simple 03-Oct-2018 11:52:14 Build Clowder - extractors-maps - release-0.5.0 - Default Job #2 (CATS-EXMAPS3-JOB1-2) started building on agent buildserver-2.os.ncsa.edu simple 03-Oct-2018 11:52:14 Remote agent on host buildserver-2.os.ncsa.edu simple 03-Oct-2018 11:52:14 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXMAPS3-JOB1 simple 03-Oct-2018 11:52:14 Executing build Clowder - extractors-maps - release-0.5.0 - Default Job #2 (CATS-EXMAPS3-JOB1-2) simple 03-Oct-2018 11:52:14 Starting task 'Source Code Checkout' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 03-Oct-2018 11:52:14 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXMAPS3-JOB1 simple 03-Oct-2018 11:52:14 Updating source code to revision: 5cf17331d254f6aef97ccf6d5a65c9c6a55d8437 simple 03-Oct-2018 11:52:14 Fetching 'refs/heads/release/0.5.0' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-maps.git'. Will try to do a shallow fetch. simple 03-Oct-2018 11:52:14 Warning: Permanently added '[127.0.0.1]:34231' (RSA) to the list of known hosts. simple 03-Oct-2018 11:52:14 From ssh://127.0.0.1:34231/cats/extractors-maps simple 03-Oct-2018 11:52:14 + 6b90437...5cf1733 release/0.5.0 -> release/0.5.0 (forced update) simple 03-Oct-2018 11:52:14 Checking out revision 5cf17331d254f6aef97ccf6d5a65c9c6a55d8437. simple 03-Oct-2018 11:52:14 Already on 'release/0.5.0' simple 03-Oct-2018 11:52:14 Updated source code to revision: 5cf17331d254f6aef97ccf6d5a65c9c6a55d8437 simple 03-Oct-2018 11:52:14 Finished task 'Source Code Checkout' with result: Success simple 03-Oct-2018 11:52:14 Running pre-build action: VCS Version Collector simple 03-Oct-2018 11:52:14 Starting task 'docker build' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 03-Oct-2018 11:52:14 Beginning to execute external process for build 'Clowder - extractors-maps - release-0.5.0 - Default Job #2 (CATS-EXMAPS3-JOB1-2)'\n ... running command line: \n/bin/sh docker.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXMAPS3-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=release/0.5.0\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_planRepository_1_branchDisplayName=release/0.5.0\nbamboo_repository_revision_number=5cf17331d254f6aef97ccf6d5a65c9c6a55d8437\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-EXMAPS3-JOB1-2\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXMAPS3-JOB1\nbamboo_planRepository_1_name=extractors-maps\nbamboo_buildKey=CATS-EXMAPS3-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=release-0.5.0\nbamboo_repository_163708992_previous_revision_number=6b904377629f57c4e0903a1f57c9076f21c5eb43\nbamboo_planRepository_name=extractors-maps\nbamboo_buildNumber=2\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-EXMAPS3-JOB1-2\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-maps.git\nbamboo_repository_163708992_name=extractors-maps\nbamboo_agentId=140673028\nbamboo_planName=Clowder - extractors-maps - release-0.5.0\nbamboo_shortPlanKey=EXMAPS3\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_shortJobKey=JOB1\nbamboo_repository_163708992_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-maps.git\nbamboo_planRepository_revision=5cf17331d254f6aef97ccf6d5a65c9c6a55d8437\nbamboo_buildTimeStamp=2018-10-03T11:52:13.947-05:00\nbamboo_repository_previous_revision_number=6b904377629f57c4e0903a1f57c9076f21c5eb43\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_planRepository_previousRevision=6b904377629f57c4e0903a1f57c9076f21c5eb43\nbamboo_repository_git_branch=release/0.5.0\nbamboo_buildResultKey=CATS-EXMAPS3-JOB1-2\nbamboo_repository_branch_name=release/0.5.0\nbamboo_buildPlanName=Clowder - extractors-maps - release-0.5.0 - Default Job\nbamboo_planRepository_1_revision=5cf17331d254f6aef97ccf6d5a65c9c6a55d8437\nbamboo_repository_163708992_git_branch=release/0.5.0\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=extractors-maps\nbamboo_buildFailed=false\nbamboo_repository_163708992_revision_number=5cf17331d254f6aef97ccf6d5a65c9c6a55d8437\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_branch=release/0.5.0\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=6b904377629f57c4e0903a1f57c9076f21c5eb43\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_planRepository_branchDisplayName=release/0.5.0\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_repository_163708992_git_username=\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=release/0.5.0\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-163512449\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-maps.git\nbamboo_repository_163708992_branch_name=release/0.5.0\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXMAPS3-JOB1\nbamboo_planKey=CATS-EXMAPS3\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-maps.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_1_branchName=release/0.5.0\n build 03-Oct-2018 11:52:14 Sending build context to Docker daemon 75.78kB build 03-Oct-2018 11:52:14 build 03-Oct-2018 11:52:14 Step 1/10 : FROM clowder/pyclowder:1 build 03-Oct-2018 11:52:14 ---> d1a9e970ed30 build 03-Oct-2018 11:52:14 Step 2/10 : MAINTAINER Marcus Slavenas build 03-Oct-2018 11:52:14 ---> Using cache build 03-Oct-2018 11:52:14 ---> 2000db97c676 build 03-Oct-2018 11:52:14 Step 3/10 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.greenindex" REGISTRATION_ENDPOINTS="https://clowder.ncsa.illinois.edu/extractors" GOOGLE_MAP_APIKEY="" MAIN_SCRIPT="extractor.py" build 03-Oct-2018 11:52:14 ---> Using cache build 03-Oct-2018 11:52:14 ---> ce8b66dca527 build 03-Oct-2018 11:52:14 Step 4/10 : USER root build 03-Oct-2018 11:52:14 ---> Using cache build 03-Oct-2018 11:52:14 ---> 24f06a511758 build 03-Oct-2018 11:52:14 Step 5/10 : RUN apt-get update && apt-get install -y python-opencv python-geopy opencv-data python3-lxml && pip install numpy && pip install lxml && pip install xmltodict build 03-Oct-2018 11:52:14 ---> Using cache build 03-Oct-2018 11:52:14 ---> be7c9c166b32 build 03-Oct-2018 11:52:14 Step 6/10 : USER clowder build 03-Oct-2018 11:52:14 ---> Using cache build 03-Oct-2018 11:52:14 ---> 5c5b677710f9 build 03-Oct-2018 11:52:14 Step 7/10 : COPY entrypoint.sh *.py extractor_info.json /home/clowder/ build 03-Oct-2018 11:52:14 ---> Using cache build 03-Oct-2018 11:52:14 ---> fd7297c736d6 build 03-Oct-2018 11:52:14 Step 8/10 : COPY src /home/clowder/src build 03-Oct-2018 11:52:14 ---> Using cache build 03-Oct-2018 11:52:14 ---> 937348aa477b build 03-Oct-2018 11:52:14 Step 9/10 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 03-Oct-2018 11:52:14 ---> Using cache build 03-Oct-2018 11:52:14 ---> a345ee8eacc9 build 03-Oct-2018 11:52:14 Step 10/10 : CMD ["extractor"] build 03-Oct-2018 11:52:14 ---> Using cache build 03-Oct-2018 11:52:14 ---> 10643e121f68 build 03-Oct-2018 11:52:14 Successfully built 10643e121f68 build 03-Oct-2018 11:52:15 Successfully tagged clowder/extractors-greenroute:latest build 03-Oct-2018 11:52:15 Sending build context to Docker daemon 901.1kB build 03-Oct-2018 11:52:15 build 03-Oct-2018 11:52:15 Step 1/10 : FROM clowder/pyclowder:2 build 03-Oct-2018 11:52:15 ---> 5e2caea6057a build 03-Oct-2018 11:52:15 Step 2/10 : MAINTAINER Marcus Slavenas build 03-Oct-2018 11:52:15 ---> Using cache build 03-Oct-2018 11:52:15 ---> 5f9c8dca61dd build 03-Oct-2018 11:52:15 Step 3/10 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="ncsa.humanpref" REGISTRATION_ENDPOINTS="https://clowder.ncsa.illinois.edu/extractors" MAIN_SCRIPT="extractor.py" build 03-Oct-2018 11:52:15 ---> Using cache build 03-Oct-2018 11:52:15 ---> 9ccb8450e3d6 build 03-Oct-2018 11:52:15 Step 4/10 : USER root build 03-Oct-2018 11:52:15 ---> Using cache build 03-Oct-2018 11:52:15 ---> ff89ff3e1f6a build 03-Oct-2018 11:52:15 Step 5/10 : RUN apt-get update && pip install numpy && apt-get install -y python-opencv opencv-data && mkdir -p /matlab build 03-Oct-2018 11:52:15 ---> Using cache build 03-Oct-2018 11:52:15 ---> 81fc09d95c5d build 03-Oct-2018 11:52:15 Step 6/10 : COPY entrypoint.sh *.py extractor_info.json /home/clowder/ build 03-Oct-2018 11:52:15 ---> Using cache build 03-Oct-2018 11:52:15 ---> f2cca3589a6b build 03-Oct-2018 11:52:15 Step 7/10 : COPY src_gi /home/clowder/src_gi build 03-Oct-2018 11:52:15 ---> Using cache build 03-Oct-2018 11:52:15 ---> ec9dce2eee41 build 03-Oct-2018 11:52:15 Step 8/10 : COPY src_hp /home/clowder/src_hp build 03-Oct-2018 11:52:15 ---> Using cache build 03-Oct-2018 11:52:15 ---> 3d64f4732785 build 03-Oct-2018 11:52:15 Step 9/10 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 03-Oct-2018 11:52:15 ---> Using cache build 03-Oct-2018 11:52:15 ---> 91752eaa2611 build 03-Oct-2018 11:52:15 Step 10/10 : CMD ["extractor"] build 03-Oct-2018 11:52:15 ---> Using cache build 03-Oct-2018 11:52:15 ---> 74e1dc03c513 build 03-Oct-2018 11:52:15 Successfully built 74e1dc03c513 build 03-Oct-2018 11:52:15 Successfully tagged clowder/extractors-human-preference:latest build 03-Oct-2018 11:52:15 Sending build context to Docker daemon 5.489MB build 03-Oct-2018 11:52:15 build 03-Oct-2018 11:52:15 Step 1/15 : FROM clowder/pyclowder:1 build 03-Oct-2018 11:52:15 ---> d1a9e970ed30 build 03-Oct-2018 11:52:15 Step 2/15 : MAINTAINER Rob Kooper build 03-Oct-2018 11:52:15 ---> Running in b69f0651e21b build 03-Oct-2018 11:52:15 Removing intermediate container b69f0651e21b build 03-Oct-2018 11:52:15 ---> 59a21478a224 build 03-Oct-2018 11:52:15 Step 3/15 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.maps.tuv" MAIN_SCRIPT="extractor-tuv.py" build 03-Oct-2018 11:52:15 ---> Running in c34d97a7a4b3 build 03-Oct-2018 11:52:16 Removing intermediate container c34d97a7a4b3 build 03-Oct-2018 11:52:16 ---> 51ee4d19b39c build 03-Oct-2018 11:52:16 Step 4/15 : USER root build 03-Oct-2018 11:52:16 ---> Running in 4d79f74527cc build 03-Oct-2018 11:52:16 Removing intermediate container 4d79f74527cc build 03-Oct-2018 11:52:16 ---> b487cf35c602 build 03-Oct-2018 11:52:16 Step 5/15 : RUN apt-get update && apt-get upgrade -y -q && apt-get install -y -q r-base r-cran-rgl libxml2-dev mesa-common-dev libssl-dev libcurl4-openssl-dev libcairo2-dev libmariadb-client-lgpl-dev libmagick++-dev libglu1-mesa-dev build 03-Oct-2018 11:52:17 ---> Running in 51bf738112f5 build 03-Oct-2018 11:52:18 Get:1 http://archive.ubuntu.com/ubuntu xenial InRelease [247 kB] build 03-Oct-2018 11:52:18 Get:2 http://security.ubuntu.com/ubuntu xenial-security InRelease [107 kB] build 03-Oct-2018 11:52:18 Get:3 http://security.ubuntu.com/ubuntu xenial-security/universe Sources [95.4 kB] build 03-Oct-2018 11:52:18 Get:4 http://archive.ubuntu.com/ubuntu xenial-updates InRelease [109 kB] build 03-Oct-2018 11:52:18 Get:5 http://archive.ubuntu.com/ubuntu xenial-backports InRelease [107 kB] build 03-Oct-2018 11:52:18 Get:6 http://security.ubuntu.com/ubuntu xenial-security/main amd64 Packages [718 kB] build 03-Oct-2018 11:52:18 Get:7 http://archive.ubuntu.com/ubuntu xenial/universe Sources [9802 kB] build 03-Oct-2018 11:52:19 Get:8 http://security.ubuntu.com/ubuntu xenial-security/restricted amd64 Packages [12.7 kB] build 03-Oct-2018 11:52:19 Get:9 http://security.ubuntu.com/ubuntu xenial-security/universe amd64 Packages [491 kB] build 03-Oct-2018 11:52:19 Get:10 http://security.ubuntu.com/ubuntu xenial-security/multiverse amd64 Packages [3744 B] build 03-Oct-2018 11:52:19 Get:11 http://archive.ubuntu.com/ubuntu xenial/main amd64 Packages [1558 kB] build 03-Oct-2018 11:52:19 Get:12 http://archive.ubuntu.com/ubuntu xenial/restricted amd64 Packages [14.1 kB] build 03-Oct-2018 11:52:19 Get:13 http://archive.ubuntu.com/ubuntu xenial/universe amd64 Packages [9827 kB] build 03-Oct-2018 11:52:19 Get:14 http://archive.ubuntu.com/ubuntu xenial/multiverse amd64 Packages [176 kB] build 03-Oct-2018 11:52:19 Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/universe Sources [280 kB] build 03-Oct-2018 11:52:19 Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 Packages [1106 kB] build 03-Oct-2018 11:52:19 Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/restricted amd64 Packages [13.1 kB] build 03-Oct-2018 11:52:19 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 Packages [888 kB] build 03-Oct-2018 11:52:19 Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/multiverse amd64 Packages [18.8 kB] build 03-Oct-2018 11:52:19 Get:20 http://archive.ubuntu.com/ubuntu xenial-backports/main amd64 Packages [7343 B] build 03-Oct-2018 11:52:19 Get:21 http://archive.ubuntu.com/ubuntu xenial-backports/universe amd64 Packages [8256 B] build 03-Oct-2018 11:52:21 Fetched 25.6 MB in 3s (8076 kB/s) build 03-Oct-2018 11:52:22 Reading package lists... build 03-Oct-2018 11:52:22 Reading package lists... build 03-Oct-2018 11:52:23 Building dependency tree... build 03-Oct-2018 11:52:23 Reading state information... build 03-Oct-2018 11:52:23 Calculating upgrade... build 03-Oct-2018 11:52:23 The following packages will be upgraded: build 03-Oct-2018 11:52:23 apt base-files bsdutils ca-certificates dpkg gcc-5-base gnupg gpgv build 03-Oct-2018 11:52:23 libapparmor1 libapt-pkg5.0 libaudit-common libaudit1 libblkid1 libc-bin build 03-Oct-2018 11:52:23 libc6 libdb5.3 libfdisk1 libgcrypt20 libmount1 libpam-modules build 03-Oct-2018 11:52:23 libpam-modules-bin libpam-runtime libpam0g libprocps4 libpython-stdlib build 03-Oct-2018 11:52:23 libpython2.7-minimal libpython2.7-stdlib libseccomp2 libsmartcols1 build 03-Oct-2018 11:52:23 libssl1.0.0 libstdc++6 libsystemd0 libudev1 libuuid1 mount multiarch-support build 03-Oct-2018 11:52:23 openssl perl-base procps python python-minimal python2.7 python2.7-minimal build 03-Oct-2018 11:52:23 sensible-utils systemd systemd-sysv util-linux build 03-Oct-2018 11:52:23 47 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. build 03-Oct-2018 11:52:23 Need to get 22.3 MB of archives. build 03-Oct-2018 11:52:23 After this operation, 112 kB disk space will be freed. build 03-Oct-2018 11:52:23 Get:1 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 base-files amd64 9.4ubuntu4.7 [65.9 kB] build 03-Oct-2018 11:52:23 Get:2 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 bsdutils amd64 1:2.27.1-6ubuntu3.6 [51.2 kB] build 03-Oct-2018 11:52:23 Get:3 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 dpkg amd64 1.18.4ubuntu1.4 [2088 kB] build 03-Oct-2018 11:52:24 Get:4 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 util-linux amd64 2.27.1-6ubuntu3.6 [848 kB] build 03-Oct-2018 11:52:24 Get:5 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 mount amd64 2.27.1-6ubuntu3.6 [121 kB] build 03-Oct-2018 11:52:24 Get:6 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 perl-base amd64 5.22.1-9ubuntu0.5 [1284 kB] build 03-Oct-2018 11:52:24 Get:7 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc6 amd64 2.23-0ubuntu10 [2580 kB] build 03-Oct-2018 11:52:24 Get:8 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc-bin amd64 2.23-0ubuntu10 [641 kB] build 03-Oct-2018 11:52:24 Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gcc-5-base amd64 5.4.0-6ubuntu1~16.04.10 [17.3 kB] build 03-Oct-2018 11:52:24 Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libstdc++6 amd64 5.4.0-6ubuntu1~16.04.10 [393 kB] build 03-Oct-2018 11:52:24 Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libapt-pkg5.0 amd64 1.2.27 [706 kB] build 03-Oct-2018 11:52:24 Get:12 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gpgv amd64 1.4.20-1ubuntu3.3 [165 kB] build 03-Oct-2018 11:52:24 Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gnupg amd64 1.4.20-1ubuntu3.3 [626 kB] build 03-Oct-2018 11:52:24 Get:14 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 apt amd64 1.2.27 [1042 kB] build 03-Oct-2018 11:52:24 Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libaudit-common all 1:2.4.5-1ubuntu2.1 [3924 B] build 03-Oct-2018 11:52:24 Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libaudit1 amd64 1:2.4.5-1ubuntu2.1 [36.2 kB] build 03-Oct-2018 11:52:24 Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpam0g amd64 1.1.8-3.2ubuntu2.1 [55.6 kB] build 03-Oct-2018 11:52:24 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpam-modules-bin amd64 1.1.8-3.2ubuntu2.1 [36.9 kB] build 03-Oct-2018 11:52:24 Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpam-modules amd64 1.1.8-3.2ubuntu2.1 [244 kB] build 03-Oct-2018 11:52:24 Get:20 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libapparmor1 amd64 2.10.95-0ubuntu2.9 [29.9 kB] build 03-Oct-2018 11:52:24 Get:21 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libuuid1 amd64 2.27.1-6ubuntu3.6 [15.1 kB] build 03-Oct-2018 11:52:24 Get:22 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libblkid1 amd64 2.27.1-6ubuntu3.6 [107 kB] build 03-Oct-2018 11:52:24 Get:23 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmount1 amd64 2.27.1-6ubuntu3.6 [114 kB] build 03-Oct-2018 11:52:24 Get:24 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libseccomp2 amd64 2.3.1-2.1ubuntu2~16.04.1 [38.7 kB] build 03-Oct-2018 11:52:24 Get:25 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libsystemd0 amd64 229-4ubuntu21.4 [204 kB] build 03-Oct-2018 11:52:24 Get:26 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 systemd amd64 229-4ubuntu21.4 [3615 kB] build 03-Oct-2018 11:52:25 Get:27 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 systemd-sysv amd64 229-4ubuntu21.4 [11.6 kB] build 03-Oct-2018 11:52:25 Get:28 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7 amd64 2.7.12-1ubuntu0~16.04.3 [224 kB] build 03-Oct-2018 11:52:25 Get:29 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdb5.3 amd64 5.3.28-11ubuntu0.1 [670 kB] build 03-Oct-2018 11:52:25 Get:30 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libssl1.0.0 amd64 1.0.2g-1ubuntu4.13 [1083 kB] build 03-Oct-2018 11:52:25 Get:31 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-stdlib amd64 2.7.12-1ubuntu0~16.04.3 [1880 kB] build 03-Oct-2018 11:52:25 Get:32 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7-minimal amd64 2.7.12-1ubuntu0~16.04.3 [1261 kB] build 03-Oct-2018 11:52:25 Get:33 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-minimal amd64 2.7.12-1ubuntu0~16.04.3 [340 kB] build 03-Oct-2018 11:52:25 Get:34 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-minimal amd64 2.7.12-1~16.04 [28.1 kB] build 03-Oct-2018 11:52:25 Get:35 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python amd64 2.7.12-1~16.04 [137 kB] build 03-Oct-2018 11:52:25 Get:36 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython-stdlib amd64 2.7.12-1~16.04 [7768 B] build 03-Oct-2018 11:52:25 Get:37 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfdisk1 amd64 2.27.1-6ubuntu3.6 [138 kB] build 03-Oct-2018 11:52:25 Get:38 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgcrypt20 amd64 1.6.5-2ubuntu0.5 [338 kB] build 03-Oct-2018 11:52:25 Get:39 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpam-runtime all 1.1.8-3.2ubuntu2.1 [37.9 kB] build 03-Oct-2018 11:52:25 Get:40 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libsmartcols1 amd64 2.27.1-6ubuntu3.6 [62.7 kB] build 03-Oct-2018 11:52:25 Get:41 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libudev1 amd64 229-4ubuntu21.4 [54.1 kB] build 03-Oct-2018 11:52:25 Get:42 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 multiarch-support amd64 2.23-0ubuntu10 [6826 B] build 03-Oct-2018 11:52:25 Get:43 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 sensible-utils all 0.0.9ubuntu0.16.04.1 [10.0 kB] build 03-Oct-2018 11:52:25 Get:44 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libprocps4 amd64 2:3.3.10-4ubuntu2.4 [33.1 kB] build 03-Oct-2018 11:52:25 Get:45 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 procps amd64 2:3.3.10-4ubuntu2.4 [222 kB] build 03-Oct-2018 11:52:25 Get:46 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 openssl amd64 1.0.2g-1ubuntu4.13 [492 kB] build 03-Oct-2018 11:52:25 Get:47 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 ca-certificates all 20170717~16.04.1 [168 kB] build 03-Oct-2018 11:52:25 debconf: delaying package configuration, since apt-utils is not installed build 03-Oct-2018 11:52:25 Fetched 22.3 MB in 2s (10.4 MB/s) build 03-Oct-2018 11:52:26 (Reading database ... build 03-Oct-2018 11:52:26 (Reading database ... 5% build 03-Oct-2018 11:52:26 (Reading database ... 10% build 03-Oct-2018 11:52:26 (Reading database ... 15% build 03-Oct-2018 11:52:26 (Reading database ... 20% build 03-Oct-2018 11:52:26 (Reading database ... 25% build 03-Oct-2018 11:52:26 (Reading database ... 30% build 03-Oct-2018 11:52:26 (Reading database ... 35% build 03-Oct-2018 11:52:26 (Reading database ... 40% build 03-Oct-2018 11:52:26 (Reading database ... 45% build 03-Oct-2018 11:52:26 (Reading database ... 50% build 03-Oct-2018 11:52:26 (Reading database ... 55% build 03-Oct-2018 11:52:26 (Reading database ... 60% build 03-Oct-2018 11:52:26 (Reading database ... 65% build 03-Oct-2018 11:52:26 (Reading database ... 70% build 03-Oct-2018 11:52:26 (Reading database ... 75% build 03-Oct-2018 11:52:26 (Reading database ... 80% build 03-Oct-2018 11:52:26 (Reading database ... 85% build 03-Oct-2018 11:52:26 (Reading database ... 90% build 03-Oct-2018 11:52:26 (Reading database ... 95% build 03-Oct-2018 11:52:26 (Reading database ... 100% build 03-Oct-2018 11:52:26 (Reading database ... 6101 files and directories currently installed.) build 03-Oct-2018 11:52:26 Preparing to unpack .../base-files_9.4ubuntu4.7_amd64.deb ... build 03-Oct-2018 11:52:26 Unpacking base-files (9.4ubuntu4.7) over (9.4ubuntu4.5) ... build 03-Oct-2018 11:52:27 Setting up base-files (9.4ubuntu4.7) ... build 03-Oct-2018 11:52:27 Installing new version of config file /etc/issue ... build 03-Oct-2018 11:52:27 Installing new version of config file /etc/issue.net ... build 03-Oct-2018 11:52:27 Installing new version of config file /etc/lsb-release ... build 03-Oct-2018 11:52:28 (Reading database ... build 03-Oct-2018 11:52:28 (Reading database ... 5% build 03-Oct-2018 11:52:28 (Reading database ... 10% build 03-Oct-2018 11:52:28 (Reading database ... 15% build 03-Oct-2018 11:52:28 (Reading database ... 20% build 03-Oct-2018 11:52:28 (Reading database ... 25% build 03-Oct-2018 11:52:28 (Reading database ... 30% build 03-Oct-2018 11:52:28 (Reading database ... 35% build 03-Oct-2018 11:52:28 (Reading database ... 40% 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... build 03-Oct-2018 11:52:29 (Reading database ... build 03-Oct-2018 11:52:29 (Reading database ... 5% build 03-Oct-2018 11:52:29 (Reading database ... 10% build 03-Oct-2018 11:52:29 (Reading database ... 15% build 03-Oct-2018 11:52:29 (Reading database ... 20% build 03-Oct-2018 11:52:29 (Reading database ... 25% build 03-Oct-2018 11:52:29 (Reading database ... 30% build 03-Oct-2018 11:52:29 (Reading database ... 35% build 03-Oct-2018 11:52:29 (Reading database ... 40% build 03-Oct-2018 11:52:29 (Reading database ... 45% build 03-Oct-2018 11:52:29 (Reading database ... 50% build 03-Oct-2018 11:52:29 (Reading database ... 55% build 03-Oct-2018 11:52:29 (Reading database ... 60% build 03-Oct-2018 11:52:29 (Reading database ... 65% build 03-Oct-2018 11:52:29 (Reading database ... 70% build 03-Oct-2018 11:52:29 (Reading database ... 75% build 03-Oct-2018 11:52:29 (Reading database ... 80% build 03-Oct-2018 11:52:29 (Reading database ... 85% build 03-Oct-2018 11:52:29 (Reading database 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(2.27.1-6ubuntu3.6) ... build 03-Oct-2018 11:52:46 Processing triggers for systemd (229-4ubuntu19) ... build 03-Oct-2018 11:52:47 (Reading database ... build 03-Oct-2018 11:52:47 (Reading database ... 5% build 03-Oct-2018 11:52:47 (Reading database ... 10% build 03-Oct-2018 11:52:47 (Reading database ... 15% build 03-Oct-2018 11:52:47 (Reading database ... 20% build 03-Oct-2018 11:52:47 (Reading database ... 25% build 03-Oct-2018 11:52:47 (Reading database ... 30% build 03-Oct-2018 11:52:47 (Reading database ... 35% build 03-Oct-2018 11:52:47 (Reading database ... 40% build 03-Oct-2018 11:52:47 (Reading database ... 45% build 03-Oct-2018 11:52:47 (Reading database ... 50% build 03-Oct-2018 11:52:47 (Reading database ... 55% build 03-Oct-2018 11:52:47 (Reading database ... 60% build 03-Oct-2018 11:52:47 (Reading database ... 65% build 03-Oct-2018 11:52:47 (Reading database ... 70% build 03-Oct-2018 11:52:47 (Reading database ... 75% build 03-Oct-2018 11:52:47 (Reading database ... 80% 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11:52:49 (Reading database ... 40% build 03-Oct-2018 11:52:49 (Reading database ... 45% build 03-Oct-2018 11:52:49 (Reading database ... 50% build 03-Oct-2018 11:52:49 (Reading database ... 55% build 03-Oct-2018 11:52:49 (Reading database ... 60% build 03-Oct-2018 11:52:49 (Reading database ... 65% build 03-Oct-2018 11:52:49 (Reading database ... 70% build 03-Oct-2018 11:52:49 (Reading database ... 75% build 03-Oct-2018 11:52:49 (Reading database ... 80% build 03-Oct-2018 11:52:49 (Reading database ... 85% build 03-Oct-2018 11:52:49 (Reading database ... 90% build 03-Oct-2018 11:52:49 (Reading database ... 95% build 03-Oct-2018 11:52:49 (Reading database ... 100% build 03-Oct-2018 11:52:49 (Reading database ... 6101 files and directories currently installed.) build 03-Oct-2018 11:52:49 Preparing to unpack .../perl-base_5.22.1-9ubuntu0.5_amd64.deb ... build 03-Oct-2018 11:52:49 Unpacking perl-base (5.22.1-9ubuntu0.5) over (5.22.1-9) ... build 03-Oct-2018 11:53:02 Setting up perl-base (5.22.1-9ubuntu0.5) ... build 03-Oct-2018 11:53:02 (Reading database ... build 03-Oct-2018 11:53:02 (Reading database ... 5% build 03-Oct-2018 11:53:02 (Reading database ... 10% build 03-Oct-2018 11:53:02 (Reading database ... 15% build 03-Oct-2018 11:53:02 (Reading database ... 20% build 03-Oct-2018 11:53:02 (Reading database ... 25% build 03-Oct-2018 11:53:02 (Reading database ... 30% build 03-Oct-2018 11:53:02 (Reading database ... 35% build 03-Oct-2018 11:53:02 (Reading database ... 40% build 03-Oct-2018 11:53:02 (Reading database ... 45% build 03-Oct-2018 11:53:02 (Reading database ... 50% build 03-Oct-2018 11:53:02 (Reading database ... 55% build 03-Oct-2018 11:53:02 (Reading database ... 60% build 03-Oct-2018 11:53:02 (Reading database ... 65% build 03-Oct-2018 11:53:02 (Reading database ... 70% build 03-Oct-2018 11:53:02 (Reading database ... 75% build 03-Oct-2018 11:53:02 (Reading database ... 80% build 03-Oct-2018 11:53:02 (Reading database ... 85% build 03-Oct-2018 11:53:02 (Reading database ... 90% build 03-Oct-2018 11:53:02 (Reading database ... 95% build 03-Oct-2018 11:53:02 (Reading database ... 100% build 03-Oct-2018 11:53:02 (Reading database ... 6101 files and directories currently installed.) build 03-Oct-2018 11:53:02 Preparing to unpack .../libc6_2.23-0ubuntu10_amd64.deb ... build 03-Oct-2018 11:53:03 debconf: unable to initialize frontend: Dialog build 03-Oct-2018 11:53:03 debconf: (TERM is not set, so the dialog frontend is not usable.) build 03-Oct-2018 11:53:03 debconf: falling back to frontend: Readline build 03-Oct-2018 11:53:03 debconf: unable to initialize frontend: Readline build 03-Oct-2018 11:53:03 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) build 03-Oct-2018 11:53:03 debconf: falling back to frontend: Teletype build 03-Oct-2018 11:53:03 Unpacking libc6:amd64 (2.23-0ubuntu10) over (2.23-0ubuntu9) ... build 03-Oct-2018 11:53:11 Setting up libc6:amd64 (2.23-0ubuntu10) ... build 03-Oct-2018 11:53:12 debconf: unable to initialize frontend: Dialog build 03-Oct-2018 11:53:12 debconf: (TERM is not set, so the dialog frontend is not usable.) build 03-Oct-2018 11:53:12 debconf: falling back to frontend: Readline build 03-Oct-2018 11:53:12 debconf: unable to initialize frontend: Readline build 03-Oct-2018 11:53:12 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) build 03-Oct-2018 11:53:12 debconf: falling back to frontend: Teletype build 03-Oct-2018 11:53:13 Processing triggers for libc-bin (2.23-0ubuntu9) ... build 03-Oct-2018 11:53:13 (Reading database ... build 03-Oct-2018 11:53:13 (Reading database ... 5% build 03-Oct-2018 11:53:13 (Reading database ... 10% build 03-Oct-2018 11:53:13 (Reading database ... 15% build 03-Oct-2018 11:53:13 (Reading database ... 20% build 03-Oct-2018 11:53:13 (Reading database ... 25% build 03-Oct-2018 11:53:13 (Reading database ... 30% build 03-Oct-2018 11:53:13 (Reading database ... 35% build 03-Oct-2018 11:53:13 (Reading database ... 40% build 03-Oct-2018 11:53:13 (Reading database ... 45% build 03-Oct-2018 11:53:13 (Reading database ... 50% build 03-Oct-2018 11:53:13 (Reading database ... 55% build 03-Oct-2018 11:53:13 (Reading database ... 60% build 03-Oct-2018 11:53:13 (Reading database ... 65% build 03-Oct-2018 11:53:13 (Reading database ... 70% build 03-Oct-2018 11:53:13 (Reading database ... 75% build 03-Oct-2018 11:53:13 (Reading database ... 80% build 03-Oct-2018 11:53:13 (Reading database ... 85% build 03-Oct-2018 11:53:13 (Reading database ... 90% build 03-Oct-2018 11:53:13 (Reading database ... 95% build 03-Oct-2018 11:53:13 (Reading database ... 100% build 03-Oct-2018 11:53:13 (Reading database ... 6101 files and directories currently installed.) build 03-Oct-2018 11:53:13 Preparing to unpack .../libc-bin_2.23-0ubuntu10_amd64.deb ... build 03-Oct-2018 11:53:13 Unpacking libc-bin (2.23-0ubuntu10) over (2.23-0ubuntu9) ... build 03-Oct-2018 11:53:15 Setting up libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:53:15 (Reading database ... build 03-Oct-2018 11:53:15 (Reading database ... 5% build 03-Oct-2018 11:53:15 (Reading database ... 10% build 03-Oct-2018 11:53:15 (Reading database ... 15% build 03-Oct-2018 11:53:15 (Reading database ... 20% build 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.../gcc-5-base_5.4.0-6ubuntu1~16.04.10_amd64.deb ... build 03-Oct-2018 11:53:15 Unpacking gcc-5-base:amd64 (5.4.0-6ubuntu1~16.04.10) over (5.4.0-6ubuntu1~16.04.4) ... build 03-Oct-2018 11:53:16 Setting up gcc-5-base:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 03-Oct-2018 11:53:16 (Reading database ... build 03-Oct-2018 11:53:16 (Reading database ... 5% build 03-Oct-2018 11:53:16 (Reading database ... 10% build 03-Oct-2018 11:53:16 (Reading database ... 15% build 03-Oct-2018 11:53:16 (Reading database ... 20% build 03-Oct-2018 11:53:16 (Reading database ... 25% build 03-Oct-2018 11:53:16 (Reading database ... 30% build 03-Oct-2018 11:53:16 (Reading database ... 35% build 03-Oct-2018 11:53:16 (Reading database ... 40% build 03-Oct-2018 11:53:16 (Reading database ... 45% build 03-Oct-2018 11:53:16 (Reading database ... 50% build 03-Oct-2018 11:53:16 (Reading database ... 55% build 03-Oct-2018 11:53:16 (Reading database ... 60% build 03-Oct-2018 11:53:16 (Reading database ... 65% build 03-Oct-2018 11:53:16 (Reading database ... 70% build 03-Oct-2018 11:53:16 (Reading database ... 75% build 03-Oct-2018 11:53:16 (Reading database ... 80% build 03-Oct-2018 11:53:16 (Reading database ... 85% build 03-Oct-2018 11:53:16 (Reading database ... 90% build 03-Oct-2018 11:53:16 (Reading database ... 95% build 03-Oct-2018 11:53:16 (Reading database ... 100% build 03-Oct-2018 11:53:16 (Reading database ... 6101 files and directories currently installed.) build 03-Oct-2018 11:53:16 Preparing to unpack .../libstdc++6_5.4.0-6ubuntu1~16.04.10_amd64.deb ... build 03-Oct-2018 11:53:16 Unpacking libstdc++6:amd64 (5.4.0-6ubuntu1~16.04.10) over (5.4.0-6ubuntu1~16.04.4) ... build 03-Oct-2018 11:53:17 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:53:17 Setting up libstdc++6:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 03-Oct-2018 11:53:17 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:53:18 (Reading database ... build 03-Oct-2018 11:53:18 (Reading database ... 5% build 03-Oct-2018 11:53:18 (Reading database ... 10% build 03-Oct-2018 11:53:18 (Reading database ... 15% build 03-Oct-2018 11:53:18 (Reading database ... 20% build 03-Oct-2018 11:53:18 (Reading database ... 25% build 03-Oct-2018 11:53:18 (Reading database ... 30% build 03-Oct-2018 11:53:18 (Reading database ... 35% build 03-Oct-2018 11:53:18 (Reading database ... 40% build 03-Oct-2018 11:53:18 (Reading database ... 45% build 03-Oct-2018 11:53:18 (Reading database ... 50% build 03-Oct-2018 11:53:18 (Reading database ... 55% build 03-Oct-2018 11:53:18 (Reading database ... 60% build 03-Oct-2018 11:53:18 (Reading database ... 65% build 03-Oct-2018 11:53:18 (Reading database ... 70% build 03-Oct-2018 11:53:18 (Reading database ... 75% build 03-Oct-2018 11:53:18 (Reading database ... 80% build 03-Oct-2018 11:53:18 (Reading database ... 85% build 03-Oct-2018 11:53:18 (Reading database ... 90% build 03-Oct-2018 11:53:18 (Reading database ... 95% build 03-Oct-2018 11:53:18 (Reading database ... 100% build 03-Oct-2018 11:53:18 (Reading database ... 6101 files and directories currently installed.) build 03-Oct-2018 11:53:18 Preparing to unpack .../libapt-pkg5.0_1.2.27_amd64.deb ... build 03-Oct-2018 11:53:18 Unpacking libapt-pkg5.0:amd64 (1.2.27) over (1.2.24) ... build 03-Oct-2018 11:53:19 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:53:20 Setting up libapt-pkg5.0:amd64 (1.2.27) ... build 03-Oct-2018 11:53:20 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:53:20 (Reading database ... build 03-Oct-2018 11:53:20 (Reading database ... 5% build 03-Oct-2018 11:53:20 (Reading database ... 10% build 03-Oct-2018 11:53:20 (Reading database ... 15% build 03-Oct-2018 11:53:20 (Reading database ... 20% build 03-Oct-2018 11:53:20 (Reading database ... 25% build 03-Oct-2018 11:53:20 (Reading database ... 30% build 03-Oct-2018 11:53:20 (Reading database ... 35% build 03-Oct-2018 11:53:20 (Reading database ... 40% build 03-Oct-2018 11:53:20 (Reading database ... 45% build 03-Oct-2018 11:53:20 (Reading database ... 50% build 03-Oct-2018 11:53:20 (Reading database ... 55% build 03-Oct-2018 11:53:20 (Reading database ... 60% build 03-Oct-2018 11:53:20 (Reading database ... 65% build 03-Oct-2018 11:53:20 (Reading database ... 70% build 03-Oct-2018 11:53:20 (Reading database ... 75% build 03-Oct-2018 11:53:20 (Reading database ... 80% build 03-Oct-2018 11:53:20 (Reading database ... 85% build 03-Oct-2018 11:53:20 (Reading database ... 90% build 03-Oct-2018 11:53:20 (Reading database ... 95% build 03-Oct-2018 11:53:20 (Reading database ... 100% build 03-Oct-2018 11:53:20 (Reading database ... 6101 files and directories currently installed.) build 03-Oct-2018 11:53:20 Preparing to unpack .../gpgv_1.4.20-1ubuntu3.3_amd64.deb ... build 03-Oct-2018 11:53:20 Unpacking gpgv (1.4.20-1ubuntu3.3) over (1.4.20-1ubuntu3.1) ... build 03-Oct-2018 11:53:21 Setting up gpgv (1.4.20-1ubuntu3.3) ... build 03-Oct-2018 11:53:22 (Reading database ... build 03-Oct-2018 11:53:22 (Reading database ... 5% build 03-Oct-2018 11:53:22 (Reading database ... 10% build 03-Oct-2018 11:53:22 (Reading database ... 15% build 03-Oct-2018 11:53:22 (Reading database ... 20% build 03-Oct-2018 11:53:22 (Reading database ... 25% build 03-Oct-2018 11:53:22 (Reading database ... 30% build 03-Oct-2018 11:53:22 (Reading database ... 35% build 03-Oct-2018 11:53:22 (Reading database ... 40% build 03-Oct-2018 11:53:22 (Reading database ... 45% build 03-Oct-2018 11:53:22 (Reading database ... 50% build 03-Oct-2018 11:53:22 (Reading database ... 55% build 03-Oct-2018 11:53:22 (Reading database ... 60% build 03-Oct-2018 11:53:22 (Reading database ... 65% build 03-Oct-2018 11:53:22 (Reading database ... 70% build 03-Oct-2018 11:53:22 (Reading database ... 75% build 03-Oct-2018 11:53:22 (Reading database ... 80% build 03-Oct-2018 11:53:22 (Reading database ... 85% build 03-Oct-2018 11:53:22 (Reading database ... 90% build 03-Oct-2018 11:53:22 (Reading database ... 95% build 03-Oct-2018 11:53:22 (Reading database ... 100% build 03-Oct-2018 11:53:22 (Reading database ... 6101 files and directories currently installed.) build 03-Oct-2018 11:53:22 Preparing to unpack .../gnupg_1.4.20-1ubuntu3.3_amd64.deb ... build 03-Oct-2018 11:53:22 Unpacking gnupg (1.4.20-1ubuntu3.3) over (1.4.20-1ubuntu3.1) ... build 03-Oct-2018 11:53:23 Setting up gnupg (1.4.20-1ubuntu3.3) ... build 03-Oct-2018 11:53:24 (Reading database ... build 03-Oct-2018 11:53:24 (Reading database ... 5% build 03-Oct-2018 11:53:24 (Reading database ... 10% build 03-Oct-2018 11:53:24 (Reading database ... 15% build 03-Oct-2018 11:53:24 (Reading database ... 20% build 03-Oct-2018 11:53:24 (Reading database ... 25% build 03-Oct-2018 11:53:24 (Reading database ... 30% build 03-Oct-2018 11:53:24 (Reading database ... 35% build 03-Oct-2018 11:53:24 (Reading database ... 40% build 03-Oct-2018 11:53:24 (Reading database ... 45% build 03-Oct-2018 11:53:24 (Reading database ... 50% build 03-Oct-2018 11:53:24 (Reading database ... 55% build 03-Oct-2018 11:53:24 (Reading database ... 60% build 03-Oct-2018 11:53:24 (Reading database ... 65% build 03-Oct-2018 11:53:24 (Reading database ... 70% build 03-Oct-2018 11:53:24 (Reading database ... 75% build 03-Oct-2018 11:53:24 (Reading database ... 80% build 03-Oct-2018 11:53:24 (Reading database ... 85% build 03-Oct-2018 11:53:24 (Reading database ... 90% build 03-Oct-2018 11:53:24 (Reading database ... 95% build 03-Oct-2018 11:53:24 (Reading database ... 100% build 03-Oct-2018 11:53:24 (Reading database ... 6101 files and directories currently installed.) build 03-Oct-2018 11:53:24 Preparing to unpack .../archives/apt_1.2.27_amd64.deb ... build 03-Oct-2018 11:53:24 Unpacking apt (1.2.27) over (1.2.24) ... build 03-Oct-2018 11:53:30 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:53:30 Setting up apt (1.2.27) ... build 03-Oct-2018 11:53:30 Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... build 03-Oct-2018 11:53:31 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:53:31 (Reading database ... build 03-Oct-2018 11:53:31 (Reading database ... 5% build 03-Oct-2018 11:53:31 (Reading database ... 10% build 03-Oct-2018 11:53:31 (Reading database ... 15% build 03-Oct-2018 11:53:31 (Reading database ... 20% build 03-Oct-2018 11:53:31 (Reading database ... 25% build 03-Oct-2018 11:53:31 (Reading database ... 30% build 03-Oct-2018 11:53:31 (Reading database ... 35% build 03-Oct-2018 11:53:31 (Reading database ... 40% build 03-Oct-2018 11:53:31 (Reading database ... 45% build 03-Oct-2018 11:53:31 (Reading database ... 50% build 03-Oct-2018 11:53:31 (Reading database ... 55% build 03-Oct-2018 11:53:31 (Reading database ... 60% build 03-Oct-2018 11:53:31 (Reading database ... 65% build 03-Oct-2018 11:53:31 (Reading database ... 70% build 03-Oct-2018 11:53:31 (Reading database ... 75% build 03-Oct-2018 11:53:31 (Reading database ... 80% build 03-Oct-2018 11:53:31 (Reading database ... 85% build 03-Oct-2018 11:53:31 (Reading database ... 90% build 03-Oct-2018 11:53:31 (Reading database ... 95% build 03-Oct-2018 11:53:31 (Reading database ... 100% build 03-Oct-2018 11:53:31 (Reading database ... 6101 files and directories currently installed.) build 03-Oct-2018 11:53:31 Preparing to unpack .../libaudit-common_1%3a2.4.5-1ubuntu2.1_all.deb ... build 03-Oct-2018 11:53:32 Unpacking libaudit-common (1:2.4.5-1ubuntu2.1) over (1:2.4.5-1ubuntu2) ... build 03-Oct-2018 11:53:32 Setting up libaudit-common (1:2.4.5-1ubuntu2.1) ... build 03-Oct-2018 11:53:32 (Reading database ... build 03-Oct-2018 11:53:32 (Reading database ... 5% build 03-Oct-2018 11:53:32 (Reading database ... 10% build 03-Oct-2018 11:53:32 (Reading database ... 15% build 03-Oct-2018 11:53:32 (Reading database ... 20% build 03-Oct-2018 11:53:32 (Reading database ... 25% build 03-Oct-2018 11:53:32 (Reading database ... 30% build 03-Oct-2018 11:53:32 (Reading database ... 35% build 03-Oct-2018 11:53:32 (Reading database ... 40% build 03-Oct-2018 11:53:32 (Reading database ... 45% build 03-Oct-2018 11:53:32 (Reading database ... 50% build 03-Oct-2018 11:53:32 (Reading database ... 55% build 03-Oct-2018 11:53:32 (Reading database ... 60% build 03-Oct-2018 11:53:32 (Reading database ... 65% build 03-Oct-2018 11:53:32 (Reading database ... 70% build 03-Oct-2018 11:53:32 (Reading database ... 75% build 03-Oct-2018 11:53:32 (Reading database ... 80% build 03-Oct-2018 11:53:32 (Reading database ... 85% build 03-Oct-2018 11:53:32 (Reading database ... 90% build 03-Oct-2018 11:53:32 (Reading database ... 95% build 03-Oct-2018 11:53:32 (Reading database ... 100% build 03-Oct-2018 11:53:32 (Reading database ... 6101 files and directories currently installed.) build 03-Oct-2018 11:53:32 Preparing to unpack .../libaudit1_1%3a2.4.5-1ubuntu2.1_amd64.deb ... build 03-Oct-2018 11:53:32 Unpacking libaudit1:amd64 (1:2.4.5-1ubuntu2.1) over (1:2.4.5-1ubuntu2) ... build 03-Oct-2018 11:53:33 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:53:33 Setting up libaudit1:amd64 (1:2.4.5-1ubuntu2.1) ... build 03-Oct-2018 11:53:33 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:53:34 (Reading database ... build 03-Oct-2018 11:53:34 (Reading database ... 5% build 03-Oct-2018 11:53:34 (Reading database ... 10% build 03-Oct-2018 11:53:34 (Reading database ... 15% build 03-Oct-2018 11:53:34 (Reading database ... 20% build 03-Oct-2018 11:53:34 (Reading database ... 25% build 03-Oct-2018 11:53:34 (Reading database ... 30% build 03-Oct-2018 11:53:34 (Reading database ... 35% build 03-Oct-2018 11:53:34 (Reading database ... 40% build 03-Oct-2018 11:53:34 (Reading database ... 45% build 03-Oct-2018 11:53:34 (Reading database ... 50% build 03-Oct-2018 11:53:34 (Reading database ... 55% build 03-Oct-2018 11:53:34 (Reading database ... 60% build 03-Oct-2018 11:53:34 (Reading database ... 65% build 03-Oct-2018 11:53:34 (Reading database ... 70% build 03-Oct-2018 11:53:34 (Reading database ... 75% build 03-Oct-2018 11:53:34 (Reading database ... 80% build 03-Oct-2018 11:53:34 (Reading database ... 85% build 03-Oct-2018 11:53:34 (Reading database ... 90% build 03-Oct-2018 11:53:34 (Reading database ... 95% build 03-Oct-2018 11:53:34 (Reading database ... 100% build 03-Oct-2018 11:53:34 (Reading database ... 6101 files and directories currently installed.) build 03-Oct-2018 11:53:34 Preparing to unpack .../libpam0g_1.1.8-3.2ubuntu2.1_amd64.deb ... build 03-Oct-2018 11:53:34 Unpacking libpam0g:amd64 (1.1.8-3.2ubuntu2.1) over (1.1.8-3.2ubuntu2) ... build 03-Oct-2018 11:53:35 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:53:35 Setting up libpam0g:amd64 (1.1.8-3.2ubuntu2.1) ... build 03-Oct-2018 11:53:35 debconf: unable to initialize frontend: Dialog build 03-Oct-2018 11:53:35 debconf: (TERM is not set, so the dialog frontend is not usable.) build 03-Oct-2018 11:53:35 debconf: falling back to frontend: Readline build 03-Oct-2018 11:53:35 debconf: unable to initialize frontend: Readline build 03-Oct-2018 11:53:35 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) build 03-Oct-2018 11:53:35 debconf: falling back to frontend: Teletype build 03-Oct-2018 11:53:35 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:53:35 (Reading database ... build 03-Oct-2018 11:53:35 (Reading database ... 5% build 03-Oct-2018 11:53:35 (Reading database ... 10% build 03-Oct-2018 11:53:35 (Reading database ... 15% build 03-Oct-2018 11:53:35 (Reading database ... 20% build 03-Oct-2018 11:53:35 (Reading database ... 25% build 03-Oct-2018 11:53:35 (Reading database ... 30% build 03-Oct-2018 11:53:35 (Reading database ... 35% build 03-Oct-2018 11:53:35 (Reading database ... 40% build 03-Oct-2018 11:53:35 (Reading database ... 45% build 03-Oct-2018 11:53:35 (Reading database ... 50% build 03-Oct-2018 11:53:35 (Reading database ... 55% build 03-Oct-2018 11:53:35 (Reading database ... 60% build 03-Oct-2018 11:53:35 (Reading database ... 65% build 03-Oct-2018 11:53:35 (Reading database ... 70% build 03-Oct-2018 11:53:35 (Reading database ... 75% build 03-Oct-2018 11:53:35 (Reading database ... 80% build 03-Oct-2018 11:53:35 (Reading database ... 85% build 03-Oct-2018 11:53:35 (Reading database ... 90% build 03-Oct-2018 11:53:35 (Reading database ... 95% build 03-Oct-2018 11:53:35 (Reading database ... 100% build 03-Oct-2018 11:53:35 (Reading database ... 