 kB] build 16-Aug-2018 14:24:27 Get:12 http://archive.ubuntu.com/ubuntu xenial/restricted amd64 Packages [14.1 kB] build 16-Aug-2018 14:24:27 Get:13 http://archive.ubuntu.com/ubuntu xenial/universe amd64 Packages [9827 kB] build 16-Aug-2018 14:24:28 Get:14 http://archive.ubuntu.com/ubuntu xenial/multiverse amd64 Packages [176 kB] build 16-Aug-2018 14:24:28 Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/universe Sources [275 kB] build 16-Aug-2018 14:24:28 Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 Packages [1073 kB] build 16-Aug-2018 14:24:28 Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/restricted amd64 Packages [13.1 kB] build 16-Aug-2018 14:24:28 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 Packages [876 kB] build 16-Aug-2018 14:24:28 Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/multiverse amd64 Packages [18.8 kB] build 16-Aug-2018 14:24:28 Get:20 http://archive.ubuntu.com/ubuntu xenial-backports/main amd64 Packages [7343 B] build 16-Aug-2018 14:24:28 Get:21 http://archive.ubuntu.com/ubuntu xenial-backports/universe amd64 Packages [8086 B] build 16-Aug-2018 14:24:29 Fetched 25.5 MB in 3s (6820 kB/s) build 16-Aug-2018 14:24:29 Reading package lists... build 16-Aug-2018 14:24:30 Reading package lists... build 16-Aug-2018 14:24:30 Building dependency tree... build 16-Aug-2018 14:24:30 Reading state information... build 16-Aug-2018 14:24:31 The following additional packages will be installed: build 16-Aug-2018 14:24:31 fontconfig-config fonts-dejavu-core gcc-5-base git-man ifupdown iproute2 build 16-Aug-2018 14:24:31 isc-dhcp-client isc-dhcp-common krb5-locales less libaec0 libarmadillo6 build 16-Aug-2018 14:24:31 libarpack2 libasn1-8-heimdal libatm1 libblas-common libblas3 libbsd0 build 16-Aug-2018 14:24:31 libcurl3-gnutls libdap17v5 libdapclient6v5 libdns-export162 libedit2 build 16-Aug-2018 14:24:31 libepsilon1 liberror-perl libfontconfig1 libfreetype6 libfreexl1 libgdal1i build 16-Aug-2018 14:24:31 libgdbm3 libgeos-3.5.0 libgeos-c1v5 libgfortran3 libgif7 libgmp10 build 16-Aug-2018 14:24:31 libgnutls30 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal build 16-Aug-2018 14:24:31 libhdf4-0-alt libhdf5-10 libheimbase1-heimdal libheimntlm0-heimdal build 16-Aug-2018 14:24:31 libhogweed4 libhx509-5-heimdal libicu55 libidn11 libisc-export160 libjasper1 build 16-Aug-2018 14:24:31 libjbig0 libjpeg-turbo8 libjpeg8 libk5crypto3 libkeyutils1 libkmlbase1 build 16-Aug-2018 14:24:31 libkmldom1 libkmlengine1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 build 16-Aug-2018 14:24:31 liblapack3 liblcms2-2 libldap-2.4-2 libltdl7 libmagic1 libminizip1 libmnl0 build 16-Aug-2018 14:24:31 libmysqlclient20 libnetcdf11 libnettle6 libodbc1 libogdi3.2 libopenjp2-7 build 16-Aug-2018 14:24:31 libp11-kit0 libperl5.22 libpng12-0 libpoppler58 libpopt0 libpq5 libproj9 build 16-Aug-2018 14:24:31 libquadmath0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules build 16-Aug-2018 14:24:31 libsasl2-modules-db libspatialite7 libstdc++6 libsuperlu4 libsz2 libtasn1-6 build 16-Aug-2018 14:24:31 libtiff5 liburiparser1 libwebp5 libwind0-heimdal libx11-6 libx11-data build 16-Aug-2018 14:24:31 libxau6 libxcb1 libxdmcp6 libxerces-c3.1 libxext6 libxml2 libxmuu1 build 16-Aug-2018 14:24:31 libxtables11 mysql-common netbase odbcinst odbcinst1debian2 openssh-client build 16-Aug-2018 14:24:31 patch perl perl-base perl-modules-5.22 proj-bin proj-data python-numpy build 16-Aug-2018 14:24:31 rename rsync sgml-base ucf xauth xml-core build 16-Aug-2018 14:24:31 Suggested packages: build 16-Aug-2018 14:24:31 gettext-base git-daemon-run | git-daemon-sysvinit git-doc git-el git-email build 16-Aug-2018 14:24:31 git-gui gitk gitweb git-arch git-cvs git-mediawiki git-svn ppp rdnssd build 16-Aug-2018 14:24:31 iproute2-doc resolvconf avahi-autoipd isc-dhcp-client-ddns apparmor build 16-Aug-2018 14:24:31 gnutls-bin krb5-doc