6101 files and directories currently installed.) build 03-Oct-2018 11:53:35 Preparing to unpack .../libpam-modules-bin_1.1.8-3.2ubuntu2.1_amd64.deb ... build 03-Oct-2018 11:53:36 Unpacking libpam-modules-bin (1.1.8-3.2ubuntu2.1) over (1.1.8-3.2ubuntu2) ... build 03-Oct-2018 11:53:36 Setting up libpam-modules-bin (1.1.8-3.2ubuntu2.1) ... build 03-Oct-2018 11:53:36 (Reading database ... build 03-Oct-2018 11:53:36 (Reading database ... 5% build 03-Oct-2018 11:53:36 (Reading database ... 10% build 03-Oct-2018 11:53:36 (Reading database ... 15% build 03-Oct-2018 11:53:36 (Reading database ... 20% build 03-Oct-2018 11:53:36 (Reading database ... 25% build 03-Oct-2018 11:53:36 (Reading database ... 30% build 03-Oct-2018 11:53:36 (Reading database ... 35% build 03-Oct-2018 11:53:36 (Reading database ... 40% build 03-Oct-2018 11:53:36 (Reading database ... 45% build 03-Oct-2018 11:53:36 (Reading database ... 50% build 03-Oct-2018 11:53:36 (Reading database ... 55% build 03-Oct-2018 11:53:36 (Reading database ... 60% build 03-Oct-2018 11:53:36 (Reading database ... 65% build 03-Oct-2018 11:53:36 (Reading database ... 70% build 03-Oct-2018 11:53:36 (Reading database ... 75% build 03-Oct-2018 11:53:36 (Reading database ... 80% build 03-Oct-2018 11:53:36 (Reading database ... 85% build 03-Oct-2018 11:53:36 (Reading database ... 90% build 03-Oct-2018 11:53:36 (Reading database ... 95% build 03-Oct-2018 11:53:36 (Reading database ... 100% build 03-Oct-2018 11:53:36 (Reading database ... 6101 files and directories currently installed.) build 03-Oct-2018 11:53:36 Preparing to unpack .../libpam-modules_1.1.8-3.2ubuntu2.1_amd64.deb ... build 03-Oct-2018 11:53:37 debconf: unable to initialize frontend: Dialog build 03-Oct-2018 11:53:37 debconf: (TERM is not set, so the dialog frontend is not usable.) build 03-Oct-2018 11:53:37 debconf: falling back to frontend: Readline build 03-Oct-2018 11:53:37 debconf: unable to initialize frontend: Readline build 03-Oct-2018 11:53:37 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) build 03-Oct-2018 11:53:37 debconf: falling back to frontend: Teletype build 03-Oct-2018 11:53:37 Unpacking libpam-modules:amd64 (1.1.8-3.2ubuntu2.1) over (1.1.8-3.2ubuntu2) ... build 03-Oct-2018 11:53:40 Setting up libpam-modules:amd64 (1.1.8-3.2ubuntu2.1) ... build 03-Oct-2018 11:53:41 (Reading database ... build 03-Oct-2018 11:53:41 (Reading database ... 5% build 03-Oct-2018 11:53:41 (Reading database ... 10% build 03-Oct-2018 11:53:41 (Reading database ... 15% build 03-Oct-2018 11:53:41 (Reading database ... 20% build 03-Oct-2018 11:53:41 (Reading database ... 25% build 03-Oct-2018 11:53:41 (Reading database ... 30% build 03-Oct-2018 11:53:41 (Reading database ... 35% build 03-Oct-2018 11:53:41 (Reading database ... 40% build 03-Oct-2018 11:53:41 (Reading database ... 45% build 03-Oct-2018 11:53:41 (Reading database ... 50% build 03-Oct-2018 11:53:41 (Reading database ... 55% build 03-Oct-2018 11:53:41 (Reading database ... 60% build 03-Oct-2018 11:53:41 (Reading database ... 65% build 03-Oct-2018 11:53:41 (Reading database ... 70% build 03-Oct-2018 11:53:41 (Reading database ... 75% build 03-Oct-2018 11:53:41 (Reading database ... 80% build 03-Oct-2018 11:53:41 (Reading database ... 85% build 03-Oct-2018 11:53:41 (Reading database ... 90% build 03-Oct-2018 11:53:41 (Reading database ... 95% build 03-Oct-2018 11:53:41 (Reading database ... 100% build 03-Oct-2018 11:53:41 (Reading database ... 6101 files and directories currently installed.) build 03-Oct-2018 11:53:41 Preparing to unpack .../libapparmor1_2.10.95-0ubuntu2.9_amd64.deb ... build 03-Oct-2018 11:53:41 Unpacking libapparmor1:amd64 (2.10.95-0ubuntu2.9) over (2.10.95-0ubuntu2.7) ... build 03-Oct-2018 11:53:41 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:53:41 Setting up libapparmor1:amd64 (2.10.95-0ubuntu2.9) ... build 03-Oct-2018 11:53:41 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:53:42 (Reading database ... build 03-Oct-2018 11:53:42 (Reading database ... 5% build 03-Oct-2018 11:53:42 (Reading database ... 10% build 03-Oct-2018 11:53:42 (Reading database ... 15% build 03-Oct-2018 11:53:42 (Reading database ... 20% build 03-Oct-2018 11:53:42 (Reading database ... 25% build 03-Oct-2018 11:53:42 (Reading database ... 30% build 03-Oct-2018 11:53:42 (Reading database ... 35% build 03-Oct-2018 11:53:42 (Reading database ... 40% build 03-Oct-2018 11:53:42 (Reading database ... 45% build 03-Oct-2018 11:53:42 (Reading database ... 50% build 03-Oct-2018 11:53:42 (Reading database ... 55% build 03-Oct-2018 11:53:42 (Reading database ... 60% build 03-Oct-2018 11:53:42 (Reading database ... 65% build 03-Oct-2018 11:53:42 (Reading database ... 70% build 03-Oct-2018 11:53:42 (Reading database ... 75% build 03-Oct-2018 11:53:42 (Reading database ... 80% build 03-Oct-2018 11:53:42 (Reading database ... 85% build 03-Oct-2018 11:53:42 (Reading database ... 90% build 03-Oct-2018 11:53:42 (Reading database ... 95% build 03-Oct-2018 11:53:42 (Reading database ... 100% build 03-Oct-2018 11:53:42 (Reading database ... 6101 files and directories currently installed.) build 03-Oct-2018 11:53:42 Preparing to unpack .../libuuid1_2.27.1-6ubuntu3.6_amd64.deb ... build 03-Oct-2018 11:53:42 Unpacking libuuid1:amd64 (2.27.1-6ubuntu3.6) over (2.27.1-6ubuntu3.3) ... build 03-Oct-2018 11:53:42 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:53:42 Setting up libuuid1:amd64 (2.27.1-6ubuntu3.6) ... build 03-Oct-2018 11:53:42 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:53:43 (Reading database ... build 03-Oct-2018 11:53:43 (Reading database ... 5% build 03-Oct-2018 11:53:43 (Reading database ... 10% build 03-Oct-2018 11:53:43 (Reading database ... 15% build 03-Oct-2018 11:53:43 (Reading database ... 20% build 03-Oct-2018 11:53:43 (Reading database ... 25% build 03-Oct-2018 11:53:43 (Reading database ... 30% build 03-Oct-2018 11:53:43 (Reading database ... 35% build 03-Oct-2018 11:53:43 (Reading database ... 40% build 03-Oct-2018 11:53:43 (Reading database ... 45% build 03-Oct-2018 11:53:43 (Reading database ... 50% build 03-Oct-2018 11:53:43 (Reading database ... 55% build 03-Oct-2018 11:53:43 (Reading database ... 60% build 03-Oct-2018 11:53:43 (Reading database ... 65% build 03-Oct-2018 11:53:43 (Reading database ... 70% build 03-Oct-2018 11:53:43 (Reading database ... 75% build 03-Oct-2018 11:53:43 (Reading database ... 80% build 03-Oct-2018 11:53:43 (Reading database ... 85% build 03-Oct-2018 11:53:43 (Reading database ... 90% build 03-Oct-2018 11:53:43 (Reading database ... 95% build 03-Oct-2018 11:53:43 (Reading database ... 100% build 03-Oct-2018 11:53:43 (Reading database ... 6101 files and directories currently installed.) build 03-Oct-2018 11:53:43 Preparing to unpack .../libblkid1_2.27.1-6ubuntu3.6_amd64.deb ... build 03-Oct-2018 11:53:44 Unpacking libblkid1:amd64 (2.27.1-6ubuntu3.6) over (2.27.1-6ubuntu3.3) ... build 03-Oct-2018 11:53:44 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:53:44 Setting up libblkid1:amd64 (2.27.1-6ubuntu3.6) ... build 03-Oct-2018 11:53:44 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:53:45 (Reading database ... build 03-Oct-2018 11:53:45 (Reading database ... 5% build 03-Oct-2018 11:53:45 (Reading database ... 10% build 03-Oct-2018 11:53:45 (Reading database ... 15% build 03-Oct-2018 11:53:45 (Reading database ... 20% build 03-Oct-2018 11:53:45 (Reading database ... 25% build 03-Oct-2018 11:53:45 (Reading database ... 30% build 03-Oct-2018 11:53:45 (Reading database ... 35% build 03-Oct-2018 11:53:45 (Reading database ... 40% build 03-Oct-2018 11:53:45 (Reading database ... 45% build 03-Oct-2018 11:53:45 (Reading database ... 50% build 03-Oct-2018 11:53:45 (Reading database ... 55% build 03-Oct-2018 11:53:45 (Reading database ... 60% build 03-Oct-2018 11:53:45 (Reading database ... 65% build 03-Oct-2018 11:53:45 (Reading database ... 70% build 03-Oct-2018 11:53:45 (Reading database ... 75% build 03-Oct-2018 11:53:45 (Reading database ... 80% build 03-Oct-2018 11:53:45 (Reading database ... 85% build 03-Oct-2018 11:53:45 (Reading database ... 90% build 03-Oct-2018 11:53:45 (Reading database ... 95% build 03-Oct-2018 11:53:45 (Reading database ... 100% build 03-Oct-2018 11:53:45 (Reading database ... 6101 files and directories currently installed.) build 03-Oct-2018 11:53:45 Preparing to unpack .../libmount1_2.27.1-6ubuntu3.6_amd64.deb ... build 03-Oct-2018 11:53:45 Unpacking libmount1:amd64 (2.27.1-6ubuntu3.6) over (2.27.1-6ubuntu3.3) ... build 03-Oct-2018 11:53:45 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:53:45 Setting up libmount1:amd64 (2.27.1-6ubuntu3.6) ... build 03-Oct-2018 11:53:45 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:53:46 (Reading database ... build 03-Oct-2018 11:53:46 (Reading database ... 5% build 03-Oct-2018 11:53:46 (Reading database ... 10% build 03-Oct-2018 11:53:46 (Reading database ... 15% build 03-Oct-2018 11:53:46 (Reading database ... 20% build 03-Oct-2018 11:53:46 (Reading database ... 25% build 03-Oct-2018 11:53:46 (Reading database ... 30% build 03-Oct-2018 11:53:46 (Reading database ... 35% build 03-Oct-2018 11:53:46 (Reading database ... 40% build 03-Oct-2018 11:53:46 (Reading database ... 45% build 03-Oct-2018 11:53:46 (Reading database ... 50% build 03-Oct-2018 11:53:46 (Reading database ... 55% build 03-Oct-2018 11:53:46 (Reading database ... 60% build 03-Oct-2018 11:53:46 (Reading database ... 65% build 03-Oct-2018 11:53:46 (Reading database ... 70% build 03-Oct-2018 11:53:46 (Reading database ... 75% build 03-Oct-2018 11:53:46 (Reading database ... 80% build 03-Oct-2018 11:53:46 (Reading database ... 85% build 03-Oct-2018 11:53:46 (Reading database ... 90% build 03-Oct-2018 11:53:46 (Reading database ... 95% build 03-Oct-2018 11:53:46 (Reading database ... 100% build 03-Oct-2018 11:53:46 (Reading database ... 6101 files and directories currently installed.) build 03-Oct-2018 11:53:46 Preparing to unpack .../libseccomp2_2.3.1-2.1ubuntu2~16.04.1_amd64.deb ... build 03-Oct-2018 11:53:46 Unpacking libseccomp2:amd64 (2.3.1-2.1ubuntu2~16.04.1) over (2.2.3-3ubuntu3) ... build 03-Oct-2018 11:53:46 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:53:47 Setting up libseccomp2:amd64 (2.3.1-2.1ubuntu2~16.04.1) ... build 03-Oct-2018 11:53:47 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:53:47 (Reading database ... build 03-Oct-2018 11:53:47 (Reading database ... 5% build 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100% build 03-Oct-2018 11:53:47 (Reading database ... 6101 files and directories currently installed.) build 03-Oct-2018 11:53:47 Preparing to unpack .../libsystemd0_229-4ubuntu21.4_amd64.deb ... build 03-Oct-2018 11:53:47 Unpacking libsystemd0:amd64 (229-4ubuntu21.4) over (229-4ubuntu19) ... build 03-Oct-2018 11:53:48 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:53:48 Setting up libsystemd0:amd64 (229-4ubuntu21.4) ... build 03-Oct-2018 11:53:48 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:53:49 (Reading database ... build 03-Oct-2018 11:53:49 (Reading database ... 5% build 03-Oct-2018 11:53:49 (Reading database ... 10% build 03-Oct-2018 11:53:49 (Reading database ... 15% build 03-Oct-2018 11:53:49 (Reading database ... 20% build 03-Oct-2018 11:53:49 (Reading database ... 25% build 03-Oct-2018 11:53:49 (Reading database ... 30% build 03-Oct-2018 11:53:49 (Reading database ... 35% build 03-Oct-2018 11:53:49 (Reading database ... 40% build 03-Oct-2018 11:53:49 (Reading database ... 45% build 03-Oct-2018 11:53:49 (Reading database ... 50% build 03-Oct-2018 11:53:49 (Reading database ... 55% build 03-Oct-2018 11:53:49 (Reading database ... 60% build 03-Oct-2018 11:53:49 (Reading database ... 65% build 03-Oct-2018 11:53:49 (Reading database ... 70% build 03-Oct-2018 11:53:49 (Reading database ... 75% build 03-Oct-2018 11:53:49 (Reading database ... 80% build 03-Oct-2018 11:53:49 (Reading database ... 85% build 03-Oct-2018 11:53:49 (Reading database ... 90% build 03-Oct-2018 11:53:49 (Reading database ... 95% build 03-Oct-2018 11:53:49 (Reading database ... 100% build 03-Oct-2018 11:53:49 (Reading database ... 6101 files and directories currently installed.) build 03-Oct-2018 11:53:49 Preparing to unpack .../systemd_229-4ubuntu21.4_amd64.deb ... build 03-Oct-2018 11:53:49 Unpacking systemd (229-4ubuntu21.4) over (229-4ubuntu19) ... build 03-Oct-2018 11:54:02 Setting up systemd (229-4ubuntu21.4) ... build 03-Oct-2018 11:54:03 Initializing machine ID from random generator. build 03-Oct-2018 11:54:03 addgroup: The group `systemd-journal' already exists as a system group. Exiting. build 03-Oct-2018 11:54:03 Operation failed: No such file or directory build 03-Oct-2018 11:54:03 (Reading database ... build 03-Oct-2018 11:54:03 (Reading database ... 5% build 03-Oct-2018 11:54:03 (Reading database ... 10% build 03-Oct-2018 11:54:03 (Reading database ... 15% build 03-Oct-2018 11:54:03 (Reading database ... 20% build 03-Oct-2018 11:54:03 (Reading database ... 25% build 03-Oct-2018 11:54:03 (Reading database ... 30% build 03-Oct-2018 11:54:03 (Reading database ... 35% build 03-Oct-2018 11:54:03 (Reading database ... 40% build 03-Oct-2018 11:54:03 (Reading database ... 45% build 03-Oct-2018 11:54:03 (Reading database ... 50% build 03-Oct-2018 11:54:03 (Reading database ... 55% build 03-Oct-2018 11:54:03 (Reading database ... 60% build 03-Oct-2018 11:54:03 (Reading database ... 65% build 03-Oct-2018 11:54:03 (Reading database ... 70% build 03-Oct-2018 11:54:03 (Reading database ... 75% build 03-Oct-2018 11:54:03 (Reading database ... 80% build 03-Oct-2018 11:54:03 (Reading database ... 85% build 03-Oct-2018 11:54:03 (Reading database ... 90% build 03-Oct-2018 11:54:03 (Reading database ... 95% build 03-Oct-2018 11:54:03 (Reading database ... 100% build 03-Oct-2018 11:54:03 (Reading database ... 6101 files and directories currently installed.) build 03-Oct-2018 11:54:03 Preparing to unpack .../systemd-sysv_229-4ubuntu21.4_amd64.deb ... build 03-Oct-2018 11:54:03 Unpacking systemd-sysv (229-4ubuntu21.4) over (229-4ubuntu19) ... build 03-Oct-2018 11:54:04 Setting up systemd-sysv (229-4ubuntu21.4) ... build 03-Oct-2018 11:54:04 (Reading database ... build 03-Oct-2018 11:54:04 (Reading database ... 5% build 03-Oct-2018 11:54:04 (Reading database ... 10% build 03-Oct-2018 11:54:04 (Reading database ... 15% build 03-Oct-2018 11:54:04 (Reading database ... 20% build 03-Oct-2018 11:54:04 (Reading database ... 25% build 03-Oct-2018 11:54:04 (Reading database ... 30% build 03-Oct-2018 11:54:04 (Reading database ... 35% build 03-Oct-2018 11:54:04 (Reading database ... 40% build 03-Oct-2018 11:54:04 (Reading database ... 45% build 03-Oct-2018 11:54:04 (Reading database ... 50% build 03-Oct-2018 11:54:04 (Reading database ... 55% build 03-Oct-2018 11:54:04 (Reading database ... 60% build 03-Oct-2018 11:54:04 (Reading database ... 65% build 03-Oct-2018 11:54:04 (Reading database ... 70% build 03-Oct-2018 11:54:04 (Reading database ... 75% build 03-Oct-2018 11:54:04 (Reading database ... 80% build 03-Oct-2018 11:54:04 (Reading database ... 85% build 03-Oct-2018 11:54:04 (Reading database ... 90% build 03-Oct-2018 11:54:04 (Reading database ... 95% build 03-Oct-2018 11:54:04 (Reading database ... 100% build 03-Oct-2018 11:54:04 (Reading database ... 6101 files and directories currently installed.) build 03-Oct-2018 11:54:04 Preparing to unpack .../python2.7_2.7.12-1ubuntu0~16.04.3_amd64.deb ... build 03-Oct-2018 11:54:04 Unpacking python2.7 (2.7.12-1ubuntu0~16.04.3) over (2.7.12-1ubuntu0~16.04.1) ... build 03-Oct-2018 11:54:06 Preparing to unpack .../libdb5.3_5.3.28-11ubuntu0.1_amd64.deb ... build 03-Oct-2018 11:54:06 Unpacking libdb5.3:amd64 (5.3.28-11ubuntu0.1) over (5.3.28-11) ... build 03-Oct-2018 11:54:06 Processing triggers for mime-support (3.59ubuntu1) ... build 03-Oct-2018 11:54:06 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:54:06 Setting up libdb5.3:amd64 (5.3.28-11ubuntu0.1) ... build 03-Oct-2018 11:54:07 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:54:07 (Reading database ... build 03-Oct-2018 11:54:07 (Reading database ... 5% build 03-Oct-2018 11:54:07 (Reading database ... 10% build 03-Oct-2018 11:54:07 (Reading database ... 15% build 03-Oct-2018 11:54:07 (Reading database ... 20% build 03-Oct-2018 11:54:07 (Reading database ... 25% build 03-Oct-2018 11:54:07 (Reading database ... 30% build 03-Oct-2018 11:54:07 (Reading database ... 35% build 03-Oct-2018 11:54:07 (Reading database ... 40% build 03-Oct-2018 11:54:07 (Reading database 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build 03-Oct-2018 11:54:09 Unpacking libpython2.7-stdlib:amd64 (2.7.12-1ubuntu0~16.04.3) over (2.7.12-1ubuntu0~16.04.1) ... build 03-Oct-2018 11:54:22 Preparing to unpack .../python2.7-minimal_2.7.12-1ubuntu0~16.04.3_amd64.deb ... build 03-Oct-2018 11:54:22 Unpacking python2.7-minimal (2.7.12-1ubuntu0~16.04.3) over (2.7.12-1ubuntu0~16.04.1) ... build 03-Oct-2018 11:54:23 Preparing to unpack .../libpython2.7-minimal_2.7.12-1ubuntu0~16.04.3_amd64.deb ... build 03-Oct-2018 11:54:23 Unpacking libpython2.7-minimal:amd64 (2.7.12-1ubuntu0~16.04.3) over (2.7.12-1ubuntu0~16.04.1) ... build 03-Oct-2018 11:54:29 Preparing to unpack .../python-minimal_2.7.12-1~16.04_amd64.deb ... build 03-Oct-2018 11:54:29 Unpacking python-minimal (2.7.12-1~16.04) over (2.7.11-1) ... build 03-Oct-2018 11:54:30 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:54:30 Setting up libpython2.7-minimal:amd64 (2.7.12-1ubuntu0~16.04.3) ... build 03-Oct-2018 11:54:31 Setting up python2.7-minimal (2.7.12-1ubuntu0~16.04.3) ... build 03-Oct-2018 11:54:31 Setting up python-minimal (2.7.12-1~16.04) ... build 03-Oct-2018 11:54:32 (Reading database ... build 03-Oct-2018 11:54:32 (Reading database ... 5% build 03-Oct-2018 11:54:32 (Reading database ... 10% build 03-Oct-2018 11:54:32 (Reading database ... 15% build 03-Oct-2018 11:54:32 (Reading database ... 20% build 03-Oct-2018 11:54:32 (Reading database ... 25% build 03-Oct-2018 11:54:32 (Reading database ... 30% build 03-Oct-2018 11:54:32 (Reading database ... 35% build 03-Oct-2018 11:54:32 (Reading database ... 40% build 03-Oct-2018 11:54:32 (Reading database ... 45% build 03-Oct-2018 11:54:32 (Reading database ... 50% build 03-Oct-2018 11:54:32 (Reading database ... 55% build 03-Oct-2018 11:54:32 (Reading database ... 60% build 03-Oct-2018 11:54:32 (Reading database ... 65% build 03-Oct-2018 11:54:32 (Reading database ... 70% build 03-Oct-2018 11:54:32 (Reading database ... 75% build 03-Oct-2018 11:54:32 (Reading database ... 80% build 03-Oct-2018 11:54:32 (Reading database ... 85% build 03-Oct-2018 11:54:32 (Reading database ... 90% build 03-Oct-2018 11:54:32 (Reading database ... 95% build 03-Oct-2018 11:54:32 (Reading database ... 100% build 03-Oct-2018 11:54:32 (Reading database ... 6101 files and directories currently installed.) build 03-Oct-2018 11:54:32 Preparing to unpack .../python_2.7.12-1~16.04_amd64.deb ... build 03-Oct-2018 11:54:32 Unpacking python (2.7.12-1~16.04) over (2.7.11-1) ... build 03-Oct-2018 11:54:33 Preparing to unpack .../libpython-stdlib_2.7.12-1~16.04_amd64.deb ... build 03-Oct-2018 11:54:33 Unpacking libpython-stdlib:amd64 (2.7.12-1~16.04) over (2.7.11-1) ... build 03-Oct-2018 11:54:34 Preparing to unpack .../libfdisk1_2.27.1-6ubuntu3.6_amd64.deb ... build 03-Oct-2018 11:54:34 Unpacking libfdisk1:amd64 (2.27.1-6ubuntu3.6) over (2.27.1-6ubuntu3.3) ... build 03-Oct-2018 11:54:35 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:54:35 Setting up libfdisk1:amd64 (2.27.1-6ubuntu3.6) ... build 03-Oct-2018 11:54:35 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:54:35 (Reading database ... build 03-Oct-2018 11:54:35 (Reading database ... 5% build 03-Oct-2018 11:54:35 (Reading database ... 10% build 03-Oct-2018 11:54:35 (Reading database ... 15% build 03-Oct-2018 11:54:35 (Reading database ... 20% build 03-Oct-2018 11:54:35 (Reading database ... 25% build 03-Oct-2018 11:54:35 (Reading database ... 30% build 03-Oct-2018 11:54:35 (Reading database ... 35% build 03-Oct-2018 11:54:35 (Reading database ... 40% build 03-Oct-2018 11:54:35 (Reading database ... 45% build 03-Oct-2018 11:54:35 (Reading database ... 50% build 03-Oct-2018 11:54:35 (Reading database ... 55% build 03-Oct-2018 11:54:35 (Reading database ... 60% build 03-Oct-2018 11:54:35 (Reading database ... 65% build 03-Oct-2018 11:54:35 (Reading database ... 70% build 03-Oct-2018 11:54:35 (Reading database ... 75% build 03-Oct-2018 11:54:35 (Reading database ... 80% build 03-Oct-2018 11:54:35 (Reading database ... 85% build 03-Oct-2018 11:54:35 (Reading database ... 90% build 03-Oct-2018 11:54:35 (Reading database ... 95% build 03-Oct-2018 11:54:35 (Reading database ... 100% build 03-Oct-2018 11:54:35 (Reading database ... 6101 files and directories currently installed.) build 03-Oct-2018 11:54:35 Preparing to unpack .../libgcrypt20_1.6.5-2ubuntu0.5_amd64.deb ... build 03-Oct-2018 11:54:35 Unpacking libgcrypt20:amd64 (1.6.5-2ubuntu0.5) over (1.6.5-2ubuntu0.3) ... build 03-Oct-2018 11:54:36 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:54:36 Setting up libgcrypt20:amd64 (1.6.5-2ubuntu0.5) ... build 03-Oct-2018 11:54:36 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:54:36 (Reading database ... build 03-Oct-2018 11:54:36 (Reading database ... 5% build 03-Oct-2018 11:54:36 (Reading database ... 10% build 03-Oct-2018 11:54:36 (Reading database ... 15% build 03-Oct-2018 11:54:36 (Reading database ... 20% build 03-Oct-2018 11:54:36 (Reading database ... 25% build 03-Oct-2018 11:54:36 (Reading database ... 30% build 03-Oct-2018 11:54:36 (Reading database ... 35% build 03-Oct-2018 11:54:36 (Reading database ... 40% build 03-Oct-2018 11:54:36 (Reading database ... 45% build 03-Oct-2018 11:54:36 (Reading database ... 50% build 03-Oct-2018 11:54:36 (Reading database ... 55% build 03-Oct-2018 11:54:36 (Reading database ... 60% build 03-Oct-2018 11:54:36 (Reading database ... 65% build 03-Oct-2018 11:54:36 (Reading database ... 70% build 03-Oct-2018 11:54:36 (Reading database ... 75% build 03-Oct-2018 11:54:36 (Reading database ... 80% build 03-Oct-2018 11:54:36 (Reading database ... 85% build 03-Oct-2018 11:54:36 (Reading database ... 90% build 03-Oct-2018 11:54:36 (Reading database ... 95% build 03-Oct-2018 11:54:36 (Reading database ... 100% build 03-Oct-2018 11:54:36 (Reading database ... 6101 files and directories currently installed.) build 03-Oct-2018 11:54:36 Preparing to unpack .../libpam-runtime_1.1.8-3.2ubuntu2.1_all.deb ... build 03-Oct-2018 11:54:37 Unpacking libpam-runtime (1.1.8-3.2ubuntu2.1) over (1.1.8-3.2ubuntu2) ... build 03-Oct-2018 11:54:37 Setting up libpam-runtime (1.1.8-3.2ubuntu2.1) ... build 03-Oct-2018 11:54:37 debconf: unable to initialize frontend: Dialog build 03-Oct-2018 11:54:37 debconf: (TERM is not set, so the dialog frontend is not usable.) build 03-Oct-2018 11:54:37 debconf: falling back to frontend: Readline build 03-Oct-2018 11:54:37 debconf: unable to initialize frontend: Readline build 03-Oct-2018 11:54:37 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) build 03-Oct-2018 11:54:37 debconf: falling back to frontend: Teletype build 03-Oct-2018 11:54:38 (Reading database ... build 03-Oct-2018 11:54:38 (Reading database ... 5% build 03-Oct-2018 11:54:38 (Reading database ... 10% build 03-Oct-2018 11:54:38 (Reading database ... 15% build 03-Oct-2018 11:54:38 (Reading database ... 20% build 03-Oct-2018 11:54:38 (Reading database ... 25% build 03-Oct-2018 11:54:38 (Reading database ... 30% build 03-Oct-2018 11:54:38 (Reading database ... 35% build 03-Oct-2018 11:54:38 (Reading database ... 40% build 03-Oct-2018 11:54:38 (Reading database ... 45% build 03-Oct-2018 11:54:38 (Reading database ... 50% build 03-Oct-2018 11:54:38 (Reading database ... 55% build 03-Oct-2018 11:54:38 (Reading database ... 60% build 03-Oct-2018 11:54:38 (Reading database ... 65% build 03-Oct-2018 11:54:38 (Reading database ... 70% build 03-Oct-2018 11:54:38 (Reading database ... 75% build 03-Oct-2018 11:54:38 (Reading database ... 80% build 03-Oct-2018 11:54:38 (Reading database ... 85% build 03-Oct-2018 11:54:38 (Reading database ... 90% build 03-Oct-2018 11:54:38 (Reading database ... 95% build 03-Oct-2018 11:54:38 (Reading database ... 100% build 03-Oct-2018 11:54:38 (Reading database ... 6101 files and directories currently installed.) build 03-Oct-2018 11:54:38 Preparing to unpack .../libsmartcols1_2.27.1-6ubuntu3.6_amd64.deb ... build 03-Oct-2018 11:54:38 Unpacking libsmartcols1:amd64 (2.27.1-6ubuntu3.6) over (2.27.1-6ubuntu3.3) ... build 03-Oct-2018 11:54:39 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:54:39 Setting up libsmartcols1:amd64 (2.27.1-6ubuntu3.6) ... build 03-Oct-2018 11:54:39 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:54:39 (Reading database ... build 03-Oct-2018 11:54:39 (Reading database ... 5% build 03-Oct-2018 11:54:39 (Reading database ... 10% build 03-Oct-2018 11:54:39 (Reading database ... 15% build 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03-Oct-2018 11:54:39 Preparing to unpack .../libudev1_229-4ubuntu21.4_amd64.deb ... build 03-Oct-2018 11:54:40 Unpacking libudev1:amd64 (229-4ubuntu21.4) over (229-4ubuntu19) ... build 03-Oct-2018 11:54:40 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:54:40 Setting up libudev1:amd64 (229-4ubuntu21.4) ... build 03-Oct-2018 11:54:40 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:54:41 (Reading database ... build 03-Oct-2018 11:54:41 (Reading database ... 5% build 03-Oct-2018 11:54:41 (Reading database ... 10% build 03-Oct-2018 11:54:41 (Reading database ... 15% build 03-Oct-2018 11:54:41 (Reading database ... 20% build 03-Oct-2018 11:54:41 (Reading database ... 25% build 03-Oct-2018 11:54:41 (Reading database ... 30% build 03-Oct-2018 11:54:41 (Reading database ... 35% build 03-Oct-2018 11:54:41 (Reading database ... 40% build 03-Oct-2018 11:54:41 (Reading database ... 45% build 03-Oct-2018 11:54:41 (Reading database ... 50% build 03-Oct-2018 11:54:41 (Reading database ... 55% build 03-Oct-2018 11:54:41 (Reading database ... 60% build 03-Oct-2018 11:54:41 (Reading database ... 65% build 03-Oct-2018 11:54:41 (Reading database ... 70% build 03-Oct-2018 11:54:41 (Reading database ... 75% build 03-Oct-2018 11:54:41 (Reading database ... 80% build 03-Oct-2018 11:54:41 (Reading database ... 85% build 03-Oct-2018 11:54:41 (Reading database ... 90% build 03-Oct-2018 11:54:41 (Reading database ... 95% build 03-Oct-2018 11:54:41 (Reading database ... 100% build 03-Oct-2018 11:54:41 (Reading database ... 6101 files and directories currently installed.) build 03-Oct-2018 11:54:41 Preparing to unpack .../multiarch-support_2.23-0ubuntu10_amd64.deb ... build 03-Oct-2018 11:54:41 Unpacking multiarch-support (2.23-0ubuntu10) over (2.23-0ubuntu9) ... build 03-Oct-2018 11:54:41 Setting up multiarch-support (2.23-0ubuntu10) ... build 03-Oct-2018 11:54:41 (Reading database ... build 03-Oct-2018 11:54:41 (Reading database ... 5% build 03-Oct-2018 11:54:41 (Reading database ... 10% build 03-Oct-2018 11:54:41 (Reading database ... 15% build 03-Oct-2018 11:54:41 (Reading database ... 20% build 03-Oct-2018 11:54:41 (Reading database ... 25% build 03-Oct-2018 11:54:41 (Reading database ... 30% build 03-Oct-2018 11:54:41 (Reading database ... 35% build 03-Oct-2018 11:54:41 (Reading database ... 40% build 03-Oct-2018 11:54:41 (Reading database ... 45% build 03-Oct-2018 11:54:41 (Reading database ... 50% build 03-Oct-2018 11:54:41 (Reading database ... 55% build 03-Oct-2018 11:54:41 (Reading database ... 60% build 03-Oct-2018 11:54:41 (Reading database ... 65% build 03-Oct-2018 11:54:41 (Reading database ... 70% build 03-Oct-2018 11:54:41 (Reading database ... 75% build 03-Oct-2018 11:54:41 (Reading database ... 80% build 03-Oct-2018 11:54:41 (Reading database ... 85% build 03-Oct-2018 11:54:41 (Reading database ... 90% build 03-Oct-2018 11:54:41 (Reading database ... 95% build 03-Oct-2018 11:54:41 (Reading database ... 100% build 03-Oct-2018 11:54:41 (Reading database ... 6101 files and directories currently installed.) build 03-Oct-2018 11:54:41 Preparing to unpack .../sensible-utils_0.0.9ubuntu0.16.04.1_all.deb ... build 03-Oct-2018 11:54:41 Unpacking sensible-utils (0.0.9ubuntu0.16.04.1) over (0.0.9) ... build 03-Oct-2018 11:54:42 Processing triggers for mime-support (3.59ubuntu1) ... build 03-Oct-2018 11:54:42 Setting up sensible-utils (0.0.9ubuntu0.16.04.1) ... build 03-Oct-2018 11:54:42 (Reading database ... build 03-Oct-2018 11:54:42 (Reading database ... 5% build 03-Oct-2018 11:54:42 (Reading database ... 10% build 03-Oct-2018 11:54:42 (Reading database ... 15% build 03-Oct-2018 11:54:42 (Reading database ... 20% build 03-Oct-2018 11:54:42 (Reading database ... 25% build 03-Oct-2018 11:54:42 (Reading database ... 30% build 03-Oct-2018 11:54:42 (Reading database ... 35% build 03-Oct-2018 11:54:42 (Reading database ... 40% build 03-Oct-2018 11:54:42 (Reading database ... 45% build 03-Oct-2018 11:54:42 (Reading database ... 50% build 03-Oct-2018 11:54:42 (Reading database ... 55% build 03-Oct-2018 11:54:42 (Reading database ... 60% build 03-Oct-2018 11:54:42 (Reading database ... 65% build 03-Oct-2018 11:54:42 (Reading database ... 70% build 03-Oct-2018 11:54:42 (Reading database ... 75% build 03-Oct-2018 11:54:42 (Reading database ... 80% build 03-Oct-2018 11:54:42 (Reading database ... 85% build 03-Oct-2018 11:54:42 (Reading database ... 90% build 03-Oct-2018 11:54:42 (Reading database ... 95% build 03-Oct-2018 11:54:42 (Reading database ... 100% build 03-Oct-2018 11:54:42 (Reading database ... 6101 files and directories currently installed.) build 03-Oct-2018 11:54:42 Preparing to unpack .../libprocps4_2%3a3.3.10-4ubuntu2.4_amd64.deb ... build 03-Oct-2018 11:54:43 Unpacking libprocps4:amd64 (2:3.3.10-4ubuntu2.4) over (2:3.3.10-4ubuntu2.3) ... build 03-Oct-2018 11:54:43 Preparing to unpack .../procps_2%3a3.3.10-4ubuntu2.4_amd64.deb ... build 03-Oct-2018 11:54:43 Unpacking procps (2:3.3.10-4ubuntu2.4) over (2:3.3.10-4ubuntu2.3) ... build 03-Oct-2018 11:54:45 Preparing to unpack .../openssl_1.0.2g-1ubuntu4.13_amd64.deb ... build 03-Oct-2018 11:54:45 Unpacking openssl (1.0.2g-1ubuntu4.13) over (1.0.2g-1ubuntu4.8) ... build 03-Oct-2018 11:54:47 Preparing to unpack .../ca-certificates_20170717~16.04.1_all.deb ... build 03-Oct-2018 11:54:47 Unpacking ca-certificates (20170717~16.04.1) over (20160104ubuntu1) ... build 03-Oct-2018 11:54:52 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:54:52 Processing triggers for systemd (229-4ubuntu21.4) ... build 03-Oct-2018 11:54:52 Setting up libssl1.0.0:amd64 (1.0.2g-1ubuntu4.13) ... build 03-Oct-2018 11:54:52 debconf: unable to initialize frontend: Dialog build 03-Oct-2018 11:54:52 debconf: (TERM is not set, so the dialog frontend is not usable.) build 03-Oct-2018 11:54:52 debconf: falling back to frontend: Readline build 03-Oct-2018 11:54:52 debconf: unable to initialize frontend: Readline build 03-Oct-2018 11:54:52 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) build 03-Oct-2018 11:54:52 debconf: falling back to frontend: Teletype build 03-Oct-2018 11:54:52 Setting up libpython2.7-stdlib:amd64 (2.7.12-1ubuntu0~16.04.3) ... build 03-Oct-2018 11:54:52 Setting up python2.7 (2.7.12-1ubuntu0~16.04.3) ... build 03-Oct-2018 11:54:53 Setting up libpython-stdlib:amd64 (2.7.12-1~16.04) ... build 03-Oct-2018 11:54:53 Setting up python (2.7.12-1~16.04) ... build 03-Oct-2018 11:54:54 Setting up libprocps4:amd64 (2:3.3.10-4ubuntu2.4) ... build 03-Oct-2018 11:54:54 Setting up procps (2:3.3.10-4ubuntu2.4) ... build 03-Oct-2018 11:54:55 update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults build 03-Oct-2018 11:54:55 Setting up openssl (1.0.2g-1ubuntu4.13) ... build 03-Oct-2018 11:54:55 Setting up ca-certificates (20170717~16.04.1) ... build 03-Oct-2018 11:54:55 debconf: unable to initialize frontend: Dialog build 03-Oct-2018 11:54:55 debconf: (TERM is not set, so the dialog frontend is not usable.) build 03-Oct-2018 11:54:55 debconf: falling back to frontend: Readline build 03-Oct-2018 11:54:55 debconf: unable to initialize frontend: Readline build 03-Oct-2018 11:54:55 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) build 03-Oct-2018 11:54:55 debconf: falling back to frontend: Teletype build 03-Oct-2018 11:54:57 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 11:54:57 Processing triggers for ca-certificates (20170717~16.04.1) ... build 03-Oct-2018 11:54:57 Updating certificates in /etc/ssl/certs... build 03-Oct-2018 11:54:59 17 added, 42 removed; done. build 03-Oct-2018 11:54:59 Running hooks in /etc/ca-certificates/update.d... build 03-Oct-2018 11:54:59 done. build 03-Oct-2018 11:55:00 Reading package lists... build 03-Oct-2018 11:55:00 Building dependency tree... build 03-Oct-2018 11:55:00 Reading state information... build 03-Oct-2018 11:55:00 The following additional packages will be installed: build 03-Oct-2018 11:55:00 autoconf automake autotools-dev binutils bsdmainutils build-essential bzip2 build 03-Oct-2018 11:55:00 bzip2-doc cdbs cpp cpp-5 curl dbus debhelper dh-strip-nondeterminism build 03-Oct-2018 11:55:00 dh-translations dpkg-dev fakeroot file fontconfig fontconfig-config build 03-Oct-2018 11:55:00 fonts-dejavu-core g++ g++-5 gcc gcc-5 gettext gettext-base gfortran build 03-Oct-2018 11:55:00 gfortran-5 ghostscript gir1.2-freedesktop gir1.2-gdkpixbuf-2.0 build 03-Oct-2018 11:55:00 gir1.2-glib-2.0 gir1.2-rsvg-2.0 groff-base gsfonts hicolor-icon-theme build 03-Oct-2018 11:55:00 icu-devtools ifupdown imagemagick-common intltool intltool-debian iproute2 build 03-Oct-2018 11:55:00 isc-dhcp-client isc-dhcp-common javascript-common krb5-locales build 03-Oct-2018 11:55:00 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl build 03-Oct-2018 11:55:00 libarchive-zip-perl libasan2 libasn1-8-heimdal libasprintf-dev build 03-Oct-2018 11:55:00 libasprintf0v5 libatk1.0-0 libatk1.0-data libatm1 libatomic1 build 03-Oct-2018 11:55:00 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 build 03-Oct-2018 11:55:00 libblas-common libblas-dev libblas3 libbsd0 libbz2-dev libc-dev-bin build 03-Oct-2018 11:55:00 libc6-dev libcairo-gobject2 libcairo-script-interpreter2 libcairo2 build 03-Oct-2018 11:55:00 libcap-ng0 libcc1-0 libcdt5 libcgraph6 libcilkrts5 libcroco3 libcups2 build 03-Oct-2018 11:55:00 libcupsfilters1 libcupsimage2 libcurl3 libcurl3-gnutls libdatrie1 build 03-Oct-2018 11:55:00 libdbus-1-3 libdjvulibre-dev libdjvulibre-text libdjvulibre21 build 03-Oct-2018 11:55:00 libdns-export162 libdpkg-perl libdrm-amdgpu1 libdrm-common libdrm-dev build 03-Oct-2018 11:55:00 libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 build 03-Oct-2018 11:55:00 libencode-locale-perl libexif-dev libexif12 libexpat1-dev libfakeroot build 03-Oct-2018 11:55:00 libfftw3-double3 libfile-basedir-perl libfile-desktopentry-perl build 03-Oct-2018 11:55:00 libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl build 03-Oct-2018 11:55:00 libfile-stripnondeterminism-perl libfont-afm-perl libfontconfig1 build 03-Oct-2018 11:55:00 libfontconfig1-dev libfontenc1 libfreetype6 libfreetype6-dev libgcc-5-dev build 03-Oct-2018 11:55:00 libgd3 libgdbm3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common build 03-Oct-2018 11:55:00 libgdk-pixbuf2.0-dev libgettextpo-dev libgettextpo0 libgfortran-5-dev build 03-Oct-2018 11:55:00 libgfortran3 libgirepository-1.0-1 libgl1-mesa-dev libgl1-mesa-dri build 03-Oct-2018 11:55:00 libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-bin libglib2.0-data build 03-Oct-2018 11:55:00 libglib2.0-dev libglu1-mesa libgmp10 libgnutls30 libgomp1 libgraphite2-3 build 03-Oct-2018 11:55:00 libgraphviz-dev libgs9 libgs9-common libgssapi-krb5-2 libgssapi3-heimdal build 03-Oct-2018 11:55:00 libgtk2.0-0 libgtk2.0-bin libgtk2.0-common libgvc6 libgvc6-plugins-gtk build 03-Oct-2018 11:55:00 libgvpr2 libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal build 03-Oct-2018 11:55:00 libheimntlm0-heimdal libhogweed4 libhtml-form-perl libhtml-format-perl build 03-Oct-2018 11:55:00 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl build 03-Oct-2018 11:55:00 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl build 03-Oct-2018 11:55:00 libhttp-message-perl libhttp-negotiate-perl libhx509-5-heimdal libice-dev build 03-Oct-2018 11:55:00 libice6 libicu-dev libicu55 libidn11 libijs-0.35 libilmbase-dev libilmbase12 build 03-Oct-2018 11:55:00 libio-html-perl libio-socket-ssl-perl libipc-system-simple-perl build 03-Oct-2018 11:55:00 libisc-export160 libisl15 libitm1 libjasper-dev libjasper1 libjbig-dev build 03-Oct-2018 11:55:00 libjbig0 libjbig2dec0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 build 03-Oct-2018 11:55:00 libjpeg8-dev libjs-jquery libk5crypto3 libkeyutils1 libkrb5-26-heimdal build 03-Oct-2018 11:55:00 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2 liblcms2-dev build 03-Oct-2018 11:55:00 libldap-2.4-2 libllvm6.0 liblqr-1-0 liblqr-1-0-dev liblsan0 libltdl-dev build 03-Oct-2018 11:55:00 libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev build 03-Oct-2018 11:55:00 liblzo2-2 libmagic1 libmagick++-6-headers libmagick++-6.q16-5v5 build 03-Oct-2018 11:55:00 libmagick++-6.q16-dev libmagickcore-6-arch-config libmagickcore-6-headers build 03-Oct-2018 11:55:00 libmagickcore-6.q16-2 libmagickcore-6.q16-2-extra libmagickcore-6.q16-dev build 03-Oct-2018 11:55:00 libmagickwand-6-headers libmagickwand-6.q16-2 libmagickwand-6.q16-dev build 03-Oct-2018 11:55:00 libmail-sendmail-perl libmailtools-perl libmariadb2 libmnl0 libmpc3 libmpfr4 build 03-Oct-2018 11:55:00 libmpx0 libncurses5-dev libnet-dbus-perl libnet-http-perl build 03-Oct-2018 11:55:00 libnet-smtp-ssl-perl libnet-ssleay-perl libnettle6 libopenexr-dev build 03-Oct-2018 11:55:00 libopenexr22 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 build 03-Oct-2018 11:55:00 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpciaccess0 build 03-Oct-2018 11:55:00 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.22 libpipeline1 build 03-Oct-2018 11:55:00 libpixman-1-0 libpixman-1-dev libpng12-0 libpng12-dev libpthread-stubs0-dev build 03-Oct-2018 11:55:00 libquadmath0 libreadline-dev libreadline6-dev libroken18-heimdal librsvg2-2 build 03-Oct-2018 11:55:00 librsvg2-common librsvg2-dev librtmp1 libsasl2-2 libsasl2-modules build 03-Oct-2018 11:55:00 libsasl2-modules-db libsensors4 libsigsegv2 libsm-dev libsm6 libssl-doc build 03-Oct-2018 11:55:00 libstdc++-5-dev libsys-hostname-long-perl libtasn1-6 libtcl8.6 build 03-Oct-2018 11:55:00 libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 build 03-Oct-2018 11:55:00 libtiff5-dev libtiffxx5 libtimedate-perl libtinfo-dev libtk8.6 libtool build 03-Oct-2018 11:55:00 libtsan0 libtxc-dxtn-s2tc0 libubsan0 libunistring0 liburi-perl libvpx3 build 03-Oct-2018 11:55:00 libwind0-heimdal libwmf-dev libwmf0.2-7 libwww-perl libwww-robotrules-perl build 03-Oct-2018 11:55:00 libx11-6 libx11-data libx11-dev libx11-doc libx11-protocol-perl build 03-Oct-2018 11:55:00 libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0 build 03-Oct-2018 11:55:00 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev build 03-Oct-2018 11:55:00 libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev build 03-Oct-2018 11:55:00 libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev build 03-Oct-2018 11:55:00 libxcb-shm0 libxcb-shm0-dev libxcb-sync-dev libxcb-sync1 libxcb-xfixes0 build 03-Oct-2018 11:55:00 libxcb-xfixes0-dev libxcb1 libxcb1-dev libxcomposite1 libxcursor1 build 03-Oct-2018 11:55:00 libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxdot4 libxext-dev build 03-Oct-2018 11:55:00 libxext6 libxfixes-dev libxfixes3 libxft2 libxi6 libxinerama1 build 03-Oct-2018 11:55:00 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2 libxmu6 build 03-Oct-2018 11:55:00 libxmuu1 libxpm4 libxrandr2 libxrender-dev libxrender1 libxshmfence-dev build 03-Oct-2018 11:55:00 libxshmfence1 libxss1 libxt-dev libxt6 libxtables11 libxtst6 libxv1 build 03-Oct-2018 11:55:00 libxxf86dga1 libxxf86vm-dev libxxf86vm1 linux-libc-dev m4 make man-db build 03-Oct-2018 11:55:00 manpages manpages-dev netbase patch perl perl-modules-5.22 pkg-config build 03-Oct-2018 11:55:00 po-debconf poppler-data python-pkg-resources python-scour python-six build 03-Oct-2018 11:55:00 r-base-core r-base-dev r-base-html r-cran-boot r-cran-class r-cran-cluster build 03-Oct-2018 11:55:00 r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass build 03-Oct-2018 11:55:00 r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart build 03-Oct-2018 11:55:00 r-cran-spatial r-cran-survival r-doc-html r-recommended rename sgml-base build 03-Oct-2018 11:55:00 shared-mime-info tzdata ucf unzip x11-common x11-utils x11-xserver-utils build 03-Oct-2018 11:55:00 x11proto-core-dev x11proto-damage-dev x11proto-dri2-dev x11proto-fixes-dev build 03-Oct-2018 11:55:00 x11proto-gl-dev x11proto-input-dev x11proto-kb-dev x11proto-render-dev build 03-Oct-2018 11:55:00 x11proto-xext-dev x11proto-xf86vidmode-dev xdg-user-dirs xdg-utils xml-core build 03-Oct-2018 11:55:00 xorg-sgml-doctools xtrans-dev xz-utils zip zlib1g-dev build 03-Oct-2018 11:55:00 Suggested packages: build 03-Oct-2018 11:55:00 autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican build 03-Oct-2018 11:55:00 | wordlist whois vacation devscripts cpp-doc gcc-5-locales dbus-user-session build 03-Oct-2018 11:55:00 | dbus-x11 dh-make debian-keyring g++-multilib g++-5-multilib gcc-5-doc build 03-Oct-2018 11:55:00 libstdc++6-5-dbg gcc-multilib flex bison gdb gcc-doc gcc-5-multilib build 03-Oct-2018 11:55:00 libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan2-dbg build 03-Oct-2018 11:55:00 liblsan0-dbg libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx0-dbg build 03-Oct-2018 11:55:00 libquadmath0-dbg gettext-doc autopoint gfortran-multilib gfortran-doc build 03-Oct-2018 11:55:00 gfortran-5-multilib gfortran-5-doc libgfortran3-dbg ghostscript-x hpijs build 03-Oct-2018 11:55:00 groff ppp rdnssd iproute2-doc resolvconf avahi-autoipd isc-dhcp-client-ddns build 03-Oct-2018 11:55:00 apparmor apache2 | lighttpd | httpd libdigest-hmac-perl libgssapi-perl build 03-Oct-2018 11:55:00 liblapack-doc-man liblapack-doc glibc-doc libcairo2-doc cups-common build 03-Oct-2018 11:55:00 libcurl4-doc libcurl3-dbg libidn11-dev libkrb5-dev libldap2-dev librtmp-dev build 03-Oct-2018 11:55:00 libfftw3-bin libfftw3-dev libgd-tools libglib2.0-doc gnutls-bin fonts-droid build 03-Oct-2018 11:55:00 texlive-lang-cjk krb5-doc krb5-user gvfs libdata-dump-perl libice-doc build 03-Oct-2018 11:55:00 icu-doc libjasper-runtime liblcms2-utils libtool-doc libcrypt-ssleay-perl build 03-Oct-2018 11:55:00 liblzma-doc inkscape ncurses-doc pciutils readline-doc librsvg2-bin build 03-Oct-2018 11:55:00 librsvg2-doc libsasl2-modules-otp libsasl2-modules-ldap libsasl2-modules-sql build 03-Oct-2018 11:55:00 libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal lm-sensors build 03-Oct-2018 11:55:00 libsm-doc libstdc++-5-doc tcl8.6 tk8.6 gcj-jdk libwmf-doc libwmf0.2-7-gtk build 03-Oct-2018 11:55:00 libauthen-ntlm-perl libxcb-doc libxext-doc libunicode-map8-perl build 03-Oct-2018 11:55:00 libunicode-string-perl xml-twig-tools libxt-doc make-doc less www-browser ed build 03-Oct-2018 11:55:00 diffutils-doc perl-doc libterm-readline-gnu-perl build 03-Oct-2018 11:55:00 | libterm-readline-perl-perl libmail-box-perl poppler-utils build 03-Oct-2018 11:55:00 fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic build 03-Oct-2018 11:55:00 | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum build 03-Oct-2018 11:55:00 python-setuptools python-rsvg python-cairo ess r-doc-info | r-doc-pdf build 03-Oct-2018 11:55:00 r-mathlib texlive-base texlive-latex-base texlive-generic-recommended build 03-Oct-2018 11:55:00 texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils build 03-Oct-2018 11:55:00 texlive-latex-recommended texlive-latex-extra texinfo mozilla | www-browser build 03-Oct-2018 11:55:00 sgml-base-doc mesa-utils nickle cairo-5c xorg-docs-core gvfs-bin build 03-Oct-2018 11:55:00 The following NEW packages will be installed: build 03-Oct-2018 11:55:00 autoconf automake autotools-dev binutils bsdmainutils build-essential bzip2 build 03-Oct-2018 11:55:00 bzip2-doc cdbs cpp cpp-5 curl dbus debhelper dh-strip-nondeterminism build 03-Oct-2018 11:55:00 dh-translations dpkg-dev fakeroot file fontconfig fontconfig-config build 03-Oct-2018 11:55:00 fonts-dejavu-core g++ g++-5 gcc gcc-5 gettext gettext-base gfortran build 03-Oct-2018 11:55:00 gfortran-5 ghostscript gir1.2-freedesktop gir1.2-gdkpixbuf-2.0 build 03-Oct-2018 11:55:00 gir1.2-glib-2.0 gir1.2-rsvg-2.0 groff-base gsfonts hicolor-icon-theme build 03-Oct-2018 11:55:00 icu-devtools ifupdown imagemagick-common intltool intltool-debian iproute2 build 03-Oct-2018 11:55:00 isc-dhcp-client isc-dhcp-common javascript-common krb5-locales build 03-Oct-2018 11:55:00 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl build 03-Oct-2018 11:55:00 libarchive-zip-perl libasan2 libasn1-8-heimdal libasprintf-dev build 03-Oct-2018 11:55:00 libasprintf0v5 libatk1.0-0 libatk1.0-data libatm1 libatomic1 build 03-Oct-2018 11:55:00 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 build 03-Oct-2018 11:55:00 libblas-common libblas-dev libblas3 libbsd0 libbz2-dev libc-dev-bin build 03-Oct-2018 11:55:00 libc6-dev libcairo-gobject2 libcairo-script-interpreter2 libcairo2 build 03-Oct-2018 11:55:00 libcairo2-dev libcap-ng0 libcc1-0 libcdt5 libcgraph6 libcilkrts5 libcroco3 build 03-Oct-2018 11:55:00 libcups2 libcupsfilters1 libcupsimage2 libcurl3 libcurl3-gnutls build 03-Oct-2018 11:55:00 libcurl4-openssl-dev libdatrie1 libdbus-1-3 libdjvulibre-dev build 03-Oct-2018 11:55:00 libdjvulibre-text libdjvulibre21 libdns-export162 libdpkg-perl build 03-Oct-2018 11:55:00 libdrm-amdgpu1 libdrm-common libdrm-dev libdrm-intel1 libdrm-nouveau2 build 03-Oct-2018 11:55:00 libdrm-radeon1 libdrm2 libedit2 libelf1 libencode-locale-perl libexif-dev build 03-Oct-2018 11:55:00 libexif12 libexpat1-dev libfakeroot libfftw3-double3 libfile-basedir-perl build 03-Oct-2018 11:55:00 libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl build 03-Oct-2018 11:55:00 libfile-mimeinfo-perl libfile-stripnondeterminism-perl libfont-afm-perl build 03-Oct-2018 11:55:00 libfontconfig1 libfontconfig1-dev libfontenc1 libfreetype6 libfreetype6-dev build 03-Oct-2018 11:55:00 libgcc-5-dev libgd3 libgdbm3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common build 03-Oct-2018 11:55:00 libgdk-pixbuf2.0-dev libgettextpo-dev libgettextpo0 libgfortran-5-dev build 03-Oct-2018 11:55:00 libgfortran3 libgirepository-1.0-1 libgl1-mesa-dev libgl1-mesa-dri build 03-Oct-2018 11:55:00 libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-bin libglib2.0-data build 03-Oct-2018 11:55:00 libglib2.0-dev libglu1-mesa libglu1-mesa-dev libgmp10 libgnutls30 libgomp1 build 03-Oct-2018 11:55:00 libgraphite2-3 libgraphviz-dev libgs9 libgs9-common libgssapi-krb5-2 build 03-Oct-2018 11:55:00 libgssapi3-heimdal libgtk2.0-0 libgtk2.0-bin libgtk2.0-common libgvc6 build 03-Oct-2018 11:55:00 libgvc6-plugins-gtk libgvpr2 libharfbuzz0b libhcrypto4-heimdal build 03-Oct-2018 11:55:00 libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 libhtml-form-perl build 03-Oct-2018 11:55:00 libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl build 03-Oct-2018 11:55:00 libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl build 03-Oct-2018 11:55:00 libhttp-message-perl libhttp-negotiate-perl libhx509-5-heimdal libice-dev build 03-Oct-2018 11:55:00 libice6 libicu-dev libicu55 libidn11 libijs-0.35 libilmbase-dev libilmbase12 build 03-Oct-2018 11:55:00 libio-html-perl libio-socket-ssl-perl libipc-system-simple-perl build 03-Oct-2018 11:55:00 libisc-export160 libisl15 libitm1 libjasper-dev libjasper1 libjbig-dev build 03-Oct-2018 11:55:00 libjbig0 libjbig2dec0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 build 03-Oct-2018 11:55:00 libjpeg8-dev libjs-jquery libk5crypto3 libkeyutils1 libkrb5-26-heimdal build 03-Oct-2018 11:55:00 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2 liblcms2-dev build 03-Oct-2018 11:55:00 libldap-2.4-2 libllvm6.0 liblqr-1-0 liblqr-1-0-dev liblsan0 libltdl-dev build 03-Oct-2018 11:55:00 libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev build 03-Oct-2018 11:55:00 liblzo2-2 libmagic1 libmagick++-6-headers libmagick++-6.q16-5v5 build 03-Oct-2018 11:55:00 libmagick++-6.q16-dev libmagick++-dev libmagickcore-6-arch-config build 03-Oct-2018 11:55:00 libmagickcore-6-headers libmagickcore-6.q16-2 libmagickcore-6.q16-2-extra build 03-Oct-2018 11:55:00 libmagickcore-6.q16-dev libmagickwand-6-headers libmagickwand-6.q16-2 build 03-Oct-2018 11:55:00 libmagickwand-6.q16-dev libmail-sendmail-perl libmailtools-perl build 03-Oct-2018 11:55:00 libmariadb-client-lgpl-dev libmariadb2 libmnl0 libmpc3 libmpfr4 libmpx0 build 03-Oct-2018 11:55:00 libncurses5-dev libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl build 03-Oct-2018 11:55:00 libnet-ssleay-perl libnettle6 libopenexr-dev libopenexr22 libp11-kit0 build 03-Oct-2018 11:55:00 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils build 03-Oct-2018 11:55:00 libpaper1 libpathplan4 libpciaccess0 libpcre16-3 libpcre3-dev libpcre32-3 build 03-Oct-2018 11:55:00 libpcrecpp0v5 libperl5.22 libpipeline1 libpixman-1-0 libpixman-1-dev build 03-Oct-2018 11:55:00 libpng12-0 libpng12-dev libpthread-stubs0-dev libquadmath0 libreadline-dev build 03-Oct-2018 11:55:00 libreadline6-dev libroken18-heimdal librsvg2-2 librsvg2-common librsvg2-dev build 03-Oct-2018 11:55:00 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsensors4 build 03-Oct-2018 11:55:00 libsigsegv2 libsm-dev libsm6 libssl-dev libssl-doc libstdc++-5-dev build 03-Oct-2018 11:55:00 libsys-hostname-long-perl libtasn1-6 libtcl8.6 libtext-iconv-perl build 03-Oct-2018 11:55:00 libthai-data libthai0 libtie-ixhash-perl libtiff5 libtiff5-dev libtiffxx5 build 03-Oct-2018 11:55:00 libtimedate-perl libtinfo-dev libtk8.6 libtool libtsan0 libtxc-dxtn-s2tc0 build 03-Oct-2018 11:55:00 libubsan0 libunistring0 liburi-perl libvpx3 libwind0-heimdal libwmf-dev build 03-Oct-2018 11:55:00 libwmf0.2-7 libwww-perl libwww-robotrules-perl libx11-6 libx11-data build 03-Oct-2018 11:55:00 libx11-dev libx11-doc libx11-protocol-perl libx11-xcb-dev libx11-xcb1 build 03-Oct-2018 11:55:00 libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 build 03-Oct-2018 11:55:00 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-present-dev build 03-Oct-2018 11:55:00 libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render0 build 03-Oct-2018 11:55:00 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0 build 03-Oct-2018 11:55:00 libxcb-shm0-dev libxcb-sync-dev libxcb-sync1 libxcb-xfixes0 build 03-Oct-2018 11:55:00 libxcb-xfixes0-dev libxcb1 libxcb1-dev libxcomposite1 libxcursor1 build 03-Oct-2018 11:55:00 libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxdot4 libxext-dev build 03-Oct-2018 11:55:00 libxext6 libxfixes-dev libxfixes3 libxft2 libxi6 libxinerama1 build 03-Oct-2018 11:55:00 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2 build 03-Oct-2018 11:55:00 libxml2-dev libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender-dev libxrender1 build 03-Oct-2018 11:55:00 libxshmfence-dev libxshmfence1 libxss1 libxt-dev libxt6 libxtables11 build 03-Oct-2018 11:55:00 libxtst6 libxv1 libxxf86dga1 libxxf86vm-dev libxxf86vm1 linux-libc-dev m4 build 03-Oct-2018 11:55:00 make man-db manpages manpages-dev mesa-common-dev netbase patch perl build 03-Oct-2018 11:55:00 perl-modules-5.22 pkg-config po-debconf poppler-data python-pkg-resources build 03-Oct-2018 11:55:00 python-scour python-six r-base r-base-core r-base-dev r-base-html build 03-Oct-2018 11:55:00 r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign build 03-Oct-2018 11:55:00 r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv build 03-Oct-2018 11:55:00 r-cran-nlme r-cran-nnet r-cran-rgl r-cran-rpart r-cran-spatial build 03-Oct-2018 11:55:00 r-cran-survival r-doc-html r-recommended rename sgml-base shared-mime-info build 03-Oct-2018 11:55:00 tzdata ucf unzip x11-common x11-utils x11-xserver-utils x11proto-core-dev build 03-Oct-2018 11:55:00 x11proto-damage-dev x11proto-dri2-dev x11proto-fixes-dev x11proto-gl-dev build 03-Oct-2018 11:55:00 x11proto-input-dev x11proto-kb-dev x11proto-render-dev x11proto-xext-dev build 03-Oct-2018 11:55:00 x11proto-xf86vidmode-dev xdg-user-dirs xdg-utils xml-core xorg-sgml-doctools build 03-Oct-2018 11:55:00 xtrans-dev xz-utils zip zlib1g-dev build 03-Oct-2018 11:55:01 0 upgraded, 443 newly installed, 0 to remove and 0 not upgraded. build 03-Oct-2018 11:55:01 Need to get 207 MB of archives. build 03-Oct-2018 11:55:01 After this operation, 855 MB of additional disk space will be used. build 03-Oct-2018 11:55:01 Get:1 http://archive.ubuntu.com/ubuntu xenial/main amd64 libatm1 amd64 1:2.5.1-1.5 [24.2 kB] build 03-Oct-2018 11:55:02 Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmnl0 amd64 1.0.3-5 [12.0 kB] build 03-Oct-2018 11:55:02 Get:3 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgdbm3 amd64 1.8.3-13.1 [16.9 kB] build 03-Oct-2018 11:55:02 Get:4 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libglib2.0-0 amd64 2.48.2-0ubuntu4.1 [1120 kB] build 03-Oct-2018 11:55:02 Get:5 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] build 03-Oct-2018 11:55:02 Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxdmcp6 amd64 1:1.1.2-1.1 [11.0 kB] build 03-Oct-2018 11:55:02 Get:7 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb1 amd64 1.11.1-1ubuntu1 [40.0 kB] build 03-Oct-2018 11:55:02 Get:8 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-data all 2:1.6.3-1ubuntu2.1 [113 kB] build 03-Oct-2018 11:55:02 Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-6 amd64 2:1.6.3-1ubuntu2.1 [570 kB] build 03-Oct-2018 11:55:02 Get:10 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB] build 03-Oct-2018 11:55:02 Get:11 http://archive.ubuntu.com/ubuntu xenial/main amd64 groff-base amd64 1.22.3-7 [1151 kB] build 03-Oct-2018 11:55:02 Get:12 http://archive.ubuntu.com/ubuntu xenial/main amd64 bsdmainutils amd64 9.0.6ubuntu3 [174 kB] build 03-Oct-2018 11:55:02 Get:13 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpipeline1 amd64 1.4.1-2 [24.6 kB] build 03-Oct-2018 11:55:02 Get:14 http://archive.ubuntu.com/ubuntu xenial/main amd64 man-db amd64 2.7.5-1 [854 kB] build 03-Oct-2018 11:55:02 Get:15 http://archive.ubuntu.com/ubuntu xenial/main amd64 sgml-base all 1.26+nmu4ubuntu1 [12.5 kB] build 03-Oct-2018 11:55:02 Get:16 http://archive.ubuntu.com/ubuntu xenial/main amd64 fonts-dejavu-core all 2.35-1 [1039 kB] build 03-Oct-2018 11:55:02 Get:17 http://archive.ubuntu.com/ubuntu xenial/main amd64 ucf all 3.0036 [52.9 kB] build 03-Oct-2018 11:55:02 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 fontconfig-config all 2.11.94-0ubuntu1.1 [49.9 kB] build 03-Oct-2018 11:55:02 Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpng12-0 amd64 1.2.54-1ubuntu1.1 [116 kB] build 03-Oct-2018 11:55:02 Get:20 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfreetype6 amd64 2.6.1-0.1ubuntu2.3 [316 kB] build 03-Oct-2018 11:55:02 Get:21 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfontconfig1 amd64 2.11.94-0ubuntu1.1 [131 kB] build 03-Oct-2018 11:55:02 Get:22 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 fontconfig amd64 2.11.94-0ubuntu1.1 [178 kB] build 03-Oct-2018 11:55:02 Get:23 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 imagemagick-common all 8:6.8.9.9-7ubuntu5.12 [41.5 kB] build 03-Oct-2018 11:55:02 Get:24 http://archive.ubuntu.com/ubuntu xenial/main amd64 libexif12 amd64 0.6.21-2 [77.6 kB] build 03-Oct-2018 11:55:02 Get:25 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgomp1 amd64 5.4.0-6ubuntu1~16.04.10 [55.1 kB] build 03-Oct-2018 11:55:02 Get:26 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfftw3-double3 amd64 3.3.4-2ubuntu1 [718 kB] build 03-Oct-2018 11:55:02 Get:27 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 x11-common all 1:7.7+13ubuntu3.1 [22.9 kB] build 03-Oct-2018 11:55:02 Get:28 http://archive.ubuntu.com/ubuntu xenial/main amd64 libice6 amd64 2:1.0.9-1 [39.2 kB] build 03-Oct-2018 11:55:02 Get:29 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libjpeg-turbo8 amd64 1.4.2-0ubuntu3.1 [111 kB] build 03-Oct-2018 11:55:02 Get:30 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblqr-1-0 amd64 0.4.2-2 [23.6 kB] build 03-Oct-2018 11:55:03 Get:31 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblzo2-2 amd64 2.08-1.2 [48.7 kB] build 03-Oct-2018 11:55:03 Get:32 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmagickcore-6-arch-config amd64 8:6.8.9.9-7ubuntu5.12 [21.9 kB] build 03-Oct-2018 11:55:03 Get:33 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmagickcore-6-headers all 8:6.8.9.9-7ubuntu5.12 [57.0 kB] build 03-Oct-2018 11:55:03 Get:34 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjbig0 amd64 2.1-3.1 [26.6 kB] build 03-Oct-2018 11:55:03 Get:35 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] build 03-Oct-2018 11:55:03 Get:36 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 liblcms2-2 amd64 2.6-3ubuntu2.1 [136 kB] build 03-Oct-2018 11:55:03 Get:37 http://archive.ubuntu.com/ubuntu xenial/main amd64 libltdl7 amd64 2.4.6-0.1 [38.3 kB] build 03-Oct-2018 11:55:03 Get:38 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtiff5 amd64 4.0.6-1ubuntu0.4 [148 kB] build 03-Oct-2018 11:55:03 Get:39 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libicu55 amd64 55.1-7ubuntu0.4 [7646 kB] build 03-Oct-2018 11:55:03 Get:40 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libxml2 amd64 2.9.3+dfsg1-1ubuntu0.6 [697 kB] build 03-Oct-2018 11:55:03 Get:41 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmagickcore-6.q16-2 amd64 8:6.8.9.9-7ubuntu5.12 [1579 kB] build 03-Oct-2018 11:55:03 Get:42 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmagickwand-6.q16-2 amd64 8:6.8.9.9-7ubuntu5.12 [288 kB] build 03-Oct-2018 11:55:03 Get:43 http://archive.ubuntu.com/ubuntu xenial/main amd64 libilmbase12 amd64 2.2.0-11ubuntu2 [71.4 kB] build 03-Oct-2018 11:55:03 Get:44 http://archive.ubuntu.com/ubuntu xenial/main amd64 libilmbase-dev amd64 2.2.0-11ubuntu2 [70.8 kB] build 03-Oct-2018 11:55:03 Get:45 http://archive.ubuntu.com/ubuntu xenial/main amd64 libopenexr22 amd64 2.2.0-10ubuntu2 [582 kB] build 03-Oct-2018 11:55:03 Get:46 http://archive.ubuntu.com/ubuntu xenial/main amd64 libopenexr-dev amd64 2.2.0-10ubuntu2 [702 kB] build 03-Oct-2018 11:55:03 Get:47 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpcrecpp0v5 amd64 2:8.38-3.1 [15.2 kB] build 03-Oct-2018 11:55:03 Get:48 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsigsegv2 amd64 2.10-4 [14.1 kB] build 03-Oct-2018 11:55:03 Get:49 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB] build 03-Oct-2018 11:55:03 Get:50 http://archive.ubuntu.com/ubuntu xenial/main amd64 libunistring0 amd64 0.9.3-5.2ubuntu1 [279 kB] build 03-Oct-2018 11:55:03 Get:51 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcomposite1 amd64 1:0.4.4-1 [7714 B] build 03-Oct-2018 11:55:03 Get:52 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxdamage1 amd64 1:1.1.4-2 [6946 B] build 03-Oct-2018 11:55:03 Get:53 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxfixes3 amd64 1:5.0.1-2 [11.1 kB] build 03-Oct-2018 11:55:03 Get:54 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxrender1 amd64 1:0.9.9-0ubuntu1 [18.5 kB] build 03-Oct-2018 11:55:03 Get:55 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxft2 amd64 2.3.2-1 [36.1 kB] build 03-Oct-2018 11:55:03 Get:56 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxinerama1 amd64 2:1.1.3-1 [7908 B] build 03-Oct-2018 11:55:03 Get:57 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxshmfence1 amd64 1.2-1 [5042 B] build 03-Oct-2018 11:55:03 Get:58 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxss1 amd64 1:1.2.2-1 [8582 B] build 03-Oct-2018 11:55:03 Get:59 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxtst6 amd64 2:1.2.2-1 [14.1 kB] build 03-Oct-2018 11:55:03 Get:60 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxv1 amd64 2:1.0.10-1 [10.3 kB] build 03-Oct-2018 11:55:03 Get:61 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxxf86dga1 amd64 2:1.1.4-1 [13.7 kB] build 03-Oct-2018 11:55:03 Get:62 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxxf86vm1 amd64 1:1.1.4-1 [10.6 kB] build 03-Oct-2018 11:55:03 Get:63 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 perl-modules-5.22 all 5.22.1-9ubuntu0.5 [2645 kB] build 03-Oct-2018 11:55:03 Get:64 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libperl5.22 amd64 5.22.1-9ubuntu0.5 [3396 kB] build 03-Oct-2018 11:55:03 Get:65 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 perl amd64 5.22.1-9ubuntu0.5 [238 kB] build 03-Oct-2018 11:55:03 Get:66 http://archive.ubuntu.com/ubuntu xenial/main amd64 poppler-data all 0.4.7-7 [1495 kB] build 03-Oct-2018 11:55:03 Get:67 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgmp10 amd64 2:6.1.0+dfsg-2 [240 kB] build 03-Oct-2018 11:55:03 Get:68 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpfr4 amd64 3.1.4-1 [191 kB] build 03-Oct-2018 11:55:03 Get:69 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpc3 amd64 1.0.3-1 [39.7 kB] build 03-Oct-2018 11:55:03 Get:70 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtxc-dxtn-s2tc0 amd64 0~git20131104-1.1 [51.8 kB] build 03-Oct-2018 11:55:03 Get:71 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 tzdata all 2018e-0ubuntu0.16.04 [167 kB] build 03-Oct-2018 11:55:03 Get:72 http://archive.ubuntu.com/ubuntu xenial/main amd64 bzip2 amd64 1.0.6-8 [32.7 kB] build 03-Oct-2018 11:55:03 Get:73 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmagic1 amd64 1:5.25-2ubuntu1.1 [216 kB] build 03-Oct-2018 11:55:04 Get:74 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 file amd64 1:5.25-2ubuntu1.1 [21.2 kB] build 03-Oct-2018 11:55:04 Get:75 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 iproute2 amd64 4.3.0-1ubuntu3.16.04.3 [522 kB] build 03-Oct-2018 11:55:04 Get:76 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 ifupdown amd64 0.8.10ubuntu1.4 [54.9 kB] build 03-Oct-2018 11:55:04 Get:77 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libisc-export160 amd64 1:9.10.3.dfsg.P4-8ubuntu1.11 [153 kB] build 03-Oct-2018 11:55:04 Get:78 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdns-export162 amd64 1:9.10.3.dfsg.P4-8ubuntu1.11 [667 kB] build 03-Oct-2018 11:55:04 Get:79 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 isc-dhcp-client amd64 4.3.3-5ubuntu12.10 [224 kB] build 03-Oct-2018 11:55:04 Get:80 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 isc-dhcp-common amd64 4.3.3-5ubuntu12.10 [105 kB] build 03-Oct-2018 11:55:04 Get:81 http://archive.ubuntu.com/ubuntu xenial/main amd64 libbsd0 amd64 0.8.2-1 [41.7 kB] build 03-Oct-2018 11:55:04 Get:82 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libnettle6 amd64 3.2-1ubuntu0.16.04.1 [93.5 kB] build 03-Oct-2018 11:55:04 Get:83 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhogweed4 amd64 3.2-1ubuntu0.16.04.1 [136 kB] build 03-Oct-2018 11:55:04 Get:84 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libidn11 amd64 1.32-3ubuntu1.2 [46.5 kB] build 03-Oct-2018 11:55:04 Get:85 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libp11-kit0 amd64 0.23.2-5~ubuntu16.04.1 [105 kB] build 03-Oct-2018 11:55:04 Get:86 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtasn1-6 amd64 4.7-3ubuntu0.16.04.3 [43.5 kB] build 03-Oct-2018 11:55:04 Get:87 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgnutls30 amd64 3.4.10-4ubuntu1.4 [548 kB] build 03-Oct-2018 11:55:04 Get:88 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtext-iconv-perl amd64 1.7-5build4 [13.0 kB] build 03-Oct-2018 11:55:04 Get:89 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxtables11 amd64 1.6.0-2ubuntu3 [27.2 kB] build 03-Oct-2018 11:55:04 Get:90 http://archive.ubuntu.com/ubuntu xenial/main amd64 netbase all 5.3 [12.9 kB] build 03-Oct-2018 11:55:04 Get:91 http://archive.ubuntu.com/ubuntu xenial/main amd64 libcap-ng0 amd64 0.7.7-1 [10.9 kB] build 03-Oct-2018 11:55:04 Get:92 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdbus-1-3 amd64 1.10.6-1ubuntu3.3 [161 kB] build 03-Oct-2018 11:55:04 Get:93 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 dbus amd64 1.10.6-1ubuntu3.3 [142 kB] build 03-Oct-2018 11:55:04 Get:94 http://archive.ubuntu.com/ubuntu xenial/main amd64 libasprintf0v5 amd64 0.19.7-2ubuntu3 [6412 B] build 03-Oct-2018 11:55:04 Get:95 http://archive.ubuntu.com/ubuntu xenial/main amd64 gettext-base amd64 0.19.7-2ubuntu3 [47.9 kB] build 03-Oct-2018 11:55:04 Get:96 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgirepository-1.0-1 amd64 1.46.0-3ubuntu1 [88.3 kB] build 03-Oct-2018 11:55:04 Get:97 http://archive.ubuntu.com/ubuntu xenial/main amd64 gir1.2-glib-2.0 amd64 1.46.0-3ubuntu1 [127 kB] build 03-Oct-2018 11:55:04 Get:98 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 krb5-locales all 1.13.2+dfsg-5ubuntu2 [13.2 kB] build 03-Oct-2018 11:55:04 Get:99 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libroken18-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [41.4 kB] build 03-Oct-2018 11:55:04 Get:100 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasn1-8-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [174 kB] build 03-Oct-2018 11:55:04 Get:101 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5support0 amd64 1.13.2+dfsg-5ubuntu2 [30.8 kB] build 03-Oct-2018 11:55:04 Get:102 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libk5crypto3 amd64 1.13.2+dfsg-5ubuntu2 [81.2 kB] build 03-Oct-2018 11:55:04 Get:103 http://archive.ubuntu.com/ubuntu xenial/main amd64 libkeyutils1 amd64 1.5.9-8ubuntu1 [9904 B] build 03-Oct-2018 11:55:05 Get:104 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5-3 amd64 1.13.2+dfsg-5ubuntu2 [273 kB] build 03-Oct-2018 11:55:05 Get:105 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgssapi-krb5-2 amd64 1.13.2+dfsg-5ubuntu2 [120 kB] build 03-Oct-2018 11:55:05 Get:106 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhcrypto4-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [85.0 kB] build 03-Oct-2018 11:55:05 Get:107 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libheimbase1-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [29.3 kB] build 03-Oct-2018 11:55:05 Get:108 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libwind0-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [47.8 kB] build 03-Oct-2018 11:55:05 Get:109 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhx509-5-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [107 kB] build 03-Oct-2018 11:55:05 Get:110 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5-26-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [202 kB] build 03-Oct-2018 11:55:06 Get:111 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libheimntlm0-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [15.1 kB] build 03-Oct-2018 11:55:06 Get:112 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgssapi3-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [96.1 kB] build 03-Oct-2018 11:55:06 Get:113 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsasl2-modules-db amd64 2.1.26.dfsg1-14build1 [14.5 kB] build 03-Oct-2018 11:55:06 Get:114 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsasl2-2 amd64 2.1.26.dfsg1-14build1 [48.7 kB] build 03-Oct-2018 11:55:06 Get:115 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libldap-2.4-2 amd64 2.4.42+dfsg-2ubuntu3.3 [161 kB] build 03-Oct-2018 11:55:06 Get:116 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d-1ubuntu0.1 [54.4 kB] build 03-Oct-2018 11:55:06 Get:117 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcurl3-gnutls amd64 7.47.0-1ubuntu2.9 [184 kB] build 03-Oct-2018 11:55:06 Get:118 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdrm-common all 2.4.91-2~16.04.1 [4764 B] build 03-Oct-2018 11:55:06 Get:119 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdrm2 amd64 2.4.91-2~16.04.1 [30.8 kB] build 03-Oct-2018 11:55:07 Get:120 http://archive.ubuntu.com/ubuntu xenial/main amd64 libedit2 amd64 3.1-20150325-1ubuntu2 [76.5 kB] build 03-Oct-2018 11:55:07 Get:121 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libelf1 amd64 0.165-3ubuntu1.1 [43.0 kB] build 03-Oct-2018 11:55:07 Get:122 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libglib2.0-data all 2.48.2-0ubuntu4.1 [132 kB] build 03-Oct-2018 11:55:07 Get:123 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsasl2-modules amd64 2.1.26.dfsg1-14build1 [47.5 kB] build 03-Oct-2018 11:55:07 Get:124 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxmuu1 amd64 2:1.1.2-2 [9674 B] build 03-Oct-2018 11:55:07 Get:125 http://archive.ubuntu.com/ubuntu xenial/main amd64 manpages all 4.04-2 [1087 kB] build 03-Oct-2018 11:55:07 Get:126 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 shared-mime-info amd64 1.5-2ubuntu0.2 [405 kB] build 03-Oct-2018 11:55:08 Get:127 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 xdg-user-dirs amd64 0.15-2ubuntu6.16.04.1 [61.8 kB] build 03-Oct-2018 11:55:08 Get:128 http://archive.ubuntu.com/ubuntu xenial/main amd64 xml-core all 0.13+nmu2 [23.3 kB] build 03-Oct-2018 11:55:08 Get:129 http://archive.ubuntu.com/ubuntu xenial/main amd64 m4 amd64 1.4.17-5 [195 kB] build 03-Oct-2018 11:55:08 Get:130 http://archive.ubuntu.com/ubuntu xenial/main amd64 autoconf all 2.69-9 [321 kB] build 03-Oct-2018 11:55:08 Get:131 http://archive.ubuntu.com/ubuntu xenial/main amd64 autotools-dev all 20150820.1 [39.8 kB] build 03-Oct-2018 11:55:08 Get:132 http://archive.ubuntu.com/ubuntu xenial/main amd64 automake all 1:1.15-4ubuntu1 [510 kB] build 03-Oct-2018 11:55:08 Get:133 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 binutils amd64 2.26.1-1ubuntu1~16.04.7 [2309 kB] build 03-Oct-2018 11:55:09 Get:134 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc-dev-bin amd64 2.23-0ubuntu10 [68.7 kB] build 03-Oct-2018 11:55:09 Get:135 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 linux-libc-dev amd64 4.4.0-137.163 [850 kB] build 03-Oct-2018 11:55:09 Get:136 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc6-dev amd64 2.23-0ubuntu10 [2079 kB] build 03-Oct-2018 11:55:09 Get:137 http://archive.ubuntu.com/ubuntu xenial/main amd64 libisl15 amd64 0.16.1-1 [524 kB] build 03-Oct-2018 11:55:09 Get:138 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 cpp-5 amd64 5.4.0-6ubuntu1~16.04.10 [7671 kB] build 03-Oct-2018 11:55:09 Get:139 http://archive.ubuntu.com/ubuntu xenial/main amd64 cpp amd64 4:5.3.1-1ubuntu1 [27.7 kB] build 03-Oct-2018 11:55:09 Get:140 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcc1-0 amd64 5.4.0-6ubuntu1~16.04.10 [38.8 kB] build 03-Oct-2018 11:55:10 Get:141 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libitm1 amd64 5.4.0-6ubuntu1~16.04.10 [27.4 kB] build 03-Oct-2018 11:55:10 Get:142 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libatomic1 amd64 5.4.0-6ubuntu1~16.04.10 [8888 B] build 03-Oct-2018 11:55:10 Get:143 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasan2 amd64 5.4.0-6ubuntu1~16.04.10 [264 kB] build 03-Oct-2018 11:55:10 Get:144 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 liblsan0 amd64 5.4.0-6ubuntu1~16.04.10 [105 kB] build 03-Oct-2018 11:55:10 Get:145 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtsan0 amd64 5.4.0-6ubuntu1~16.04.10 [244 kB] build 03-Oct-2018 11:55:10 Get:146 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libubsan0 amd64 5.4.0-6ubuntu1~16.04.10 [95.3 kB] build 03-Oct-2018 11:55:10 Get:147 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcilkrts5 amd64 5.4.0-6ubuntu1~16.04.10 [40.1 kB] build 03-Oct-2018 11:55:10 Get:148 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmpx0 amd64 5.4.0-6ubuntu1~16.04.10 [9764 B] build 03-Oct-2018 11:55:10 Get:149 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libquadmath0 amd64 5.4.0-6ubuntu1~16.04.10 [131 kB] build 03-Oct-2018 11:55:10 Get:150 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgcc-5-dev amd64 5.4.0-6ubuntu1~16.04.10 [2228 kB] build 03-Oct-2018 11:55:11 Get:151 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gcc-5 amd64 5.4.0-6ubuntu1~16.04.10 [8426 kB] build 03-Oct-2018 11:55:11 Get:152 http://archive.ubuntu.com/ubuntu xenial/main amd64 gcc amd64 4:5.3.1-1ubuntu1 [5244 B] build 03-Oct-2018 11:55:11 Get:153 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libstdc++-5-dev amd64 5.4.0-6ubuntu1~16.04.10 [1426 kB] build 03-Oct-2018 11:55:11 Get:154 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 g++-5 amd64 5.4.0-6ubuntu1~16.04.10 [8319 kB] build 03-Oct-2018 11:55:12 Get:155 http://archive.ubuntu.com/ubuntu xenial/main amd64 g++ amd64 4:5.3.1-1ubuntu1 [1504 B] build 03-Oct-2018 11:55:12 Get:156 http://archive.ubuntu.com/ubuntu xenial/main amd64 make amd64 4.1-6 [151 kB] build 03-Oct-2018 11:55:12 Get:157 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdpkg-perl all 1.18.4ubuntu1.4 [195 kB] build 03-Oct-2018 11:55:12 Get:158 http://archive.ubuntu.com/ubuntu xenial/main amd64 xz-utils amd64 5.1.1alpha+20120614-2ubuntu2 [78.8 kB] build 03-Oct-2018 11:55:12 Get:159 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 patch amd64 2.7.5-1ubuntu0.16.04.1 [90.5 kB] build 03-Oct-2018 11:55:12 Get:160 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 dpkg-dev all 1.18.4ubuntu1.4 [584 kB] build 03-Oct-2018 11:55:12 Get:161 http://archive.ubuntu.com/ubuntu xenial/main amd64 build-essential amd64 12.1ubuntu2 [4758 B] build 03-Oct-2018 11:55:12 Get:162 http://archive.ubuntu.com/ubuntu xenial/main amd64 bzip2-doc all 1.0.6-8 [295 kB] build 03-Oct-2018 11:55:13 Get:163 http://archive.ubuntu.com/ubuntu xenial/main amd64 libcroco3 amd64 0.6.11-1 [81.6 kB] build 03-Oct-2018 11:55:13 Get:164 http://archive.ubuntu.com/ubuntu xenial/main amd64 gettext amd64 0.19.7-2ubuntu3 [1076 kB] build 03-Oct-2018 11:55:13 Get:165 http://archive.ubuntu.com/ubuntu xenial/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] build 03-Oct-2018 11:55:13 Get:166 http://archive.ubuntu.com/ubuntu xenial/main amd64 po-debconf all 1.0.19 [234 kB] build 03-Oct-2018 11:55:13 Get:167 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libarchive-zip-perl all 1.56-2ubuntu0.1 [84.7 kB] build 03-Oct-2018 11:55:13 Get:168 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfile-stripnondeterminism-perl all 0.015-1 [10.3 kB] build 03-Oct-2018 11:55:13 Get:169 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] build 03-Oct-2018 11:55:13 Get:170 http://archive.ubuntu.com/ubuntu xenial/main amd64 dh-strip-nondeterminism all 0.015-1 [4864 B] build 03-Oct-2018 11:55:13 Get:171 http://archive.ubuntu.com/ubuntu xenial/main amd64 debhelper all 9.20160115ubuntu3 [739 kB] build 03-Oct-2018 11:55:13 Get:172 http://archive.ubuntu.com/ubuntu xenial/main amd64 liburi-perl all 1.71-1 [76.9 kB] build 03-Oct-2018 11:55:14 Get:173 http://archive.ubuntu.com/ubuntu xenial/main amd64 libencode-locale-perl all 1.05-1 [12.3 kB] build 03-Oct-2018 11:55:14 Get:174 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-date-perl all 6.02-1 [10.4 kB] build 03-Oct-2018 11:55:14 Get:175 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfile-listing-perl all 6.04-1 [9774 B] build 03-Oct-2018 11:55:14 Get:176 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhtml-tagset-perl all 3.20-2 [13.5 kB] build 03-Oct-2018 11:55:14 Get:177 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhtml-parser-perl amd64 3.72-1 [86.1 kB] build 03-Oct-2018 11:55:14 Get:178 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhtml-tree-perl all 5.03-2 [197 kB] build 03-Oct-2018 11:55:14 Get:179 http://archive.ubuntu.com/ubuntu xenial/main amd64 libio-html-perl all 1.001-1 [14.9 kB] build 03-Oct-2018 11:55:14 Get:180 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblwp-mediatypes-perl all 6.02-1 [21.7 kB] build 03-Oct-2018 11:55:14 Get:181 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-message-perl all 6.11-1 [74.3 kB] build 03-Oct-2018 11:55:15 Get:182 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-cookies-perl all 6.01-1 [17.2 kB] build 03-Oct-2018 11:55:15 Get:183 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-negotiate-perl all 6.00-2 [13.4 kB] build 03-Oct-2018 11:55:15 Get:184 http://archive.ubuntu.com/ubuntu xenial/main amd64 libnet-ssleay-perl amd64 1.72-1build1 [259 kB] build 03-Oct-2018 11:55:15 Get:185 http://archive.ubuntu.com/ubuntu xenial/main amd64 libio-socket-ssl-perl all 2.024-1 [159 kB] build 03-Oct-2018 11:55:15 Get:186 http://archive.ubuntu.com/ubuntu xenial/main amd64 libnet-http-perl all 6.09-1 [24.0 kB] build 03-Oct-2018 11:55:15 Get:187 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblwp-protocol-https-perl all 6.06-2 [8682 B] build 03-Oct-2018 11:55:15 Get:188 http://archive.ubuntu.com/ubuntu xenial/main amd64 libwww-robotrules-perl all 6.01-1 [14.1 kB] build 03-Oct-2018 11:55:15 Get:189 http://archive.ubuntu.com/ubuntu xenial/main amd64 libwww-perl all 6.15-1 [146 kB] build 03-Oct-2018 11:55:15 Get:190 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxml-parser-perl amd64 2.44-1build1 [200 kB] build 03-Oct-2018 11:55:15 Get:191 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 intltool all 0.51.0-2ubuntu1.16.04.1 [45.0 kB] build 03-Oct-2018 11:55:16 Get:192 http://archive.ubuntu.com/ubuntu xenial/main amd64 dh-translations all 129 [22.1 kB] build 03-Oct-2018 11:55:16 Get:193 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-six all 1.10.0-3 [10.9 kB] build 03-Oct-2018 11:55:16 Get:194 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-pkg-resources all 20.7.0-1 [108 kB] build 03-Oct-2018 11:55:16 Get:195 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-scour all 0.32-1 [42.7 kB] build 03-Oct-2018 11:55:16 Get:196 http://archive.ubuntu.com/ubuntu xenial/main amd64 cdbs all 0.4.130ubuntu2 [42.8 kB] build 03-Oct-2018 11:55:16 Get:197 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 curl amd64 7.47.0-1ubuntu2.9 [138 kB] build 03-Oct-2018 11:55:16 Get:198 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfakeroot amd64 1.20.2-1ubuntu1 [25.5 kB] build 03-Oct-2018 11:55:16 Get:199 http://archive.ubuntu.com/ubuntu xenial/main amd64 fakeroot amd64 1.20.2-1ubuntu1 [61.8 kB] build 03-Oct-2018 11:55:16 Get:200 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran3 amd64 5.4.0-6ubuntu1~16.04.10 [260 kB] build 03-Oct-2018 11:55:16 Get:201 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran-5-dev amd64 5.4.0-6ubuntu1~16.04.10 [291 kB] build 03-Oct-2018 11:55:16 Get:202 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gfortran-5 amd64 5.4.0-6ubuntu1~16.04.10 [8043 kB] build 03-Oct-2018 11:55:17 Get:203 http://archive.ubuntu.com/ubuntu xenial/main amd64 gfortran amd64 4:5.3.1-1ubuntu1 [1288 B] build 03-Oct-2018 11:55:17 Get:204 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libavahi-common-data amd64 0.6.32~rc+dfsg-1ubuntu2.2 [21.5 kB] build 03-Oct-2018 11:55:17 Get:205 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libavahi-common3 amd64 0.6.32~rc+dfsg-1ubuntu2.2 [21.6 kB] build 03-Oct-2018 11:55:17 Get:206 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libavahi-client3 amd64 0.6.32~rc+dfsg-1ubuntu2.2 [25.2 kB] build 03-Oct-2018 11:55:17 Get:207 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcups2 amd64 2.1.3-4ubuntu0.5 [197 kB] build 03-Oct-2018 11:55:18 Get:208 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcupsfilters1 amd64 1.8.3-2ubuntu3.4 [80.5 kB] build 03-Oct-2018 11:55:18 Get:209 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcupsimage2 amd64 2.1.3-4ubuntu0.5 [16.1 kB] build 03-Oct-2018 11:55:18 Get:210 http://archive.ubuntu.com/ubuntu xenial/main amd64 libijs-0.35 amd64 0.35-12 [15.5 kB] build 03-Oct-2018 11:55:18 Get:211 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libjbig2dec0 amd64 0.12+20150918-1ubuntu0.1 [55.3 kB] build 03-Oct-2018 11:55:18 Get:212 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpaper1 amd64 1.1.24+nmu4ubuntu1 [13.7 kB] build 03-Oct-2018 11:55:18 Get:213 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgs9-common all 9.25~dfsg+1-0ubuntu0.16.04.1 [5096 kB] build 03-Oct-2018 11:55:19 Get:214 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgs9 amd64 9.25~dfsg+1-0ubuntu0.16.04.1 [2265 kB] build 03-Oct-2018 11:55:19 Get:215 http://archive.ubuntu.com/ubuntu xenial/main amd64 gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.2ubuntu1 [3374 kB] build 03-Oct-2018 11:55:19 Get:216 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 ghostscript amd64 9.25~dfsg+1-0ubuntu0.16.04.1 [47.2 kB] build 03-Oct-2018 11:55:19 Get:217 http://archive.ubuntu.com/ubuntu xenial/main amd64 gir1.2-freedesktop amd64 1.46.0-3ubuntu1 [5742 B] build 03-Oct-2018 11:55:20 Get:218 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgdk-pixbuf2.0-common all 2.32.2-1ubuntu1.5 [10.3 kB] build 03-Oct-2018 11:55:20 Get:219 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgdk-pixbuf2.0-0 amd64 2.32.2-1ubuntu1.5 [159 kB] build 03-Oct-2018 11:55:20 Get:220 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gir1.2-gdkpixbuf-2.0 amd64 2.32.2-1ubuntu1.5 [8092 B] build 03-Oct-2018 11:55:20 Get:221 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpixman-1-0 amd64 0.33.6-1 [231 kB] build 03-Oct-2018 11:55:20 Get:222 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-render0 amd64 1.11.1-1ubuntu1 [11.4 kB] build 03-Oct-2018 11:55:20 Get:223 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-shm0 amd64 1.11.1-1ubuntu1 [5588 B] build 03-Oct-2018 11:55:20 Get:224 http://archive.ubuntu.com/ubuntu xenial/main amd64 libcairo2 amd64 1.14.6-1 [555 kB] build 03-Oct-2018 11:55:20 Get:225 http://archive.ubuntu.com/ubuntu xenial/main amd64 libthai-data all 0.1.24-2 [131 kB] build 03-Oct-2018 11:55:20 Get:226 http://archive.ubuntu.com/ubuntu xenial/main amd64 libdatrie1 amd64 0.2.10-2 [17.3 kB] build 03-Oct-2018 11:55:20 Get:227 http://archive.ubuntu.com/ubuntu xenial/main amd64 libthai0 amd64 0.1.24-2 [17.3 kB] build 03-Oct-2018 11:55:21 Get:228 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpango-1.0-0 amd64 1.38.1-1 [148 kB] build 03-Oct-2018 11:55:21 Get:229 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgraphite2-3 amd64 1.3.10-0ubuntu0.16.04.1 [71.7 kB] build 03-Oct-2018 11:55:21 Get:230 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libharfbuzz0b amd64 1.0.1-1ubuntu0.1 [140 kB] build 03-Oct-2018 11:55:21 Get:231 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpangoft2-1.0-0 amd64 1.38.1-1 [33.3 kB] build 03-Oct-2018 11:55:21 Get:232 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpangocairo-1.0-0 amd64 1.38.1-1 [20.5 kB] build 03-Oct-2018 11:55:21 Get:233 http://archive.ubuntu.com/ubuntu xenial/main amd64 librsvg2-2 amd64 2.40.13-3 [93.9 kB] build 03-Oct-2018 11:55:21 Get:234 http://archive.ubuntu.com/ubuntu xenial/main amd64 gir1.2-rsvg-2.0 amd64 2.40.13-3 [3690 B] build 03-Oct-2018 11:55:21 Get:235 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 hicolor-icon-theme all 0.15-0ubuntu1.1 [7698 B] build 03-Oct-2018 11:55:21 Get:236 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 icu-devtools amd64 55.1-7ubuntu0.4 [166 kB] build 03-Oct-2018 11:55:22 Get:237 http://archive.ubuntu.com/ubuntu xenial/main amd64 javascript-common all 11 [6066 B] build 03-Oct-2018 11:55:22 Get:238 http://archive.ubuntu.com/ubuntu xenial/main amd64 libalgorithm-diff-perl all 1.19.03-1 [47.6 kB] build 03-Oct-2018 11:55:22 Get:239 http://archive.ubuntu.com/ubuntu xenial/main amd64 libalgorithm-diff-xs-perl amd64 0.04-4build1 [11.0 kB] build 03-Oct-2018 11:55:22 Get:240 http://archive.ubuntu.com/ubuntu xenial/main amd64 libalgorithm-merge-perl all 0.08-3 [12.0 kB] build 03-Oct-2018 11:55:22 Get:241 http://archive.ubuntu.com/ubuntu xenial/main amd64 libasprintf-dev amd64 0.19.7-2ubuntu3 [4734 B] build 03-Oct-2018 11:55:22 Get:242 http://archive.ubuntu.com/ubuntu xenial/main amd64 libatk1.0-data all 2.18.0-1 [17.1 kB] build 03-Oct-2018 11:55:22 Get:243 http://archive.ubuntu.com/ubuntu xenial/main amd64 libatk1.0-0 amd64 2.18.0-1 [56.9 kB] build 03-Oct-2018 11:55:22 Get:244 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas-common amd64 3.6.0-2ubuntu2 [5342 B] build 03-Oct-2018 11:55:22 Get:245 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas3 amd64 3.6.0-2ubuntu2 [147 kB] build 03-Oct-2018 11:55:22 Get:246 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas-dev amd64 3.6.0-2ubuntu2 [153 kB] build 03-Oct-2018 11:55:22 Get:247 http://archive.ubuntu.com/ubuntu xenial/main amd64 libbz2-dev amd64 1.0.6-8 [29.1 kB] build 03-Oct-2018 11:55:23 Get:248 http://archive.ubuntu.com/ubuntu xenial/main amd64 libcairo-gobject2 amd64 1.14.6-1 [17.3 kB] build 03-Oct-2018 11:55:23 Get:249 http://archive.ubuntu.com/ubuntu xenial/main amd64 libcairo-script-interpreter2 amd64 1.14.6-1 [54.3 kB] build 03-Oct-2018 11:55:23 Get:250 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libexpat1-dev amd64 2.1.0-7ubuntu0.16.04.3 [115 kB] build 03-Oct-2018 11:55:23 Get:251 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-2ubuntu4.1 [168 kB] build 03-Oct-2018 11:55:23 Get:252 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpng12-dev amd64 1.2.54-1ubuntu1.1 [183 kB] build 03-Oct-2018 11:55:23 Get:253 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfreetype6-dev amd64 2.6.1-0.1ubuntu2.3 [956 kB] build 03-Oct-2018 11:55:23 Get:254 http://archive.ubuntu.com/ubuntu xenial/main amd64 pkg-config amd64 0.29.1-0ubuntu1 [45.0 kB] build 03-Oct-2018 11:55:23 Get:255 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfontconfig1-dev amd64 2.11.94-0ubuntu1.1 [658 kB] build 03-Oct-2018 11:55:24 Get:256 http://archive.ubuntu.com/ubuntu xenial/main amd64 xorg-sgml-doctools all 1:1.11-1 [12.9 kB] build 03-Oct-2018 11:55:24 Get:257 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 x11proto-core-dev all 7.0.31-1~ubuntu16.04.2 [254 kB] build 03-Oct-2018 11:55:24 Get:258 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxau-dev amd64 1:1.0.8-1 [11.1 kB] build 03-Oct-2018 11:55:24 Get:259 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxdmcp-dev amd64 1:1.1.2-1.1 [25.1 kB] build 03-Oct-2018 11:55:24 Get:260 http://archive.ubuntu.com/ubuntu xenial/main amd64 x11proto-input-dev all 2.3.1-1 [118 kB] build 03-Oct-2018 11:55:24 Get:261 http://archive.ubuntu.com/ubuntu xenial/main amd64 x11proto-kb-dev all 1.0.7-0ubuntu1 [224 kB] build 03-Oct-2018 11:55:24 Get:262 http://archive.ubuntu.com/ubuntu xenial/main amd64 xtrans-dev all 1.3.5-1 [70.5 kB] build 03-Oct-2018 11:55:24 Get:263 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpthread-stubs0-dev amd64 0.3-4 [4068 B] build 03-Oct-2018 11:55:24 Get:264 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb1-dev amd64 1.11.1-1ubuntu1 [74.2 kB] build 03-Oct-2018 11:55:24 Get:265 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-dev amd64 2:1.6.3-1ubuntu2.1 [640 kB] build 03-Oct-2018 11:55:24 Get:266 http://archive.ubuntu.com/ubuntu xenial/main amd64 x11proto-render-dev all 2:0.11.1-2 [20.1 kB] build 03-Oct-2018 11:55:25 Get:267 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxrender-dev amd64 1:0.9.9-0ubuntu1 [24.5 kB] build 03-Oct-2018 11:55:25 Get:268 http://archive.ubuntu.com/ubuntu xenial/main amd64 x11proto-xext-dev all 7.3.0-1 [212 kB] build 03-Oct-2018 11:55:25 Get:269 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxext-dev amd64 2:1.3.3-1 [82.1 kB] build 03-Oct-2018 11:55:25 Get:270 http://archive.ubuntu.com/ubuntu xenial/main amd64 libice-dev amd64 2:1.0.9-1 [44.9 kB] build 03-Oct-2018 11:55:25 Get:271 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsm-dev amd64 2:1.2.2-1 [16.2 kB] build 03-Oct-2018 11:55:25 Get:272 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpixman-1-dev amd64 0.33.6-1 [248 kB] build 03-Oct-2018 11:55:25 Get:273 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-render0-dev