krb5-user libhdf4-doc libhdf4-alt-dev hdf4-tools build 16-Aug-2018 14:24:31 libnetcdf4 libjasper-runtime liblcms2-utils libmyodbc odbc-postgresql build 16-Aug-2018 14:24:31 tdsodbc unixodbc-bin ogdi-bin poppler-data libsasl2-modules-otp build 16-Aug-2018 14:24:31 libsasl2-modules-ldap libsasl2-modules-sql libsasl2-modules-gssapi-mit build 16-Aug-2018 14:24:31 | libsasl2-modules-gssapi-heimdal ssh-askpass libpam-ssh keychain build 16-Aug-2018 14:24:31 monkeysphere p7zip-rar ed diffutils-doc perl-doc libterm-readline-gnu-perl build 16-Aug-2018 14:24:31 | libterm-readline-perl-perl make gcc gfortran python-dev python-nose build 16-Aug-2018 14:24:31 python-numpy-dbg python-numpy-doc openssh-server sgml-base-doc debhelper build 16-Aug-2018 14:24:31 The following NEW packages will be installed: build 16-Aug-2018 14:24:31 file fontconfig-config fonts-dejavu-core gdal-bin git git-man ifupdown build 16-Aug-2018 14:24:31 iproute2 isc-dhcp-client isc-dhcp-common krb5-locales less libaec0 build 16-Aug-2018 14:24:31 libarmadillo6 libarpack2 libasn1-8-heimdal libatm1 libblas-common libblas3 build 16-Aug-2018 14:24:31 libbsd0 libcurl3-gnutls libdap17v5 libdapclient6v5 libdns-export162 libedit2 build 16-Aug-2018 14:24:31 libepsilon1 liberror-perl libfontconfig1 libfreetype6 libfreexl1 libgdal1i build 16-Aug-2018 14:24:31 libgdbm3 libgeos-3.5.0 libgeos-c1v5 libgfortran3 libgif7 libgmp10 build 16-Aug-2018 14:24:31 libgnutls30 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal build 16-Aug-2018 14:24:31 libhdf4-0-alt libhdf5-10 libheimbase1-heimdal libheimntlm0-heimdal build 16-Aug-2018 14:24:31 libhogweed4 libhx509-5-heimdal libicu55 libidn11 libisc-export160 libjasper1 build 16-Aug-2018 14:24:31 libjbig0 libjpeg-turbo8 libjpeg8 libk5crypto3 libkeyutils1 libkmlbase1 build 16-Aug-2018 14:24:31 libkmldom1 libkmlengine1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 build 16-Aug-2018 14:24:31 liblapack3 liblcms2-2 libldap-2.4-2 libltdl7 libmagic1 libminizip1 libmnl0 build 16-Aug-2018 14:24:31 libmysqlclient20 libnetcdf11 libnettle6 libodbc1 libogdi3.2 libopenjp2-7 build 16-Aug-2018 14:24:31 libp11-kit0 libperl5.22 libpng12-0 libpoppler58 libpopt0 libpq5 libproj9 build 16-Aug-2018 14:24:31 libquadmath0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules build 16-Aug-2018 14:24:31 libsasl2-modules-db libspatialite7 libsuperlu4 libsz2 libtasn1-6 libtiff5 build 16-Aug-2018 14:24:31 liburiparser1 libwebp5 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb1 build 16-Aug-2018 14:24:31 libxdmcp6 libxerces-c3.1 libxext6 libxml2 libxmuu1 libxtables11 mysql-common build 16-Aug-2018 14:24:31 netbase odbcinst odbcinst1debian2 openssh-client p7zip-full patch perl build 16-Aug-2018 14:24:31 perl-modules-5.22 proj-bin proj-data python-gdal python-numpy python-pyproj build 16-Aug-2018 14:24:31 rename rsync sgml-base ucf xauth xml-core build 16-Aug-2018 14:24:31 The following packages will be upgraded: build 16-Aug-2018 14:24:31 gcc-5-base libstdc++6 perl-base build 16-Aug-2018 14:24:31 3 upgraded, 126 newly installed, 0 to remove and 18 not upgraded. build 16-Aug-2018 14:24:31 Need to get 51.6 MB of archives. build 16-Aug-2018 14:24:31 After this operation, 225 MB of additional disk space will be used. build 16-Aug-2018 14:24:31 Get:1 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 perl-base amd64 5.22.1-9ubuntu0.5 [1284 kB] build 16-Aug-2018 14:24:32 Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 libatm1 amd64 1:2.5.1-1.5 [24.2 kB] build 16-Aug-2018 14:24:32 Get:3 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmnl0 amd64 1.0.3-5 [12.0 kB] build 16-Aug-2018 14:24:32 Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpopt0 amd64 1.16-10 [26.0 kB] build 16-Aug-2018 14:24:32 Get:5 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgdbm3 amd64 1.8.3-13.1 [16.9 kB] build 16-Aug-2018 14:24:32 Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] build 