amd64 1.11.1-1ubuntu1 [15.3 kB] build 03-Oct-2018 11:55:25 Get:274 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-shm0-dev amd64 1.11.1-1ubuntu1 [6604 B] build 03-Oct-2018 11:55:25 Get:275 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libglib2.0-bin amd64 2.48.2-0ubuntu4.1 [39.4 kB] build 03-Oct-2018 11:55:25 Get:276 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpcre16-3 amd64 2:8.38-3.1 [144 kB] build 03-Oct-2018 11:55:26 Get:277 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpcre32-3 amd64 2:8.38-3.1 [136 kB] build 03-Oct-2018 11:55:26 Get:278 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpcre3-dev amd64 2:8.38-3.1 [525 kB] build 03-Oct-2018 11:55:26 Get:279 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libglib2.0-dev amd64 2.48.2-0ubuntu4.1 [1379 kB] build 03-Oct-2018 11:55:26 Get:280 http://archive.ubuntu.com/ubuntu xenial/main amd64 libcairo2-dev amd64 1.14.6-1 [590 kB] build 03-Oct-2018 11:55:26 Get:281 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcdt5 amd64 2.38.0-12ubuntu2.1 [23.4 kB] build 03-Oct-2018 11:55:26 Get:282 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcgraph6 amd64 2.38.0-12ubuntu2.1 [43.6 kB] build 03-Oct-2018 11:55:26 Get:283 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcurl3 amd64 7.47.0-1ubuntu2.9 [186 kB] build 03-Oct-2018 11:55:26 Get:284 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcurl4-openssl-dev amd64 7.47.0-1ubuntu2.9 [262 kB] build 03-Oct-2018 11:55:27 Get:285 http://archive.ubuntu.com/ubuntu xenial/main amd64 libdjvulibre-text all 3.5.27.1-5 [49.3 kB] build 03-Oct-2018 11:55:27 Get:286 http://archive.ubuntu.com/ubuntu xenial/main amd64 libdjvulibre21 amd64 3.5.27.1-5 [583 kB] build 03-Oct-2018 11:55:27 Get:287 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libjpeg-turbo8-dev amd64 1.4.2-0ubuntu3.1 [254 kB] build 03-Oct-2018 11:55:27 Get:288 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1552 B] build 03-Oct-2018 11:55:27 Get:289 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B] build 03-Oct-2018 11:55:27 Get:290 http://archive.ubuntu.com/ubuntu xenial/main amd64 libdjvulibre-dev amd64 3.5.27.1-5 [2387 kB] build 03-Oct-2018 11:55:27 Get:291 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdrm-amdgpu1 amd64 2.4.91-2~16.04.1 [18.9 kB] build 03-Oct-2018 11:55:27 Get:292 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpciaccess0 amd64 0.13.4-1 [18.1 kB] build 03-Oct-2018 11:55:27 Get:293 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdrm-intel1 amd64 2.4.91-2~16.04.1 [59.9 kB] build 03-Oct-2018 11:55:28 Get:294 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdrm-radeon1 amd64 2.4.91-2~16.04.1 [21.5 kB] build 03-Oct-2018 11:55:28 Get:295 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdrm-nouveau2 amd64 2.4.91-2~16.04.1 [16.3 kB] build 03-Oct-2018 11:55:28 Get:296 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdrm-dev amd64 2.4.91-2~16.04.1 [232 kB] build 03-Oct-2018 11:55:28 Get:297 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjs-jquery all 1.11.3+dfsg-4 [161 kB] build 03-Oct-2018 11:55:28 Get:298 http://archive.ubuntu.com/ubuntu xenial/main amd64 libexif-dev amd64 0.6.21-2 [326 kB] build 03-Oct-2018 11:55:28 Get:299 http://archive.ubuntu.com/ubuntu xenial/main amd64 libipc-system-simple-perl all 1.25-3 [22.8 kB] build 03-Oct-2018 11:55:28 Get:300 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfile-basedir-perl all 0.07-1 [16.9 kB] build 03-Oct-2018 11:55:28 Get:301 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfile-desktopentry-perl all 0.22-1 [18.2 kB] build 03-Oct-2018 11:55:28 Get:302 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfile-fcntllock-perl amd64 0.22-3 [32.0 kB] build 03-Oct-2018 11:55:28 Get:303 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfile-mimeinfo-perl all 0.27-1 [45.9 kB] build 03-Oct-2018 11:55:29 Get:304 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfont-afm-perl all 1.20-1 [14.3 kB] build 03-Oct-2018 11:55:29 Get:305 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfontenc1 amd64 1:1.1.3-1 [13.9 kB] build 03-Oct-2018 11:55:29 Get:306 http://archive.ubuntu.com/ubuntu xenial/main amd64 libvpx3 amd64 1.5.0-2ubuntu1 [732 kB] build 03-Oct-2018 11:55:29 Get:307 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libxpm4 amd64 1:3.5.11-1ubuntu0.16.04.1 [33.8 kB] build 03-Oct-2018 11:55:30 Get:308 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgd3 amd64 2.1.1-4ubuntu0.16.04.10 [126 kB] build 03-Oct-2018 11:55:30 Get:309 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgdk-pixbuf2.0-dev amd64 2.32.2-1ubuntu1.5 [44.4 kB] build 03-Oct-2018 11:55:30 Get:310 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgettextpo0 amd64 0.19.7-2ubuntu3 [125 kB] build 03-Oct-2018 11:55:30 Get:311 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgettextpo-dev amd64 0.19.7-2ubuntu3 [141 kB] build 03-Oct-2018 11:55:30 Get:312 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libglapi-mesa amd64 18.0.5-0ubuntu0~16.04.1 [23.4 kB] build 03-Oct-2018 11:55:30 Get:313 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libllvm6.0 amd64 1:6.0-1ubuntu2~16.04.1 [14.3 MB] build 03-Oct-2018 11:55:31 Get:314 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsensors4 amd64 1:3.4.0-2 [28.4 kB] build 03-Oct-2018 11:55:31 Get:315 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgl1-mesa-dri amd64 18.0.5-0ubuntu0~16.04.1 [6080 kB] build 03-Oct-2018 11:55:31 Get:316 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-xcb1 amd64 2:1.6.3-1ubuntu2.1 [9044 B] build 03-Oct-2018 11:55:31 Get:317 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-dri2-0 amd64 1.11.1-1ubuntu1 [6882 B] build 03-Oct-2018 11:55:31 Get:318 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-dri3-0 amd64 1.11.1-1ubuntu1 [5218 B] build 03-Oct-2018 11:55:31 Get:319 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-glx0 amd64 1.11.1-1ubuntu1 [20.9 kB] build 03-Oct-2018 11:55:31 Get:320 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-present0 amd64 1.11.1-1ubuntu1 [5218 B] build 03-Oct-2018 11:55:31 Get:321 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-sync1 amd64 1.11.1-1ubuntu1 [8324 B] build 03-Oct-2018 11:55:32 Get:322 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgl1-mesa-glx amd64 18.0.5-0ubuntu0~16.04.1 [132 kB] build 03-Oct-2018 11:55:32 Get:323 http://archive.ubuntu.com/ubuntu xenial/main amd64 libglu1-mesa amd64 9.0.0-2.1 [168 kB] build 03-Oct-2018 11:55:32 Get:324 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 mesa-common-dev amd64 18.0.5-0ubuntu0~16.04.1 [543 kB] build 03-Oct-2018 11:55:32 Get:325 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-xcb-dev amd64 2:1.6.3-1ubuntu2.1 [9718 B] build 03-Oct-2018 11:55:32 Get:326 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-dri3-dev amd64 1.11.1-1ubuntu1 [5752 B] build 03-Oct-2018 11:55:32 Get:327 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-randr0 amd64 1.11.1-1ubuntu1 [14.4 kB] build 03-Oct-2018 11:55:32 Get:328 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-randr0-dev amd64 1.11.1-1ubuntu1 [18.2 kB] build 03-Oct-2018 11:55:32 Get:329 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-xfixes0 amd64 1.11.1-1ubuntu1 [8840 B] build 03-Oct-2018 11:55:32 Get:330 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-shape0 amd64 1.11.1-1ubuntu1 [5756 B] build 03-Oct-2018 11:55:33 Get:331 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-shape0-dev amd64 1.11.1-1ubuntu1 [6900 B] build 03-Oct-2018 11:55:33 Get:332 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-xfixes0-dev amd64 1.11.1-1ubuntu1 [11.2 kB] build 03-Oct-2018 11:55:33 Get:333 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-sync-dev amd64 1.11.1-1ubuntu1 [10.1 kB] build 03-Oct-2018 11:55:33 Get:334 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-present-dev amd64 1.11.1-1ubuntu1 [6618 B] build 03-Oct-2018 11:55:33 Get:335 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxshmfence-dev amd64 1.2-1 [3676 B] build 03-Oct-2018 11:55:33 Get:336 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-dri2-0-dev amd64 1.11.1-1ubuntu1 [8384 B] build 03-Oct-2018 11:55:33 Get:337 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-glx0-dev amd64 1.11.1-1ubuntu1 [26.9 kB] build 03-Oct-2018 11:55:33 Get:338 http://archive.ubuntu.com/ubuntu xenial/main amd64 x11proto-fixes-dev all 1:5.0-2ubuntu2 [14.2 kB] build 03-Oct-2018 11:55:33 Get:339 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxfixes-dev amd64 1:5.0.1-2 [10.9 kB] build 03-Oct-2018 11:55:33 Get:340 http://archive.ubuntu.com/ubuntu xenial/main amd64 x11proto-damage-dev all 1:1.2.1-2 [8286 B] build 03-Oct-2018 11:55:33 Get:341 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxdamage-dev amd64 1:1.1.4-2 [5028 B] build 03-Oct-2018 11:55:34 Get:342 http://archive.ubuntu.com/ubuntu xenial/main amd64 x11proto-xf86vidmode-dev all 2.3.1-2 [6116 B] build 03-Oct-2018 11:55:34 Get:343 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxxf86vm-dev amd64 1:1.1.4-1 [13.3 kB] build 03-Oct-2018 11:55:34 Get:344 http://archive.ubuntu.com/ubuntu xenial/main amd64 x11proto-dri2-dev all 2.8-2 [12.6 kB] build 03-Oct-2018 11:55:34 Get:345 http://archive.ubuntu.com/ubuntu xenial/main amd64 x11proto-gl-dev all 1.4.17-1 [17.9 kB] build 03-Oct-2018 11:55:34 Get:346 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgl1-mesa-dev amd64 18.0.5-0ubuntu0~16.04.1 [4456 B] build 03-Oct-2018 11:55:34 Get:347 http://archive.ubuntu.com/ubuntu xenial/main amd64 libglu1-mesa-dev amd64 9.0.0-2.1 [202 kB] build 03-Oct-2018 11:55:34 Get:348 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpathplan4 amd64 2.38.0-12ubuntu2.1 [26.6 kB] build 03-Oct-2018 11:55:34 Get:349 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgvc6 amd64 2.38.0-12ubuntu2.1 [591 kB] build 03-Oct-2018 11:55:34 Get:350 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgvpr2 amd64 2.38.0-12ubuntu2.1 [170 kB] build 03-Oct-2018 11:55:34 Get:351 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libxdot4 amd64 2.38.0-12ubuntu2.1 [19.4 kB] build 03-Oct-2018 11:55:34 Get:352 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgtk2.0-common all 2.24.30-1ubuntu1.16.04.2 [123 kB] build 03-Oct-2018 11:55:35 Get:353 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libxcursor1 amd64 1:1.1.14-1ubuntu0.16.04.2 [19.9 kB] build 03-Oct-2018 11:55:35 Get:354 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxi6 amd64 2:1.7.6-1 [28.6 kB] build 03-Oct-2018 11:55:35 Get:355 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxrandr2 amd64 2:1.5.0-1 [17.6 kB] build 03-Oct-2018 11:55:35 Get:356 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgtk2.0-0 amd64 2.24.30-1ubuntu1.16.04.2 [1775 kB] build 03-Oct-2018 11:55:35 Get:357 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 libgvc6-plugins-gtk amd64 2.38.0-12ubuntu2.1 [21.7 kB] build 03-Oct-2018 11:55:35 Get:358 http://archive.ubuntu.com/ubuntu xenial/main amd64 libltdl-dev amd64 2.4.6-0.1 [162 kB] build 03-Oct-2018 11:55:35 Get:359 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgraphviz-dev amd64 2.38.0-12ubuntu2.1 [61.3 kB] build 03-Oct-2018 11:55:35 Get:360 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgtk2.0-bin amd64 2.24.30-1ubuntu1.16.04.2 [9834 B] build 03-Oct-2018 11:55:35 Get:361 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhtml-form-perl all 6.03-1 [23.5 kB] build 03-Oct-2018 11:55:36 Get:362 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhtml-format-perl all 2.11-2 [41.3 kB] build 03-Oct-2018 11:55:36 Get:363 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-daemon-perl all 6.01-1 [17.0 kB] build 03-Oct-2018 11:55:36 Get:364 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libicu-dev amd64 55.1-7ubuntu0.4 [8566 kB] build 03-Oct-2018 11:55:36 Get:365 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libjasper1 amd64 1.900.1-debian1-2.4ubuntu1.2 [131 kB] build 03-Oct-2018 11:55:36 Get:366 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libjasper-dev amd64 1.900.1-debian1-2.4ubuntu1.2 [520 kB] build 03-Oct-2018 11:55:36 Get:367 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblapack3 amd64 3.6.0-2ubuntu2 [1938 kB] build 03-Oct-2018 11:55:36 Get:368 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblapack-dev amd64 3.6.0-2ubuntu2 [1948 kB] build 03-Oct-2018 11:55:36 Get:369 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 liblcms2-dev amd64 2.6-3ubuntu2.1 [4656 kB] build 03-Oct-2018 11:55:37 Get:370 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblqr-1-0-dev amd64 0.4.2-2 [71.3 kB] build 03-Oct-2018 11:55:37 Get:371 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmagickwand-6-headers all 8:6.8.9.9-7ubuntu5.12 [20.1 kB] build 03-Oct-2018 11:55:37 Get:372 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmagick++-6-headers all 8:6.8.9.9-7ubuntu5.12 [55.7 kB] build 03-Oct-2018 11:55:37 Get:373 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmagick++-6.q16-5v5 amd64 8:6.8.9.9-7ubuntu5.12 [136 kB] build 03-Oct-2018 11:55:37 Get:374 http://archive.ubuntu.com/ubuntu xenial/main amd64 libwmf0.2-7 amd64 0.2.8.4-10.5ubuntu1 [147 kB] build 03-Oct-2018 11:55:37 Get:375 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmagickcore-6.q16-2-extra amd64 8:6.8.9.9-7ubuntu5.12 [59.7 kB] build 03-Oct-2018 11:55:37 Get:376 http://archive.ubuntu.com/ubuntu xenial/main amd64 librsvg2-common amd64 2.40.13-3 [5034 B] build 03-Oct-2018 11:55:37 Get:377 http://archive.ubuntu.com/ubuntu xenial/main amd64 librsvg2-dev amd64 2.40.13-3 [103 kB] build 03-Oct-2018 11:55:37 Get:378 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjbig-dev amd64 2.1-3.1 [24.8 kB] build 03-Oct-2018 11:55:37 Get:379 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblzma-dev amd64 5.1.1alpha+20120614-2ubuntu2 [137 kB] build 03-Oct-2018 11:55:38 Get:380 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtiffxx5 amd64 4.0.6-1ubuntu0.4 [5588 B] build 03-Oct-2018 11:55:38 Get:381 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtiff5-dev amd64 4.0.6-1ubuntu0.4 [268 kB] build 03-Oct-2018 11:55:38 Get:382 http://archive.ubuntu.com/ubuntu xenial/main amd64 libwmf-dev amd64 0.2.8.4-10.5ubuntu1 [170 kB] build 03-Oct-2018 11:55:38 Get:383 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libxml2-dev amd64 2.9.3+dfsg1-1ubuntu0.6 [743 kB] build 03-Oct-2018 11:55:38 Get:384 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxt6 amd64 1:1.1.5-0ubuntu1 [160 kB] build 03-Oct-2018 11:55:38 Get:385 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxt-dev amd64 1:1.1.5-0ubuntu1 [394 kB] build 03-Oct-2018 11:55:38 Get:386 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmagickcore-6.q16-dev amd64 8:6.8.9.9-7ubuntu5.12 [918 kB] build 03-Oct-2018 11:55:38 Get:387 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmagickwand-6.q16-dev amd64 8:6.8.9.9-7ubuntu5.12 [278 kB] build 03-Oct-2018 11:55:38 Get:388 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmagick++-6.q16-dev amd64 8:6.8.9.9-7ubuntu5.12 [111 kB] build 03-Oct-2018 11:55:39 Get:389 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmagick++-dev all 8:6.8.9.9-7ubuntu5.12 [11.4 kB] build 03-Oct-2018 11:55:39 Get:390 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsys-hostname-long-perl all 1.5-1 [11.7 kB] build 03-Oct-2018 11:55:39 Get:391 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmail-sendmail-perl all 0.79.16-1 [26.5 kB] build 03-Oct-2018 11:55:39 Get:392 http://archive.ubuntu.com/ubuntu xenial/main amd64 libnet-smtp-ssl-perl all 1.03-1 [6288 B] build 03-Oct-2018 11:55:39 Get:393 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmailtools-perl all 2.13-1 [82.6 kB] build 03-Oct-2018 11:55:39 Get:394 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libmariadb2 amd64 2.0.0-1 [108 kB] build 03-Oct-2018 11:55:39 Get:395 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libmariadb-client-lgpl-dev amd64 2.0.0-1 [187 kB] build 03-Oct-2018 11:55:39 Get:396 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtinfo-dev amd64 6.0+20160213-1ubuntu1 [77.4 kB] build 03-Oct-2018 11:55:39 Get:397 http://archive.ubuntu.com/ubuntu xenial/main amd64 libncurses5-dev amd64 6.0+20160213-1ubuntu1 [175 kB] build 03-Oct-2018 11:55:39 Get:398 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxml-twig-perl all 1:3.48-1 [156 kB] build 03-Oct-2018 11:55:40 Get:399 http://archive.ubuntu.com/ubuntu xenial/main amd64 libnet-dbus-perl amd64 1.1.0-3build1 [177 kB] build 03-Oct-2018 11:55:40 Get:400 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpaper-utils amd64 1.1.24+nmu4ubuntu1 [8276 B] build 03-Oct-2018 11:55:40 Get:401 http://archive.ubuntu.com/ubuntu xenial/main amd64 libreadline6-dev amd64 6.3-8ubuntu2 [124 kB] build 03-Oct-2018 11:55:40 Get:402 http://archive.ubuntu.com/ubuntu xenial/main amd64 libreadline-dev amd64 6.3-8ubuntu2 [992 B] build 03-Oct-2018 11:55:40 Get:403 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libssl-dev amd64 1.0.2g-1ubuntu4.13 [1342 kB] build 03-Oct-2018 11:55:40 Get:404 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libssl-doc all 1.0.2g-1ubuntu4.13 [1079 kB] build 03-Oct-2018 11:55:40 Get:405 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtcl8.6 amd64 8.6.5+dfsg-2 [875 kB] build 03-Oct-2018 11:55:41 Get:406 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtie-ixhash-perl all 1.23-2 [11.2 kB] build 03-Oct-2018 11:55:41 Get:407 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtk8.6 amd64 8.6.5-1 [693 kB] build 03-Oct-2018 11:55:41 Get:408 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtool all 2.4.6-0.1 [193 kB] build 03-Oct-2018 11:55:41 Get:409 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-doc all 2:1.6.3-1ubuntu2.1 [1470 kB] build 03-Oct-2018 11:55:41 Get:410 http://archive.ubuntu.com/ubuntu xenial/main amd64 libx11-protocol-perl all 0.56-7 [149 kB] build 03-Oct-2018 11:55:41 Get:411 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxmu6 amd64 2:1.1.2-2 [46.0 kB] build 03-Oct-2018 11:55:42 Get:412 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxaw7 amd64 2:1.0.13-1 [173 kB] build 03-Oct-2018 11:55:42 Get:413 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxml-xpathengine-perl all 0.13-1 [37.1 kB] build 03-Oct-2018 11:55:42 Get:414 http://archive.ubuntu.com/ubuntu xenial/main amd64 manpages-dev all 4.04-2 [2048 kB] build 03-Oct-2018 11:55:42 Get:415 http://archive.ubuntu.com/ubuntu xenial/main amd64 zip amd64 3.0-11 [158 kB] build 03-Oct-2018 11:55:42 Get:416 http://archive.ubuntu.com/ubuntu xenial/main amd64 unzip amd64 6.0-20ubuntu1 [158 kB] build 03-Oct-2018 11:55:42 Get:417 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 xdg-utils all 1.1.1-1ubuntu1.16.04.3 [59.6 kB] build 03-Oct-2018 11:55:42 Get:418 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-base-core amd64 3.2.3-4 [20.4 MB] build 03-Oct-2018 11:55:43 Get:419 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-boot all 1.3-17-1 [571 kB] build 03-Oct-2018 11:55:43 Get:420 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-cluster amd64 2.0.3-1 [465 kB] build 03-Oct-2018 11:55:43 Get:421 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-foreign amd64 0.8.66-1 [196 kB] build 03-Oct-2018 11:55:43 Get:422 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-mass amd64 7.3-45-1 [1018 kB] build 03-Oct-2018 11:55:43 Get:423 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-kernsmooth amd64 2.23-15-1 [80.9 kB] build 03-Oct-2018 11:55:43 Get:424 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-lattice amd64 0.20-33-1 [703 kB] build 03-Oct-2018 11:55:44 Get:425 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-nlme amd64 3.1.124-1 [1986 kB] build 03-Oct-2018 11:55:44 Get:426 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-matrix amd64 1.2-3-1 [2973 kB] build 03-Oct-2018 11:55:44 Get:427 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-mgcv amd64 1.8-11-1 [1930 kB] build 03-Oct-2018 11:55:44 Get:428 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-survival amd64 2.38-3-1 [4433 kB] build 03-Oct-2018 11:55:44 Get:429 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-rpart amd64 4.1-10-1 [856 kB] build 03-Oct-2018 11:55:44 Get:430 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-class amd64 7.3-14-1 [81.1 kB] build 03-Oct-2018 11:55:44 Get:431 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-nnet amd64 7.3-12-1 [96.8 kB] build 03-Oct-2018 11:55:44 Get:432 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-spatial amd64 7.3-11-1 [118 kB] build 03-Oct-2018 11:55:45 Get:433 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-codetools all 0.2-14-1 [46.0 kB] build 03-Oct-2018 11:55:45 Get:434 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-recommended all 3.2.3-4 [2766 B] build 03-Oct-2018 11:55:45 Get:435 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-base all 3.2.3-4 [9196 B] build 03-Oct-2018 11:55:45 Get:436 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-base-dev all 3.2.3-4 [4346 B] build 03-Oct-2018 11:55:45 Get:437 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-rgl amd64 0.95.1441-1 [1647 kB] build 03-Oct-2018 11:55:45 Get:438 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-doc-html all 3.2.3-4 [511 kB] build 03-Oct-2018 11:55:45 Get:439 http://archive.ubuntu.com/ubuntu xenial/main amd64 rename all 0.20-4 [12.0 kB] build 03-Oct-2018 11:55:45 Get:440 http://archive.ubuntu.com/ubuntu xenial/main amd64 x11-utils amd64 7.7+3 [189 kB] build 03-Oct-2018 11:55:45 Get:441 http://archive.ubuntu.com/ubuntu xenial/main amd64 x11-xserver-utils amd64 7.7+7 [155 kB] build 03-Oct-2018 11:55:45 Get:442 http://archive.ubuntu.com/ubuntu xenial/main amd64 libauthen-sasl-perl all 2.1600-1 [48.7 kB] build 03-Oct-2018 11:55:46 Get:443 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-base-html all 3.2.3-4 [53.9 kB] build 03-Oct-2018 11:55:46 debconf: delaying package configuration, since apt-utils is not installed build 03-Oct-2018 11:55:46 Fetched 207 MB in 44s (4664 kB/s) build 03-Oct-2018 11:55:46 Selecting previously unselected package libatm1:amd64. build 03-Oct-2018 11:55:46 (Reading database ... build 03-Oct-2018 11:55:46 (Reading database ... 5% build 03-Oct-2018 11:55:46 (Reading database ... 10% build 03-Oct-2018 11:55:46 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build 03-Oct-2018 11:59:10 Setting up libmnl0:amd64 (1.0.3-5) ... build 03-Oct-2018 11:59:10 Setting up libgdbm3:amd64 (1.8.3-13.1) ... build 03-Oct-2018 11:59:10 Setting up libglib2.0-0:amd64 (2.48.2-0ubuntu4.1) ... build 03-Oct-2018 11:59:10 No schema files found: doing nothing. build 03-Oct-2018 11:59:10 Setting up libxau6:amd64 (1:1.0.8-1) ... build 03-Oct-2018 11:59:10 Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... build 03-Oct-2018 11:59:10 Setting up libxcb1:amd64 (1.11.1-1ubuntu1) ... build 03-Oct-2018 11:59:10 Setting up libx11-data (2:1.6.3-1ubuntu2.1) ... build 03-Oct-2018 11:59:11 Setting up libx11-6:amd64 (2:1.6.3-1ubuntu2.1) ... build 03-Oct-2018 11:59:11 Setting up libxext6:amd64 (2:1.3.3-1) ... build 03-Oct-2018 11:59:11 Setting up groff-base (1.22.3-7) ... build 03-Oct-2018 11:59:11 Setting up bsdmainutils (9.0.6ubuntu3) ... build 03-Oct-2018 11:59:11 update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode build 03-Oct-2018 11:59:11 update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode build 03-Oct-2018 11:59:11 Setting up libpipeline1:amd64 (1.4.1-2) ... build 03-Oct-2018 11:59:12 Setting up man-db (2.7.5-1) ... build 03-Oct-2018 11:59:12 debconf: unable to initialize frontend: Dialog build 03-Oct-2018 11:59:12 debconf: (TERM is not set, so the dialog frontend is not usable.) build 03-Oct-2018 11:59:12 debconf: falling back to frontend: Readline build 03-Oct-2018 11:59:12 Building database of manual pages ... build 03-Oct-2018 11:59:26 Setting up sgml-base (1.26+nmu4ubuntu1) ... build 03-Oct-2018 11:59:26 Setting up fonts-dejavu-core (2.35-1) ... build 03-Oct-2018 11:59:27 Setting up ucf (3.0036) ... build 03-Oct-2018 11:59:27 debconf: unable to initialize frontend: Dialog build 03-Oct-2018 11:59:27 debconf: (TERM is not set, so the dialog frontend is not usable.) build 03-Oct-2018 11:59:27 debconf: falling back to frontend: Readline build 03-Oct-2018 11:59:27 Setting up fontconfig-config (2.11.94-0ubuntu1.1) ... build 03-Oct-2018 11:59:29 Setting up libpng12-0:amd64 (1.2.54-1ubuntu1.1) ... build 03-Oct-2018 11:59:29 Setting up libfreetype6:amd64 (2.6.1-0.1ubuntu2.3) ... build 03-Oct-2018 11:59:30 Setting up libfontconfig1:amd64 (2.11.94-0ubuntu1.1) ... build 03-Oct-2018 11:59:30 Setting up fontconfig (2.11.94-0ubuntu1.1) ... build 03-Oct-2018 11:59:32 Regenerating fonts cache... done. build 03-Oct-2018 11:59:32 Setting up imagemagick-common (8:6.8.9.9-7ubuntu5.12) ... build 03-Oct-2018 11:59:33 Setting up libexif12:amd64 (0.6.21-2) ... build 03-Oct-2018 11:59:33 Setting up libgomp1:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 03-Oct-2018 11:59:33 Setting up libfftw3-double3:amd64 (3.3.4-2ubuntu1) ... build 03-Oct-2018 11:59:34 Setting up x11-common (1:7.7+13ubuntu3.1) ... build 03-Oct-2018 11:59:34 debconf: unable to initialize frontend: Dialog build 03-Oct-2018 11:59:34 debconf: (TERM is not set, so the dialog frontend is not usable.) build 03-Oct-2018 11:59:34 debconf: falling back to frontend: Readline build 03-Oct-2018 11:59:34 update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults build 03-Oct-2018 11:59:35 invoke-rc.d: could not determine current runlevel build 03-Oct-2018 11:59:35 invoke-rc.d: policy-rc.d denied execution of start. build 03-Oct-2018 11:59:35 Setting up libice6:amd64 (2:1.0.9-1) ... build 03-Oct-2018 11:59:35 Setting up libjpeg-turbo8:amd64 (1.4.2-0ubuntu3.1) ... build 03-Oct-2018 11:59:35 Setting up liblqr-1-0:amd64 (0.4.2-2) ... build 03-Oct-2018 11:59:35 Setting up liblzo2-2:amd64 (2.08-1.2) ... build 03-Oct-2018 11:59:35 Setting up libmagickcore-6-arch-config:amd64 (8:6.8.9.9-7ubuntu5.12) ... build 03-Oct-2018 11:59:35 Setting up libmagickcore-6-headers (8:6.8.9.9-7ubuntu5.12) ... build 03-Oct-2018 11:59:35 Setting up libjbig0:amd64 (2.1-3.1) ... build 03-Oct-2018 11:59:36 Setting up libjpeg8:amd64 (8c-2ubuntu8) ... build 03-Oct-2018 11:59:36 Setting up liblcms2-2:amd64 (2.6-3ubuntu2.1) ... build 03-Oct-2018 11:59:36 Setting up libltdl7:amd64 (2.4.6-0.1) ... build 03-Oct-2018 11:59:36 Setting up libtiff5:amd64 (4.0.6-1ubuntu0.4) ... build 03-Oct-2018 11:59:36 Setting up libicu55:amd64 (55.1-7ubuntu0.4) ... build 03-Oct-2018 11:59:36 Setting up libxml2:amd64 (2.9.3+dfsg1-1ubuntu0.6) ... build 03-Oct-2018 11:59:36 Setting up libmagickcore-6.q16-2:amd64 (8:6.8.9.9-7ubuntu5.12) ... build 03-Oct-2018 11:59:37 Setting up libmagickwand-6.q16-2:amd64 (8:6.8.9.9-7ubuntu5.12) ... build 03-Oct-2018 11:59:37 Setting up libilmbase12:amd64 (2.2.0-11ubuntu2) ... build 03-Oct-2018 11:59:37 Setting up libilmbase-dev (2.2.0-11ubuntu2) ... build 03-Oct-2018 11:59:37 Setting up libopenexr22:amd64 (2.2.0-10ubuntu2) ... build 03-Oct-2018 11:59:38 Setting up libopenexr-dev (2.2.0-10ubuntu2) ... build 03-Oct-2018 11:59:38 Setting up libpcrecpp0v5:amd64 (2:8.38-3.1) ... build 03-Oct-2018 11:59:38 Setting up libsigsegv2:amd64 (2.10-4) ... build 03-Oct-2018 11:59:38 Setting up libsm6:amd64 (2:1.2.2-1) ... build 03-Oct-2018 11:59:38 Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... build 03-Oct-2018 11:59:39 Setting up libxcomposite1:amd64 (1:0.4.4-1) ... build 03-Oct-2018 11:59:39 Setting up libxdamage1:amd64 (1:1.1.4-2) ... build 03-Oct-2018 11:59:39 Setting up libxfixes3:amd64 (1:5.0.1-2) ... build 03-Oct-2018 11:59:39 Setting up libxrender1:amd64 (1:0.9.9-0ubuntu1) ... build 03-Oct-2018 11:59:39 Setting up libxft2:amd64 (2.3.2-1) ... build 03-Oct-2018 11:59:39 Setting up libxinerama1:amd64 (2:1.1.3-1) ... build 03-Oct-2018 11:59:40 Setting up libxshmfence1:amd64 (1.2-1) ... build 03-Oct-2018 11:59:40 Setting up libxss1:amd64 (1:1.2.2-1) ... build 03-Oct-2018 11:59:40 Setting up libxtst6:amd64 (2:1.2.2-1) ... build 03-Oct-2018 11:59:41 Setting up libxv1:amd64 (2:1.0.10-1) ... build 03-Oct-2018 11:59:41 Setting up libxxf86dga1:amd64 (2:1.1.4-1) ... build 03-Oct-2018 11:59:41 Setting up libxxf86vm1:amd64 (1:1.1.4-1) ... build 03-Oct-2018 11:59:41 Setting up perl-modules-5.22 (5.22.1-9ubuntu0.5) ... build 03-Oct-2018 11:59:42 Setting up libperl5.22:amd64 (5.22.1-9ubuntu0.5) ... build 03-Oct-2018 11:59:42 Setting up perl (5.22.1-9ubuntu0.5) ... build 03-Oct-2018 11:59:42 update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode build 03-Oct-2018 11:59:42 Setting up poppler-data (0.4.7-7) ... build 03-Oct-2018 11:59:42 Setting up libgmp10:amd64 (2:6.1.0+dfsg-2) ... build 03-Oct-2018 11:59:42 Setting up libmpfr4:amd64 (3.1.4-1) ... build 03-Oct-2018 11:59:43 Setting up libmpc3:amd64 (1.0.3-1) ... build 03-Oct-2018 11:59:43 Setting up libtxc-dxtn-s2tc0:amd64 (0~git20131104-1.1) ... build 03-Oct-2018 11:59:43 update-alternatives: using /usr/lib/x86_64-linux-gnu/libtxc_dxtn_s2tc.so.0 to provide /usr/lib/x86_64-linux-gnu/libtxc_dxtn.so (libtxc-dxtn-x86_64-linux-gnu) in auto mode build 03-Oct-2018 11:59:43 Setting up tzdata (2018e-0ubuntu0.16.04) ... build 03-Oct-2018 11:59:43 debconf: unable to initialize frontend: Dialog build 03-Oct-2018 11:59:43 debconf: (TERM is not set, so the dialog frontend is not usable.) build 03-Oct-2018 11:59:43 debconf: falling back to frontend: Readline build 03-Oct-2018 11:59:43 build 03-Oct-2018 11:59:43 Current default time zone: 'Etc/UTC' build 03-Oct-2018 11:59:43 Local time is now: Wed Oct 3 16:59:43 UTC 2018. build 03-Oct-2018 11:59:43 Universal Time is now: Wed Oct 3 16:59:43 UTC 2018. build 03-Oct-2018 11:59:43 Run 'dpkg-reconfigure tzdata' if you wish to change it. build 03-Oct-2018 11:59:43 build 03-Oct-2018 11:59:43 Setting up bzip2 (1.0.6-8) ... build 03-Oct-2018 11:59:43 Setting up libmagic1:amd64 (1:5.25-2ubuntu1.1) ... build 03-Oct-2018 11:59:44 Setting up file (1:5.25-2ubuntu1.1) ... build 03-Oct-2018 11:59:44 Setting up iproute2 (4.3.0-1ubuntu3.16.04.3) ... build 03-Oct-2018 11:59:44 Setting up ifupdown (0.8.10ubuntu1.4) ... build 03-Oct-2018 11:59:45 Creating /etc/network/interfaces. build 03-Oct-2018 11:59:45 Setting up libisc-export160 (1:9.10.3.dfsg.P4-8ubuntu1.11) ... build 03-Oct-2018 11:59:45 Setting up libdns-export162 (1:9.10.3.dfsg.P4-8ubuntu1.11) ... build 03-Oct-2018 11:59:45 Setting up isc-dhcp-client (4.3.3-5ubuntu12.10) ... build 03-Oct-2018 11:59:45 Setting up isc-dhcp-common (4.3.3-5ubuntu12.10) ... build 03-Oct-2018 11:59:46 Setting up libbsd0:amd64 (0.8.2-1) ... build 03-Oct-2018 11:59:46 Setting up libnettle6:amd64 (3.2-1ubuntu0.16.04.1) ... build 03-Oct-2018 11:59:46 Setting up libhogweed4:amd64 (3.2-1ubuntu0.16.04.1) ... build 03-Oct-2018 11:59:46 Setting up libidn11:amd64 (1.32-3ubuntu1.2) ... build 03-Oct-2018 11:59:47 Setting up libp11-kit0:amd64 (0.23.2-5~ubuntu16.04.1) ... build 03-Oct-2018 11:59:47 Setting up libtasn1-6:amd64 (4.7-3ubuntu0.16.04.3) ... build 03-Oct-2018 11:59:47 Setting up libgnutls30:amd64 (3.4.10-4ubuntu1.4) ... build 03-Oct-2018 11:59:47 Setting up libtext-iconv-perl (1.7-5build4) ... build 03-Oct-2018 11:59:47 Setting up libxtables11:amd64 (1.6.0-2ubuntu3) ... build 03-Oct-2018 11:59:47 Setting up netbase (5.3) ... build 03-Oct-2018 11:59:48 Setting up libcap-ng0:amd64 (0.7.7-1) ... build 03-Oct-2018 11:59:48 Setting up libdbus-1-3:amd64 (1.10.6-1ubuntu3.3) ... build 03-Oct-2018 11:59:48 Setting up dbus (1.10.6-1ubuntu3.3) ... build 03-Oct-2018 11:59:49 Setting up libasprintf0v5:amd64 (0.19.7-2ubuntu3) ... build 03-Oct-2018 11:59:49 Setting up gettext-base (0.19.7-2ubuntu3) ... build 03-Oct-2018 11:59:49 Setting up libgirepository-1.0-1:amd64 (1.46.0-3ubuntu1) ... build 03-Oct-2018 11:59:49 Setting up gir1.2-glib-2.0:amd64 (1.46.0-3ubuntu1) ... build 03-Oct-2018 11:59:49 Setting up krb5-locales (1.13.2+dfsg-5ubuntu2) ... build 03-Oct-2018 11:59:49 Setting up libroken18-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 03-Oct-2018 11:59:50 Setting up libasn1-8-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 03-Oct-2018 11:59:50 Setting up libkrb5support0:amd64 (1.13.2+dfsg-5ubuntu2) ... build 03-Oct-2018 11:59:50 Setting up libk5crypto3:amd64 (1.13.2+dfsg-5ubuntu2) ... build 03-Oct-2018 11:59:50 Setting up libkeyutils1:amd64 (1.5.9-8ubuntu1) ... build 03-Oct-2018 11:59:50 Setting up libkrb5-3:amd64 (1.13.2+dfsg-5ubuntu2) ... build 03-Oct-2018 11:59:50 Setting up libgssapi-krb5-2:amd64 (1.13.2+dfsg-5ubuntu2) ... build 03-Oct-2018 11:59:50 Setting up libhcrypto4-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 03-Oct-2018 11:59:51 Setting up libheimbase1-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 03-Oct-2018 11:59:51 Setting up libwind0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 03-Oct-2018 11:59:51 Setting up libhx509-5-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 03-Oct-2018 11:59:51 Setting up libkrb5-26-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 03-Oct-2018 11:59:51 Setting up libheimntlm0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) 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(2.1.26.dfsg1-14build1) ... build 03-Oct-2018 11:59:53 Setting up libxmuu1:amd64 (2:1.1.2-2) ... build 03-Oct-2018 11:59:53 Setting up manpages (4.04-2) ... build 03-Oct-2018 11:59:54 Setting up shared-mime-info (1.5-2ubuntu0.2) ... build 03-Oct-2018 12:00:14 Setting up xdg-user-dirs (0.15-2ubuntu6.16.04.1) ... build 03-Oct-2018 12:00:14 Setting up xml-core (0.13+nmu2) ... build 03-Oct-2018 12:00:14 Setting up m4 (1.4.17-5) ... build 03-Oct-2018 12:00:14 Setting up autoconf (2.69-9) ... build 03-Oct-2018 12:00:15 Setting up autotools-dev (20150820.1) ... build 03-Oct-2018 12:00:15 Setting up automake (1:1.15-4ubuntu1) ... build 03-Oct-2018 12:00:15 update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode build 03-Oct-2018 12:00:15 Setting up binutils (2.26.1-1ubuntu1~16.04.7) ... build 03-Oct-2018 12:00:15 Setting up libc-dev-bin (2.23-0ubuntu10) ... build 03-Oct-2018 12:00:15 Setting up linux-libc-dev:amd64 (4.4.0-137.163) ... build 03-Oct-2018 12:00:16 Setting up libc6-dev:amd64 (2.23-0ubuntu10) ... build 03-Oct-2018 12:00:16 Setting up libisl15:amd64 (0.16.1-1) ... build 03-Oct-2018 12:00:16 Setting up cpp-5 (5.4.0-6ubuntu1~16.04.10) ... build 03-Oct-2018 12:00:16 Setting up cpp (4:5.3.1-1ubuntu1) ... build 03-Oct-2018 12:00:17 Setting up libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 03-Oct-2018 12:00:17 Setting up libitm1:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 03-Oct-2018 12:00:17 Setting up libatomic1:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 03-Oct-2018 12:00:17 Setting up libasan2:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 03-Oct-2018 12:00:17 Setting up liblsan0:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 03-Oct-2018 12:00:17 Setting up libtsan0:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 03-Oct-2018 12:00:17 Setting up libubsan0:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 03-Oct-2018 12:00:18 Setting up libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 03-Oct-2018 12:00:18 Setting up libmpx0:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 03-Oct-2018 12:00:18 Setting up libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 03-Oct-2018 12:00:18 Setting up libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 03-Oct-2018 12:00:18 Setting up gcc-5 (5.4.0-6ubuntu1~16.04.10) ... build 03-Oct-2018 12:00:18 Setting up gcc (4:5.3.1-1ubuntu1) ... build 03-Oct-2018 12:00:18 Setting up libstdc++-5-dev:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 03-Oct-2018 12:00:18 Setting up g++-5 (5.4.0-6ubuntu1~16.04.10) ... build 03-Oct-2018 12:00:19 Setting up g++ (4:5.3.1-1ubuntu1) ... build 03-Oct-2018 12:00:19 update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode build 03-Oct-2018 12:00:19 Setting up make (4.1-6) ... build 03-Oct-2018 12:00:19 Setting up libdpkg-perl (1.18.4ubuntu1.4) ... build 03-Oct-2018 12:00:19 Setting up xz-utils (5.1.1alpha+20120614-2ubuntu2) ... build 03-Oct-2018 12:00:19 update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode build 03-Oct-2018 12:00:19 Setting up patch (2.7.5-1ubuntu0.16.04.1) ... build 03-Oct-2018 12:00:19 Setting up dpkg-dev (1.18.4ubuntu1.4) ... build 03-Oct-2018 12:00:19 Setting up build-essential (12.1ubuntu2) ... build 03-Oct-2018 12:00:20 Setting up bzip2-doc (1.0.6-8) ... build 03-Oct-2018 12:00:20 Setting up libcroco3:amd64 (0.6.11-1) ... build 03-Oct-2018 12:00:20 Setting up gettext (0.19.7-2ubuntu3) ... build 03-Oct-2018 12:00:20 Setting up intltool-debian (0.35.0+20060710.4) ... build 03-Oct-2018 12:00:20 Setting up po-debconf (1.0.19) ... build 03-Oct-2018 12:00:20 Setting up libarchive-zip-perl (1.56-2ubuntu0.1) ... build 03-Oct-2018 12:00:20 Setting up libfile-stripnondeterminism-perl (0.015-1) ... build 03-Oct-2018 12:00:21 Setting up libtimedate-perl (2.3000-2) ... build 03-Oct-2018 12:00:21 Setting up liburi-perl (1.71-1) ... build 03-Oct-2018 12:00:21 Setting up libencode-locale-perl (1.05-1) ... build 03-Oct-2018 12:00:21 Setting up libhttp-date-perl (6.02-1) ... build 03-Oct-2018 12:00:21 Setting up libfile-listing-perl (6.04-1) ... build 03-Oct-2018 12:00:21 Setting up libhtml-tagset-perl (3.20-2) ... build 03-Oct-2018 12:00:22 Setting up libhtml-parser-perl (3.72-1) ... build 03-Oct-2018 12:00:22 Setting up libhtml-tree-perl (5.03-2) ... build 03-Oct-2018 12:00:22 Setting up libio-html-perl (1.001-1) ... build 03-Oct-2018 12:00:22 Setting up liblwp-mediatypes-perl (6.02-1) ... build 03-Oct-2018 12:00:22 Setting up libhttp-message-perl (6.11-1) ... build 03-Oct-2018 12:00:22 Setting up libhttp-cookies-perl (6.01-1) ... build 03-Oct-2018 12:00:23 Setting up libhttp-negotiate-perl (6.00-2) ... build 03-Oct-2018 12:00:23 Setting up libnet-ssleay-perl (1.72-1build1) ... build 03-Oct-2018 12:00:23 Setting up libio-socket-ssl-perl (2.024-1) ... build 03-Oct-2018 12:00:23 Setting up libnet-http-perl (6.09-1) ... build 03-Oct-2018 12:00:23 Setting up libwww-robotrules-perl (6.01-1) ... build 03-Oct-2018 12:00:23 Setting up python-six (1.10.0-3) ... build 03-Oct-2018 12:00:24 Setting up python-pkg-resources (20.7.0-1) ... build 03-Oct-2018 12:00:25 Setting up python-scour (0.32-1) ... build 03-Oct-2018 12:00:26 Setting up curl (7.47.0-1ubuntu2.9) ... build 03-Oct-2018 12:00:27 Setting up libfakeroot:amd64 (1.20.2-1ubuntu1) ... build 03-Oct-2018 12:00:27 Setting up fakeroot (1.20.2-1ubuntu1) ... build 03-Oct-2018 12:00:27 update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode build 03-Oct-2018 12:00:27 Setting up libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 03-Oct-2018 12:00:27 Setting up libgfortran-5-dev:amd64 (5.4.0-6ubuntu1~16.04.10) ... build 03-Oct-2018 12:00:27 Setting up gfortran-5 (5.4.0-6ubuntu1~16.04.10) ... build 03-Oct-2018 12:00:27 Setting up gfortran (4:5.3.1-1ubuntu1) ... build 03-Oct-2018 12:00:28 update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode build 03-Oct-2018 12:00:28 update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode build 03-Oct-2018 12:00:28 Setting up libavahi-common-data:amd64 (0.6.32~rc+dfsg-1ubuntu2.2) ... build 03-Oct-2018 12:00:28 Setting up libavahi-common3:amd64 (0.6.32~rc+dfsg-1ubuntu2.2) ... build 03-Oct-2018 12:00:28 Setting up libavahi-client3:amd64 (0.6.32~rc+dfsg-1ubuntu2.2) ... build 03-Oct-2018 12:00:28 Setting up libcups2:amd64 (2.1.3-4ubuntu0.5) ... build 03-Oct-2018 12:00:28 Setting up libcupsfilters1:amd64 (1.8.3-2ubuntu3.4) ... build 03-Oct-2018 12:00:28 Setting up libcupsimage2:amd64 (2.1.3-4ubuntu0.5) ... build 03-Oct-2018 12:00:28 Setting up libijs-0.35:amd64 (0.35-12) ... build 03-Oct-2018 12:00:29 Setting up libjbig2dec0 (0.12+20150918-1ubuntu0.1) ... build 03-Oct-2018 12:00:29 Setting up libpaper1:amd64 (1.1.24+nmu4ubuntu1) ... build 03-Oct-2018 12:00:29 debconf: unable to initialize frontend: Dialog build 03-Oct-2018 12:00:29 debconf: (TERM is not set, so the dialog frontend is not usable.) build 03-Oct-2018 12:00:29 debconf: falling back to frontend: Readline build 03-Oct-2018 12:00:29 build 03-Oct-2018 12:00:29 Creating config file /etc/papersize with new version build 03-Oct-2018 12:00:29 Setting up libgs9-common (9.25~dfsg+1-0ubuntu0.16.04.1) ... build 03-Oct-2018 12:00:29 update-alternatives: using /usr/share/ghostscript/9.25 to provide /usr/share/ghostscript/current (ghostscript-current) in auto mode build 03-Oct-2018 12:00:29 Setting up libgs9:amd64 (9.25~dfsg+1-0ubuntu0.16.04.1) ... build 03-Oct-2018 12:00:29 Setting up gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2ubuntu1) ... build 03-Oct-2018 12:00:30 Setting up ghostscript (9.25~dfsg+1-0ubuntu0.16.04.1) ... build 03-Oct-2018 12:00:30 Setting up gir1.2-freedesktop:amd64 (1.46.0-3ubuntu1) ... build 03-Oct-2018 12:00:30 Setting up libgdk-pixbuf2.0-common (2.32.2-1ubuntu1.5) ... build 03-Oct-2018 12:00:30 Setting up libgdk-pixbuf2.0-0:amd64 (2.32.2-1ubuntu1.5) ... build 03-Oct-2018 12:00:30 Setting up gir1.2-gdkpixbuf-2.0:amd64 (2.32.2-1ubuntu1.5) ... build 03-Oct-2018 12:00:30 Setting up libpixman-1-0:amd64 (0.33.6-1) ... build 03-Oct-2018 12:00:30 Setting up libxcb-render0:amd64 (1.11.1-1ubuntu1) ... build 03-Oct-2018 12:00:30 Setting up libxcb-shm0:amd64 (1.11.1-1ubuntu1) ... build 03-Oct-2018 12:00:31 Setting up libcairo2:amd64 (1.14.6-1) ... build 03-Oct-2018 12:00:31 Setting up libthai-data (0.1.24-2) ... build 03-Oct-2018 12:00:32 Setting up libdatrie1:amd64 (0.2.10-2) ... build 03-Oct-2018 12:00:32 Setting up libthai0:amd64 (0.1.24-2) ... build 03-Oct-2018 12:00:32 Setting up libpango-1.0-0:amd64 (1.38.1-1) ... build 03-Oct-2018 12:00:32 Setting up libgraphite2-3:amd64 (1.3.10-0ubuntu0.16.04.1) ... build 03-Oct-2018 12:00:32 Setting up libharfbuzz0b:amd64 (1.0.1-1ubuntu0.1) ... build 03-Oct-2018 12:00:32 Setting up libpangoft2-1.0-0:amd64 (1.38.1-1) ... build 03-Oct-2018 12:00:32 Setting up libpangocairo-1.0-0:amd64 (1.38.1-1) ... build 03-Oct-2018 12:00:33 Setting up librsvg2-2:amd64 (2.40.13-3) ... build 03-Oct-2018 12:00:33 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auto mode build 03-Oct-2018 12:00:35 Setting up libblas-dev (3.6.0-2ubuntu2) ... build 03-Oct-2018 12:00:35 update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode build 03-Oct-2018 12:00:35 Setting up libbz2-dev:amd64 (1.0.6-8) ... build 03-Oct-2018 12:00:35 Setting up libcairo-gobject2:amd64 (1.14.6-1) ... build 03-Oct-2018 12:00:35 Setting up libcairo-script-interpreter2:amd64 (1.14.6-1) ... build 03-Oct-2018 12:00:35 Setting up libexpat1-dev:amd64 (2.1.0-7ubuntu0.16.04.3) ... build 03-Oct-2018 12:00:35 Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4.1) ... build 03-Oct-2018 12:00:35 Setting up libpng12-dev:amd64 (1.2.54-1ubuntu1.1) ... build 03-Oct-2018 12:00:35 Setting up libfreetype6-dev:amd64 (2.6.1-0.1ubuntu2.3) ... build 03-Oct-2018 12:00:36 Setting up pkg-config (0.29.1-0ubuntu1) ... build 03-Oct-2018 12:00:36 Setting up libfontconfig1-dev:amd64 (2.11.94-0ubuntu1.1) ... build 03-Oct-2018 12:00:36 Setting up xorg-sgml-doctools (1:1.11-1) ... build 03-Oct-2018 12:00:37 Setting up x11proto-core-dev (7.0.31-1~ubuntu16.04.2) ... build 03-Oct-2018 12:00:37 Setting up libxau-dev:amd64 (1:1.0.8-1) ... build 03-Oct-2018 12:00:37 Setting up libxdmcp-dev:amd64 (1:1.1.2-1.1) ... build 03-Oct-2018 12:00:37 Setting up x11proto-input-dev (2.3.1-1) ... build 03-Oct-2018 12:00:38 Setting up x11proto-kb-dev (1.0.7-0ubuntu1) ... build 03-Oct-2018 12:00:38 Setting up xtrans-dev (1.3.5-1) ... build 03-Oct-2018 12:00:38 Setting up libpthread-stubs0-dev:amd64 (0.3-4) ... build 03-Oct-2018 12:00:38 Setting up libxcb1-dev:amd64 (1.11.1-1ubuntu1) ... build 03-Oct-2018 12:00:38 Setting up libx11-dev:amd64 (2:1.6.3-1ubuntu2.1) ... build 03-Oct-2018 12:00:38 Setting up x11proto-render-dev (2:0.11.1-2) ... build 03-Oct-2018 12:00:38 Setting up libxrender-dev:amd64 (1:0.9.9-0ubuntu1) ... build 03-Oct-2018 12:00:38 Setting