16-Aug-2018 14:24:32 Get:7 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxdmcp6 amd64 1:1.1.2-1.1 [11.0 kB] build 16-Aug-2018 14:24:32 Get:8 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb1 amd64 1.11.1-1ubuntu1 [40.0 kB] build 16-Aug-2018 14:24:32 Get:9 http://archive.ubuntu.com/ubuntu xenial/main amd64 libx11-data all 2:1.6.3-1ubuntu2 [113 kB] build 16-Aug-2018 14:24:32 Get:10 http://archive.ubuntu.com/ubuntu xenial/main amd64 libx11-6 amd64 2:1.6.3-1ubuntu2 [571 kB] build 16-Aug-2018 14:24:32 Get:11 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB] build 16-Aug-2018 14:24:32 Get:12 http://archive.ubuntu.com/ubuntu xenial/main amd64 sgml-base all 1.26+nmu4ubuntu1 [12.5 kB] build 16-Aug-2018 14:24:32 Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libjpeg-turbo8 amd64 1.4.2-0ubuntu3.1 [111 kB] build 16-Aug-2018 14:24:32 Get:14 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblcms2-2 amd64 2.6-3ubuntu2 [137 kB] build 16-Aug-2018 14:24:32 Get:15 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas-common amd64 3.6.0-2ubuntu2 [5342 B] build 16-Aug-2018 14:24:32 Get:16 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas3 amd64 3.6.0-2ubuntu2 [147 kB] build 16-Aug-2018 14:24:32 Get:17 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libsuperlu4 amd64 4.3+dfsg-3 [158 kB] build 16-Aug-2018 14:24:32 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 perl-modules-5.22 all 5.22.1-9ubuntu0.5 [2645 kB] build 16-Aug-2018 14:24:32 Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libperl5.22 amd64 5.22.1-9ubuntu0.5 [3396 kB] build 16-Aug-2018 14:24:32 Get:20 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 perl amd64 5.22.1-9ubuntu0.5 [238 kB] build 16-Aug-2018 14:24:32 Get:21 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjbig0 amd64 2.1-3.1 [26.6 kB] build 16-Aug-2018 14:24:32 Get:22 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gcc-5-base amd64 5.4.0-6ubuntu1~16.04.10 [17.3 kB] build 16-Aug-2018 14:24:32 Get:23 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libstdc++6 amd64 5.4.0-6ubuntu1~16.04.10 [393 kB] build 16-Aug-2018 14:24:32 Get:24 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmagic1 amd64 1:5.25-2ubuntu1.1 [216 kB] build 16-Aug-2018 14:24:32 Get:25 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 file amd64 1:5.25-2ubuntu1.1 [21.2 kB] build 16-Aug-2018 14:24:32 Get:26 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 iproute2 amd64 4.3.0-1ubuntu3.16.04.3 [522 kB] build 16-Aug-2018 14:24:32 Get:27 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 ifupdown amd64 0.8.10ubuntu1.4 [54.9 kB] build 16-Aug-2018 14:24:32 Get:28 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libisc-export160 amd64 1:9.10.3.dfsg.P4-8ubuntu1.10 [153 kB] build 16-Aug-2018 14:24:32 Get:29 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdns-export162 amd64 1:9.10.3.dfsg.P4-8ubuntu1.10 [666 kB] build 16-Aug-2018 14:24:32 Get:30 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 isc-dhcp-client amd64 4.3.3-5ubuntu12.10 [224 kB] build 16-Aug-2018 14:24:32 Get:31 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 isc-dhcp-common amd64 4.3.3-5ubuntu12.10 [105 kB] build 16-Aug-2018 14:24:32 Get:32 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 less amd64 481-2.1ubuntu0.2 [110 kB] build 16-Aug-2018 14:24:32 Get:33 http://archive.ubuntu.com/ubuntu xenial/main amd64 libbsd0 amd64 0.8.2-1 [41.7 kB] build 16-Aug-2018 14:24:32 Get:34 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgmp10 amd64 2:6.1.0+dfsg-2 [240 kB] build 16-Aug-2018 14:24:33 Get:35 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libnettle6 amd64 3.2-1ubuntu0.16.04.1 [93.5 kB] build 16-Aug-2018 14:24:33 Get:36 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhogweed4 amd64 3.2-1ubuntu0.16.04.1 [136 kB] build 16-Aug-2018 14:24:33 Get:37 