up x11proto-xext-dev (7.3.0-1) ... build 03-Oct-2018 12:00:38 Setting up libxext-dev:amd64 (2:1.3.3-1) ... build 03-Oct-2018 12:00:39 Setting up libice-dev:amd64 (2:1.0.9-1) ... build 03-Oct-2018 12:00:39 Setting up libsm-dev:amd64 (2:1.2.2-1) ... build 03-Oct-2018 12:00:39 Setting up libpixman-1-dev (0.33.6-1) ... build 03-Oct-2018 12:00:39 Setting up libxcb-render0-dev:amd64 (1.11.1-1ubuntu1) ... build 03-Oct-2018 12:00:39 Setting up libxcb-shm0-dev:amd64 (1.11.1-1ubuntu1) ... build 03-Oct-2018 12:00:39 Setting up libglib2.0-bin (2.48.2-0ubuntu4.1) ... build 03-Oct-2018 12:00:39 Setting up libpcre16-3:amd64 (2:8.38-3.1) ... build 03-Oct-2018 12:00:40 Setting up libpcre32-3:amd64 (2:8.38-3.1) ... build 03-Oct-2018 12:00:40 Setting up libpcre3-dev:amd64 (2:8.38-3.1) ... build 03-Oct-2018 12:00:40 Setting up libglib2.0-dev (2.48.2-0ubuntu4.1) ... build 03-Oct-2018 12:00:41 Setting up libcairo2-dev (1.14.6-1) ... build 03-Oct-2018 12:00:41 Setting up libcdt5 (2.38.0-12ubuntu2.1) ... build 03-Oct-2018 12:00:41 Setting up libcgraph6 (2.38.0-12ubuntu2.1) ... build 03-Oct-2018 12:00:41 Setting up libcurl3:amd64 (7.47.0-1ubuntu2.9) ... build 03-Oct-2018 12:00:41 Setting up libcurl4-openssl-dev:amd64 (7.47.0-1ubuntu2.9) ... build 03-Oct-2018 12:00:41 Setting up libdjvulibre-text (3.5.27.1-5) ... build 03-Oct-2018 12:00:42 Setting up libdjvulibre21:amd64 (3.5.27.1-5) ... build 03-Oct-2018 12:00:42 Setting up libjpeg-turbo8-dev:amd64 (1.4.2-0ubuntu3.1) ... build 03-Oct-2018 12:00:42 Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... build 03-Oct-2018 12:00:42 Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... build 03-Oct-2018 12:00:42 Setting up libdjvulibre-dev:amd64 (3.5.27.1-5) ... build 03-Oct-2018 12:00:42 Setting up libdrm-amdgpu1:amd64 (2.4.91-2~16.04.1) ... build 03-Oct-2018 12:00:42 Setting up libpciaccess0:amd64 (0.13.4-1) ... build 03-Oct-2018 12:00:42 Setting up libdrm-intel1:amd64 (2.4.91-2~16.04.1) ... build 03-Oct-2018 12:00:42 Setting up libdrm-radeon1:amd64 (2.4.91-2~16.04.1) ... build 03-Oct-2018 12:00:43 Setting up libdrm-nouveau2:amd64 (2.4.91-2~16.04.1) ... build 03-Oct-2018 12:00:43 Setting up libdrm-dev:amd64 (2.4.91-2~16.04.1) ... build 03-Oct-2018 12:00:43 Setting up libjs-jquery (1.11.3+dfsg-4) ... build 03-Oct-2018 12:00:43 Setting up libexif-dev (0.6.21-2) ... build 03-Oct-2018 12:00:43 Setting up libipc-system-simple-perl (1.25-3) ... build 03-Oct-2018 12:00:43 Setting up libfile-basedir-perl (0.07-1) ... build 03-Oct-2018 12:00:43 Setting up libfile-desktopentry-perl (0.22-1) ... build 03-Oct-2018 12:00:44 Setting up libfile-fcntllock-perl (0.22-3) ... build 03-Oct-2018 12:00:44 Setting up libfile-mimeinfo-perl (0.27-1) ... build 03-Oct-2018 12:00:44 Setting up libfont-afm-perl (1.20-1) ... build 03-Oct-2018 12:00:44 Setting up libfontenc1:amd64 (1:1.1.3-1) ... build 03-Oct-2018 12:00:44 Setting up libvpx3:amd64 (1.5.0-2ubuntu1) ... build 03-Oct-2018 12:00:44 Setting up libxpm4:amd64 (1:3.5.11-1ubuntu0.16.04.1) ... build 03-Oct-2018 12:00:44 Setting up libgd3:amd64 (2.1.1-4ubuntu0.16.04.10) ... build 03-Oct-2018 12:00:44 Setting up libgdk-pixbuf2.0-dev (2.32.2-1ubuntu1.5) ... build 03-Oct-2018 12:00:45 Setting up libgettextpo0:amd64 (0.19.7-2ubuntu3) ... build 03-Oct-2018 12:00:45 Setting up libgettextpo-dev:amd64 (0.19.7-2ubuntu3) ... build 03-Oct-2018 12:00:45 Setting up libglapi-mesa:amd64 (18.0.5-0ubuntu0~16.04.1) ... build 03-Oct-2018 12:00:45 Setting up libllvm6.0:amd64 (1:6.0-1ubuntu2~16.04.1) ... build 03-Oct-2018 12:00:45 Setting up libsensors4:amd64 (1:3.4.0-2) ... build 03-Oct-2018 12:00:46 Setting up libgl1-mesa-dri:amd64 (18.0.5-0ubuntu0~16.04.1) ... build 03-Oct-2018 12:00:46 Setting up libx11-xcb1:amd64 (2:1.6.3-1ubuntu2.1) ... build 03-Oct-2018 12:00:46 Setting up libxcb-dri2-0:amd64 (1.11.1-1ubuntu1) ... build 03-Oct-2018 12:00:46 Setting up libxcb-dri3-0:amd64 (1.11.1-1ubuntu1) ... build 03-Oct-2018 12:00:46 Setting up libxcb-glx0:amd64 (1.11.1-1ubuntu1) ... build 03-Oct-2018 12:00:47 Setting up libxcb-present0:amd64 (1.11.1-1ubuntu1) ... build 03-Oct-2018 12:00:47 Setting up libxcb-sync1:amd64 (1.11.1-1ubuntu1) ... build 03-Oct-2018 12:00:47 Setting up libgl1-mesa-glx:amd64 (18.0.5-0ubuntu0~16.04.1) ... build 03-Oct-2018 12:00:47 update-alternatives: using /usr/lib/x86_64-linux-gnu/mesa/ld.so.conf to provide /etc/ld.so.conf.d/x86_64-linux-gnu_GL.conf (x86_64-linux-gnu_gl_conf) in auto mode build 03-Oct-2018 12:00:47 Setting up libglu1-mesa:amd64 (9.0.0-2.1) ... build 03-Oct-2018 12:00:47 Setting up mesa-common-dev:amd64 (18.0.5-0ubuntu0~16.04.1) ... build 03-Oct-2018 12:00:47 Setting up libx11-xcb-dev:amd64 (2:1.6.3-1ubuntu2.1) ... build 03-Oct-2018 12:00:47 Setting up libxcb-dri3-dev:amd64 (1.11.1-1ubuntu1) ... build 03-Oct-2018 12:00:48 Setting up libxcb-randr0:amd64 (1.11.1-1ubuntu1) ... build 03-Oct-2018 12:00:48 Setting up libxcb-randr0-dev:amd64 (1.11.1-1ubuntu1) ... build 03-Oct-2018 12:00:48 Setting up libxcb-xfixes0:amd64 (1.11.1-1ubuntu1) ... build 03-Oct-2018 12:00:48 Setting up libxcb-shape0:amd64 (1.11.1-1ubuntu1) ... build 03-Oct-2018 12:00:48 Setting up libxcb-shape0-dev:amd64 (1.11.1-1ubuntu1) ... build 03-Oct-2018 12:00:48 Setting up libxcb-xfixes0-dev:amd64 (1.11.1-1ubuntu1) ... build 03-Oct-2018 12:00:48 Setting up libxcb-sync-dev:amd64 (1.11.1-1ubuntu1) ... build 03-Oct-2018 12:00:48 Setting up libxcb-present-dev:amd64 (1.11.1-1ubuntu1) ... build 03-Oct-2018 12:00:49 Setting up libxshmfence-dev:amd64 (1.2-1) ... build 03-Oct-2018 12:00:49 Setting up libxcb-dri2-0-dev:amd64 (1.11.1-1ubuntu1) ... build 03-Oct-2018 12:00:49 Setting up libxcb-glx0-dev:amd64 (1.11.1-1ubuntu1) ... build 03-Oct-2018 12:00:49 Setting up x11proto-fixes-dev (1:5.0-2ubuntu2) ... build 03-Oct-2018 12:00:49 Setting up libxfixes-dev:amd64 (1:5.0.1-2) ... build 03-Oct-2018 12:00:49 Setting up x11proto-damage-dev (1:1.2.1-2) ... build 03-Oct-2018 12:00:49 Setting up libxdamage-dev:amd64 (1:1.1.4-2) ... build 03-Oct-2018 12:00:50 Setting up x11proto-xf86vidmode-dev (2.3.1-2) ... build 03-Oct-2018 12:00:50 Setting up libxxf86vm-dev:amd64 (1:1.1.4-1) ... build 03-Oct-2018 12:00:50 Setting up x11proto-dri2-dev (2.8-2) ... build 03-Oct-2018 12:00:50 Setting up x11proto-gl-dev (1.4.17-1) ... build 03-Oct-2018 12:00:50 Setting up libgl1-mesa-dev:amd64 (18.0.5-0ubuntu0~16.04.1) ... build 03-Oct-2018 12:00:50 Setting up libglu1-mesa-dev:amd64 (9.0.0-2.1) ... build 03-Oct-2018 12:00:50 Setting up libpathplan4 (2.38.0-12ubuntu2.1) ... build 03-Oct-2018 12:00:51 Setting up libgvc6 (2.38.0-12ubuntu2.1) ... build 03-Oct-2018 12:00:51 Setting up libgvpr2 (2.38.0-12ubuntu2.1) ... build 03-Oct-2018 12:00:51 Setting up libxdot4 (2.38.0-12ubuntu2.1) ... build 03-Oct-2018 12:00:51 Setting up libgtk2.0-common (2.24.30-1ubuntu1.16.04.2) ... build 03-Oct-2018 12:00:51 Setting up libxcursor1:amd64 (1:1.1.14-1ubuntu0.16.04.2) ... build 03-Oct-2018 12:00:52 Setting up libxi6:amd64 (2:1.7.6-1) ... build 03-Oct-2018 12:00:52 Setting up libxrandr2:amd64 (2:1.5.0-1) ... build 03-Oct-2018 12:00:52 Setting up libgtk2.0-0:amd64 (2.24.30-1ubuntu1.16.04.2) ... build 03-Oct-2018 12:00:52 Setting up libgvc6-plugins-gtk (2.38.0-12ubuntu2.1) ... build 03-Oct-2018 12:00:52 Setting up libltdl-dev:amd64 (2.4.6-0.1) ... build 03-Oct-2018 12:00:52 Setting up libgraphviz-dev (2.38.0-12ubuntu2.1) ... build 03-Oct-2018 12:00:52 Setting up libgtk2.0-bin (2.24.30-1ubuntu1.16.04.2) ... build 03-Oct-2018 12:00:53 Setting up libhtml-form-perl (6.03-1) ... build 03-Oct-2018 12:00:53 Setting up libhtml-format-perl (2.11-2) ... build 03-Oct-2018 12:00:53 Setting up libhttp-daemon-perl (6.01-1) ... build 03-Oct-2018 12:00:53 Setting up libicu-dev:amd64 (55.1-7ubuntu0.4) ... build 03-Oct-2018 12:00:53 Setting up libjasper1:amd64 (1.900.1-debian1-2.4ubuntu1.2) ... build 03-Oct-2018 12:00:53 Setting up libjasper-dev (1.900.1-debian1-2.4ubuntu1.2) ... build 03-Oct-2018 12:00:53 Setting up liblapack3 (3.6.0-2ubuntu2) ... build 03-Oct-2018 12:00:53 update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode build 03-Oct-2018 12:00:53 Setting up liblapack-dev (3.6.0-2ubuntu2) ... build 03-Oct-2018 12:00:53 update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode build 03-Oct-2018 12:00:53 Setting up liblcms2-dev:amd64 (2.6-3ubuntu2.1) ... build 03-Oct-2018 12:00:54 Setting up liblqr-1-0-dev (0.4.2-2) ... build 03-Oct-2018 12:00:54 Setting up libmagickwand-6-headers (8:6.8.9.9-7ubuntu5.12) ... build 03-Oct-2018 12:00:54 Setting up libmagick++-6-headers (8:6.8.9.9-7ubuntu5.12) ... build 03-Oct-2018 12:00:54 Setting up libmagick++-6.q16-5v5:amd64 (8:6.8.9.9-7ubuntu5.12) ... build 03-Oct-2018 12:00:54 Setting up libwmf0.2-7:amd64 (0.2.8.4-10.5ubuntu1) ... build 03-Oct-2018 12:00:55 Setting up libmagickcore-6.q16-2-extra:amd64 (8:6.8.9.9-7ubuntu5.12) ... build 03-Oct-2018 12:00:55 Setting up librsvg2-common:amd64 (2.40.13-3) ... build 03-Oct-2018 12:00:55 Setting up librsvg2-dev:amd64 (2.40.13-3) ... build 03-Oct-2018 12:00:55 Setting up libjbig-dev:amd64 (2.1-3.1) ... build 03-Oct-2018 12:00:56 Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... build 03-Oct-2018 12:00:56 Setting up libtiffxx5:amd64 (4.0.6-1ubuntu0.4) ... build 03-Oct-2018 12:00:56 Setting up libtiff5-dev:amd64 (4.0.6-1ubuntu0.4) ... build 03-Oct-2018 12:00:56 Setting up libwmf-dev (0.2.8.4-10.5ubuntu1) ... build 03-Oct-2018 12:00:56 Setting up libxml2-dev:amd64 (2.9.3+dfsg1-1ubuntu0.6) ... build 03-Oct-2018 12:00:56 Setting up libxt6:amd64 (1:1.1.5-0ubuntu1) ... build 03-Oct-2018 12:00:57 Setting up libxt-dev:amd64 (1:1.1.5-0ubuntu1) ... build 03-Oct-2018 12:00:57 Setting up libmagickcore-6.q16-dev:amd64 (8:6.8.9.9-7ubuntu5.12) ... build 03-Oct-2018 12:00:57 Setting up libmagickwand-6.q16-dev:amd64 (8:6.8.9.9-7ubuntu5.12) ... build 03-Oct-2018 12:00:58 Setting up libmagick++-6.q16-dev:amd64 (8:6.8.9.9-7ubuntu5.12) ... build 03-Oct-2018 12:00:58 Setting up libmagick++-dev (8:6.8.9.9-7ubuntu5.12) ... build 03-Oct-2018 12:00:58 Setting up libsys-hostname-long-perl (1.5-1) ... build 03-Oct-2018 12:00:58 Setting up libmail-sendmail-perl (0.79.16-1) ... build 03-Oct-2018 12:00:58 Setting up libnet-smtp-ssl-perl (1.03-1) ... build 03-Oct-2018 12:00:58 Setting up libmailtools-perl (2.13-1) ... build 03-Oct-2018 12:00:58 Setting up libmariadb2:amd64 (2.0.0-1) ... build 03-Oct-2018 12:00:59 Setting up libmariadb-client-lgpl-dev (2.0.0-1) ... build 03-Oct-2018 12:00:59 Setting up libtinfo-dev:amd64 (6.0+20160213-1ubuntu1) ... build 03-Oct-2018 12:00:59 Setting up libncurses5-dev:amd64 (6.0+20160213-1ubuntu1) ... build 03-Oct-2018 12:00:59 Setting up libpaper-utils (1.1.24+nmu4ubuntu1) ... build 03-Oct-2018 12:00:59 Setting up libreadline6-dev:amd64 (6.3-8ubuntu2) ... build 03-Oct-2018 12:00:59 Setting up libreadline-dev:amd64 (6.3-8ubuntu2) ... build 03-Oct-2018 12:00:59 Setting up libssl-dev:amd64 (1.0.2g-1ubuntu4.13) ... build 03-Oct-2018 12:00:59 Setting up libssl-doc (1.0.2g-1ubuntu4.13) ... build 03-Oct-2018 12:01:00 Setting up libtcl8.6:amd64 (8.6.5+dfsg-2) ... build 03-Oct-2018 12:01:00 Setting up libtie-ixhash-perl (1.23-2) ... build 03-Oct-2018 12:01:00 Setting up libtk8.6:amd64 (8.6.5-1) ... build 03-Oct-2018 12:01:00 Setting up libtool (2.4.6-0.1) ... build 03-Oct-2018 12:01:00 Setting up libx11-doc (2:1.6.3-1ubuntu2.1) ... build 03-Oct-2018 12:01:00 Setting up libx11-protocol-perl (0.56-7) ... build 03-Oct-2018 12:01:00 Setting up libxmu6:amd64 (2:1.1.2-2) ... build 03-Oct-2018 12:01:00 Setting up libxaw7:amd64 (2:1.0.13-1) ... build 03-Oct-2018 12:01:00 Setting up libxml-xpathengine-perl (0.13-1) ... build 03-Oct-2018 12:01:01 Setting up manpages-dev (4.04-2) ... build 03-Oct-2018 12:01:01 Setting up zip (3.0-11) ... build 03-Oct-2018 12:01:01 Setting up unzip (6.0-20ubuntu1) ... build 03-Oct-2018 12:01:01 Setting up xdg-utils (1.1.1-1ubuntu1.16.04.3) ... build 03-Oct-2018 12:01:02 Setting up r-base-core (3.2.3-4) ... build 03-Oct-2018 12:01:02 debconf: unable to initialize frontend: Dialog build 03-Oct-2018 12:01:02 debconf: (TERM is not set, so the dialog frontend is not usable.) build 03-Oct-2018 12:01:02 debconf: falling back to frontend: Readline build 03-Oct-2018 12:01:02 build 03-Oct-2018 12:01:02 Creating config file /etc/R/Renviron with new version build 03-Oct-2018 12:01:03 Setting up r-cran-boot (1.3-17-1) ... build 03-Oct-2018 12:01:03 Setting up r-cran-cluster (2.0.3-1) ... build 03-Oct-2018 12:01:03 Setting up r-cran-foreign (0.8.66-1) ... build 03-Oct-2018 12:01:03 Setting up r-cran-mass (7.3-45-1) ... build 03-Oct-2018 12:01:03 Setting up r-cran-kernsmooth (2.23-15-1) ... build 03-Oct-2018 12:01:03 Setting up r-cran-lattice (0.20-33-1) ... build 03-Oct-2018 12:01:03 Setting up r-cran-nlme (3.1.124-1) ... build 03-Oct-2018 12:01:03 Setting up r-cran-matrix (1.2-3-1) ... build 03-Oct-2018 12:01:04 Setting up r-cran-mgcv (1.8-11-1) ... build 03-Oct-2018 12:01:04 Setting up r-cran-survival (2.38-3-1) ... build 03-Oct-2018 12:01:04 Setting up r-cran-rpart (4.1-10-1) ... build 03-Oct-2018 12:01:04 Setting up r-cran-class (7.3-14-1) ... build 03-Oct-2018 12:01:04 Setting up r-cran-nnet (7.3-12-1) ... build 03-Oct-2018 12:01:04 Setting up r-cran-spatial (7.3-11-1) ... build 03-Oct-2018 12:01:04 Setting up r-cran-codetools (0.2-14-1) ... build 03-Oct-2018 12:01:04 Setting up r-recommended (3.2.3-4) ... build 03-Oct-2018 12:01:05 Setting up r-base (3.2.3-4) ... build 03-Oct-2018 12:01:05 Setting up r-cran-rgl (0.95.1441-1) ... build 03-Oct-2018 12:01:05 Setting up r-doc-html (3.2.3-4) ... build 03-Oct-2018 12:01:05 Setting up rename (0.20-4) ... build 03-Oct-2018 12:01:05 update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode build 03-Oct-2018 12:01:05 Setting up x11-utils (7.7+3) ... build 03-Oct-2018 12:01:06 Setting up x11-xserver-utils (7.7+7) ... build 03-Oct-2018 12:01:07 Setting up libauthen-sasl-perl (2.1600-1) ... build 03-Oct-2018 12:01:07 Setting up r-base-html (3.2.3-4) ... build 03-Oct-2018 12:01:07 Setting up libwww-perl (6.15-1) ... build 03-Oct-2018 12:01:07 Setting up libxml-parser-perl (2.44-1build1) ... build 03-Oct-2018 12:01:07 Setting up intltool (0.51.0-2ubuntu1.16.04.1) ... build 03-Oct-2018 12:01:07 Setting up libxml-twig-perl (1:3.48-1) ... build 03-Oct-2018 12:01:07 Setting up libnet-dbus-perl (1.1.0-3build1) ... build 03-Oct-2018 12:01:07 Setting up dh-strip-nondeterminism (0.015-1) ... build 03-Oct-2018 12:01:08 Setting up debhelper (9.20160115ubuntu3) ... build 03-Oct-2018 12:01:08 Setting up liblwp-protocol-https-perl (6.06-2) ... build 03-Oct-2018 12:01:08 Setting up dh-translations (129) ... build 03-Oct-2018 12:01:08 Setting up cdbs (0.4.130ubuntu2) ... build 03-Oct-2018 12:01:08 Setting up r-base-dev (3.2.3-4) ... build 03-Oct-2018 12:01:08 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 12:01:08 Processing triggers for systemd (229-4ubuntu21.4) ... build 03-Oct-2018 12:01:09 Processing triggers for sgml-base (1.26+nmu4ubuntu1) ... build 03-Oct-2018 12:01:09 Processing triggers for libgdk-pixbuf2.0-0:amd64 (2.32.2-1ubuntu1.5) ... build 03-Oct-2018 12:01:28 Removing intermediate container 51bf738112f5 build 03-Oct-2018 12:01:28 ---> dc638d3a13a4 build 03-Oct-2018 12:01:28 Step 6/15 : RUN echo 'install.packages("rgl", repos="http://cran.us.r-project.org", dependencies=TRUE)' > /tmp/packages.R && Rscript /tmp/packages.R build 03-Oct-2018 12:01:29 ---> Running in 5122bf7048a1 build 03-Oct-2018 12:01:29 Installing package into '/usr/local/lib/R/site-library' build 03-Oct-2018 12:01:29 (as 'lib' is unspecified) build 03-Oct-2018 12:01:31 also installing the dependencies 'colorspace', 'assertthat', 'fansi', 'utf8', 'ps', 'labeling', 'munsell', 'RColorBrewer', 'cli', 'pillar', 'processx', 'glue', 'stringi', 'BH', 'gtable', 'plyr', 'reshape2', 'scales', 'tibble', 'viridisLite', 'withr', 'callr', 'backports', 'xfun', 'yaml', 'digest', 'Rcpp', 'evaluate', 'highr', 'markdown', 'stringr', 'httpuv', 'mime', 'xtable', 'R6', 'sourcetools', 'later', 'promises', 'crayon', 'rlang', 'lazyeval', 'ggplot2', 'miniUI', 'base64enc', 'webshot', 'rprojroot', 'tinytex', 'curl', 'htmlwidgets', 'htmltools', 'knitr', 'jsonlite', 'shiny', 'magrittr', 'crosstalk', 'manipulateWidget', 'rmarkdown', 'deldir', 'orientlib', 'misc3d', 'rstudioapi', 'magick' build 03-Oct-2018 12:01:31 build 03-Oct-2018 12:01:31 trying URL 'http://cran.us.r-project.org/src/contrib/colorspace_1.3-2.tar.gz' build 03-Oct-2018 12:01:31 Content type 'application/x-gzip' length 293433 bytes (286 KB) build 03-Oct-2018 12:01:31 ================================================== build 03-Oct-2018 12:01:31 downloaded 286 KB build 03-Oct-2018 12:01:31 build 03-Oct-2018 12:01:31 trying URL 'http://cran.us.r-project.org/src/contrib/assertthat_0.2.0.tar.gz' build 03-Oct-2018 12:01:32 Content type 'application/x-gzip' length 11612 bytes (11 KB) build 03-Oct-2018 12:01:32 ================================================== build 03-Oct-2018 12:01:32 downloaded 11 KB build 03-Oct-2018 12:01:32 build 03-Oct-2018 12:01:32 trying URL 'http://cran.us.r-project.org/src/contrib/fansi_0.3.0.tar.gz' build 03-Oct-2018 12:01:32 Content type 'application/x-gzip' length 243661 bytes (237 KB) build 03-Oct-2018 12:01:32 ================================================== build 03-Oct-2018 12:01:32 downloaded 237 KB build 03-Oct-2018 12:01:32 build 03-Oct-2018 12:01:32 trying URL 'http://cran.us.r-project.org/src/contrib/utf8_1.1.4.tar.gz' build 03-Oct-2018 12:01:32 Content type 'application/x-gzip' length 218882 bytes (213 KB) build 03-Oct-2018 12:01:33 ================================================== build 03-Oct-2018 12:01:33 downloaded 213 KB build 03-Oct-2018 12:01:33 build 03-Oct-2018 12:01:33 trying URL 'http://cran.us.r-project.org/src/contrib/ps_1.1.0.tar.gz' build 03-Oct-2018 12:01:33 Content type 'application/x-gzip' length 242390 bytes (236 KB) build 03-Oct-2018 12:01:33 ================================================== build 03-Oct-2018 12:01:33 downloaded 236 KB build 03-Oct-2018 12:01:33 build 03-Oct-2018 12:01:33 trying URL 'http://cran.us.r-project.org/src/contrib/labeling_0.3.tar.gz' build 03-Oct-2018 12:01:34 Content type 'application/x-gzip' length 10722 bytes (10 KB) build 03-Oct-2018 12:01:34 ================================================== build 03-Oct-2018 12:01:34 downloaded 10 KB build 03-Oct-2018 12:01:34 build 03-Oct-2018 12:01:34 trying URL 'http://cran.us.r-project.org/src/contrib/munsell_0.5.0.tar.gz' build 03-Oct-2018 12:01:34 Content type 'application/x-gzip' length 182653 bytes (178 KB) build 03-Oct-2018 12:01:34 ================================================== build 03-Oct-2018 12:01:34 downloaded 178 KB build 03-Oct-2018 12:01:34 build 03-Oct-2018 12:01:34 trying URL 'http://cran.us.r-project.org/src/contrib/RColorBrewer_1.1-2.tar.gz' build 03-Oct-2018 12:01:34 Content type 'application/x-gzip' length 11532 bytes (11 KB) build 03-Oct-2018 12:01:34 ================================================== build 03-Oct-2018 12:01:34 downloaded 11 KB build 03-Oct-2018 12:01:34 build 03-Oct-2018 12:01:34 trying URL 'http://cran.us.r-project.org/src/contrib/cli_1.0.1.tar.gz' build 03-Oct-2018 12:01:35 Content type 'application/x-gzip' length 2186755 bytes (2.1 MB) build 03-Oct-2018 12:01:35 ================================================== build 03-Oct-2018 12:01:35 downloaded 2.1 MB build 03-Oct-2018 12:01:35 build 03-Oct-2018 12:01:35 trying URL 'http://cran.us.r-project.org/src/contrib/pillar_1.3.0.tar.gz' build 03-Oct-2018 12:01:36 Content type 'application/x-gzip' length 103104 bytes (100 KB) build 03-Oct-2018 12:01:36 ================================================== build 03-Oct-2018 12:01:36 downloaded 100 KB build 03-Oct-2018 12:01:36 build 03-Oct-2018 12:01:36 trying URL 'http://cran.us.r-project.org/src/contrib/processx_3.2.0.tar.gz' build 03-Oct-2018 12:01:36 Content type 'application/x-gzip' length 97959 bytes (95 KB) build 03-Oct-2018 12:01:37 ================================================== build 03-Oct-2018 12:01:37 downloaded 95 KB build 03-Oct-2018 12:01:37 build 03-Oct-2018 12:01:37 trying URL 'http://cran.us.r-project.org/src/contrib/glue_1.3.0.tar.gz' build 03-Oct-2018 12:01:37 Content type 'application/x-gzip' length 56368 bytes (55 KB) build 03-Oct-2018 12:01:37 ================================================== build 03-Oct-2018 12:01:37 downloaded 55 KB build 03-Oct-2018 12:01:37 build 03-Oct-2018 12:01:37 trying URL 'http://cran.us.r-project.org/src/contrib/stringi_1.2.4.tar.gz' build 03-Oct-2018 12:01:37 Content type 'application/x-gzip' length 17916239 bytes (17.1 MB) build 03-Oct-2018 12:01:39 ================================================== build 03-Oct-2018 12:01:39 downloaded 17.1 MB build 03-Oct-2018 12:01:39 build 03-Oct-2018 12:01:39 trying URL 'http://cran.us.r-project.org/src/contrib/BH_1.66.0-1.tar.gz' build 03-Oct-2018 12:01:39 Content type 'application/x-gzip' length 11583445 bytes (11.0 MB) build 03-Oct-2018 12:01:41 ================================================== build 03-Oct-2018 12:01:41 downloaded 11.0 MB build 03-Oct-2018 12:01:41 build 03-Oct-2018 12:01:41 trying URL 'http://cran.us.r-project.org/src/contrib/gtable_0.2.0.tar.gz' build 03-Oct-2018 12:01:41 Content type 'application/x-gzip' length 24157 bytes (23 KB) build 03-Oct-2018 12:01:41 ================================================== build 03-Oct-2018 12:01:41 downloaded 23 KB build 03-Oct-2018 12:01:41 build 03-Oct-2018 12:01:41 trying URL 'http://cran.us.r-project.org/src/contrib/plyr_1.8.4.tar.gz' build 03-Oct-2018 12:01:41 Content type 'application/x-gzip' length 392451 bytes (383 KB) build 03-Oct-2018 12:01:42 ================================================== build 03-Oct-2018 12:01:42 downloaded 383 KB build 03-Oct-2018 12:01:42 build 03-Oct-2018 12:01:42 trying URL 'http://cran.us.r-project.org/src/contrib/reshape2_1.4.3.tar.gz' build 03-Oct-2018 12:01:42 Content type 'application/x-gzip' length 36405 bytes (35 KB) build 03-Oct-2018 12:01:42 ================================================== build 03-Oct-2018 12:01:42 downloaded 35 KB build 03-Oct-2018 12:01:42 build 03-Oct-2018 12:01:42 trying URL 'http://cran.us.r-project.org/src/contrib/scales_1.0.0.tar.gz' build 03-Oct-2018 12:01:43 Content type 'application/x-gzip' length 299262 bytes (292 KB) build 03-Oct-2018 12:01:43 ================================================== build 03-Oct-2018 12:01:43 downloaded 292 KB build 03-Oct-2018 12:01:43 build 03-Oct-2018 12:01:43 trying URL 'http://cran.us.r-project.org/src/contrib/tibble_1.4.2.tar.gz' build 03-Oct-2018 12:01:43 Content type 'application/x-gzip' length 109808 bytes (107 KB) build 03-Oct-2018 12:01:43 ================================================== build 03-Oct-2018 12:01:43 downloaded 107 KB build 03-Oct-2018 12:01:43 build 03-Oct-2018 12:01:43 trying URL 'http://cran.us.r-project.org/src/contrib/viridisLite_0.3.0.tar.gz' build 03-Oct-2018 12:01:44 Content type 'application/x-gzip' length 44019 bytes (42 KB) build 03-Oct-2018 12:01:44 ================================================== build 03-Oct-2018 12:01:44 downloaded 42 KB build 03-Oct-2018 12:01:44 build 03-Oct-2018 12:01:44 trying URL 'http://cran.us.r-project.org/src/contrib/withr_2.1.2.tar.gz' build 03-Oct-2018 12:01:44 Content type 'application/x-gzip' length 53578 bytes (52 KB) build 03-Oct-2018 12:01:44 ================================================== build 03-Oct-2018 12:01:44 downloaded 52 KB build 03-Oct-2018 12:01:44 build 03-Oct-2018 12:01:44 trying URL 'http://cran.us.r-project.org/src/contrib/callr_3.0.0.tar.gz' build 03-Oct-2018 12:01:44 Content type 'application/x-gzip' length 36365 bytes (35 KB) build 03-Oct-2018 12:01:44 ================================================== build 03-Oct-2018 12:01:44 downloaded 35 KB build 03-Oct-2018 12:01:44 build 03-Oct-2018 12:01:44 trying URL 'http://cran.us.r-project.org/src/contrib/backports_1.1.2.tar.gz' build 03-Oct-2018 12:01:45 Content type 'application/x-gzip' length 10900 bytes (10 KB) build 03-Oct-2018 12:01:45 ================================================== build 03-Oct-2018 12:01:45 downloaded 10 KB build 03-Oct-2018 12:01:45 build 03-Oct-2018 12:01:45 trying URL 'http://cran.us.r-project.org/src/contrib/xfun_0.3.tar.gz' build 03-Oct-2018 12:01:45 Content type 'application/x-gzip' length 45051 bytes (43 KB) build 03-Oct-2018 12:01:45 ================================================== build 03-Oct-2018 12:01:45 downloaded 43 KB build 03-Oct-2018 12:01:45 build 03-Oct-2018 12:01:45 trying URL 'http://cran.us.r-project.org/src/contrib/yaml_2.2.0.tar.gz' build 03-Oct-2018 12:01:45 Content type 'application/x-gzip' length 89447 bytes (87 KB) build 03-Oct-2018 12:01:45 ================================================== build 03-Oct-2018 12:01:45 downloaded 87 KB build 03-Oct-2018 12:01:45 build 03-Oct-2018 12:01:45 trying URL 'http://cran.us.r-project.org/src/contrib/digest_0.6.17.tar.gz' build 03-Oct-2018 12:01:46 Content type 'application/x-gzip' length 124138 bytes (121 KB) build 03-Oct-2018 12:01:46 ================================================== build 03-Oct-2018 12:01:46 downloaded 121 KB build 03-Oct-2018 12:01:46 build 03-Oct-2018 12:01:46 trying URL 'http://cran.us.r-project.org/src/contrib/Rcpp_0.12.19.tar.gz' build 03-Oct-2018 12:01:46 Content type 'application/x-gzip' length 3646456 bytes (3.5 MB) build 03-Oct-2018 12:01:47 ================================================== build 03-Oct-2018 12:01:47 downloaded 3.5 MB build 03-Oct-2018 12:01:47 build 03-Oct-2018 12:01:47 trying URL 'http://cran.us.r-project.org/src/contrib/evaluate_0.11.tar.gz' build 03-Oct-2018 12:01:47 Content type 'application/x-gzip' length 22565 bytes (22 KB) build 03-Oct-2018 12:01:47 ================================================== build 03-Oct-2018 12:01:47 downloaded 22 KB build 03-Oct-2018 12:01:47 build 03-Oct-2018 12:01:47 trying URL 'http://cran.us.r-project.org/src/contrib/highr_0.7.tar.gz' build 03-Oct-2018 12:01:48 Content type 'application/x-gzip' length 17505 bytes (17 KB) build 03-Oct-2018 12:01:48 ================================================== build 03-Oct-2018 12:01:48 downloaded 17 KB build 03-Oct-2018 12:01:48 build 03-Oct-2018 12:01:48 trying URL 'http://cran.us.r-project.org/src/contrib/markdown_0.8.tar.gz' build 03-Oct-2018 12:01:48 Content type 'application/x-gzip' length 80583 bytes (78 KB) build 03-Oct-2018 12:01:48 ================================================== build 03-Oct-2018 12:01:48 downloaded 78 KB build 03-Oct-2018 12:01:48 build 03-Oct-2018 12:01:48 trying URL 'http://cran.us.r-project.org/src/contrib/stringr_1.3.1.tar.gz' build 03-Oct-2018 12:01:48 Content type 'application/x-gzip' length 119156 bytes (116 KB) build 03-Oct-2018 12:01:49 ================================================== build 03-Oct-2018 12:01:49 downloaded 116 KB build 03-Oct-2018 12:01:49 build 03-Oct-2018 12:01:49 trying URL 'http://cran.us.r-project.org/src/contrib/httpuv_1.4.5.tar.gz' build 03-Oct-2018 12:01:49 Content type 'application/x-gzip' length 1675895 bytes (1.6 MB) build 03-Oct-2018 12:01:50 ================================================== build 03-Oct-2018 12:01:50 downloaded 1.6 MB build 03-Oct-2018 12:01:50 build 03-Oct-2018 12:01:50 trying URL 'http://cran.us.r-project.org/src/contrib/mime_0.5.tar.gz' build 03-Oct-2018 12:01:50 Content type 'application/x-gzip' length 12634 bytes (12 KB) build 03-Oct-2018 12:01:50 ================================================== build 03-Oct-2018 12:01:50 downloaded 12 KB build 03-Oct-2018 12:01:50 build 03-Oct-2018 12:01:50 trying URL 'http://cran.us.r-project.org/src/contrib/xtable_1.8-3.tar.gz' build 03-Oct-2018 12:01:50 Content type 'application/x-gzip' length 610140 bytes (595 KB) build 03-Oct-2018 12:01:51 ================================================== build 03-Oct-2018 12:01:51 downloaded 595 KB build 03-Oct-2018 12:01:51 build 03-Oct-2018 12:01:51 trying URL 'http://cran.us.r-project.org/src/contrib/R6_2.2.2.tar.gz' build 03-Oct-2018 12:01:51 Content type 'application/x-gzip' length 322959 bytes (315 KB) build 03-Oct-2018 12:01:51 ================================================== build 03-Oct-2018 12:01:51 downloaded 315 KB build 03-Oct-2018 12:01:51 build 03-Oct-2018 12:01:51 trying URL 'http://cran.us.r-project.org/src/contrib/sourcetools_0.1.7.tar.gz' build 03-Oct-2018 12:01:51 Content type 'application/x-gzip' length 24155 bytes (23 KB) build 03-Oct-2018 12:01:51 ================================================== build 03-Oct-2018 12:01:51 downloaded 23 KB build 03-Oct-2018 12:01:51 build 03-Oct-2018 12:01:51 trying URL 'http://cran.us.r-project.org/src/contrib/later_0.7.5.tar.gz' build 03-Oct-2018 12:01:52 Content type 'application/x-gzip' length 38900 bytes (37 KB) build 03-Oct-2018 12:01:52 ================================================== build 03-Oct-2018 12:01:52 downloaded 37 KB build 03-Oct-2018 12:01:52 build 03-Oct-2018 12:01:52 trying URL 'http://cran.us.r-project.org/src/contrib/promises_1.0.1.tar.gz' build 03-Oct-2018 12:01:52 Content type 'application/x-gzip' length 106866 bytes (104 KB) build 03-Oct-2018 12:01:52 ================================================== build 03-Oct-2018 12:01:52 downloaded 104 KB build 03-Oct-2018 12:01:52 build 03-Oct-2018 12:01:52 trying URL 'http://cran.us.r-project.org/src/contrib/crayon_1.3.4.tar.gz' build 03-Oct-2018 12:01:52 Content type 'application/x-gzip' length 658694 bytes (643 KB) build 03-Oct-2018 12:01:53 ================================================== build 03-Oct-2018 12:01:53 downloaded 643 KB build 03-Oct-2018 12:01:53 build 03-Oct-2018 12:01:53 trying URL 'http://cran.us.r-project.org/src/contrib/rlang_0.2.2.tar.gz' build 03-Oct-2018 12:01:53 Content type 'application/x-gzip' length 325128 bytes (317 KB) build 03-Oct-2018 12:01:54 ================================================== build 03-Oct-2018 12:01:54 downloaded 317 KB build 03-Oct-2018 12:01:54 build 03-Oct-2018 12:01:54 trying URL 'http://cran.us.r-project.org/src/contrib/lazyeval_0.2.1.tar.gz' build 03-Oct-2018 12:01:54 Content type 'application/x-gzip' length 80150 bytes (78 KB) build 03-Oct-2018 12:01:54 ================================================== build 03-Oct-2018 12:01:54 downloaded 78 KB build 03-Oct-2018 12:01:54 build 03-Oct-2018 12:01:54 trying URL 'http://cran.us.r-project.org/src/contrib/ggplot2_3.0.0.tar.gz' build 03-Oct-2018 12:01:54 Content type 'application/x-gzip' length 2847050 bytes (2.7 MB) build 03-Oct-2018 12:01:55 ================================================== build 03-Oct-2018 12:01:55 downloaded 2.7 MB build 03-Oct-2018 12:01:55 build 03-Oct-2018 12:01:55 trying URL 'http://cran.us.r-project.org/src/contrib/miniUI_0.1.1.1.tar.gz' build 03-Oct-2018 12:01:55 Content type 'application/x-gzip' length 97958 bytes (95 KB) build 03-Oct-2018 12:01:56 ================================================== build 03-Oct-2018 12:01:56 downloaded 95 KB build 03-Oct-2018 12:01:56 build 03-Oct-2018 12:01:56 trying URL 'http://cran.us.r-project.org/src/contrib/base64enc_0.1-3.tar.gz' build 03-Oct-2018 12:01:56 Content type 'application/x-gzip' length 7833 bytes build 03-Oct-2018 12:01:56 ================================================== build 03-Oct-2018 12:01:56 downloaded 7833 bytes build 03-Oct-2018 12:01:56 build 03-Oct-2018 12:01:56 trying URL 'http://cran.us.r-project.org/src/contrib/webshot_0.5.1.tar.gz' build 03-Oct-2018 12:01:56 Content type 'application/x-gzip' length 156828 bytes (153 KB) build 03-Oct-2018 12:01:56 ================================================== build 03-Oct-2018 12:01:56 downloaded 153 KB build 03-Oct-2018 12:01:56 build 03-Oct-2018 12:01:56 trying URL 'http://cran.us.r-project.org/src/contrib/rprojroot_1.3-2.tar.gz' build 03-Oct-2018 12:01:56 Content type 'application/x-gzip' length 50414 bytes (49 KB) build 03-Oct-2018 12:01:57 ================================================== build 03-Oct-2018 12:01:57 downloaded 49 KB build 03-Oct-2018 12:01:57 build 03-Oct-2018 12:01:57 trying URL 'http://cran.us.r-project.org/src/contrib/tinytex_0.8.tar.gz' build 03-Oct-2018 12:01:57 Content type 'application/x-gzip' length 20873 bytes (20 KB) build 03-Oct-2018 12:01:57 ================================================== build 03-Oct-2018 12:01:57 downloaded 20 KB build 03-Oct-2018 12:01:57 build 03-Oct-2018 12:01:57 trying URL 'http://cran.us.r-project.org/src/contrib/curl_3.2.tar.gz' build 03-Oct-2018 12:01:57 Content type 'application/x-gzip' length 367047 bytes (358 KB) build 03-Oct-2018 12:01:58 ================================================== build 03-Oct-2018 12:01:58 downloaded 358 KB build 03-Oct-2018 12:01:58 build 03-Oct-2018 12:01:58 trying URL 'http://cran.us.r-project.org/src/contrib/htmlwidgets_1.3.tar.gz' build 03-Oct-2018 12:01:58 Content type 'application/x-gzip' length 866548 bytes (846 KB) build 03-Oct-2018 12:01:58 ================================================== build 03-Oct-2018 12:01:58 downloaded 846 KB build 03-Oct-2018 12:01:58 build 03-Oct-2018 12:01:58 trying URL 'http://cran.us.r-project.org/src/contrib/htmltools_0.3.6.tar.gz' build 03-Oct-2018 12:01:59 Content type 'application/x-gzip' length 45408 bytes (44 KB) build 03-Oct-2018 12:01:59 ================================================== build 03-Oct-2018 12:01:59 downloaded 44 KB build 03-Oct-2018 12:01:59 build 03-Oct-2018 12:01:59 trying URL 'http://cran.us.r-project.org/src/contrib/knitr_1.20.tar.gz' build 03-Oct-2018 12:01:59 Content type 'application/x-gzip' length 650082 bytes (634 KB) build 03-Oct-2018 12:01:59 ================================================== build 03-Oct-2018 12:01:59 downloaded 634 KB build 03-Oct-2018 12:01:59 build 03-Oct-2018 12:01:59 trying URL 'http://cran.us.r-project.org/src/contrib/jsonlite_1.5.tar.gz' build 03-Oct-2018 12:02:00 Content type 'application/x-gzip' length 1096810 bytes (1.0 MB) build 03-Oct-2018 12:02:00 ================================================== build 03-Oct-2018 12:02:00 downloaded 1.0 MB build 03-Oct-2018 12:02:00 build 03-Oct-2018 12:02:00 trying URL 'http://cran.us.r-project.org/src/contrib/shiny_1.1.0.tar.gz' build 03-Oct-2018 12:02:01 Content type 'application/x-gzip' length 2350156 bytes (2.2 MB) build 03-Oct-2018 12:02:01 ================================================== build 03-Oct-2018 12:02:01 downloaded 2.2 MB build 03-Oct-2018 12:02:01 build 03-Oct-2018 12:02:01 trying URL 'http://cran.us.r-project.org/src/contrib/magrittr_1.5.tar.gz' build 03-Oct-2018 12:02:02 Content type 'application/x-gzip' length 200504 bytes (195 KB) build 03-Oct-2018 12:02:02 ================================================== build 03-Oct-2018 12:02:02 downloaded 195 KB build 03-Oct-2018 12:02:02 build 03-Oct-2018 12:02:02 trying URL 'http://cran.us.r-project.org/src/contrib/crosstalk_1.0.0.tar.gz' build 03-Oct-2018 12:02:02 Content type 'application/x-gzip' length 563474 bytes (550 KB) build 03-Oct-2018 12:02:03 ================================================== build 03-Oct-2018 12:02:03 downloaded 550 KB build 03-Oct-2018 12:02:03 build 03-Oct-2018 12:02:03 trying URL 'http://cran.us.r-project.org/src/contrib/manipulateWidget_0.10.0.tar.gz' build 03-Oct-2018 12:02:03 Content type 'application/x-gzip' length 3242505 bytes (3.1 MB) build 03-Oct-2018 12:02:04 ================================================== build 03-Oct-2018 12:02:04 downloaded 3.1 MB build 03-Oct-2018 12:02:04 build 03-Oct-2018 12:02:04 trying URL 'http://cran.us.r-project.org/src/contrib/rmarkdown_1.10.tar.gz' build 03-Oct-2018 12:02:04 Content type 'application/x-gzip' length 2447327 bytes (2.3 MB) build 03-Oct-2018 12:02:05 ================================================== build 03-Oct-2018 12:02:05 downloaded 2.3 MB build 03-Oct-2018 12:02:05 build 03-Oct-2018 12:02:05 trying URL 'http://cran.us.r-project.org/src/contrib/deldir_0.1-15.tar.gz' build 03-Oct-2018 12:02:05 Content type 'application/x-gzip' length 73895 bytes (72 KB) build 03-Oct-2018 12:02:05 ================================================== build 03-Oct-2018 12:02:05 downloaded 72 KB build 03-Oct-2018 12:02:05 build 03-Oct-2018 12:02:05 trying URL 'http://cran.us.r-project.org/src/contrib/orientlib_0.10.3.tar.gz' build 03-Oct-2018 12:02:06 Content type 'application/x-gzip' length 193206 bytes (188 KB) build 03-Oct-2018 12:02:06 ================================================== build 03-Oct-2018 12:02:06 downloaded 188 KB build 03-Oct-2018 12:02:06 build 03-Oct-2018 12:02:06 trying URL 'http://cran.us.r-project.org/src/contrib/misc3d_0.8-4.tar.gz' build 03-Oct-2018 12:02:06 Content type 'application/x-gzip' length 66165 bytes (64 KB) build 03-Oct-2018 12:02:06 ================================================== build 03-Oct-2018 12:02:06 downloaded 64 KB build 03-Oct-2018 12:02:06 build 03-Oct-2018 12:02:06 trying URL 'http://cran.us.r-project.org/src/contrib/rstudioapi_0.8.tar.gz' build 03-Oct-2018 12:02:06 Content type 'application/x-gzip' length 47394 bytes (46 KB) build 03-Oct-2018 12:02:07 ================================================== build 03-Oct-2018 12:02:07 downloaded 46 KB build 03-Oct-2018 12:02:07 build 03-Oct-2018 12:02:07 trying URL 'http://cran.us.r-project.org/src/contrib/magick_1.9.tar.gz' build 03-Oct-2018 12:02:07 Content type 'application/x-gzip' length 4984864 bytes (4.8 MB) build 03-Oct-2018 12:02:08 ================================================== build 03-Oct-2018 12:02:08 downloaded 4.8 MB build 03-Oct-2018 12:02:08 build 03-Oct-2018 12:02:08 trying URL 'http://cran.us.r-project.org/src/contrib/rgl_0.99.16.tar.gz' build 03-Oct-2018 12:02:08 Content type 'application/x-gzip' length 3058794 bytes (2.9 MB) build 03-Oct-2018 12:02:09 ================================================== build 03-Oct-2018 12:02:09 downloaded 2.9 MB build 03-Oct-2018 12:02:09 build 03-Oct-2018 12:02:09 * installing *source* package 'colorspace' ... build 03-Oct-2018 12:02:09 ** package 'colorspace' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:02:09 ** libs build 03-Oct-2018 12:02:09 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c colorspace.c -o colorspace.o build 03-Oct-2018 12:02:10 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o colorspace.so colorspace.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:02:10 installing to /usr/local/lib/R/site-library/colorspace/libs build 03-Oct-2018 12:02:10 ** R build 03-Oct-2018 12:02:10 ** data build 03-Oct-2018 12:02:10 *** moving datasets to lazyload DB build 03-Oct-2018 12:02:10 ** inst build 03-Oct-2018 12:02:10 ** preparing package for lazy loading build 03-Oct-2018 12:02:10 Creating a generic function for 'plot' from package 'graphics' in package 'colorspace' build 03-Oct-2018 12:02:10 ** help build 03-Oct-2018 12:02:10 *** installing help indices build 03-Oct-2018 12:02:10 ** building package indices build 03-Oct-2018 12:02:10 ** installing vignettes build 03-Oct-2018 12:02:10 ** testing if installed package can be loaded build 03-Oct-2018 12:02:11 * DONE (colorspace) build 03-Oct-2018 12:02:11 * installing *source* package 'assertthat' ... build 03-Oct-2018 12:02:11 ** package 'assertthat' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:02:11 ** R build 03-Oct-2018 12:02:11 ** preparing package for lazy loading build 03-Oct-2018 12:02:11 ** help build 03-Oct-2018 12:02:11 *** installing help indices build 03-Oct-2018 12:02:11 ** building package indices build 03-Oct-2018 12:02:11 ** testing if installed package can be loaded build 03-Oct-2018 12:02:11 * DONE (assertthat) build 03-Oct-2018 12:02:11 * installing *source* package 'fansi' ... build 03-Oct-2018 12:02:11 ** package 'fansi' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:02:11 ** libs build 03-Oct-2018 12:02:11 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c assumptions.c -o assumptions.o build 03-Oct-2018 12:02:11 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c has.c -o has.o build 03-Oct-2018 12:02:12 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:02:12 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nchar.c -o nchar.o build 03-Oct-2018 12:02:12 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c read.c -o read.o build 03-Oct-2018 12:02:12 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rnchar.c -o rnchar.o build 03-Oct-2018 12:02:12 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c state.c -o state.o build 03-Oct-2018 12:02:12 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c strip.c -o strip.o build 03-Oct-2018 12:02:12 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c strsplit.c -o strsplit.o build 03-Oct-2018 12:02:12 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tabs.c -o tabs.o build 03-Oct-2018 12:02:12 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tohtml.c -o tohtml.o build 03-Oct-2018 12:02:13 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unhandled.c -o unhandled.o build 03-Oct-2018 12:02:13 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unique.c -o unique.o build 03-Oct-2018 12:02:13 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8.c -o utf8.o build 03-Oct-2018 12:02:13 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o build 03-Oct-2018 12:02:13 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c wrap.c -o wrap.o build 03-Oct-2018 12:02:13 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o fansi.so assumptions.o has.o init.o nchar.o read.o rnchar.o state.o strip.o strsplit.o tabs.o tohtml.o unhandled.o unique.o utf8.o utils.o wrap.