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libidn11 amd64 1.32-3ubuntu1.2 [46.5 kB] build 16-Aug-2018 14:24:33 Get:38 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libp11-kit0 amd64 0.23.2-5~ubuntu16.04.1 [105 kB] build 16-Aug-2018 14:24:33 Get:39 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtasn1-6 amd64 4.7-3ubuntu0.16.04.3 [43.5 kB] build 16-Aug-2018 14:24:33 Get:40 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgnutls30 amd64 3.4.10-4ubuntu1.4 [548 kB] build 16-Aug-2018 14:24:33 Get:41 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpng12-0 amd64 1.2.54-1ubuntu1.1 [116 kB] build 16-Aug-2018 14:24:33 Get:42 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxtables11 amd64 1.6.0-2ubuntu3 [27.2 kB] build 16-Aug-2018 14:24:33 Get:43 http://archive.ubuntu.com/ubuntu xenial/main amd64 netbase all 5.3 [12.9 kB] build 16-Aug-2018 14:24:33 Get:44 http://archive.ubuntu.com/ubuntu xenial/main amd64 ucf all 3.0036 [52.9 kB] build 16-Aug-2018 14:24:33 Get:45 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 krb5-locales all 1.13.2+dfsg-5ubuntu2 [13.2 kB] build 16-Aug-2018 14:24:33 Get:46 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libroken18-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [41.4 kB] build 16-Aug-2018 14:24:33 Get:47 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasn1-8-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [174 kB] build 16-Aug-2018 14:24:33 Get:48 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5support0 amd64 1.13.2+dfsg-5ubuntu2 [30.8 kB] build 16-Aug-2018 14:24:33 Get:49 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libk5crypto3 amd64 1.13.2+dfsg-5ubuntu2 [81.2 kB] build 16-Aug-2018 14:24:33 Get:50 http://archive.ubuntu.com/ubuntu xenial/main amd64 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build 16-Aug-2018 14:26:25 Setting up libx11-data (2:1.6.3-1ubuntu2) ... build 16-Aug-2018 14:26:25 Setting up libx11-6:amd64 (2:1.6.3-1ubuntu2) ... build 16-Aug-2018 14:26:25 Setting up libxext6:amd64 (2:1.3.3-1) ... build 16-Aug-2018 14:26:25 Setting up sgml-base (1.26+nmu4ubuntu1) ... build 16-Aug-2018 14:26:26 Setting up libjpeg-turbo8:amd64 (1.4.2-0ubuntu3.1) ... build 16-Aug-2018 14:26:26 Setting up liblcms2-2:amd64 (2.6-3ubuntu2) ... build 16-Aug-2018 14:26:26 Setting up libblas-common (3.6.0-2ubuntu2) ... build 16-Aug-2018 14:26:26 Setting up libblas3 (3.6.0-2ubuntu2) ... build 16-Aug-2018 14:26:26 update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode build 16-Aug-2018 14:26:26 Setting up libsuperlu4:amd64 (4.3+dfsg-3) ... build 16-Aug-2018 14:26:26 Setting up perl-modules-5.22 (5.22.1-9ubuntu0.5) ... build 16-Aug-2018 14:26:27 Setting up libperl5.22:amd64 (5.22.1-9ubuntu0.5) ... build 16-Aug-2018 14:26:27 Setting up perl (5.22.1-9ubuntu0.5) ... build 16-Aug-2018 14:26:27 update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode build 16-Aug-2018 14:26:27 Setting up libjbig0:amd64 (2.1-3.1) ... build 16-Aug-2018 14:26:27 Setting up libmagic1:amd64 (1:5.25-2ubuntu1.1) ... build 16-Aug-2018 14:26:28 Setting up file (1:5.25-2ubuntu1.1) ... build 16-Aug-2018 14:26:28 Setting up iproute2 (4.3.0-1ubuntu3.16.04.3) ... build 16-Aug-2018 14:26:29 Setting up ifupdown (0.8.10ubuntu1.4) ... build 16-Aug-2018 14:26:30 Creating /etc/network/interfaces. build 16-Aug-2018 14:26:30 Setting up libisc-export160 (1:9.10.3.dfsg.P4-8ubuntu1.10) ... build 16-Aug-2018 14:26:30 Setting up libdns-export162 (1:9.10.3.dfsg.P4-8ubuntu1.10) ... build 16-Aug-2018 14:26:30 Setting up isc-dhcp-client (4.3.3-5ubuntu12.10) ... build 16-Aug-2018 14:26:31 Setting up isc-dhcp-common (4.3.3-5ubuntu12.10) ... build 16-Aug-2018 14:26:31 Setting up less (481-2.1ubuntu0.2) ... build 16-Aug-2018 14:26:31 debconf: unable to initialize frontend: Dialog build 16-Aug-2018 14:26:31 debconf: (TERM is not set, so the dialog frontend is not usable.) build 16-Aug-2018 