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:02:13 installing to /usr/local/lib/R/site-library/fansi/libs build 03-Oct-2018 12:02:13 ** R build 03-Oct-2018 12:02:13 ** inst build 03-Oct-2018 12:02:13 ** preparing package for lazy loading build 03-Oct-2018 12:02:13 ** help build 03-Oct-2018 12:02:13 *** installing help indices build 03-Oct-2018 12:02:13 ** building package indices build 03-Oct-2018 12:02:13 ** installing vignettes build 03-Oct-2018 12:02:13 ** testing if installed package can be loaded build 03-Oct-2018 12:02:14 * DONE (fansi) build 03-Oct-2018 12:02:14 * installing *source* package 'utf8' ... build 03-Oct-2018 12:02:14 ** package 'utf8' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:02:14 ** libs build 03-Oct-2018 12:02:14 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c as_utf8.c -o as_utf8.o build 03-Oct-2018 12:02:14 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bytes.c -o bytes.o build 03-Oct-2018 12:02:14 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c context.c -o context.o build 03-Oct-2018 12:02:14 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:02:14 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c render.c -o render.o build 03-Oct-2018 12:02:14 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c render_table.c -o render_table.o build 03-Oct-2018 12:02:14 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c string.c -o string.o build 03-Oct-2018 12:02:15 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c text.c -o text.o build 03-Oct-2018 12:02:15 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8_encode.c -o utf8_encode.o build 03-Oct-2018 12:02:15 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8_format.c -o utf8_format.o build 03-Oct-2018 12:02:15 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8_normalize.c -o utf8_normalize.o build 03-Oct-2018 12:02:15 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8_valid.c -o utf8_valid.o build 03-Oct-2018 12:02:15 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8_width.c -o utf8_width.o build 03-Oct-2018 12:02:15 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o build 03-Oct-2018 12:02:15 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite/src/array.c -o utf8lite/src/array.o build 03-Oct-2018 12:02:15 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite/src/char.c -o utf8lite/src/char.o build 03-Oct-2018 12:02:15 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite/src/encode.c -o utf8lite/src/encode.o build 03-Oct-2018 12:02:15 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite/src/error.c -o utf8lite/src/error.o build 03-Oct-2018 12:02:15 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite/src/escape.c -o utf8lite/src/escape.o build 03-Oct-2018 12:02:15 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite/src/graph.c -o utf8lite/src/graph.o build 03-Oct-2018 12:02:15 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite/src/graphscan.c -o utf8lite/src/graphscan.o build 03-Oct-2018 12:02:16 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite/src/normalize.c -o utf8lite/src/normalize.o build 03-Oct-2018 12:02:16 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite/src/render.c -o utf8lite/src/render.o build 03-Oct-2018 12:02:16 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite/src/text.c -o utf8lite/src/text.o build 03-Oct-2018 12:02:16 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite/src/textassign.c -o utf8lite/src/textassign.o build 03-Oct-2018 12:02:16 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite/src/textiter.c -o utf8lite/src/textiter.o build 03-Oct-2018 12:02:16 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite/src/textmap.c -o utf8lite/src/textmap.o build 03-Oct-2018 12:02:16 ar rcs libcutf8lite.a utf8lite/src/array.o utf8lite/src/char.o utf8lite/src/encode.o utf8lite/src/error.o utf8lite/src/escape.o utf8lite/src/graph.o utf8lite/src/graphscan.o utf8lite/src/normalize.o utf8lite/src/render.o utf8lite/src/text.o utf8lite/src/textassign.o utf8lite/src/textiter.o utf8lite/src/textmap.o build 03-Oct-2018 12:02:16 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o utf8.so as_utf8.o bytes.o context.o init.o render.o render_table.o string.o text.o utf8_encode.o utf8_format.o utf8_normalize.o utf8_valid.o utf8_width.o util.o -L. -lcutf8lite -L/usr/lib/R/lib -lR build 03-Oct-2018 12:02:16 installing to /usr/local/lib/R/site-library/utf8/libs build 03-Oct-2018 12:02:16 ** R build 03-Oct-2018 12:02:16 ** inst build 03-Oct-2018 12:02:16 ** preparing package for lazy loading build 03-Oct-2018 12:02:16 ** help build 03-Oct-2018 12:02:16 *** installing help indices build 03-Oct-2018 12:02:16 ** building package indices build 03-Oct-2018 12:02:16 ** installing vignettes build 03-Oct-2018 12:02:16 ** testing if installed package can be loaded build 03-Oct-2018 12:02:17 * DONE (utf8) build 03-Oct-2018 12:02:17 * installing *source* package 'ps' ... build 03-Oct-2018 12:02:17 ** package 'ps' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:02:17 ** libs build 03-Oct-2018 12:02:17 gcc -std=gnu99 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall px.c -o px build 03-Oct-2018 12:02:17 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:02:17 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c api-common.c -o api-common.o build 03-Oct-2018 12:02:17 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c common.c -o common.o build 03-Oct-2018 12:02:17 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c extra.c -o extra.o build 03-Oct-2018 12:02:17 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dummy.c -o dummy.o build 03-Oct-2018 12:02:17 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c posix.c -o posix.o build 03-Oct-2018 12:02:18 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c api-posix.c -o api-posix.o build 03-Oct-2018 12:02:18 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c linux.c -o linux.o build 03-Oct-2018 12:02:18 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c api-linux.c -o api-linux.o build 03-Oct-2018 12:02:18 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o ps.so init.o api-common.o common.o extra.o dummy.o posix.o api-posix.o linux.o api-linux.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:02:18 installing via 'install.libs.R' to /usr/local/lib/R/site-library/ps build 03-Oct-2018 12:02:18 ** R build 03-Oct-2018 12:02:18 ** inst build 03-Oct-2018 12:02:18 ** preparing package for lazy loading build 03-Oct-2018 12:02:18 ** help build 03-Oct-2018 12:02:18 *** installing help indices build 03-Oct-2018 12:02:18 ** building package indices build 03-Oct-2018 12:02:18 ** testing if installed package can be loaded build 03-Oct-2018 12:02:19 * DONE (ps) build 03-Oct-2018 12:02:19 * installing *source* package 'labeling' ... build 03-Oct-2018 12:02:19 ** package 'labeling' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:02:19 ** R build 03-Oct-2018 12:02:19 ** preparing package for lazy loading build 03-Oct-2018 12:02:19 ** help build 03-Oct-2018 12:02:19 *** installing help indices build 03-Oct-2018 12:02:19 ** building package indices build 03-Oct-2018 12:02:19 ** testing if installed package can be loaded build 03-Oct-2018 12:02:19 * DONE (labeling) build 03-Oct-2018 12:02:19 * installing *source* package 'RColorBrewer' ... build 03-Oct-2018 12:02:19 ** package 'RColorBrewer' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:02:19 ** R build 03-Oct-2018 12:02:19 ** inst build 03-Oct-2018 12:02:19 ** preparing package for lazy loading build 03-Oct-2018 12:02:19 ** help build 03-Oct-2018 12:02:19 *** installing help indices build 03-Oct-2018 12:02:19 ** building package indices build 03-Oct-2018 12:02:19 ** testing if installed package can be loaded build 03-Oct-2018 12:02:20 * DONE (RColorBrewer) build 03-Oct-2018 12:02:20 * installing *source* package 'glue' ... build 03-Oct-2018 12:02:20 ** package 'glue' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:02:20 ** libs build 03-Oct-2018 12:02:20 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c glue.c -o glue.o build 03-Oct-2018 12:02:20 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:02:20 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c trim.c -o trim.o build 03-Oct-2018 12:02:20 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o glue.so glue.o init.o trim.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:02:20 installing to /usr/local/lib/R/site-library/glue/libs build 03-Oct-2018 12:02:20 ** R build 03-Oct-2018 12:02:20 ** inst build 03-Oct-2018 12:02:20 ** byte-compile and prepare package for lazy loading build 03-Oct-2018 12:02:20 ** help build 03-Oct-2018 12:02:20 *** installing help indices build 03-Oct-2018 12:02:20 *** copying figures build 03-Oct-2018 12:02:20 ** building package indices build 03-Oct-2018 12:02:20 ** installing vignettes build 03-Oct-2018 12:02:20 ** testing if installed package can be loaded build 03-Oct-2018 12:02:21 * DONE (glue) build 03-Oct-2018 12:02:23 * installing *source* package 'stringi' ... build 03-Oct-2018 12:02:24 ** package 'stringi' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:02:24 checking for R_HOME... /usr/lib/R build 03-Oct-2018 12:02:24 checking for R... /usr/lib/R/bin/R build 03-Oct-2018 12:02:24 checking for endianness... little build 03-Oct-2018 12:02:24 checking for R >= 3.1.0 for C++11 use... yes build 03-Oct-2018 12:02:24 checking for R < 3.4.0 for CXX1X flag use... yes build 03-Oct-2018 12:02:24 checking for cat... /bin/cat build 03-Oct-2018 12:02:24 checking for local ICUDT_DIR... icu61/data build 03-Oct-2018 12:02:24 checking for gcc... gcc -std=gnu99 build 03-Oct-2018 12:02:24 checking whether the C compiler works... yes build 03-Oct-2018 12:02:24 checking for C compiler default output file name... a.out build 03-Oct-2018 12:02:24 checking for suffix of executables... build 03-Oct-2018 12:02:24 checking whether we are cross compiling... no build 03-Oct-2018 12:02:24 checking for suffix of object files... o build 03-Oct-2018 12:02:25 checking whether we are using the GNU C compiler... yes build 03-Oct-2018 12:02:25 checking whether gcc -std=gnu99 accepts -g... yes build 03-Oct-2018 12:02:25 checking for gcc -std=gnu99 option to accept ISO C89... none needed build 03-Oct-2018 12:02:25 checking how to run the C preprocessor... g++ -E build 03-Oct-2018 12:02:25 checking for grep that handles long lines and -e... /bin/grep build 03-Oct-2018 12:02:25 checking for egrep... /bin/grep -E build 03-Oct-2018 12:02:25 checking for ANSI C header files... yes build 03-Oct-2018 12:02:25 checking for sys/types.h... yes build 03-Oct-2018 12:02:25 checking for sys/stat.h... yes build 03-Oct-2018 12:02:25 checking for stdlib.h... yes build 03-Oct-2018 12:02:25 checking for string.h... yes build 03-Oct-2018 12:02:25 checking for memory.h... yes build 03-Oct-2018 12:02:25 checking for strings.h... yes build 03-Oct-2018 12:02:25 checking for inttypes.h... yes build 03-Oct-2018 12:02:25 checking for stdint.h... yes build 03-Oct-2018 12:02:25 checking for unistd.h... yes build 03-Oct-2018 12:02:25 checking elf.h usability... yes build 03-Oct-2018 12:02:25 checking elf.h presence... yes build 03-Oct-2018 12:02:25 checking for elf.h... yes build 03-Oct-2018 12:02:25 checking whether we are using the GNU C++ compiler... yes build 03-Oct-2018 12:02:25 checking whether g++ -std=c++11 accepts -g... yes build 03-Oct-2018 12:02:26 checking whether the C++ compiler supports the long long type... yes build 03-Oct-2018 12:02:26 checking whether the compiler implements namespaces... yes build 03-Oct-2018 12:02:26 checking whether the compiler supports Standard Template Library... yes build 03-Oct-2018 12:02:26 checking whether std::map is available... yes build 03-Oct-2018 12:02:26 checking for pkg-config... /usr/bin/pkg-config build 03-Oct-2018 12:02:26 checking with pkg-config for the system ICU4C... 55.1 build 03-Oct-2018 12:02:26 checking for ICU4C >= 52... yes build 03-Oct-2018 12:02:26 checking for additional required CPPFLAGS, LDFLAGS, and LIBS... done build 03-Oct-2018 12:02:26 checking whether we may build an ICU4C-based project... yes build 03-Oct-2018 12:02:26 checking programmatically for sufficient U_ICU_VERSION_MAJOR_NUM... yes build 03-Oct-2018 12:02:27 checking programmatically for U_CHARSET_IS_UTF8==0... yes build 03-Oct-2018 12:02:27 checking for available ICU data library (ucnv, uloc, utrans)... yes build 03-Oct-2018 12:02:27 checking for available ICU data library (ucol)... yes build 03-Oct-2018 12:02:27 configure: creating ./config.status build 03-Oct-2018 12:02:27 config.status: creating src/Makevars build 03-Oct-2018 12:02:27 config.status: creating src/uconfig_local.h build 03-Oct-2018 12:02:27 config.status: creating src/install.libs.R build 03-Oct-2018 12:02:27 build 03-Oct-2018 12:02:27 *** stringi configure summary: build 03-Oct-2018 12:02:27 ICU_FOUND=1 build 03-Oct-2018 12:02:27 STRINGI_CXXSTD=CXX_STD=CXX11 build 03-Oct-2018 12:02:27 STRINGI_CFLAGS= -fpic build 03-Oct-2018 12:02:27 STRINGI_CPPFLAGS=-I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H build 03-Oct-2018 12:02:27 STRINGI_CXXFLAGS= -fpic build 03-Oct-2018 12:02:27 STRINGI_LDFLAGS=-L/usr/lib/x86_64-linux-gnu build 03-Oct-2018 12:02:27 STRINGI_LIBS=-licui18n -licuuc -licudata build 03-Oct-2018 12:02:27 build 03-Oct-2018 12:02:27 *** compiler settings used: build 03-Oct-2018 12:02:27 CC=gcc -std=gnu99 build 03-Oct-2018 12:02:27 CPP=g++ -E build 03-Oct-2018 12:02:27 LD=g++ build 03-Oct-2018 12:02:27 CFLAGS=-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic build 03-Oct-2018 12:02:27 CPPFLAGS= -UDEBUG -DNDEBUG build 03-Oct-2018 12:02:27 CXX=g++ -std=c++11 build 03-Oct-2018 12:02:27 CXXFLAGS=-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic build 03-Oct-2018 12:02:27 LDFLAGS= build 03-Oct-2018 12:02:27 LIBS= build 03-Oct-2018 12:02:27 build 03-Oct-2018 12:02:27 ** libs build 03-Oct-2018 12:02:27 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_brkiter.cpp -o stri_brkiter.o build 03-Oct-2018 12:02:28 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_collator.cpp -o stri_collator.o build 03-Oct-2018 12:02:28 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_common.cpp -o stri_common.o build 03-Oct-2018 12:02:29 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_compare.cpp -o stri_compare.o build 03-Oct-2018 12:02:29 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_base.cpp -o stri_container_base.o build 03-Oct-2018 12:02:30 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_bytesearch.cpp -o stri_container_bytesearch.o build 03-Oct-2018 12:02:30 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_listint.cpp -o stri_container_listint.o build 03-Oct-2018 12:02:31 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_listraw.cpp -o stri_container_listraw.o build 03-Oct-2018 12:02:31 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_listutf8.cpp -o stri_container_listutf8.o build 03-Oct-2018 12:02:31 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_regex.cpp -o stri_container_regex.o build 03-Oct-2018 12:02:32 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_usearch.cpp -o stri_container_usearch.o build 03-Oct-2018 12:02:32 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_utf16.cpp -o stri_container_utf16.o build 03-Oct-2018 12:02:32 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_utf8.cpp -o stri_container_utf8.o build 03-Oct-2018 12:02:33 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_utf8_indexable.cpp -o stri_container_utf8_indexable.o build 03-Oct-2018 12:02:33 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_encoding_conversion.cpp -o stri_encoding_conversion.o build 03-Oct-2018 12:02:34 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_encoding_detection.cpp -o stri_encoding_detection.o build 03-Oct-2018 12:02:35 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_encoding_management.cpp -o stri_encoding_management.o build 03-Oct-2018 12:02:36 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_escape.cpp -o stri_escape.o build 03-Oct-2018 12:02:36 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_exception.cpp -o stri_exception.o build 03-Oct-2018 12:02:36 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_ICU_settings.cpp -o stri_ICU_settings.o build 03-Oct-2018 12:02:37 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_join.cpp -o stri_join.o build 03-Oct-2018 12:02:37 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_length.cpp -o stri_length.o build 03-Oct-2018 12:02:38 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_pad.cpp -o stri_pad.o build 03-Oct-2018 12:02:38 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_prepare_arg.cpp -o stri_prepare_arg.o build 03-Oct-2018 12:02:39 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_random.cpp -o stri_random.o build 03-Oct-2018 12:02:39 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_reverse.cpp -o stri_reverse.o build 03-Oct-2018 12:02:39 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_class_count.cpp -o stri_search_class_count.o build 03-Oct-2018 12:02:40 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_class_detect.cpp -o stri_search_class_detect.o build 03-Oct-2018 12:02:40 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_class_extract.cpp -o stri_search_class_extract.o build 03-Oct-2018 12:02:41 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_class_locate.cpp -o stri_search_class_locate.o build 03-Oct-2018 12:02:41 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_class_replace.cpp -o stri_search_class_replace.o build 03-Oct-2018 12:02:42 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_class_split.cpp -o stri_search_class_split.o build 03-Oct-2018 12:02:42 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_class_startsendswith.cpp -o stri_search_class_startsendswith.o build 03-Oct-2018 12:02:43 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_class_subset.cpp -o stri_search_class_subset.o build 03-Oct-2018 12:02:43 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_class_trim.cpp -o stri_search_class_trim.o build 03-Oct-2018 12:02:44 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_common.cpp -o stri_search_common.o build 03-Oct-2018 12:02:44 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_count.cpp -o stri_search_coll_count.o build 03-Oct-2018 12:02:44 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_detect.cpp -o stri_search_coll_detect.o build 03-Oct-2018 12:02:45 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_extract.cpp -o stri_search_coll_extract.o build 03-Oct-2018 12:02:45 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_locate.cpp -o stri_search_coll_locate.o build 03-Oct-2018 12:02:45 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_replace.cpp -o stri_search_coll_replace.o build 03-Oct-2018 12:02:46 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_split.cpp -o stri_search_coll_split.o build 03-Oct-2018 12:02:46 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_startsendswith.cpp -o stri_search_coll_startsendswith.o build 03-Oct-2018 12:02:47 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_subset.cpp -o stri_search_coll_subset.o build 03-Oct-2018 12:02:47 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_boundaries_count.cpp -o stri_search_boundaries_count.o build 03-Oct-2018 12:02:48 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_boundaries_extract.cpp -o stri_search_boundaries_extract.o build 03-Oct-2018 12:02:48 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_boundaries_locate.cpp -o stri_search_boundaries_locate.o build 03-Oct-2018 12:02:48 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_boundaries_split.cpp -o stri_search_boundaries_split.o build 03-Oct-2018 12:02:49 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_count.cpp -o stri_search_fixed_count.o build 03-Oct-2018 12:02:49 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_detect.cpp -o stri_search_fixed_detect.o build 03-Oct-2018 12:02:50 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_extract.cpp -o stri_search_fixed_extract.o build 03-Oct-2018 12:02:50 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_locate.cpp -o stri_search_fixed_locate.o build 03-Oct-2018 12:02:50 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_replace.cpp -o stri_search_fixed_replace.o build 03-Oct-2018 12:02:51 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_split.cpp -o stri_search_fixed_split.o build 03-Oct-2018 12:02:51 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_subset.cpp -o stri_search_fixed_subset.o build 03-Oct-2018 12:02:52 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_startsendswith.cpp -o stri_search_fixed_startsendswith.o build 03-Oct-2018 12:02:52 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_in.cpp -o stri_search_in.o build 03-Oct-2018 12:02:52 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_other_replace.cpp -o stri_search_other_replace.o build 03-Oct-2018 12:02:53 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_other_split.cpp -o stri_search_other_split.o build 03-Oct-2018 12:02:53 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_count.cpp -o stri_search_regex_count.o build 03-Oct-2018 12:02:53 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_detect.cpp -o stri_search_regex_detect.o build 03-Oct-2018 12:02:54 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_extract.cpp -o stri_search_regex_extract.o build 03-Oct-2018 12:02:54 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_locate.cpp -o stri_search_regex_locate.o build 03-Oct-2018 12:02:55 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_match.cpp -o stri_search_regex_match.o build 03-Oct-2018 12:02:55 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_replace.cpp -o stri_search_regex_replace.o build 03-Oct-2018 12:02:56 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_split.cpp -o stri_search_regex_split.o build 03-Oct-2018 12:02:56 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_subset.cpp -o stri_search_regex_subset.o build 03-Oct-2018 12:02:57 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_sort.cpp -o stri_sort.o build 03-Oct-2018 12:02:58 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_stats.cpp -o stri_stats.o build 03-Oct-2018 12:02:58 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_stringi.cpp -o stri_stringi.o build 03-Oct-2018 12:02:59 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_sub.cpp -o stri_sub.o build 03-Oct-2018 12:02:59 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_test.cpp -o stri_test.o build 03-Oct-2018 12:02:59 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_time_zone.cpp -o stri_time_zone.o build 03-Oct-2018 12:03:00 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_time_calendar.cpp -o stri_time_calendar.o build 03-Oct-2018 12:03:00 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_time_symbols.cpp -o stri_time_symbols.o build 03-Oct-2018 12:03:01 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_time_format.cpp -o stri_time_format.o build 03-Oct-2018 12:03:01 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_trans_casemap.cpp -o stri_trans_casemap.o build 03-Oct-2018 12:03:01 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_trans_other.cpp -o stri_trans_other.o build 03-Oct-2018 12:03:02 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_trans_normalization.cpp -o stri_trans_normalization.o build 03-Oct-2018 12:03:02 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_trans_transliterate.cpp -o stri_trans_transliterate.o build 03-Oct-2018 12:03:02 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_ucnv.cpp -o stri_ucnv.o build 03-Oct-2018 12:03:03 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_uloc.cpp -o stri_uloc.o build 03-Oct-2018 12:03:03 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_utils.cpp -o stri_utils.o build 03-Oct-2018 12:03:03 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_wrap.cpp -o stri_wrap.o build 03-Oct-2018 12:03:04 g++ -std=c++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o stringi.so stri_brkiter.o stri_collator.o stri_common.o stri_compare.o stri_container_base.o stri_container_bytesearch.o stri_container_listint.o stri_container_listraw.o stri_container_listutf8.o stri_container_regex.o stri_container_usearch.o stri_container_utf16.o stri_container_utf8.o stri_container_utf8_indexable.o stri_encoding_conversion.o stri_encoding_detection.o stri_encoding_management.o stri_escape.o stri_exception.o stri_ICU_settings.o stri_join.o stri_length.o stri_pad.o stri_prepare_arg.o stri_random.o stri_reverse.o stri_search_class_count.o stri_search_class_detect.o stri_search_class_extract.o stri_search_class_locate.o stri_search_class_replace.o stri_search_class_split.o stri_search_class_startsendswith.o stri_search_class_subset.o stri_search_class_trim.o stri_search_common.o stri_search_coll_count.o stri_search_coll_detect.o stri_search_coll_extract.o stri_search_coll_locate.o stri_search_coll_replace.o stri_search_coll_split.o stri_search_coll_startsendswith.o stri_search_coll_subset.o stri_search_boundaries_count.o stri_search_boundaries_extract.o stri_search_boundaries_locate.o stri_search_boundaries_split.o stri_search_fixed_count.o stri_search_fixed_detect.o stri_search_fixed_extract.o stri_search_fixed_locate.o stri_search_fixed_replace.o stri_search_fixed_split.o stri_search_fixed_subset.o stri_search_fixed_startsendswith.o stri_search_in.o stri_search_other_replace.o stri_search_other_split.o stri_search_regex_count.o stri_search_regex_detect.o stri_search_regex_extract.o stri_search_regex_locate.o stri_search_regex_match.o stri_search_regex_replace.o stri_search_regex_split.o stri_search_regex_subset.o stri_sort.o stri_stats.o stri_stringi.o stri_sub.o stri_test.o stri_time_zone.o stri_time_calendar.o stri_time_symbols.o stri_time_format.o stri_trans_casemap.o stri_trans_other.o stri_trans_normalization.o stri_trans_transliterate.o stri_ucnv.o stri_uloc.o stri_utils.o stri_wrap.o -L/usr/lib/x86_64-linux-gnu -licui18n -licuuc -licudata -L/usr/lib/R/lib -lR build 03-Oct-2018 12:03:05 installing via 'install.libs.R' to /usr/local/lib/R/site-library/stringi build 03-Oct-2018 12:03:05 ** R build 03-Oct-2018 12:03:05 ** inst build 03-Oct-2018 12:03:05 ** preparing package for lazy loading build 03-Oct-2018 12:03:05 ** help build 03-Oct-2018 12:03:05 *** installing help indices build 03-Oct-2018 12:03:05 ** building package indices build 03-Oct-2018 12:03:06 ** testing if installed package can be loaded build 03-Oct-2018 12:03:06 * DONE (stringi) build 03-Oct-2018 12:03:18 * installing *source* package 'BH' ... build 03-Oct-2018 12:03:19 ** package 'BH' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:03:19 ** inst build 03-Oct-2018 12:03:20 ** help build 03-Oct-2018 12:03:20 *** installing help indices build 03-Oct-2018 12:03:20 ** building package indices build 03-Oct-2018 12:03:20 ** testing if installed package can be loaded build 03-Oct-2018 12:03:20 * DONE (BH) build 03-Oct-2018 12:03:21 * installing *source* package 'gtable' ... build 03-Oct-2018 12:03:21 ** package 'gtable' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:03:21 ** R build 03-Oct-2018 12:03:21 ** preparing package for lazy loading build 03-Oct-2018 12:03:21 ** help build 03-Oct-2018 12:03:21 *** installing help indices build 03-Oct-2018 12:03:21 ** building package indices build 03-Oct-2018 12:03:21 ** testing if installed package can be loaded build 03-Oct-2018 12:03:21 * DONE (gtable) build 03-Oct-2018 12:03:22 * installing *source* package 'viridisLite' ... build 03-Oct-2018 12:03:22 ** package 'viridisLite' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:03:22 ** R build 03-Oct-2018 12:03:22 ** data build 03-Oct-2018 12:03:22 *** moving datasets to lazyload DB build 03-Oct-2018 12:03:22 ** preparing package for lazy loading build 03-Oct-2018 12:03:22 ** help build 03-Oct-2018 12:03:22 *** installing help indices build 03-Oct-2018 12:03:22 *** copying figures build 03-Oct-2018 12:03:22 ** building package indices build 03-Oct-2018 12:03:22 ** testing if installed package can be loaded build 03-Oct-2018 12:03:22 * DONE (viridisLite) build 03-Oct-2018 12:03:22 * installing *source* package 'withr' ... build 03-Oct-2018 12:03:22 ** package 'withr' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:03:22 ** R build 03-Oct-2018 12:03:22 ** inst build 03-Oct-2018 12:03:22 ** preparing package for lazy loading build 03-Oct-2018 12:03:22 ** help build 03-Oct-2018 12:03:22 *** installing help indices build 03-Oct-2018 12:03:22 ** building package indices build 03-Oct-2018 12:03:22 ** installing vignettes build 03-Oct-2018 12:03:22 ** testing if installed package can be loaded build 03-Oct-2018 12:03:22 * DONE (withr) build 03-Oct-2018 12:03:23 * installing *source* package 'backports' ... build 03-Oct-2018 12:03:23 ** package 'backports' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:03:23 ** libs build 03-Oct-2018 12:03:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dotsElt.c -o dotsElt.o build 03-Oct-2018 12:03:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dotsLength.c -o dotsLength.o build 03-Oct-2018 12:03:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:03:23 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o backports.so dotsElt.o dotsLength.o init.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:03:23 installing to /usr/local/lib/R/site-library/backports/libs build 03-Oct-2018 12:03:23 ** R build 03-Oct-2018 12:03:23 ** byte-compile and prepare package for lazy loading build 03-Oct-2018 12:03:23 ** help build 03-Oct-2018 12:03:23 *** installing help indices build 03-Oct-2018 12:03:23 ** building package indices build 03-Oct-2018 12:03:23 ** testing if installed package can be loaded build 03-Oct-2018 12:03:23 * DONE (backports) build 03-Oct-2018 12:03:23 * installing *source* package 'xfun' ... build 03-Oct-2018 12:03:23 ** package 'xfun' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:03:24 ** R build 03-Oct-2018 12:03:24 ** inst build 03-Oct-2018 12:03:24 ** preparing package for lazy loading build 03-Oct-2018 12:03:24 ** help build 03-Oct-2018 12:03:24 *** installing help indices build 03-Oct-2018 12:03:24 ** building package indices build 03-Oct-2018 12:03:24 ** installing vignettes build 03-Oct-2018 12:03:24 ** testing if installed package can be loaded build 03-Oct-2018 12:03:24 * DONE (xfun) build 03-Oct-2018 12:03:24 * installing *source* package 'yaml' ... build 03-Oct-2018 12:03:24 ** package 'yaml' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:03:24 ** libs build 03-Oct-2018 12:03:24 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c api.c -o api.o build 03-Oct-2018 12:03:24 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dumper.c -o dumper.o build 03-Oct-2018 12:03:25 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c emitter.c -o emitter.o build 03-Oct-2018 12:03:25 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c implicit.c -o implicit.o build 03-Oct-2018 12:03:25 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c loader.c -o loader.o build 03-Oct-2018 12:03:26 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c parser.c -o parser.o build 03-Oct-2018 12:03:26 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c r_emit.c -o r_emit.o build 03-Oct-2018 12:03:26 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c r_ext.c -o r_ext.o build 03-Oct-2018 12:03:26 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c r_parse.c -o r_parse.o build 03-Oct-2018 12:03:27 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c reader.c -o reader.o build 03-Oct-2018 12:03:27 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scanner.c -o scanner.o build 03-Oct-2018 12:03:28 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c writer.c -o writer.o build 03-Oct-2018 12:03:28 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o yaml.so api.o dumper.o emitter.o implicit.o loader.o parser.o r_emit.o r_ext.o r_parse.o reader.o scanner.o writer.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:03:28 installing to /usr/local/lib/R/site-library/yaml/libs build 03-Oct-2018 12:03:28 ** R build 03-Oct-2018 12:03:28 ** inst build 03-Oct-2018 12:03:28 ** preparing package for lazy loading build 03-Oct-2018 12:03:28 ** help build 03-Oct-2018 12:03:28 *** installing help indices build 03-Oct-2018 12:03:28 ** building package indices build 03-Oct-2018 12:03:28 ** testing if installed package can be loaded build 03-Oct-2018 12:03:28 * DONE (yaml) build 03-Oct-2018 12:03:28 * installing *source* package 'digest' ... build 03-Oct-2018 12:03:28 ** package 'digest' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:03:28 ** libs build 03-Oct-2018 12:03:28 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c aes.c -o aes.o build 03-Oct-2018 12:03:29 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c crc32.c -o crc32.o build 03-Oct-2018 12:03:29 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c digest.c -o digest.o build 03-Oct-2018 12:03:29 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:03:29 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c md5.c -o md5.o build 03-Oct-2018 12:03:29 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pmurhash.c -o pmurhash.o build 03-Oct-2018 12:03:29 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c raes.c -o raes.o build 03-Oct-2018 12:03:29 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sha1.c -o sha1.o build 03-Oct-2018 12:03:30 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sha2.c -o sha2.o build 03-Oct-2018 12:03:30 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sha256.c -o sha256.o build 03-Oct-2018 12:03:30 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xxhash.c -o xxhash.o build 03-Oct-2018 12:03:30 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o digest.so aes.o crc32.o digest.o init.o md5.o pmurhash.o raes.o sha1.o sha2.o sha256.o xxhash.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:03:30 installing to /usr/local/lib/R/site-library/digest/libs build 03-Oct-2018 12:03:30 ** R build 03-Oct-2018 12:03:30 ** inst build 03-Oct-2018 12:03:30 ** preparing package for lazy loading build 03-Oct-2018 12:03:30 ** help build 03-Oct-2018 12:03:30 *** installing help indices build 03-Oct-2018 12:03:30 ** building package indices build 03-Oct-2018 12:03:30 ** installing vignettes build 03-Oct-2018 12:03:30 ** testing if installed package can be loaded build 03-Oct-2018 12:03:31 * DONE (digest) build 03-Oct-2018 12:03:32 * installing *source* package 'Rcpp' ... build 03-Oct-2018 12:03:32 ** package 'Rcpp' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:03:32 ** libs build 03-Oct-2018 12:03:32 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/ -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Date.cpp -o Date.o build 03-Oct-2018 12:03:34 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/ -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Module.cpp -o Module.o build 03-Oct-2018 12:03:39 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/ -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rcpp_init.cpp -o Rcpp_init.o build 03-Oct-2018 12:03:41 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/ -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c api.cpp -o api.o build 03-Oct-2018 12:03:43 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/ -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c attributes.cpp -o attributes.o build 03-Oct-2018 12:03:54 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/ -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c barrier.cpp -o barrier.o build 03-Oct-2018 12:03:54 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o Rcpp.so Date.o Module.o Rcpp_init.o api.o attributes.o barrier.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:03:54 installing to /usr/local/lib/R/site-library/Rcpp/libs build 03-Oct-2018 12:03:54 ** R build 03-Oct-2018 12:03:54 ** inst build 03-Oct-2018 12:03:54 ** preparing package for lazy loading build 03-Oct-2018 12:03:55 ** help build 03-Oct-2018 12:03:55 *** installing help indices build 03-Oct-2018 12:03:55 ** building package indices build 03-Oct-2018 12:03:55 ** installing vignettes build 03-Oct-2018 12:03:55 ** testing if installed package can be loaded build 03-Oct-2018 12:03:55 * DONE (Rcpp) build 03-Oct-2018 12:03:56 * installing *source* package 'highr' ... build 03-Oct-2018 12:03:56 ** package 'highr' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:03:56 ** R build 03-Oct-2018 12:03:56 ** inst build 03-Oct-2018 12:03:56 ** preparing package for lazy loading build 03-Oct-2018 12:03:56 ** help build 03-Oct-2018 12:03:56 *** installing help indices build 03-Oct-2018 12:03:56 ** building package indices build 03-Oct-2018 12:03:56 ** installing vignettes build 03-Oct-2018 12:03:56 ** testing if installed package can be loaded build 03-Oct-2018 12:03:56 * DONE (highr) build 03-Oct-2018 12:03:56 * installing *source* package 'mime' ... build 03-Oct-2018 12:03:56 ** package 'mime' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:03:56 ** libs build 03-Oct-2018 12:03:56 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rawmatch.c -o rawmatch.o build 03-Oct-2018 12:03:56 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o mime.so rawmatch.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:03:56 installing to /usr/local/lib/R/site-library/mime/libs build 03-Oct-2018 12:03:56 ** R build 03-Oct-2018 12:03:56 ** preparing package for lazy loading build 03-Oct-2018 12:03:56 ** help build 03-Oct-2018 12:03:56 *** installing help indices build 03-Oct-2018 12:03:56 ** building package indices build 03-Oct-2018 12:03:56 ** testing if installed package can be loaded build 03-Oct-2018 12:03:56 * DONE (mime) build 03-Oct-2018 12:03:57 * installing *source* package 'xtable' ... build 03-Oct-2018 12:03:57 ** package 'xtable' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:03:57 ** R build 03-Oct-2018 12:03:57 ** data build 03-Oct-2018 12:03:57 ** inst build 03-Oct-2018 12:03:57 ** preparing package for lazy loading build 03-Oct-2018 12:03:57 ** help build 03-Oct-2018 12:03:57 *** installing help indices build 03-Oct-2018 12:03:57 ** building package indices build 03-Oct-2018 12:03:57 ** installing vignettes build 03-Oct-2018 12:03:57 ** testing if installed package can be loaded build 03-Oct-2018 12:03:57 * DONE (xtable) build 03-Oct-2018 12:03:57 * installing *source* package 'R6' ... build 03-Oct-2018 12:03:57 ** package 'R6' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:03:57 ** R build 03-Oct-2018 12:03:57 ** inst build 03-Oct-2018 12:03:57 ** preparing package for lazy loading build 03-Oct-2018 12:03:57 ** help build 03-Oct-2018 12:03:57 *** installing help indices build 03-Oct-2018 12:03:57 ** building package indices build 03-Oct-2018 12:03:57 ** installing vignettes build 03-Oct-2018 12:03:57 ** testing if installed package can be loaded build 03-Oct-2018 12:03:58 * DONE (R6) build 03-Oct-2018 12:03:58 * installing *source* package 'sourcetools' ... build 03-Oct-2018 12:03:58 ** package 'sourcetools' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:03:58 ** libs build 03-Oct-2018 12:03:58 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Reader.cpp -o Reader.o build 03-Oct-2018 12:03:58 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Tokenizer.cpp -o Tokenizer.o build 03-Oct-2018 12:03:59 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sourcetools-init.c -o sourcetools-init.o build 03-Oct-2018 12:03:59 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o sourcetools.so Reader.o Tokenizer.o sourcetools-init.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:03:59 installing to /usr/local/lib/R/site-library/sourcetools/libs build 03-Oct-2018 12:03:59 ** R build 03-Oct-2018 12:03:59 ** inst build 03-Oct-2018 12:03:59 ** preparing package for lazy loading build 03-Oct-2018 12:03:59 ** help build 03-Oct-2018 12:03:59 *** installing help indices build 03-Oct-2018 12:03:59 ** building package indices build 03-Oct-2018 12:04:00 ** testing if installed package can be loaded build 03-Oct-2018 12:04:00 * DONE (sourcetools) build 03-Oct-2018 12:04:00 * installing *source* package 'crayon' ... build 03-Oct-2018 12:04:00 ** package 'crayon' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:04:00 ** R build 03-Oct-2018 12:04:00 ** inst build 03-Oct-2018 12:04:00 ** preparing package for lazy loading build 03-Oct-2018 12:04:00 ** help build 03-Oct-2018 12:04:00 *** installing help indices build 03-Oct-2018 12:04:00 ** building package indices build 03-Oct-2018 12:04:00 ** testing if installed package can be loaded build 03-Oct-2018 12:04:00 * DONE (crayon) build 03-Oct-2018 12:04:01 * installing *source* package 'rlang' ... build 03-Oct-2018 12:04:01 ** package 'rlang' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:04:01 ** libs build 03-Oct-2018 12:04:01 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./lib/ -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c capture.c -o capture.o build 03-Oct-2018 12:04:01 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./lib/ -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c export.c -o export.o build 03-Oct-2018 12:04:01 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./lib/ -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c internal.c -o internal.o build 03-Oct-2018 12:04:01 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I./lib/ -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lib.c -o lib.o build 03-Oct-2018 12:04:02 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o rlang.so capture.o export.o internal.o lib.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:04:02 installing to /usr/local/lib/R/site-library/rlang/libs build 03-Oct-2018 12:04:02 ** R build 03-Oct-2018 12:04:02 ** byte-compile and prepare package for lazy loading build 03-Oct-2018 12:04:03 ** help build 03-Oct-2018 12:04:04 *** installing help indices build 03-Oct-2018 12:04:04 *** copying figures build 03-Oct-2018 12:04:04 ** building package indices build 03-Oct-2018 12:04:05 ** testing if installed package can be loaded build 03-Oct-2018 12:04:05 * DONE (rlang) build 03-Oct-2018 12:04:05 * installing *source* package 'lazyeval' ... build 03-Oct-2018 12:04:05 ** package 'lazyeval' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:04:05 ** libs build 03-Oct-2018 12:04:05 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c expr.c -o expr.o build 03-Oct-2018 12:04:05 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:04:05 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c interp.c -o interp.o build 03-Oct-2018 12:04:05 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lazy.c -o lazy.o build 03-Oct-2018 12:04:05 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c name.c -o name.o build 03-Oct-2018 12:04:05 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o build 03-Oct-2018 12:04:05 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o lazyeval.so expr.o init.o interp.o lazy.o name.o utils.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:04:05 installing to /usr/local/lib/R/site-library/lazyeval/libs build 03-Oct-2018 12:04:05 ** R build 03-Oct-2018 12:04:05 ** inst build 03-Oct-2018 12:04:05 ** preparing package for lazy loading build 03-Oct-2018 12:04:05 ** help build 03-Oct-2018 12:04:06 *** installing help indices build 03-Oct-2018 12:04:06 ** building package indices build 03-Oct-2018 12:04:06 ** installing vignettes build 03-Oct-2018 12:04:06 ** testing if installed package can be loaded build 03-Oct-2018 12:04:06 * DONE (lazyeval) build 03-Oct-2018 12:04:06 * installing *source* package 'base64enc' ... build 03-Oct-2018 12:04:06 ** package 'base64enc' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:04:06 ** libs build 03-Oct-2018 12:04:06 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base64.c -o base64.o build 03-Oct-2018 12:04:06 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c uriencode.c -o uriencode.o build 03-Oct-2018 12:04:06 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8.c -o utf8.o build 03-Oct-2018 12:04:06 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o base64enc.so base64.o uriencode.o utf8.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:04:06 installing to /usr/local/lib/R/site-library/base64enc/libs build 03-Oct-2018 12:04:06 ** R build 03-Oct-2018 12:04:06 ** preparing package for lazy loading build 03-Oct-2018 12:04:06 ** help build 03-Oct-2018 12:04:06 *** installing help indices build 03-Oct-2018 12:04:06 ** building package indices build 03-Oct-2018 12:04:06 ** testing if installed package can be loaded build 03-Oct-2018 12:04:07 * DONE (base64enc) build 03-Oct-2018 12:04:07 * installing *source* package 'curl' ... build 03-Oct-2018 12:04:07 ** package 'curl' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:04:07 Found pkg-config cflags and libs! build 03-Oct-2018 12:04:07 Using PKG_CFLAGS= build 03-Oct-2018 12:04:07 Using PKG_LIBS=-lcurl build 03-Oct-2018 12:04:07 ** libs build 03-Oct-2018 12:04:07 rm -f curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o utils.o version.o winidn.o build 03-Oct-2018 12:04:07 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c callbacks.c -o callbacks.o build 03-Oct-2018 12:04:07 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c curl.c -o curl.o build 03-Oct-2018 12:04:07 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c download.c -o download.o build 03-Oct-2018 12:04:07 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c escape.c -o escape.o build 03-Oct-2018 12:04:07 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fetch.c -o fetch.o build 03-Oct-2018 12:04:07 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c form.c -o form.o build 03-Oct-2018 12:04:08 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c getdate.c -o getdate.o build 03-Oct-2018 12:04:08 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c handle.c -o handle.o build 03-Oct-2018 12:04:08 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ieproxy.c -o ieproxy.o build 03-Oct-2018 12:04:08 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:04:08 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c interrupt.c -o interrupt.o build 03-Oct-2018 12:04:08 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c multi.c -o multi.o build 03-Oct-2018 12:04:08 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nslookup.c -o nslookup.o build 03-Oct-2018 12:04:08 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c reflist.c -o reflist.o build 03-Oct-2018 12:04:08 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c split.c -o split.o build 03-Oct-2018 12:04:08 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ssl.c -o ssl.o build 03-Oct-2018 12:04:08 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o build 03-Oct-2018 12:04:09 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c version.c -o version.o build 03-Oct-2018 12:04:09 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c winidn.c -o winidn.o build 03-Oct-2018 12:04:09 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o utils.o version.o winidn.o -lcurl -L/usr/lib/R/lib -lR build 03-Oct-2018 12:04:09 installing to /usr/local/lib/R/site-library/curl/libs build 03-Oct-2018 12:04:09 ** R build 03-Oct-2018 12:04:09 ** data build 03-Oct-2018 12:04:09 *** moving datasets to lazyload DB build 03-Oct-2018 12:04:09 ** inst build 03-Oct-2018 12:04:09 ** preparing package for lazy loading build 03-Oct-2018 12:04:09 ** help build 03-Oct-2018 12:04:09 *** installing help indices build 03-Oct-2018 12:04:09 ** building package indices build 03-Oct-2018 12:04:09 ** installing vignettes build 03-Oct-2018 12:04:09 ** testing if installed package can be loaded build 03-Oct-2018 12:04:09 * DONE (curl) build 03-Oct-2018 12:04:10 * installing *source* package 'jsonlite' ... build 03-Oct-2018 12:04:10 ** package 'jsonlite' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:04:10 ** libs build 03-Oct-2018 12:04:10 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base64.c -o base64.o build 03-Oct-2018 12:04:10 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_array.c -o collapse_array.o build 03-Oct-2018 12:04:10 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_object.c -o collapse_object.o build 03-Oct-2018 12:04:10 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_pretty.c -o collapse_pretty.o build 03-Oct-2018 12:04:10 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c escape_chars.c -o escape_chars.o build 03-Oct-2018 12:04:10 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c integer64_to_na.c -o integer64_to_na.o build 03-Oct-2018 12:04:10 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_datelist.c -o is_datelist.o build 03-Oct-2018 12:04:10 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_recordlist.c -o is_recordlist.o build 03-Oct-2018 12:04:10 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_scalarlist.c -o is_scalarlist.o build 03-Oct-2018 12:04:10 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c modp_numtoa.c -o modp_numtoa.o build 03-Oct-2018 12:04:10 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c null_to_na.c -o null_to_na.o build 03-Oct-2018 12:04:10 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c num_to_char.c -o num_to_char.o build 03-Oct-2018 12:04:10 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c parse.c -o parse.o build 03-Oct-2018 12:04:10 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c prettify.c -o prettify.o build 03-Oct-2018 12:04:11 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c push_parser.c -o push_parser.o build 03-Oct-2018 12:04:11 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c r-base64.c -o r-base64.o build 03-Oct-2018 12:04:11 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c register.c -o register.o build 03-Oct-2018 12:04:11 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c row_collapse.c -o row_collapse.o build 03-Oct-2018 12:04:11 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transpose_list.c -o transpose_list.o build 03-Oct-2018 12:04:11 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c validate.c -o validate.o build 03-Oct-2018 12:04:11 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl.c -o yajl/yajl.o build 03-Oct-2018 12:04:11 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o build 03-Oct-2018 12:04:11 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_buf.c -o yajl/yajl_buf.o build 03-Oct-2018 12:04:11 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_encode.c -o yajl/yajl_encode.o build 03-Oct-2018 12:04:11 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_gen.c -o yajl/yajl_gen.o build 03-Oct-2018 12:04:11 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_lex.c -o yajl/yajl_lex.o build 03-Oct-2018 12:04:11 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_parser.c -o yajl/yajl_parser.o build 03-Oct-2018 12:04:12 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_tree.c -o yajl/yajl_tree.o build 03-Oct-2018 12:04:12 ar rcs libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o build 03-Oct-2018 12:04:12 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -L. -lstatyajl -L/usr/lib/R/lib -lR build 03-Oct-2018 12:04:12 installing to /usr/local/lib/R/site-library/jsonlite/libs build 03-Oct-2018 12:04:12 ** R build 03-Oct-2018 12:04:12 ** inst build 03-Oct-2018 12:04:12 ** preparing package for lazy loading build 03-Oct-2018 12:04:12 ** help build 03-Oct-2018 12:04:12 *** installing help indices build 03-Oct-2018 12:04:12 ** building package indices build 03-Oct-2018 12:04:12 ** installing vignettes build 03-Oct-2018 12:04:12 ** testing if installed package can be loaded build 03-Oct-2018 12:04:12 * DONE (jsonlite) build 03-Oct-2018 12:04:13 * installing *source* package 'magrittr' ... build 03-Oct-2018 12:04:13 ** package 'magrittr' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:04:13 ** R build 03-Oct-2018 12:04:13 ** inst build 03-Oct-2018 12:04:13 ** byte-compile and prepare package for lazy loading build 03-Oct-2018 12:04:13 ** help build 03-Oct-2018 12:04:13 *** installing help indices build 03-Oct-2018 12:04:13 ** building package indices build 03-Oct-2018 12:04:13 ** installing vignettes build 03-Oct-2018 12:04:13 ** testing if installed package can be loaded build 03-Oct-2018 12:04:13 * DONE (magrittr) build 03-Oct-2018 12:04:13 * installing *source* package 'deldir' ... build 03-Oct-2018 12:04:13 ** package 'deldir' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:04:13 ** libs build 03-Oct-2018 12:04:13 gfortran -fpic -g -O2 -fstack-protector-strong -c acchk.f -o acchk.o build 03-Oct-2018 12:04:13 gfortran -fpic -g -O2 -fstack-protector-strong -c addpt.f -o addpt.o build 03-Oct-2018 12:04:13 gfortran -fpic -g -O2 -fstack-protector-strong -c adjchk.f -o adjchk.o build 03-Oct-2018 12:04:13 gfortran -fpic -g -O2 -fstack-protector-strong -c binsrt.f -o binsrt.o build 03-Oct-2018 12:04:13 gfortran -fpic -g -O2 -fstack-protector-strong -c circen.f -o circen.o build 03-Oct-2018 12:04:13 gfortran -fpic -g -O2 -fstack-protector-strong -c cross.f -o cross.o build 03-Oct-2018 12:04:13 gfortran -fpic -g -O2 -fstack-protector-strong -c delet.f -o delet.o build 03-Oct-2018 12:04:13 gfortran -fpic -g -O2 -fstack-protector-strong -c delet1.f -o delet1.o build 03-Oct-2018 12:04:14 gfortran -fpic -g -O2 -fstack-protector-strong -c delout.f -o delout.o build 03-Oct-2018 12:04:14 gfortran -fpic -g -O2 -fstack-protector-strong -c delseg.f -o delseg.o build 03-Oct-2018 12:04:14 gfortran -fpic -g -O2 -fstack-protector-strong -c dirout.f -o dirout.o build 03-Oct-2018 12:04:14 gfortran -fpic -g -O2 -fstack-protector-strong -c dirseg.f -o dirseg.o build 03-Oct-2018 12:04:14 gfortran -fpic -g -O2 -fstack-protector-strong -c dldins.f -o dldins.o build 03-Oct-2018 12:04:14 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:04:14 gfortran -fpic -g -O2 -fstack-protector-strong -c initad.f -o initad.o build 03-Oct-2018 12:04:14 gfortran -fpic -g -O2 -fstack-protector-strong -c insrt.f -o insrt.o build 03-Oct-2018 12:04:14 gfortran -fpic -g -O2 -fstack-protector-strong -c insrt1.f -o insrt1.o build 03-Oct-2018 12:04:14 gfortran -fpic -g -O2 -fstack-protector-strong -c intri.f -o intri.o build 03-Oct-2018 12:04:14 gfortran -fpic -g -O2 -fstack-protector-strong -c locn.f -o locn.o build 03-Oct-2018 12:04:14 gfortran -fpic -g -O2 -fstack-protector-strong -c master.f -o master.o build 03-Oct-2018 12:04:14 gfortran -fpic -g -O2 -fstack-protector-strong -c mnnd.f -o mnnd.o build 03-Oct-2018 12:04:14 gfortran -fpic -g -O2 -fstack-protector-strong -c pred.f -o pred.o build 03-Oct-2018 12:04:14 gfortran -fpic -g -O2 -fstack-protector-strong -c qtest.f -o qtest.o build 03-Oct-2018 12:04:14 gfortran -fpic -g -O2 -fstack-protector-strong -c qtest1.f -o qtest1.o build 03-Oct-2018 12:04:14 gfortran -fpic -g -O2 -fstack-protector-strong -c stoke.f -o stoke.o build 03-Oct-2018 12:04:14 gfortran -fpic -g -O2 -fstack-protector-strong -c succ.f -o succ.o build 03-Oct-2018 12:04:14 gfortran -fpic -g -O2 -fstack-protector-strong -c swap.f -o swap.o build 03-Oct-2018 12:04:14 gfortran -fpic -g -O2 -fstack-protector-strong -c testeq.f -o testeq.o build 03-Oct-2018 12:04:14 gfortran -fpic -g -O2 -fstack-protector-strong -c triar.f -o triar.o build 03-Oct-2018 12:04:14 gfortran -fpic -g -O2 -fstack-protector-strong -c trifnd.f -o trifnd.o build 03-Oct-2018 12:04:14 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o deldir.so acchk.o addpt.o adjchk.o binsrt.o circen.o cross.o delet.o delet1.o delout.o delseg.o dirout.o dirseg.o dldins.o init.o initad.o insrt.o insrt1.o intri.o locn.o master.o mnnd.o pred.o qtest.o qtest1.o stoke.o succ.o swap.o testeq.o triar.o trifnd.o -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR build 03-Oct-2018 12:04:14 installing to /usr/local/lib/R/site-library/deldir/libs build 03-Oct-2018 12:04:14 ** R build 03-Oct-2018 12:04:14 ** data build 03-Oct-2018 12:04:14 *** moving datasets to lazyload DB build 03-Oct-2018 12:04:14 ** inst build 03-Oct-2018 12:04:14 ** byte-compile and prepare package for lazy loading build 03-Oct-2018 12:04:15 ** help build 03-Oct-2018 12:04:15 *** installing help indices build 03-Oct-2018 12:04:15 ** building package indices build 03-Oct-2018 12:04:15 ** testing if installed package can be loaded build 03-Oct-2018 12:04:15 * DONE (deldir) build 03-Oct-2018 12:04:15 * installing *source* package 'orientlib' ... build 03-Oct-2018 12:04:15 ** package 'orientlib' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:04:15 ** R build 03-Oct-2018 12:04:15 ** inst build 03-Oct-2018 12:04:15 ** preparing package for lazy loading build 03-Oct-2018 12:04:16 Creating a generic function for 't' from package 'base' in package 'orientlib' build 03-Oct-2018 12:04:16 Creating a generic function for 'mean' from package 'base' in package 'orientlib' build 03-Oct-2018 12:04:16 Creating a generic function for 'weighted.mean' from package 'stats' in package 'orientlib' build 03-Oct-2018 12:04:16 Creating a generic function from function 'rotmatrix' in package 'orientlib' build 03-Oct-2018 12:04:16 Creating a generic function from function 'rotvector' in package 'orientlib' build 03-Oct-2018 12:04:16 Creating a generic function from function 'eulerzyx' in package 'orientlib' build 03-Oct-2018 12:04:16 Creating a generic function from function 'quaternion' in package 'orientlib' build 03-Oct-2018 12:04:16 Creating a generic function from function 'skewvector' in package 'orientlib' build 03-Oct-2018 12:04:16 Creating a generic function from function 'skewmatrix' in package 'orientlib' build 03-Oct-2018 12:04:16 Creating a generic function from function 'eulerzxz' in package 'orientlib' build 03-Oct-2018 12:04:16 ** help build 03-Oct-2018 12:04:16 *** installing help indices build 03-Oct-2018 12:04:16 ** building package indices build 03-Oct-2018 12:04:16 ** testing if installed package can be loaded build 03-Oct-2018 12:04:16 * DONE (orientlib) build 03-Oct-2018 12:04:16 * installing *source* package 'misc3d' ... build 03-Oct-2018 12:04:16 ** package 'misc3d' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:04:16 ** R build 03-Oct-2018 12:04:16 ** data build 03-Oct-2018 12:04:16 ** demo build 03-Oct-2018 12:04:16 ** inst build 03-Oct-2018 12:04:16 ** preparing package for lazy loading build 03-Oct-2018 12:04:16 ** help build 03-Oct-2018 12:04:16 *** installing help indices build 03-Oct-2018 12:04:17 ** building package indices build 03-Oct-2018 12:04:17 ** testing if installed package can be loaded build 03-Oct-2018 12:04:17 * DONE (misc3d) build 03-Oct-2018 12:04:17 * installing *source* package 'rstudioapi' ... build 03-Oct-2018 12:04:17 ** package 'rstudioapi' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:04:17 ** R build 03-Oct-2018 12:04:17 ** inst build 03-Oct-2018 12:04:17 ** preparing package for lazy loading build 03-Oct-2018 12:04:17 ** help build 03-Oct-2018 12:04:17 *** installing help indices build 03-Oct-2018 12:04:17 ** building package indices build 03-Oct-2018 12:04:17 ** installing vignettes build 03-Oct-2018 12:04:17 ** testing if installed package can be loaded build 03-Oct-2018 12:04:18 * DONE (rstudioapi) build 03-Oct-2018 12:04:18 * installing *source* package 'munsell' ... build 03-Oct-2018 12:04:18 ** package 'munsell' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:04:18 ** R build 03-Oct-2018 12:04:18 ** inst build 03-Oct-2018 12:04:18 ** preparing package for lazy loading build 03-Oct-2018 12:04:18 ** help build 03-Oct-2018 12:04:18 *** installing help indices build 03-Oct-2018 12:04:18 *** copying figures build 03-Oct-2018 12:04:18 ** building package indices build 03-Oct-2018 12:04:18 ** testing if installed package can be loaded build 03-Oct-2018 12:04:19 * DONE (munsell) build 03-Oct-2018 12:04:19 * installing *source* package 'cli' ... build 03-Oct-2018 12:04:19 ** package 'cli' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:04:19 ** R build 03-Oct-2018 12:04:19 ** inst build 03-Oct-2018 12:04:19 ** preparing package for lazy loading build 03-Oct-2018 12:04:19 ** help build 03-Oct-2018 12:04:19 *** installing help indices build 03-Oct-2018 12:04:19 *** copying figures build 03-Oct-2018 12:04:19 ** building package indices build 03-Oct-2018 12:04:19 ** testing if installed package can be loaded build 03-Oct-2018 12:04:19 * DONE (cli) build 03-Oct-2018 12:04:19 * installing *source* package 'processx' ... build 03-Oct-2018 12:04:19 ** package 'processx' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:04:19 ** libs build 03-Oct-2018 12:04:20 gcc -std=gnu99 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall tools/px.c -o tools/px build 03-Oct-2018 12:04:20 gcc -std=gnu99 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g supervisor/supervisor.c supervisor/utils.c \ build 03-Oct-2018 12:04:20 -o supervisor/supervisor build 03-Oct-2018 12:04:20 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:04:20 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c poll.c -o poll.o build 03-Oct-2018 12:04:20 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c processx-connection.c -o processx-connection.o build 03-Oct-2018 12:04:20 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c processx-vector.c -o processx-vector.o build 03-Oct-2018 12:04:20 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c create-time.c -o create-time.o build 03-Oct-2018 12:04:20 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix/childlist.c -o unix/childlist.o build 03-Oct-2018 12:04:21 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix/connection.c -o unix/connection.o build 03-Oct-2018 12:04:21 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix/processx.c -o unix/processx.o build 03-Oct-2018 12:04:21 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix/sigchld.c -o unix/sigchld.o build 03-Oct-2018 12:04:21 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix/utils.c -o unix/utils.o build 03-Oct-2018 12:04:21 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix/named_pipe.c -o unix/named_pipe.o build 03-Oct-2018 12:04:21 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o processx.so init.o poll.o processx-connection.o processx-vector.o create-time.o unix/childlist.o unix/connection.o unix/processx.o unix/sigchld.o unix/utils.o unix/named_pipe.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:04:21 installing via 'install.libs.R' to /usr/local/lib/R/site-library/processx build 03-Oct-2018 12:04:21 ** R build 03-Oct-2018 12:04:21 ** inst build 03-Oct-2018 12:04:21 ** preparing package for lazy loading build 03-Oct-2018 12:04:21 ** help build 03-Oct-2018 12:04:21 *** installing help indices build 03-Oct-2018 12:04:21 ** building package indices build 03-Oct-2018 12:04:21 ** testing if installed package can be loaded build 03-Oct-2018 12:04:21 * DONE (processx) build 03-Oct-2018 12:04:22 * installing *source* package 'plyr' ... build 03-Oct-2018 12:04:22 ** package 'plyr' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:04:22 ** libs build 03-Oct-2018 12:04:22 g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o build 03-Oct-2018 12:04:25 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c loop_apply.c -o loop_apply.o build 03-Oct-2018 12:04:25 g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c split-numeric.cpp -o split-numeric.o build 03-Oct-2018 12:04:28 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o plyr.so RcppExports.o loop_apply.o split-numeric.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:04:28 installing to /usr/local/lib/R/site-library/plyr/libs build 03-Oct-2018 12:04:28 ** R build 03-Oct-2018 12:04:28 ** data build 03-Oct-2018 12:04:28 *** moving datasets to lazyload DB build 03-Oct-2018 12:04:28 ** inst build 03-Oct-2018 12:04:28 ** preparing package for lazy loading build 03-Oct-2018 12:04:28 ** help build 03-Oct-2018 12:04:29 *** installing help indices build 03-Oct-2018 12:04:29 ** building package indices build 03-Oct-2018 12:04:29 ** testing if installed package can be loaded build 03-Oct-2018 12:04:29 * DONE (plyr) build 03-Oct-2018 12:04:29 * installing *source* package 'markdown' ... build 03-Oct-2018 12:04:29 ** package 'markdown' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:04:29 ** libs build 03-Oct-2018 12:04:29 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rbase64.c -o Rbase64.o build 03-Oct-2018 12:04:30 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rinit.c -o Rinit.o build 03-Oct-2018 12:04:30 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rmarkdown.c -o Rmarkdown.o build 03-Oct-2018 12:04:30 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c autolink.c -o autolink.o build 03-Oct-2018 12:04:30 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c buffer.c -o buffer.o build 03-Oct-2018 12:04:30 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c houdini_href_e.c -o houdini_href_e.o build 03-Oct-2018 12:04:30 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c houdini_html_e.c -o houdini_html_e.o build 03-Oct-2018 12:04:30 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c html.c -o html.o build 03-Oct-2018 12:04:30 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c html_smartypants.c -o html_smartypants.o build 03-Oct-2018 12:04:30 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c markdown.c -o markdown.o build 03-Oct-2018 12:04:31 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stack.c -o stack.o build 03-Oct-2018 12:04:31 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o markdown.so Rbase64.o Rinit.o Rmarkdown.o autolink.o buffer.o houdini_href_e.o houdini_html_e.o html.o html_smartypants.o markdown.o stack.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:04:31 installing to /usr/local/lib/R/site-library/markdown/libs build 03-Oct-2018 12:04:31 ** R build 03-Oct-2018 12:04:31 ** inst build 03-Oct-2018 12:04:31 ** preparing package for lazy loading build 03-Oct-2018 12:04:31 ** help build 03-Oct-2018 12:04:32 *** installing help indices build 03-Oct-2018 12:04:32 ** building package indices build 03-Oct-2018 12:04:32 ** installing vignettes build 03-Oct-2018 12:04:32 ** testing if installed package can be loaded build 03-Oct-2018 12:04:32 * DONE (markdown) build 03-Oct-2018 12:04:32 * installing *source* package 'stringr' ... build 03-Oct-2018 12:04:32 ** package 'stringr' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:04:32 ** R build 03-Oct-2018 12:04:32 ** data build 03-Oct-2018 12:04:32 *** moving datasets to lazyload DB build 03-Oct-2018 12:04:32 ** inst build 03-Oct-2018 12:04:32 ** preparing package for lazy loading build 03-Oct-2018 12:04:32 ** help build 03-Oct-2018 12:04:32 *** installing help indices build 03-Oct-2018 12:04:32 *** copying figures build 03-Oct-2018 12:04:32 ** building package indices build 03-Oct-2018 12:04:32 ** installing vignettes build 03-Oct-2018 12:04:32 ** testing if installed package can be loaded build 03-Oct-2018 12:04:33 * DONE (stringr) build 03-Oct-2018 12:04:33 * installing *source* package 'later' ... build 03-Oct-2018 12:04:33 ** package 'later' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:04:33 Running configure script build 03-Oct-2018 12:04:33 Using CC=gcc -std=gnu99 build 03-Oct-2018 12:04:33 Using CFLAGS=-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g build 03-Oct-2018 12:04:33 Using CPPFLAGS= build 03-Oct-2018 12:04:33 C11-style threads.h support not detected. Using tinycthread library. build 03-Oct-2018 12:04:33 ** libs build 03-Oct-2018 12:04:33 g++ -I/usr/share/R/include -DNDEBUG -pthread -DTHREADS_H_SUPPORT=-1 -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o build 03-Oct-2018 12:04:36 g++ -I/usr/share/R/include -DNDEBUG -pthread -DTHREADS_H_SUPPORT=-1 -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c callback_registry.cpp -o callback_registry.o build 03-Oct-2018 12:04:41 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -pthread -DTHREADS_H_SUPPORT=-1 -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:04:41 g++ -I/usr/share/R/include -DNDEBUG -pthread -DTHREADS_H_SUPPORT=-1 -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c later.cpp -o later.o build 03-Oct-2018 12:04:44 g++ -I/usr/share/R/include -DNDEBUG -pthread -DTHREADS_H_SUPPORT=-1 -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c later_native.cpp -o later_native.o build 03-Oct-2018 12:04:46 g++ -I/usr/share/R/include -DNDEBUG -pthread -DTHREADS_H_SUPPORT=-1 -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c later_posix.cpp -o later_posix.o build 03-Oct-2018 12:04:49 later_posix.cpp: In function 'void deInitialize()': build 03-Oct-2018 12:04:49 later_posix.cpp:187:33: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] build 03-Oct-2018 12:04:49 write(dummy_pipe_in, "a", 1); build 03-Oct-2018 12:04:49 ^ build 03-Oct-2018 12:04:49 g++ -I/usr/share/R/include -DNDEBUG -pthread -DTHREADS_H_SUPPORT=-1 -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c later_win32.cpp -o later_win32.o build 03-Oct-2018 12:04:49 g++ -I/usr/share/R/include -DNDEBUG -pthread -DTHREADS_H_SUPPORT=-1 -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c timer_posix.cpp -o timer_posix.o build 03-Oct-2018 12:04:50 g++ -I/usr/share/R/include -DNDEBUG -pthread -DTHREADS_H_SUPPORT=-1 -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c timestamp_unix.cpp -o timestamp_unix.o build 03-Oct-2018 12:04:50 g++ -I/usr/share/R/include -DNDEBUG -pthread -DTHREADS_H_SUPPORT=-1 -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c timestamp_win32.cpp -o timestamp_win32.o build 03-Oct-2018 12:04:50 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -pthread -DTHREADS_H_SUPPORT=-1 -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tinycthread/tinycthread.c -o tinycthread/tinycthread.o build 03-Oct-2018 12:04:51 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o later.so RcppExports.o callback_registry.o init.o later.o later_native.o later_posix.o later_win32.o timer_posix.o timestamp_unix.o timestamp_win32.o -pthread ./tinycthread/tinycthread.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:04:51 installing to /usr/local/lib/R/site-library/later/libs build 03-Oct-2018 12:04:51 ** R build 03-Oct-2018 12:04:51 ** inst build 03-Oct-2018 12:04:51 ** preparing package for lazy loading build 03-Oct-2018 12:04:51 Warning: replacing previous import by 'Rcpp::evalCpp' when loading 'later' build 03-Oct-2018 12:04:51 ** help build 03-Oct-2018 12:04:51 *** installing help indices build 03-Oct-2018 12:04:51 ** building package indices build 03-Oct-2018 12:04:51 ** installing vignettes build 03-Oct-2018 12:04:51 ** testing if installed package can be loaded build 03-Oct-2018 12:04:51 Warning: replacing previous import by 'Rcpp::evalCpp' when loading 'later' build 03-Oct-2018 12:04:51 * DONE (later) build 03-Oct-2018 12:04:51 * installing *source* package 'rprojroot' ... build 03-Oct-2018 12:04:51 ** package 'rprojroot' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:04:51 ** R build 03-Oct-2018 12:04:51 ** inst build 03-Oct-2018 12:04:51 ** preparing package for lazy loading build 03-Oct-2018 12:04:51 ** help build 03-Oct-2018 12:04:51 *** installing help indices build 03-Oct-2018 12:04:51 ** building package indices build 03-Oct-2018 12:04:51 ** installing vignettes build 03-Oct-2018 12:04:51 ** testing if installed package can be loaded build 03-Oct-2018 12:04:52 * DONE (rprojroot) build 03-Oct-2018 12:04:52 * installing *source* package 'tinytex' ... build 03-Oct-2018 12:04:52 ** package 'tinytex' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:04:52 ** R build 03-Oct-2018 12:04:52 ** preparing package for lazy loading build 03-Oct-2018 12:04:52 ** help build 03-Oct-2018 12:04:52 *** installing help indices build 03-Oct-2018 12:04:52 ** building package indices build 03-Oct-2018 12:04:52 ** testing if installed package can be loaded build 03-Oct-2018 12:04:52 * DONE (tinytex) build 03-Oct-2018 12:04:52 * installing *source* package 'htmltools' ... build 03-Oct-2018 12:04:52 ** package 'htmltools' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:04:52 ** libs build 03-Oct-2018 12:04:52 g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o build 03-Oct-2018 12:04:55 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:04:56 g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c template.cpp -o template.o build 03-Oct-2018 12:04:58 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o htmltools.so RcppExports.o init.o template.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:04:58 installing to /usr/local/lib/R/site-library/htmltools/libs build 03-Oct-2018 12:04:58 ** R build 03-Oct-2018 12:04:58 ** preparing package for lazy loading build 03-Oct-2018 12:04:59 ** help build 03-Oct-2018 12:04:59 *** installing help indices build 03-Oct-2018 12:04:59 ** building package indices build 03-Oct-2018 12:04:59 ** testing if installed package can be loaded build 03-Oct-2018 12:04:59 * DONE (htmltools) build 03-Oct-2018 12:05:00 * installing *source* package 'pillar' ... build 03-Oct-2018 12:05:00 ** package 'pillar' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:05:00 ** R build 03-Oct-2018 12:05:00 ** preparing package for lazy loading build 03-Oct-2018 12:05:00 ** help build 03-Oct-2018 12:05:00 *** installing help indices build 03-Oct-2018 12:05:00 *** copying figures build 03-Oct-2018 12:05:00 ** building package indices build 03-Oct-2018 12:05:00 ** testing if installed package can be loaded build 03-Oct-2018 12:05:00 * DONE (pillar) build 03-Oct-2018 12:05:00 * installing *source* package 'reshape2' ... build 03-Oct-2018 12:05:00 ** package 'reshape2' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:05:00 ** libs build 03-Oct-2018 12:05:00 g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o build 03-Oct-2018 12:05:04 g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c melt.cpp -o melt.o build 03-Oct-2018 12:05:08 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o reshape2.so RcppExports.o melt.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:05:08 installing to /usr/local/lib/R/site-library/reshape2/libs build 03-Oct-2018 12:05:08 ** R build 03-Oct-2018 12:05:08 ** data build 03-Oct-2018 12:05:08 *** moving datasets to lazyload DB build 03-Oct-2018 12:05:08 ** inst build 03-Oct-2018 12:05:08 ** preparing package for lazy loading build 03-Oct-2018 12:05:08 ** help build 03-Oct-2018 12:05:08 *** installing help indices build 03-Oct-2018 12:05:08 ** building package indices build 03-Oct-2018 12:05:08 ** testing if installed package can be loaded build 03-Oct-2018 12:05:08 * DONE (reshape2) build 03-Oct-2018 12:05:09 * installing *source* package 'scales' ... build 03-Oct-2018 12:05:09 ** package 'scales' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:05:09 ** libs build 03-Oct-2018 12:05:09 g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o build 03-Oct-2018 12:05:12 g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c colors.cpp -o colors.o build 03-Oct-2018 12:05:15 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o scales.so RcppExports.o colors.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:05:15 installing to /usr/local/lib/R/site-library/scales/libs build 03-Oct-2018 12:05:15 ** R build 03-Oct-2018 12:05:15 ** preparing package for lazy loading build 03-Oct-2018 12:05:15 ** help build 03-Oct-2018 12:05:15 *** installing help indices build 03-Oct-2018 12:05:15 *** copying figures build 03-Oct-2018 12:05:15 ** building package indices build 03-Oct-2018 12:05:15 ** testing if installed package can be loaded build 03-Oct-2018 12:05:16 * DONE (scales) build 03-Oct-2018 12:05:16 * installing *source* package 'callr' ... build 03-Oct-2018 12:05:16 ** package 'callr' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:05:16 ** R build 03-Oct-2018 12:05:16 ** inst build 03-Oct-2018 12:05:16 ** preparing package for lazy loading build 03-Oct-2018 12:05:16 ** help build 03-Oct-2018 12:05:16 *** installing help indices build 03-Oct-2018 12:05:16 ** building package indices build 03-Oct-2018 12:05:16 ** testing if installed package can be loaded build 03-Oct-2018 12:05:16 * DONE (callr) build 03-Oct-2018 12:05:16 * installing *source* package 'evaluate' ... build 03-Oct-2018 12:05:16 ** package 'evaluate' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:05:16 ** R build 03-Oct-2018 12:05:16 ** preparing package for lazy loading build 03-Oct-2018 12:05:17 ** help build 03-Oct-2018 12:05:17 *** installing help indices build 03-Oct-2018 12:05:17 ** building package indices build 03-Oct-2018 12:05:17 ** testing if installed package can be loaded build 03-Oct-2018 12:05:17 * DONE (evaluate) build 03-Oct-2018 12:05:17 * installing *source* package 'promises' ... build 03-Oct-2018 12:05:17 ** package 'promises' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:05:17 ** libs build 03-Oct-2018 12:05:17 g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/later/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o build 03-Oct-2018 12:05:20 g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/later/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c promise_task.cpp -o promise_task.o build 03-Oct-2018 12:05:23 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o promises.so RcppExports.o promise_task.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:05:23 installing to /usr/local/lib/R/site-library/promises/libs build 03-Oct-2018 12:05:23 ** R build 03-Oct-2018 12:05:23 ** inst build 03-Oct-2018 12:05:23 ** preparing package for lazy loading build 03-Oct-2018 12:05:23 Warning: replacing previous import by 'Rcpp::evalCpp' when loading 'later' build 03-Oct-2018 12:05:23 ** help build 03-Oct-2018 12:05:23 *** installing help indices build 03-Oct-2018 12:05:23 ** building package indices build 03-Oct-2018 12:05:23 ** installing vignettes build 03-Oct-2018 12:05:23 ** testing if installed package can be loaded build 03-Oct-2018 12:05:23 Warning: replacing previous import by 'Rcpp::evalCpp' when loading 'later' build 03-Oct-2018 12:05:23 * DONE (promises) build 03-Oct-2018 12:05:24 * installing *source* package 'htmlwidgets' ... build 03-Oct-2018 12:05:24 ** package 'htmlwidgets' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:05:24 ** R build 03-Oct-2018 12:05:24 ** inst build 03-Oct-2018 12:05:24 ** preparing package for lazy loading build 03-Oct-2018 12:05:24 Failed with error: 'there is no package called 'shiny'' build 03-Oct-2018 12:05:24 ** help build 03-Oct-2018 12:05:24 *** installing help indices build 03-Oct-2018 12:05:24 ** building package indices build 03-Oct-2018 12:05:24 ** installing vignettes build 03-Oct-2018 12:05:24 ** testing if installed package can be loaded build 03-Oct-2018 12:05:24 * DONE (htmlwidgets) build 03-Oct-2018 12:05:24 * installing *source* package 'tibble' ... build 03-Oct-2018 12:05:24 ** package 'tibble' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:05:24 ** libs build 03-Oct-2018 12:05:24 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coerce.c -o coerce.o build 03-Oct-2018 12:05:25 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:05:25 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c matrixToDataFrame.c -o matrixToDataFrame.o build 03-Oct-2018 12:05:25 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o tibble.so coerce.o init.o matrixToDataFrame.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:05:25 installing to /usr/local/lib/R/site-library/tibble/libs build 03-Oct-2018 12:05:25 ** R build 03-Oct-2018 12:05:25 ** inst build 03-Oct-2018 12:05:25 ** preparing package for lazy loading build 03-Oct-2018 12:05:25 ** help build 03-Oct-2018 12:05:25 *** installing help indices build 03-Oct-2018 12:05:25 *** copying figures build 03-Oct-2018 12:05:25 ** building package indices build 03-Oct-2018 12:05:25 ** installing vignettes build 03-Oct-2018 12:05:25 ** testing if installed package can be loaded build 03-Oct-2018 12:05:25 * DONE (tibble) build 03-Oct-2018 12:05:26 * installing *source* package 'httpuv' ... build 03-Oct-2018 12:05:26 ** package 'httpuv' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:05:26 ** libs build 03-Oct-2018 12:05:26 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -pthread -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/later/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports-legacy.cpp -o RcppExports-legacy.o build 03-Oct-2018 12:05:30 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -pthread -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/later/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o build 03-Oct-2018 12:05:35 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -pthread -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/later/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c callback.cpp -o callback.o build 03-Oct-2018 12:05:36 In file included from /usr/local/lib/R/site-library/BH/include/boost/bind/mem_fn.hpp:25:0, build 03-Oct-2018 12:05:36 from /usr/local/lib/R/site-library/BH/include/boost/mem_fn.hpp:22, build 03-Oct-2018 12:05:36 from /usr/local/lib/R/site-library/BH/include/boost/function/detail/prologue.hpp:18, build 03-Oct-2018 12:05:36 from /usr/local/lib/R/site-library/BH/include/boost/function.hpp:30, build 03-Oct-2018 12:05:36 from callback.h:4, build 03-Oct-2018 12:05:36 from callback.cpp:1: build 03-Oct-2018 12:05:36 /usr/local/lib/R/site-library/BH/include/boost/get_pointer.hpp:48:40: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:05:36 template T * get_pointer(std::auto_ptr const& p) build 03-Oct-2018 12:05:36 ^ build 03-Oct-2018 12:05:36 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:05:36 from /usr/local/lib/R/site-library/BH/include/boost/function/function_base.hpp:16, build 03-Oct-2018 12:05:36 from /usr/local/lib/R/site-library/BH/include/boost/function/detail/prologue.hpp:17, build 03-Oct-2018 12:05:36 from /usr/local/lib/R/site-library/BH/include/boost/function.hpp:30, build 03-Oct-2018 12:05:36 from callback.h:4, build 03-Oct-2018 12:05:36 from callback.cpp:1: build 03-Oct-2018 12:05:36 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:05:36 template class auto_ptr; build 03-Oct-2018 12:05:36 ^ build 03-Oct-2018 12:05:38 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -pthread -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/later/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c callbackqueue.cpp -o callbackqueue.o build 03-Oct-2018 12:05:39 In file included from /usr/local/lib/R/site-library/BH/include/boost/bind/mem_fn.hpp:25:0, build 03-Oct-2018 12:05:39 from /usr/local/lib/R/site-library/BH/include/boost/mem_fn.hpp:22, build 03-Oct-2018 12:05:39 from /usr/local/lib/R/site-library/BH/include/boost/function/detail/prologue.hpp:18, build 03-Oct-2018 12:05:39 from /usr/local/lib/R/site-library/BH/include/boost/function.hpp:30, build 03-Oct-2018 12:05:39 from callbackqueue.h:5, build 03-Oct-2018 12:05:39 from callbackqueue.cpp:1: build 03-Oct-2018 12:05:39 /usr/local/lib/R/site-library/BH/include/boost/get_pointer.hpp:48:40: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:05:39 template T * get_pointer(std::auto_ptr const& p) build 03-Oct-2018 12:05:39 ^ build 03-Oct-2018 12:05:39 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:05:39 from /usr/local/lib/R/site-library/BH/include/boost/function/function_base.hpp:16, build 03-Oct-2018 12:05:39 from /usr/local/lib/R/site-library/BH/include/boost/function/detail/prologue.hpp:17, build 03-Oct-2018 12:05:39 from /usr/local/lib/R/site-library/BH/include/boost/function.hpp:30, build 03-Oct-2018 12:05:39 from callbackqueue.h:5, build 03-Oct-2018 12:05:39 from callbackqueue.cpp:1: build 03-Oct-2018 12:05:39 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:05:39 template class auto_ptr; build 03-Oct-2018 12:05:39 ^ build 03-Oct-2018 12:05:40 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -pthread -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/later/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c filedatasource-unix.cpp -o filedatasource-unix.o build 03-Oct-2018 12:05:43 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -pthread -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/later/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c filedatasource-win.cpp -o filedatasource-win.o build 03-Oct-2018 12:05:43 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -pthread -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/later/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c http.cpp -o http.o build 03-Oct-2018 12:05:43 In file included from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0, build 03-Oct-2018 12:05:43 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:05:43 from http.h:5, build 03-Oct-2018 12:05:43 from http.cpp:1: build 03-Oct-2018 12:05:43 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:355:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:05:43 explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) build 03-Oct-2018 12:05:43 ^ build 03-Oct-2018 12:05:43 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:05:43 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:05:43 from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:23, build 03-Oct-2018 12:05:43 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:05:43 from http.h:5, build 03-Oct-2018 12:05:43 from http.cpp:1: build 03-Oct-2018 12:05:43 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:05:43 template class auto_ptr; build 03-Oct-2018 12:05:43 ^ build 03-Oct-2018 12:05:44 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:05:44 from http.h:5, build 03-Oct-2018 12:05:44 from http.cpp:1: build 03-Oct-2018 12:05:44 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:05:44 template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R > build 03-Oct-2018 12:05:44 ^ build 03-Oct-2018 12:05:44 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:05:44 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:05:44 from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:23, build 03-Oct-2018 12:05:44 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:05:44 from http.h:5, build 03-Oct-2018 12:05:44 from http.cpp:1: build 03-Oct-2018 12:05:44 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:05:44 template class auto_ptr; build 03-Oct-2018 12:05:44 ^ build 03-Oct-2018 12:05:44 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:05:44 from http.h:5, build 03-Oct-2018 12:05:44 from http.cpp:1: build 03-Oct-2018 12:05:44 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:05:44 explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() build 03-Oct-2018 12:05:44 ^ build 03-Oct-2018 12:05:44 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:05:44 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:05:44 from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:23, build 03-Oct-2018 12:05:44 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:05:44 from http.h:5, build 03-Oct-2018 12:05:44 from http.cpp:1: build 03-Oct-2018 12:05:44 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:05:44 template class auto_ptr; build 03-Oct-2018 12:05:44 ^ build 03-Oct-2018 12:05:44 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:05:44 from http.h:5, build 03-Oct-2018 12:05:44 from http.cpp:1: build 03-Oct-2018 12:05:44 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:05:44 shared_ptr( std::auto_ptr && r ): px(r.get()), pn() build 03-Oct-2018 12:05:44 ^ build 03-Oct-2018 12:05:44 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:05:44 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:05:44 from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:23, build 03-Oct-2018 12:05:44 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:05:44 from http.h:5, build 03-Oct-2018 12:05:44 from http.cpp:1: build 03-Oct-2018 12:05:44 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:05:44 template class auto_ptr; build 03-Oct-2018 12:05:44 ^ build 03-Oct-2018 12:05:44 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:05:44 from http.h:5, build 03-Oct-2018 12:05:44 from http.cpp:1: build 03-Oct-2018 12:05:44 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:05:44 shared_ptr & operator=( std::auto_ptr & r ) build 03-Oct-2018 12:05:44 ^ build 03-Oct-2018 12:05:44 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:05:44 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:05:44 from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:23, build 03-Oct-2018 12:05:44 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:05:44 from http.h:5, build 03-Oct-2018 12:05:44 from http.cpp:1: build 03-Oct-2018 12:05:44 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:05:44 template class auto_ptr; build 03-Oct-2018 12:05:44 ^ build 03-Oct-2018 12:05:44 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:05:44 from http.h:5, build 03-Oct-2018 12:05:44 from http.cpp:1: build 03-Oct-2018 12:05:44 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:05:44 shared_ptr & operator=( std::auto_ptr && r ) build 03-Oct-2018 12:05:44 ^ build 03-Oct-2018 12:05:44 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:05:44 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:05:44 from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:23, build 03-Oct-2018 12:05:44 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:05:44 from http.h:5, build 03-Oct-2018 12:05:44 from http.cpp:1: build 03-Oct-2018 12:05:44 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:05:44 template class auto_ptr; build 03-Oct-2018 12:05:44 ^ build 03-Oct-2018 12:05:44 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:05:44 from http.h:5, build 03-Oct-2018 12:05:44 from http.cpp:1: build 03-Oct-2018 12:05:44 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)': build 03-Oct-2018 12:05:44 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:05:44 this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); build 03-Oct-2018 12:05:44 ^ build 03-Oct-2018 12:05:44 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:05:44 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:05:44 from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:23, build 03-Oct-2018 12:05:44 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:05:44 from http.h:5, build 03-Oct-2018 12:05:44 from http.cpp:1: build 03-Oct-2018 12:05:44 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:05:44 