14:26:31 debconf: falling back to frontend: Readline build 16-Aug-2018 14:26:31 Setting up libbsd0:amd64 (0.8.2-1) ... build 16-Aug-2018 14:26:31 Setting up libgmp10:amd64 (2:6.1.0+dfsg-2) ... build 16-Aug-2018 14:26:31 Setting up libnettle6:amd64 (3.2-1ubuntu0.16.04.1) ... build 16-Aug-2018 14:26:31 Setting up libhogweed4:amd64 (3.2-1ubuntu0.16.04.1) ... build 16-Aug-2018 14:26:32 Setting up libidn11:amd64 (1.32-3ubuntu1.2) ... build 16-Aug-2018 14:26:32 Setting up libp11-kit0:amd64 (0.23.2-5~ubuntu16.04.1) ... build 16-Aug-2018 14:26:32 Setting up libtasn1-6:amd64 (4.7-3ubuntu0.16.04.3) ... build 16-Aug-2018 14:26:32 Setting up libgnutls30:amd64 (3.4.10-4ubuntu1.4) ... build 16-Aug-2018 14:26:32 Setting up libpng12-0:amd64 (1.2.54-1ubuntu1.1) ... build 16-Aug-2018 14:26:32 Setting up libxtables11:amd64 (1.6.0-2ubuntu3) ... build 16-Aug-2018 14:26:32 Setting up netbase (5.3) ... build 16-Aug-2018 14:26:33 Setting up ucf (3.0036) ... build 16-Aug-2018 14:26:33 debconf: unable to initialize frontend: Dialog build 16-Aug-2018 14:26:33 debconf: (TERM is not set, so the dialog frontend is not usable.) build 16-Aug-2018 14:26:33 debconf: falling back to frontend: Readline build 16-Aug-2018 14:26:33 Setting up krb5-locales (1.13.2+dfsg-5ubuntu2) ... build 16-Aug-2018 14:26:33 Setting up libroken18-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 16-Aug-2018 14:26:33 Setting up libasn1-8-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 16-Aug-2018 14:26:34 Setting up libkrb5support0:amd64 (1.13.2+dfsg-5ubuntu2) ... build 16-Aug-2018 14:26:34 Setting up libk5crypto3:amd64 (1.13.2+dfsg-5ubuntu2) ... build 16-Aug-2018 14:26:34 Setting up libkeyutils1:amd64 (1.5.9-8ubuntu1) ... build 16-Aug-2018 14:26:34 Setting up libkrb5-3:amd64 (1.13.2+dfsg-5ubuntu2) ... build 16-Aug-2018 14:26:35 Setting up libgssapi-krb5-2:amd64 (1.13.2+dfsg-5ubuntu2) ... build 16-Aug-2018 14:26:35 Setting up libhcrypto4-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 16-Aug-2018 14:26:35 Setting up libheimbase1-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 16-Aug-2018 14:26:35 Setting up libwind0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 16-Aug-2018 14:26:35 Setting up libhx509-5-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 16-Aug-2018 14:26:35 Setting up libkrb5-26-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 16-Aug-2018 14:26:36 Setting up libheimntlm0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 16-Aug-2018 14:26:36 Setting up libgssapi3-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 16-Aug-2018 14:26:36 Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-14build1) ... build 16-Aug-2018 14:26:36 Setting up libsasl2-2:amd64 (2.1.26.dfsg1-14build1) ... build 16-Aug-2018 14:26:36 Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2ubuntu3.3) ... build 16-Aug-2018 14:26:36 Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d-1ubuntu0.1) ... build 16-Aug-2018 14:26:36 Setting up libcurl3-gnutls:amd64 (7.47.0-1ubuntu2.8) ... build 16-Aug-2018 14:26:37 Setting up libedit2:amd64 (3.1-20150325-1ubuntu2) ... build 16-Aug-2018 14:26:37 Setting up libicu55:amd64 (55.1-7ubuntu0.4) ... build 16-Aug-2018 14:26:37 Setting up libsasl2-modules:amd64 (2.1.26.dfsg1-14build1) ... build 16-Aug-2018 14:26:37 Setting up libxml2:amd64 (2.9.3+dfsg1-1ubuntu0.6) ... build 16-Aug-2018 14:26:37 Setting up libxmuu1:amd64 (2:1.1.2-2) ... build 16-Aug-2018 14:26:37 Setting up openssh-client (1:7.2p2-4ubuntu2.4) ... build 16-Aug-2018 14:26:38 Setting up rsync (3.1.1-3ubuntu1.2) ... build 16-Aug-2018 14:26:38 invoke-rc.d: could not determine current runlevel build 16-Aug-2018 14:26:38 invoke-rc.d: policy-rc.d denied execution of restart. build 16-Aug-2018 14:26:38 Setting up xauth (1:1.0.9-1ubuntu2) ... build 16-Aug-2018 14:26:38 Setting up xml-core (0.13+nmu2) ... build 16-Aug-2018 14:26:39 Setting up fonts-dejavu-core (2.35-1) ... build 16-Aug-2018 14:26:40 Setting up fontconfig-config (2.11.94-0ubuntu1.1) ... build 16-Aug-2018 14:26:42 Setting up libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 16-Aug-2018 14:26:42 Setting up libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 16-Aug-2018 14:26:42 Setting up liblapack3 (3.6.0-2ubuntu2) ... build 16-Aug-2018 14:26:42 update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode build 16-Aug-2018 14:26:42 Setting up libarpack2 (3.3.0-1build2) ... build 16-Aug-2018 14:26:42 Setting up libarmadillo6 (1:6.500.5+dfsg-1) ... build 16-Aug-2018 14:26:42 Setting up libdap17v5:amd64 (3.15.1-7) ... build 16-Aug-2018 14:26:43 Setting up libdapclient6v5:amd64 (3.15.1-7) ... build 16-Aug-2018 14:26:43 Setting up libepsilon1:amd64 (0.9.2-3ubuntu1) ... build 16-Aug-2018 14:26:43 Setting up libfreexl1:amd64 (1.0.2-1) ... build 16-Aug-2018 14:26:43 Setting up libgeos-3.5.0 (3.5.0-1ubuntu2) ... build 16-Aug-2018 14:26:43 Setting up libgeos-c1v5 (3.5.0-1ubuntu2) ... build 16-Aug-2018 14:26:43 Setting up libgif7:amd64 (5.1.4-0.3~16.04) ... build 16-Aug-2018 14:26:43 Setting up libjpeg8:amd64 (8c-2ubuntu8) ... build 16-Aug-2018 14:26:44 Setting up libhdf4-0-alt (4.2.10-3.2) ... build 16-Aug-2018 14:26:44 Setting up libaec0:amd64 (0.3.2-1) ... build 16-Aug-2018 14:26:45 Setting up libsz2:amd64 (0.3.2-1) ... build 16-Aug-2018 14:26:45 Setting up libhdf5-10:amd64 (1.8.16+docs-4ubuntu1) ... build 16-Aug-2018 14:26:45 Setting up libjasper1:amd64 (1.900.1-debian1-2.4ubuntu1.2) ... build 16-Aug-2018 14:26:45 Setting up libminizip1:amd64 (1.1-8) ... build 16-Aug-2018 14:26:45 Setting up liburiparser1:amd64 (0.8.4-1) ... build 16-Aug-2018 14:26:45 Setting up libkmlbase1:amd64 (1.3.0-1) ... build 16-Aug-2018 14:26:45 Setting up libkmldom1:amd64 (1.3.0-1) ... build 16-Aug-2018 14:26:45 Setting up libkmlengine1:amd64 (1.3.0-1) ... build 16-Aug-2018 14:26:46 Setting up mysql-common (5.7.23-0ubuntu0.16.04.1) ... build 16-Aug-2018 14:26:46 update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode build 16-Aug-2018 14:26:46 Setting up libmysqlclient20:amd64 (5.7.23-0ubuntu0.16.04.1) ... build 16-Aug-2018 14:26:46 Setting up libnetcdf11 (1:4.4.0-2) ... build 16-Aug-2018 14:26:46 Setting up libltdl7:amd64 (2.4.6-0.1) ... build 16-Aug-2018 14:26:46 Setting up libodbc1:amd64 (2.3.1-4.1) ... build 16-Aug-2018 14:26:46 Setting up proj-data (4.9.2-2) ... build 16-Aug-2018 14:26:47 Setting up libproj9 (4.9.2-2) ... build 16-Aug-2018 14:26:47 Setting up libogdi3.2 (3.2.0~beta2-7.1build1) ... build 16-Aug-2018 14:26:47 Setting up libopenjp2-7:amd64 (2.1.0-2.1ubuntu0.1) ... build 16-Aug-2018 14:26:47 Setting up libfreetype6:amd64 (2.6.1-0.1ubuntu2.3) ... build 16-Aug-2018 14:26:47 Setting up libfontconfig1:amd64 (2.11.94-0ubuntu1.1) ... build 16-Aug-2018 14:26:47 Setting up libtiff5:amd64 (4.0.6-1ubuntu0.4) ... build 16-Aug-2018 14:26:47 Setting up libpoppler58:amd64 (0.41.0-0ubuntu1.7) ... build 16-Aug-2018 14:26:48 Setting up libpq5:amd64 (9.5.14-0ubuntu0.16.04) ... build 16-Aug-2018 14:26:48 Setting up libspatialite7:amd64 (4.3.0a-5) ... build 16-Aug-2018 14:26:48 Setting up libwebp5:amd64 (0.4.4-1) ... build 16-Aug-2018 14:26:48 Setting up libxerces-c3.1:amd64 (3.1.3+debian-1) ... build 16-Aug-2018 14:26:48 Setting up liberror-perl (0.17-1.2) ... build 16-Aug-2018 14:26:48 Setting up git-man (1:2.7.4-0ubuntu1.4) ... build 16-Aug-2018 14:26:48 Setting up git (1:2.7.4-0ubuntu1.4) ... build 16-Aug-2018 14:26:49 Setting up p7zip-full (9.20.1~dfsg.1-4.2) ... build 16-Aug-2018 14:26:49 Setting up patch (2.7.5-1ubuntu0.16.04.1) ... build 16-Aug-2018 14:26:50 Setting up python-numpy (1:1.11.0-1ubuntu1) ... build 16-Aug-2018 14:26:52 Setting up python-pyproj (1.9.5.1-1build1) ... build 16-Aug-2018 14:26:53 Setting up rename (0.20-4) ... build 16-Aug-2018 14:26:53 update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode build 16-Aug-2018 14:26:54 Setting up proj-bin (4.9.2-2) ... build 16-Aug-2018 14:26:54 Setting up odbcinst1debian2:amd64 (2.3.1-4.1) ... build 16-Aug-2018 14:26:55 Setting up libgdal1i (1.11.3+dfsg-3build2) ... build 16-Aug-2018 14:26:55 Setting up gdal-bin (1.11.3+dfsg-3build2) ... build 16-Aug-2018 14:26:55 Setting up python-gdal (1.11.3+dfsg-3build2) ... build 16-Aug-2018 14:26:56 Setting up odbcinst (2.3.1-4.1) ... build 16-Aug-2018 14:26:57 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 16-Aug-2018 14:26:57 Processing triggers for systemd (229-4ubuntu21.2) ... build 16-Aug-2018 14:26:57 Processing triggers for sgml-base (1.26+nmu4ubuntu1) ... build 16-Aug-2018 14:26:58 Collecting pip==9.0.3 build 16-Aug-2018 14:26:58 Downloading https://files.pythonhosted.org/packages/ac/95/a05b56bb975efa78d3557efa36acaf9cf5d2fd0ee0062060493687432e03/pip-9.0.3-py2.py3-none-any.whl (1.4MB) build 16-Aug-2018 14:26:59 Installing collected packages: pip build 16-Aug-2018 14:26:59 Found existing installation: pip 8.1.1 build 16-Aug-2018 14:26:59 Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr build 16-Aug-2018 14:26:59 Successfully installed pip-9.0.3 build 16-Aug-2018 14:26:59 You are using pip version 9.0.3, however version 18.0 is available. build 16-Aug-2018 14:26:59 You should consider upgrading via the 'pip install --upgrade pip' command. build 16-Aug-2018 14:27:00 Collecting gsconfig==1.0.3 (from -r /home/clowder/requirements.txt (line 1)) build 16-Aug-2018 14:27:00 Downloading https://files.pythonhosted.org/packages/85/a9/ec6bf3d2de4763a826d6b2b569d7e1b22e8c660c3bd110bb22ea060fad39/gsconfig-1.0.3.tar.gz build 16-Aug-2018 14:27:00 Collecting pika==0.10.0 (from -r /home/clowder/requirements.txt (line 2)) build 16-Aug-2018 14:27:00 Downloading https://files.pythonhosted.org/packages/26/12/400cf0aca6b1ecf1f00dcd89b246e7a4c8558677304ba067167b8167e714/pika-0.10.0-py2.py3-none-any.whl (92kB) build 16-Aug-2018 14:27:00 Collecting requests==2.10.0 (from -r /home/clowder/requirements.txt (line 3)) build 16-Aug-2018 14:27:00 Downloading https://files.pythonhosted.org/packages/99/b4/63d99ba8e189c47d906b43bae18af4396e336f2b1bfec86af31efe2d2cb8/requests-2.10.0-py2.py3-none-any.whl (506kB) build 16-Aug-2018 14:27:00 Collecting wheel==0.24.0 (from -r /home/clowder/requirements.txt (line 4)) build 16-Aug-2018 14:27:00 Downloading https://files.pythonhosted.org/packages/e8/14/eaaac12b0432c984a27ad0050a5a0bedc6135df35a0f5f1f35228faf12d4/wheel-0.24.0-py2.py3-none-any.whl (63kB) build 16-Aug-2018 14:27:01 Collecting xmltodict==0.11.0 (from -r /home/clowder/requirements.txt (line 6)) build 16-Aug-2018 14:27:01 Downloading https://files.pythonhosted.org/packages/42/a9/7e99652c6bc619d19d58cdd8c47560730eb5825d43a7e25db2e1d776ceb7/xmltodict-0.11.0-py2.py3-none-any.whl build 16-Aug-2018 14:27:01 Collecting httplib2>=0.7.4 (from gsconfig==1.0.3->-r /home/clowder/requirements.txt (line 1)) build 16-Aug-2018 14:27:01 Downloading https://files.pythonhosted.org/packages/fd/ce/aa4a385e3e9fd351737fd2b07edaa56e7a730448465aceda6b35086a0d9b/httplib2-0.11.3.tar.gz (215kB) build 16-Aug-2018 14:27:01 Collecting gisdata==0.5.4 (from gsconfig==1.0.3->-r /home/clowder/requirements.txt (line 1)) build 16-Aug-2018 14:27:01 Downloading https://files.pythonhosted.org/packages/2a/e3/bd15b7a5d0cdd8d316b051ac3e2ec180bd09d9a144e6df35733cbdc9ca82/gisdata-0.5.4.tar.gz (1.2MB) build 16-Aug-2018 14:27:02 Installing collected packages: httplib2, gisdata, gsconfig, pika, requests, wheel, xmltodict build 16-Aug-2018 14:27:02 Running setup.py install for httplib2: started build 16-Aug-2018 14:27:02 Running setup.py install for httplib2: finished with status 'done' build 16-Aug-2018 14:27:02 Running setup.py install for gisdata: started build 16-Aug-2018 14:27:02 Running setup.py install for gisdata: finished with status 'done' build 16-Aug-2018 14:27:02 Running setup.py install for gsconfig: started build 16-Aug-2018 14:27:02 Running setup.py install for gsconfig: finished with status 'done' build 16-Aug-2018 14:27:02 Found existing installation: pika 0.11.2 build 16-Aug-2018 14:27:02 Uninstalling pika-0.11.2: build 16-Aug-2018 14:27:05 Successfully uninstalled pika-0.11.2 build 16-Aug-2018 14:27:05 Found existing installation: requests 2.18.4 build 16-Aug-2018 14:27:05 Uninstalling requests-2.18.4: build 16-Aug-2018 14:27:08 Successfully uninstalled requests-2.18.4 build 16-Aug-2018 14:27:08 Successfully installed gisdata-0.5.4 gsconfig-1.0.3 httplib2-0.11.3 pika-0.10.0 requests-2.10.0 wheel-0.24.0 xmltodict-0.11.0 build 16-Aug-2018 14:27:08 You are using pip version 9.0.3, however version 18.0 is available. build 16-Aug-2018 14:27:08 You should consider upgrading via the 'pip install --upgrade pip' command. build 16-Aug-2018 14:27:13 Removing intermediate container 90dfa0bf45c6 build 16-Aug-2018 14:27:13 ---> 98e411ddb8fc build 16-Aug-2018 14:27:13 Step 5/8 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 16-Aug-2018 14:27:13 ---> Running in 982895f599a4 build 16-Aug-2018 14:27:14 Removing intermediate container 982895f599a4 build 16-Aug-2018 14:27:14 ---> c99d6158f252 build 16-Aug-2018 14:27:14 Step 6/8 : CMD ["extractor"] build 16-Aug-2018 14:27:14 ---> Running in c21e344eb444 build 16-Aug-2018 14:27:14 Removing intermediate container c21e344eb444 build 16-Aug-2018 14:27:14 ---> 0af7b6967870 build 16-Aug-2018 14:27:14 Step 7/8 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.pycsw.extractor" MAIN_SCRIPT="ncsa.geo.pycsw.py" GEOSERVER_URL="" GEOSERVER_WORKSPACE="clowder" PYCSW_URL="http://localhost:8000/pycsw" PROXY_URL='http://localhost:9000/api/proxy/' PROXY_ON='false' build 16-Aug-2018 14:27:15 ---> Running in 03f84b31c4cc build 16-Aug-2018 14:27:15 Removing intermediate container 03f84b31c4cc build 16-Aug-2018 14:27:15 ---> 3e8965094d06 build 16-Aug-2018 14:27:15 Step 8/8 : COPY entrypoint.sh *.py extractor_info.json pycsw_insert_template.xml /home/clowder/ build 16-Aug-2018 14:27:16 ---> 42d4ffef6dc7 build 16-Aug-2018 14:27:16 Successfully built 42d4ffef6dc7 build 16-Aug-2018 14:27:16 Successfully tagged 10826:latest build 16-Aug-2018 14:27:16 Untagged: 10826:latest build 16-Aug-2018 14:27:16 Untagged: clowder/extractors-geotiff-metadata:latest build 16-Aug-2018 14:27:16 Untagged: clowder/extractors-geotiff-preview:latest build 16-Aug-2018 14:27:16 Untagged: clowder/extractors-geoshp-preview:latest build 16-Aug-2018 14:27:16 Untagged: clowder/extractors-pycsw:latest simple 16-Aug-2018 14:27:16 Finished task 'docker build' with result: Success simple 16-Aug-2018 14:27:16 Running post build plugin 'Docker Container Cleanup' simple 16-Aug-2018 14:27:16 Running post build plugin 'NCover Results Collector' simple 16-Aug-2018 14:27:16 Running post build plugin 'Clover Results Collector' simple 16-Aug-2018 14:27:16 Running post build plugin 'npm Cache Cleanup' simple 16-Aug-2018 14:27:16 Running post build plugin 'Artifact Copier' simple 16-Aug-2018 14:27:16 Finalising the build... simple 16-Aug-2018 14:27:16 Stopping timer. simple 16-Aug-2018 14:27:16 Build CATS-EXGEO13-JOB1-1 completed. simple 16-Aug-2018 14:27:16 Running on server: post build plugin 'NCover Results Collector' simple 16-Aug-2018 14:27:16 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 16-Aug-2018 14:27:16 Running on server: post build plugin 'Clover Delta Calculator' simple 16-Aug-2018 14:27:16 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 16-Aug-2018 14:27:16 All post build plugins have finished simple 16-Aug-2018 14:27:16 Generating build results summary... simple 16-Aug-2018 14:27:16 Saving build results to disk... simple 16-Aug-2018 14:27:16 Logging substituted variables... simple 16-Aug-2018 14:27:16 Indexing build results... simple 16-Aug-2018 14:27:16 Finished building CATS-EXGEO13-JOB1-1.