template class auto_ptr; build 03-Oct-2018 12:05:44 ^ build 03-Oct-2018 12:05:44 In file included from /usr/local/lib/R/site-library/BH/include/boost/bind/mem_fn.hpp:25:0, build 03-Oct-2018 12:05:44 from /usr/local/lib/R/site-library/BH/include/boost/mem_fn.hpp:22, build 03-Oct-2018 12:05:44 from /usr/local/lib/R/site-library/BH/include/boost/bind/bind.hpp:26, build 03-Oct-2018 12:05:44 from /usr/local/lib/R/site-library/BH/include/boost/bind.hpp:22, build 03-Oct-2018 12:05:44 from http.h:6, build 03-Oct-2018 12:05:44 from http.cpp:1: build 03-Oct-2018 12:05:44 /usr/local/lib/R/site-library/BH/include/boost/get_pointer.hpp: At global scope: build 03-Oct-2018 12:05:44 /usr/local/lib/R/site-library/BH/include/boost/get_pointer.hpp:48:40: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:05:44 template T * get_pointer(std::auto_ptr const& p) build 03-Oct-2018 12:05:44 ^ build 03-Oct-2018 12:05:44 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:05:44 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:05:44 from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:23, build 03-Oct-2018 12:05:44 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:05:44 from http.h:5, build 03-Oct-2018 12:05:44 from http.cpp:1: build 03-Oct-2018 12:05:44 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:05:44 template class auto_ptr; build 03-Oct-2018 12:05:44 ^ build 03-Oct-2018 12:05:47 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -pthread -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/later/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c httprequest.cpp -o httprequest.o build 03-Oct-2018 12:05:48 In file included from /usr/local/lib/R/site-library/BH/include/boost/bind/mem_fn.hpp:25:0, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/mem_fn.hpp:22, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/bind/bind.hpp:26, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/bind.hpp:22, build 03-Oct-2018 12:05:48 from httprequest.cpp:1: build 03-Oct-2018 12:05:48 /usr/local/lib/R/site-library/BH/include/boost/get_pointer.hpp:48:40: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:05:48 template T * get_pointer(std::auto_ptr const& p) build 03-Oct-2018 12:05:48 ^ build 03-Oct-2018 12:05:48 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/get_pointer.hpp:14, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/bind/mem_fn.hpp:25, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/mem_fn.hpp:22, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/bind/bind.hpp:26, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/bind.hpp:22, build 03-Oct-2018 12:05:48 from httprequest.cpp:1: build 03-Oct-2018 12:05:48 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:05:48 template class auto_ptr; build 03-Oct-2018 12:05:48 ^ build 03-Oct-2018 12:05:48 In file included from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:05:48 from httprequest.cpp:2: build 03-Oct-2018 12:05:48 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:355:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:05:48 explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) build 03-Oct-2018 12:05:48 ^ build 03-Oct-2018 12:05:48 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/get_pointer.hpp:14, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/bind/mem_fn.hpp:25, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/mem_fn.hpp:22, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/bind/bind.hpp:26, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/bind.hpp:22, build 03-Oct-2018 12:05:48 from httprequest.cpp:1: build 03-Oct-2018 12:05:48 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:05:48 template class auto_ptr; build 03-Oct-2018 12:05:48 ^ build 03-Oct-2018 12:05:48 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:05:48 from httprequest.cpp:2: build 03-Oct-2018 12:05:48 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:05:48 template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R > build 03-Oct-2018 12:05:48 ^ build 03-Oct-2018 12:05:48 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/get_pointer.hpp:14, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/bind/mem_fn.hpp:25, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/mem_fn.hpp:22, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/bind/bind.hpp:26, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/bind.hpp:22, build 03-Oct-2018 12:05:48 from httprequest.cpp:1: build 03-Oct-2018 12:05:48 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:05:48 template class auto_ptr; build 03-Oct-2018 12:05:48 ^ build 03-Oct-2018 12:05:48 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:05:48 from httprequest.cpp:2: build 03-Oct-2018 12:05:48 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:05:48 explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() build 03-Oct-2018 12:05:48 ^ build 03-Oct-2018 12:05:48 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/get_pointer.hpp:14, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/bind/mem_fn.hpp:25, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/mem_fn.hpp:22, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/bind/bind.hpp:26, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/bind.hpp:22, build 03-Oct-2018 12:05:48 from httprequest.cpp:1: build 03-Oct-2018 12:05:48 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:05:48 template class auto_ptr; build 03-Oct-2018 12:05:48 ^ build 03-Oct-2018 12:05:48 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:05:48 from httprequest.cpp:2: build 03-Oct-2018 12:05:48 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:05:48 shared_ptr( std::auto_ptr && r ): px(r.get()), pn() build 03-Oct-2018 12:05:48 ^ build 03-Oct-2018 12:05:48 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/get_pointer.hpp:14, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/bind/mem_fn.hpp:25, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/mem_fn.hpp:22, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/bind/bind.hpp:26, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/bind.hpp:22, build 03-Oct-2018 12:05:48 from httprequest.cpp:1: build 03-Oct-2018 12:05:48 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:05:48 template class auto_ptr; build 03-Oct-2018 12:05:48 ^ build 03-Oct-2018 12:05:48 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:05:48 from httprequest.cpp:2: build 03-Oct-2018 12:05:48 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:05:48 shared_ptr & operator=( std::auto_ptr & r ) build 03-Oct-2018 12:05:48 ^ build 03-Oct-2018 12:05:48 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/get_pointer.hpp:14, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/bind/mem_fn.hpp:25, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/mem_fn.hpp:22, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/bind/bind.hpp:26, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/bind.hpp:22, build 03-Oct-2018 12:05:48 from httprequest.cpp:1: build 03-Oct-2018 12:05:48 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:05:48 template class auto_ptr; build 03-Oct-2018 12:05:48 ^ build 03-Oct-2018 12:05:48 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:05:48 from httprequest.cpp:2: build 03-Oct-2018 12:05:48 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:05:48 shared_ptr & operator=( std::auto_ptr && r ) build 03-Oct-2018 12:05:48 ^ build 03-Oct-2018 12:05:48 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/get_pointer.hpp:14, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/bind/mem_fn.hpp:25, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/mem_fn.hpp:22, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/bind/bind.hpp:26, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/bind.hpp:22, build 03-Oct-2018 12:05:48 from httprequest.cpp:1: build 03-Oct-2018 12:05:48 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:05:48 template class auto_ptr; build 03-Oct-2018 12:05:48 ^ build 03-Oct-2018 12:05:48 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:05:48 from httprequest.cpp:2: build 03-Oct-2018 12:05:48 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)': build 03-Oct-2018 12:05:48 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:05:48 this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); build 03-Oct-2018 12:05:48 ^ build 03-Oct-2018 12:05:48 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/get_pointer.hpp:14, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/bind/mem_fn.hpp:25, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/mem_fn.hpp:22, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/bind/bind.hpp:26, build 03-Oct-2018 12:05:48 from /usr/local/lib/R/site-library/BH/include/boost/bind.hpp:22, build 03-Oct-2018 12:05:48 from httprequest.cpp:1: build 03-Oct-2018 12:05:48 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:05:48 template class auto_ptr; build 03-Oct-2018 12:05:48 ^ build 03-Oct-2018 12:05:54 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -pthread -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/later/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c httpresponse.cpp -o httpresponse.o build 03-Oct-2018 12:05:57 In file included from /usr/local/lib/R/site-library/BH/include/boost/bind/mem_fn.hpp:25:0, build 03-Oct-2018 12:05:57 from /usr/local/lib/R/site-library/BH/include/boost/mem_fn.hpp:22, build 03-Oct-2018 12:05:57 from /usr/local/lib/R/site-library/BH/include/boost/function/detail/prologue.hpp:18, build 03-Oct-2018 12:05:57 from /usr/local/lib/R/site-library/BH/include/boost/function.hpp:30, build 03-Oct-2018 12:05:57 from httpresponse.h:6, build 03-Oct-2018 12:05:57 from httpresponse.cpp:1: build 03-Oct-2018 12:05:57 /usr/local/lib/R/site-library/BH/include/boost/get_pointer.hpp:48:40: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:05:57 template T * get_pointer(std::auto_ptr const& p) build 03-Oct-2018 12:05:57 ^ build 03-Oct-2018 12:05:57 In file included from /usr/include/c++/5/bits/locale_conv.h:41:0, build 03-Oct-2018 12:05:57 from /usr/include/c++/5/locale:43, build 03-Oct-2018 12:05:57 from /usr/include/c++/5/iomanip:43, build 03-Oct-2018 12:05:57 from /usr/local/lib/R/site-library/Rcpp/include/RcppCommon.h:52, build 03-Oct-2018 12:05:57 from /usr/local/lib/R/site-library/Rcpp/include/Rcpp.h:27, build 03-Oct-2018 12:05:57 from uvutil.h:15, build 03-Oct-2018 12:05:57 from httpresponse.h:4, build 03-Oct-2018 12:05:57 from httpresponse.cpp:1: build 03-Oct-2018 12:05:57 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:05:57 template class auto_ptr; build 03-Oct-2018 12:05:57 ^ build 03-Oct-2018 12:05:57 In file included from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0, build 03-Oct-2018 12:05:57 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:05:57 from httpresponse.h:7, build 03-Oct-2018 12:05:57 from httpresponse.cpp:1: build 03-Oct-2018 12:05:57 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:355:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:05:57 explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) build 03-Oct-2018 12:05:57 ^ build 03-Oct-2018 12:05:57 In file included from /usr/include/c++/5/bits/locale_conv.h:41:0, build 03-Oct-2018 12:05:57 from /usr/include/c++/5/locale:43, build 03-Oct-2018 12:05:57 from /usr/include/c++/5/iomanip:43, build 03-Oct-2018 12:05:57 from /usr/local/lib/R/site-library/Rcpp/include/RcppCommon.h:52, build 03-Oct-2018 12:05:57 from /usr/local/lib/R/site-library/Rcpp/include/Rcpp.h:27, build 03-Oct-2018 12:05:57 from uvutil.h:15, build 03-Oct-2018 12:05:57 from httpresponse.h:4, build 03-Oct-2018 12:05:57 from httpresponse.cpp:1: build 03-Oct-2018 12:05:57 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:05:57 template class auto_ptr; build 03-Oct-2018 12:05:57 ^ build 03-Oct-2018 12:05:57 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:05:57 from httpresponse.h:7, build 03-Oct-2018 12:05:57 from httpresponse.cpp:1: build 03-Oct-2018 12:05:57 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:05:57 template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R > build 03-Oct-2018 12:05:57 ^ build 03-Oct-2018 12:05:57 In file included from /usr/include/c++/5/bits/locale_conv.h:41:0, build 03-Oct-2018 12:05:57 from /usr/include/c++/5/locale:43, build 03-Oct-2018 12:05:57 from /usr/include/c++/5/iomanip:43, build 03-Oct-2018 12:05:57 from /usr/local/lib/R/site-library/Rcpp/include/RcppCommon.h:52, build 03-Oct-2018 12:05:57 from /usr/local/lib/R/site-library/Rcpp/include/Rcpp.h:27, build 03-Oct-2018 12:05:57 from uvutil.h:15, build 03-Oct-2018 12:05:57 from httpresponse.h:4, build 03-Oct-2018 12:05:57 from httpresponse.cpp:1: build 03-Oct-2018 12:05:57 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:05:57 template class auto_ptr; build 03-Oct-2018 12:05:57 ^ build 03-Oct-2018 12:05:57 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:05:57 from httpresponse.h:7, build 03-Oct-2018 12:05:57 from httpresponse.cpp:1: build 03-Oct-2018 12:05:57 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:05:57 explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() build 03-Oct-2018 12:05:57 ^ build 03-Oct-2018 12:05:57 In file included from /usr/include/c++/5/bits/locale_conv.h:41:0, build 03-Oct-2018 12:05:57 from /usr/include/c++/5/locale:43, build 03-Oct-2018 12:05:57 from /usr/include/c++/5/iomanip:43, build 03-Oct-2018 12:05:57 from /usr/local/lib/R/site-library/Rcpp/include/RcppCommon.h:52, build 03-Oct-2018 12:05:57 from /usr/local/lib/R/site-library/Rcpp/include/Rcpp.h:27, build 03-Oct-2018 12:05:57 from uvutil.h:15, build 03-Oct-2018 12:05:57 from httpresponse.h:4, build 03-Oct-2018 12:05:57 from httpresponse.cpp:1: build 03-Oct-2018 12:05:57 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:05:57 template class auto_ptr; build 03-Oct-2018 12:05:57 ^ build 03-Oct-2018 12:05:57 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:05:57 from httpresponse.h:7, build 03-Oct-2018 12:05:57 from httpresponse.cpp:1: build 03-Oct-2018 12:05:57 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:05:57 shared_ptr( std::auto_ptr && r ): px(r.get()), pn() build 03-Oct-2018 12:05:57 ^ build 03-Oct-2018 12:05:57 In file included from /usr/include/c++/5/bits/locale_conv.h:41:0, build 03-Oct-2018 12:05:57 from /usr/include/c++/5/locale:43, build 03-Oct-2018 12:05:57 from /usr/include/c++/5/iomanip:43, build 03-Oct-2018 12:05:57 from /usr/local/lib/R/site-library/Rcpp/include/RcppCommon.h:52, build 03-Oct-2018 12:05:57 from /usr/local/lib/R/site-library/Rcpp/include/Rcpp.h:27, build 03-Oct-2018 12:05:57 from uvutil.h:15, build 03-Oct-2018 12:05:57 from httpresponse.h:4, build 03-Oct-2018 12:05:57 from httpresponse.cpp:1: build 03-Oct-2018 12:05:57 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:05:57 template class auto_ptr; build 03-Oct-2018 12:05:57 ^ build 03-Oct-2018 12:05:57 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:05:57 from httpresponse.h:7, build 03-Oct-2018 12:05:57 from httpresponse.cpp:1: build 03-Oct-2018 12:05:57 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:05:57 shared_ptr & operator=( std::auto_ptr & r ) build 03-Oct-2018 12:05:57 ^ build 03-Oct-2018 12:05:57 In file included from /usr/include/c++/5/bits/locale_conv.h:41:0, build 03-Oct-2018 12:05:57 from /usr/include/c++/5/locale:43, build 03-Oct-2018 12:05:57 from /usr/include/c++/5/iomanip:43, build 03-Oct-2018 12:05:57 from /usr/local/lib/R/site-library/Rcpp/include/RcppCommon.h:52, build 03-Oct-2018 12:05:57 from /usr/local/lib/R/site-library/Rcpp/include/Rcpp.h:27, build 03-Oct-2018 12:05:57 from uvutil.h:15, build 03-Oct-2018 12:05:57 from httpresponse.h:4, build 03-Oct-2018 12:05:57 from httpresponse.cpp:1: build 03-Oct-2018 12:05:57 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:05:57 template class auto_ptr; build 03-Oct-2018 12:05:57 ^ build 03-Oct-2018 12:05:57 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:05:57 from httpresponse.h:7, build 03-Oct-2018 12:05:57 from httpresponse.cpp:1: build 03-Oct-2018 12:05:57 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:05:57 shared_ptr & operator=( std::auto_ptr && r ) build 03-Oct-2018 12:05:57 ^ build 03-Oct-2018 12:05:57 In file included from /usr/include/c++/5/bits/locale_conv.h:41:0, build 03-Oct-2018 12:05:57 from /usr/include/c++/5/locale:43, build 03-Oct-2018 12:05:57 from /usr/include/c++/5/iomanip:43, build 03-Oct-2018 12:05:57 from /usr/local/lib/R/site-library/Rcpp/include/RcppCommon.h:52, build 03-Oct-2018 12:05:57 from /usr/local/lib/R/site-library/Rcpp/include/Rcpp.h:27, build 03-Oct-2018 12:05:57 from uvutil.h:15, build 03-Oct-2018 12:05:57 from httpresponse.h:4, build 03-Oct-2018 12:05:57 from httpresponse.cpp:1: build 03-Oct-2018 12:05:57 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:05:57 template class auto_ptr; build 03-Oct-2018 12:05:57 ^ build 03-Oct-2018 12:05:57 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:05:57 from httpresponse.h:7, build 03-Oct-2018 12:05:57 from httpresponse.cpp:1: build 03-Oct-2018 12:05:57 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)': build 03-Oct-2018 12:05:57 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:05:57 this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); build 03-Oct-2018 12:05:57 ^ build 03-Oct-2018 12:05:57 In file included from /usr/include/c++/5/bits/locale_conv.h:41:0, build 03-Oct-2018 12:05:57 from /usr/include/c++/5/locale:43, build 03-Oct-2018 12:05:57 from /usr/include/c++/5/iomanip:43, build 03-Oct-2018 12:05:57 from /usr/local/lib/R/site-library/Rcpp/include/RcppCommon.h:52, build 03-Oct-2018 12:05:57 from /usr/local/lib/R/site-library/Rcpp/include/Rcpp.h:27, build 03-Oct-2018 12:05:57 from uvutil.h:15, build 03-Oct-2018 12:05:57 from httpresponse.h:4, build 03-Oct-2018 12:05:57 from httpresponse.cpp:1: build 03-Oct-2018 12:05:57 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:05:57 template class auto_ptr; build 03-Oct-2018 12:05:57 ^ build 03-Oct-2018 12:05:58 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -pthread -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/later/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c httpuv.cpp -o httpuv.o build 03-Oct-2018 12:05:59 In file included from /usr/local/lib/R/site-library/BH/include/boost/bind/mem_fn.hpp:25:0, build 03-Oct-2018 12:05:59 from /usr/local/lib/R/site-library/BH/include/boost/mem_fn.hpp:22, build 03-Oct-2018 12:05:59 from /usr/local/lib/R/site-library/BH/include/boost/function/detail/prologue.hpp:18, build 03-Oct-2018 12:05:59 from /usr/local/lib/R/site-library/BH/include/boost/function.hpp:30, build 03-Oct-2018 12:05:59 from httpuv.cpp:8: build 03-Oct-2018 12:05:59 /usr/local/lib/R/site-library/BH/include/boost/get_pointer.hpp:48:40: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:05:59 template T * get_pointer(std::auto_ptr const& p) build 03-Oct-2018 12:05:59 ^ build 03-Oct-2018 12:05:59 In file included from /usr/include/c++/5/bits/locale_conv.h:41:0, build 03-Oct-2018 12:05:59 from /usr/include/c++/5/locale:43, build 03-Oct-2018 12:05:59 from /usr/include/c++/5/iomanip:43, build 03-Oct-2018 12:05:59 from httpuv.cpp:5: build 03-Oct-2018 12:05:59 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:05:59 template class auto_ptr; build 03-Oct-2018 12:05:59 ^ build 03-Oct-2018 12:06:01 In file included from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0, build 03-Oct-2018 12:06:01 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:06:01 from websockets.h:9, build 03-Oct-2018 12:06:01 from webapplication.h:7, build 03-Oct-2018 12:06:01 from httpuv.cpp:13: build 03-Oct-2018 12:06:01 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:355:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:01 explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) build 03-Oct-2018 12:06:01 ^ build 03-Oct-2018 12:06:01 In file included from /usr/include/c++/5/bits/locale_conv.h:41:0, build 03-Oct-2018 12:06:01 from /usr/include/c++/5/locale:43, build 03-Oct-2018 12:06:01 from /usr/include/c++/5/iomanip:43, build 03-Oct-2018 12:06:01 from httpuv.cpp:5: build 03-Oct-2018 12:06:01 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:01 template class auto_ptr; build 03-Oct-2018 12:06:01 ^ build 03-Oct-2018 12:06:01 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:06:01 from websockets.h:9, build 03-Oct-2018 12:06:01 from webapplication.h:7, build 03-Oct-2018 12:06:01 from httpuv.cpp:13: build 03-Oct-2018 12:06:01 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:01 template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R > build 03-Oct-2018 12:06:01 ^ build 03-Oct-2018 12:06:01 In file included from /usr/include/c++/5/bits/locale_conv.h:41:0, build 03-Oct-2018 12:06:01 from /usr/include/c++/5/locale:43, build 03-Oct-2018 12:06:01 from /usr/include/c++/5/iomanip:43, build 03-Oct-2018 12:06:01 from httpuv.cpp:5: build 03-Oct-2018 12:06:01 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:01 template class auto_ptr; build 03-Oct-2018 12:06:01 ^ build 03-Oct-2018 12:06:01 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:06:01 from websockets.h:9, build 03-Oct-2018 12:06:01 from webapplication.h:7, build 03-Oct-2018 12:06:01 from httpuv.cpp:13: build 03-Oct-2018 12:06:01 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:01 explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() build 03-Oct-2018 12:06:01 ^ build 03-Oct-2018 12:06:01 In file included from /usr/include/c++/5/bits/locale_conv.h:41:0, build 03-Oct-2018 12:06:01 from /usr/include/c++/5/locale:43, build 03-Oct-2018 12:06:01 from /usr/include/c++/5/iomanip:43, build 03-Oct-2018 12:06:01 from httpuv.cpp:5: build 03-Oct-2018 12:06:01 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:01 template class auto_ptr; build 03-Oct-2018 12:06:01 ^ build 03-Oct-2018 12:06:01 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:06:01 from websockets.h:9, build 03-Oct-2018 12:06:01 from webapplication.h:7, build 03-Oct-2018 12:06:01 from httpuv.cpp:13: build 03-Oct-2018 12:06:01 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:01 shared_ptr( std::auto_ptr && r ): px(r.get()), pn() build 03-Oct-2018 12:06:01 ^ build 03-Oct-2018 12:06:01 In file included from /usr/include/c++/5/bits/locale_conv.h:41:0, build 03-Oct-2018 12:06:01 from /usr/include/c++/5/locale:43, build 03-Oct-2018 12:06:01 from /usr/include/c++/5/iomanip:43, build 03-Oct-2018 12:06:01 from httpuv.cpp:5: build 03-Oct-2018 12:06:01 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:01 template class auto_ptr; build 03-Oct-2018 12:06:01 ^ build 03-Oct-2018 12:06:01 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:06:01 from websockets.h:9, build 03-Oct-2018 12:06:01 from webapplication.h:7, build 03-Oct-2018 12:06:01 from httpuv.cpp:13: build 03-Oct-2018 12:06:01 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:01 shared_ptr & operator=( std::auto_ptr & r ) build 03-Oct-2018 12:06:01 ^ build 03-Oct-2018 12:06:01 In file included from /usr/include/c++/5/bits/locale_conv.h:41:0, build 03-Oct-2018 12:06:01 from /usr/include/c++/5/locale:43, build 03-Oct-2018 12:06:01 from /usr/include/c++/5/iomanip:43, build 03-Oct-2018 12:06:01 from httpuv.cpp:5: build 03-Oct-2018 12:06:01 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:01 template class auto_ptr; build 03-Oct-2018 12:06:01 ^ build 03-Oct-2018 12:06:01 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:06:01 from websockets.h:9, build 03-Oct-2018 12:06:01 from webapplication.h:7, build 03-Oct-2018 12:06:01 from httpuv.cpp:13: build 03-Oct-2018 12:06:01 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:01 shared_ptr & operator=( std::auto_ptr && r ) build 03-Oct-2018 12:06:01 ^ build 03-Oct-2018 12:06:01 In file included from /usr/include/c++/5/bits/locale_conv.h:41:0, build 03-Oct-2018 12:06:01 from /usr/include/c++/5/locale:43, build 03-Oct-2018 12:06:01 from /usr/include/c++/5/iomanip:43, build 03-Oct-2018 12:06:01 from httpuv.cpp:5: build 03-Oct-2018 12:06:01 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:01 template class auto_ptr; build 03-Oct-2018 12:06:01 ^ build 03-Oct-2018 12:06:01 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:06:01 from websockets.h:9, build 03-Oct-2018 12:06:01 from webapplication.h:7, build 03-Oct-2018 12:06:01 from httpuv.cpp:13: build 03-Oct-2018 12:06:01 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)': build 03-Oct-2018 12:06:01 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:01 this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); build 03-Oct-2018 12:06:01 ^ build 03-Oct-2018 12:06:01 In file included from /usr/include/c++/5/bits/locale_conv.h:41:0, build 03-Oct-2018 12:06:01 from /usr/include/c++/5/locale:43, build 03-Oct-2018 12:06:01 from /usr/include/c++/5/iomanip:43, build 03-Oct-2018 12:06:01 from httpuv.cpp:5: build 03-Oct-2018 12:06:01 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:01 template class auto_ptr; build 03-Oct-2018 12:06:01 ^ build 03-Oct-2018 12:06:04 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -pthread -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/later/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c md5.c -o md5.o build 03-Oct-2018 12:06:04 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -pthread -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/later/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c set_invalid_parameter.c -o set_invalid_parameter.o build 03-Oct-2018 12:06:04 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -pthread -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/later/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c socket.cpp -o socket.o build 03-Oct-2018 12:06:04 In file included from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0, build 03-Oct-2018 12:06:04 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:06:04 from http.h:5, build 03-Oct-2018 12:06:04 from socket.h:4, build 03-Oct-2018 12:06:04 from socket.cpp:1: build 03-Oct-2018 12:06:04 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:355:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:04 explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) build 03-Oct-2018 12:06:04 ^ build 03-Oct-2018 12:06:04 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:06:04 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:06:04 from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:23, build 03-Oct-2018 12:06:04 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:06:04 from http.h:5, build 03-Oct-2018 12:06:04 from socket.h:4, build 03-Oct-2018 12:06:04 from socket.cpp:1: build 03-Oct-2018 12:06:04 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:04 template class auto_ptr; build 03-Oct-2018 12:06:04 ^ build 03-Oct-2018 12:06:05 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:06:05 from http.h:5, build 03-Oct-2018 12:06:05 from socket.h:4, build 03-Oct-2018 12:06:05 from socket.cpp:1: build 03-Oct-2018 12:06:05 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:05 template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R > build 03-Oct-2018 12:06:05 ^ build 03-Oct-2018 12:06:05 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:06:05 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:06:05 from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:23, build 03-Oct-2018 12:06:05 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:06:05 from http.h:5, build 03-Oct-2018 12:06:05 from socket.h:4, build 03-Oct-2018 12:06:05 from socket.cpp:1: build 03-Oct-2018 12:06:05 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:05 template class auto_ptr; build 03-Oct-2018 12:06:05 ^ build 03-Oct-2018 12:06:05 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:06:05 from http.h:5, build 03-Oct-2018 12:06:05 from socket.h:4, build 03-Oct-2018 12:06:05 from socket.cpp:1: build 03-Oct-2018 12:06:05 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:05 explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() build 03-Oct-2018 12:06:05 ^ build 03-Oct-2018 12:06:05 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:06:05 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:06:05 from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:23, build 03-Oct-2018 12:06:05 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:06:05 from http.h:5, build 03-Oct-2018 12:06:05 from socket.h:4, build 03-Oct-2018 12:06:05 from socket.cpp:1: build 03-Oct-2018 12:06:05 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:05 template class auto_ptr; build 03-Oct-2018 12:06:05 ^ build 03-Oct-2018 12:06:05 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:06:05 from http.h:5, build 03-Oct-2018 12:06:05 from socket.h:4, build 03-Oct-2018 12:06:05 from socket.cpp:1: build 03-Oct-2018 12:06:05 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:05 shared_ptr( std::auto_ptr && r ): px(r.get()), pn() build 03-Oct-2018 12:06:05 ^ build 03-Oct-2018 12:06:05 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:06:05 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:06:05 from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:23, build 03-Oct-2018 12:06:05 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:06:05 from http.h:5, build 03-Oct-2018 12:06:05 from socket.h:4, build 03-Oct-2018 12:06:05 from socket.cpp:1: build 03-Oct-2018 12:06:05 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:05 template class auto_ptr; build 03-Oct-2018 12:06:05 ^ build 03-Oct-2018 12:06:05 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:06:05 from http.h:5, build 03-Oct-2018 12:06:05 from socket.h:4, build 03-Oct-2018 12:06:05 from socket.cpp:1: build 03-Oct-2018 12:06:05 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:05 shared_ptr & operator=( std::auto_ptr & r ) build 03-Oct-2018 12:06:05 ^ build 03-Oct-2018 12:06:05 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:06:05 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:06:05 from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:23, build 03-Oct-2018 12:06:05 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:06:05 from http.h:5, build 03-Oct-2018 12:06:05 from socket.h:4, build 03-Oct-2018 12:06:05 from socket.cpp:1: build 03-Oct-2018 12:06:05 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:05 template class auto_ptr; build 03-Oct-2018 12:06:05 ^ build 03-Oct-2018 12:06:05 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:06:05 from http.h:5, build 03-Oct-2018 12:06:05 from socket.h:4, build 03-Oct-2018 12:06:05 from socket.cpp:1: build 03-Oct-2018 12:06:05 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:05 shared_ptr & operator=( std::auto_ptr && r ) build 03-Oct-2018 12:06:05 ^ build 03-Oct-2018 12:06:05 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:06:05 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:06:05 from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:23, build 03-Oct-2018 12:06:05 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:06:05 from http.h:5, build 03-Oct-2018 12:06:05 from socket.h:4, build 03-Oct-2018 12:06:05 from socket.cpp:1: build 03-Oct-2018 12:06:05 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:05 template class auto_ptr; build 03-Oct-2018 12:06:05 ^ build 03-Oct-2018 12:06:05 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:06:05 from http.h:5, build 03-Oct-2018 12:06:05 from socket.h:4, build 03-Oct-2018 12:06:05 from socket.cpp:1: build 03-Oct-2018 12:06:05 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)': build 03-Oct-2018 12:06:05 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:05 this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); build 03-Oct-2018 12:06:05 ^ build 03-Oct-2018 12:06:05 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:06:05 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:06:05 from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:23, build 03-Oct-2018 12:06:05 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:06:05 from http.h:5, build 03-Oct-2018 12:06:05 from socket.h:4, build 03-Oct-2018 12:06:05 from socket.cpp:1: build 03-Oct-2018 12:06:05 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:05 template class auto_ptr; build 03-Oct-2018 12:06:05 ^ build 03-Oct-2018 12:06:05 In file included from /usr/local/lib/R/site-library/BH/include/boost/bind/mem_fn.hpp:25:0, build 03-Oct-2018 12:06:05 from /usr/local/lib/R/site-library/BH/include/boost/mem_fn.hpp:22, build 03-Oct-2018 12:06:05 from /usr/local/lib/R/site-library/BH/include/boost/bind/bind.hpp:26, build 03-Oct-2018 12:06:05 from /usr/local/lib/R/site-library/BH/include/boost/bind.hpp:22, build 03-Oct-2018 12:06:05 from http.h:6, build 03-Oct-2018 12:06:05 from socket.h:4, build 03-Oct-2018 12:06:05 from socket.cpp:1: build 03-Oct-2018 12:06:05 /usr/local/lib/R/site-library/BH/include/boost/get_pointer.hpp: At global scope: build 03-Oct-2018 12:06:05 /usr/local/lib/R/site-library/BH/include/boost/get_pointer.hpp:48:40: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:05 template T * get_pointer(std::auto_ptr const& p) build 03-Oct-2018 12:06:05 ^ build 03-Oct-2018 12:06:05 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:06:05 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:06:05 from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:23, build 03-Oct-2018 12:06:05 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:06:05 from http.h:5, build 03-Oct-2018 12:06:05 from socket.h:4, build 03-Oct-2018 12:06:05 from socket.cpp:1: build 03-Oct-2018 12:06:05 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:05 template class auto_ptr; build 03-Oct-2018 12:06:05 ^ build 03-Oct-2018 12:06:08 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -pthread -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/later/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c thread.cpp -o thread.o build 03-Oct-2018 12:06:08 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -pthread -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/later/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.cpp -o utils.o build 03-Oct-2018 12:06:08 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -pthread -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/later/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c uvutil.cpp -o uvutil.o build 03-Oct-2018 12:06:12 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -pthread -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/later/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c webapplication.cpp -o webapplication.o build 03-Oct-2018 12:06:12 In file included from /usr/local/lib/R/site-library/BH/include/boost/bind/mem_fn.hpp:25:0, build 03-Oct-2018 12:06:12 from /usr/local/lib/R/site-library/BH/include/boost/mem_fn.hpp:22, build 03-Oct-2018 12:06:12 from /usr/local/lib/R/site-library/BH/include/boost/bind/bind.hpp:26, build 03-Oct-2018 12:06:12 from /usr/local/lib/R/site-library/BH/include/boost/bind.hpp:22, build 03-Oct-2018 12:06:12 from webapplication.cpp:1: build 03-Oct-2018 12:06:12 /usr/local/lib/R/site-library/BH/include/boost/get_pointer.hpp:48:40: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:12 template T * get_pointer(std::auto_ptr const& p) build 03-Oct-2018 12:06:12 ^ build 03-Oct-2018 12:06:12 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:06:12 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:06:12 from /usr/local/lib/R/site-library/BH/include/boost/get_pointer.hpp:14, build 03-Oct-2018 12:06:12 from /usr/local/lib/R/site-library/BH/include/boost/bind/mem_fn.hpp:25, build 03-Oct-2018 12:06:12 from /usr/local/lib/R/site-library/BH/include/boost/mem_fn.hpp:22, build 03-Oct-2018 12:06:12 from /usr/local/lib/R/site-library/BH/include/boost/bind/bind.hpp:26, build 03-Oct-2018 12:06:12 from /usr/local/lib/R/site-library/BH/include/boost/bind.hpp:22, build 03-Oct-2018 12:06:12 from webapplication.cpp:1: build 03-Oct-2018 12:06:12 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:12 template class auto_ptr; build 03-Oct-2018 12:06:12 ^ build 03-Oct-2018 12:06:15 In file included from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:06:15 from websockets.h:9, build 03-Oct-2018 12:06:15 from webapplication.h:7, build 03-Oct-2018 12:06:15 from webapplication.cpp:4: build 03-Oct-2018 12:06:15 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:355:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:15 explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) build 03-Oct-2018 12:06:15 ^ build 03-Oct-2018 12:06:15 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/get_pointer.hpp:14, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/bind/mem_fn.hpp:25, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/mem_fn.hpp:22, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/bind/bind.hpp:26, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/bind.hpp:22, build 03-Oct-2018 12:06:15 from webapplication.cpp:1: build 03-Oct-2018 12:06:15 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:15 template class auto_ptr; build 03-Oct-2018 12:06:15 ^ build 03-Oct-2018 12:06:15 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:06:15 from websockets.h:9, build 03-Oct-2018 12:06:15 from webapplication.h:7, build 03-Oct-2018 12:06:15 from webapplication.cpp:4: build 03-Oct-2018 12:06:15 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:15 template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R > build 03-Oct-2018 12:06:15 ^ build 03-Oct-2018 12:06:15 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/get_pointer.hpp:14, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/bind/mem_fn.hpp:25, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/mem_fn.hpp:22, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/bind/bind.hpp:26, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/bind.hpp:22, build 03-Oct-2018 12:06:15 from webapplication.cpp:1: build 03-Oct-2018 12:06:15 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:15 template class auto_ptr; build 03-Oct-2018 12:06:15 ^ build 03-Oct-2018 12:06:15 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:06:15 from websockets.h:9, build 03-Oct-2018 12:06:15 from webapplication.h:7, build 03-Oct-2018 12:06:15 from webapplication.cpp:4: build 03-Oct-2018 12:06:15 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:15 explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() build 03-Oct-2018 12:06:15 ^ build 03-Oct-2018 12:06:15 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/get_pointer.hpp:14, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/bind/mem_fn.hpp:25, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/mem_fn.hpp:22, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/bind/bind.hpp:26, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/bind.hpp:22, build 03-Oct-2018 12:06:15 from webapplication.cpp:1: build 03-Oct-2018 12:06:15 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:15 template class auto_ptr; build 03-Oct-2018 12:06:15 ^ build 03-Oct-2018 12:06:15 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:06:15 from websockets.h:9, build 03-Oct-2018 12:06:15 from webapplication.h:7, build 03-Oct-2018 12:06:15 from webapplication.cpp:4: build 03-Oct-2018 12:06:15 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:15 shared_ptr( std::auto_ptr && r ): px(r.get()), pn() build 03-Oct-2018 12:06:15 ^ build 03-Oct-2018 12:06:15 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/get_pointer.hpp:14, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/bind/mem_fn.hpp:25, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/mem_fn.hpp:22, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/bind/bind.hpp:26, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/bind.hpp:22, build 03-Oct-2018 12:06:15 from webapplication.cpp:1: build 03-Oct-2018 12:06:15 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:15 template class auto_ptr; build 03-Oct-2018 12:06:15 ^ build 03-Oct-2018 12:06:15 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:06:15 from websockets.h:9, build 03-Oct-2018 12:06:15 from webapplication.h:7, build 03-Oct-2018 12:06:15 from webapplication.cpp:4: build 03-Oct-2018 12:06:15 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:15 shared_ptr & operator=( std::auto_ptr & r ) build 03-Oct-2018 12:06:15 ^ build 03-Oct-2018 12:06:15 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/get_pointer.hpp:14, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/bind/mem_fn.hpp:25, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/mem_fn.hpp:22, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/bind/bind.hpp:26, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/bind.hpp:22, build 03-Oct-2018 12:06:15 from webapplication.cpp:1: build 03-Oct-2018 12:06:15 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:15 template class auto_ptr; build 03-Oct-2018 12:06:15 ^ build 03-Oct-2018 12:06:15 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:06:15 from websockets.h:9, build 03-Oct-2018 12:06:15 from webapplication.h:7, build 03-Oct-2018 12:06:15 from webapplication.cpp:4: build 03-Oct-2018 12:06:15 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:15 shared_ptr & operator=( std::auto_ptr && r ) build 03-Oct-2018 12:06:15 ^ build 03-Oct-2018 12:06:15 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/get_pointer.hpp:14, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/bind/mem_fn.hpp:25, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/mem_fn.hpp:22, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/bind/bind.hpp:26, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/bind.hpp:22, build 03-Oct-2018 12:06:15 from webapplication.cpp:1: build 03-Oct-2018 12:06:15 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:15 template class auto_ptr; build 03-Oct-2018 12:06:15 ^ build 03-Oct-2018 12:06:15 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:06:15 from websockets.h:9, build 03-Oct-2018 12:06:15 from webapplication.h:7, build 03-Oct-2018 12:06:15 from webapplication.cpp:4: build 03-Oct-2018 12:06:15 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)': build 03-Oct-2018 12:06:15 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:15 this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); build 03-Oct-2018 12:06:15 ^ build 03-Oct-2018 12:06:15 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/get_pointer.hpp:14, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/bind/mem_fn.hpp:25, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/mem_fn.hpp:22, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/bind/bind.hpp:26, build 03-Oct-2018 12:06:15 from /usr/local/lib/R/site-library/BH/include/boost/bind.hpp:22, build 03-Oct-2018 12:06:15 from webapplication.cpp:1: build 03-Oct-2018 12:06:15 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:15 template class auto_ptr; build 03-Oct-2018 12:06:15 ^ build 03-Oct-2018 12:06:17 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -pthread -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/later/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c websockets-base.cpp -o websockets-base.o build 03-Oct-2018 12:06:17 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -pthread -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/later/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c websockets-hixie76.cpp -o websockets-hixie76.o build 03-Oct-2018 12:06:18 In file included from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0, build 03-Oct-2018 12:06:18 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:06:18 from websockets.h:9, build 03-Oct-2018 12:06:18 from websockets-hixie76.h:4, build 03-Oct-2018 12:06:18 from websockets-hixie76.cpp:1: build 03-Oct-2018 12:06:18 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:355:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:18 explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) build 03-Oct-2018 12:06:18 ^ build 03-Oct-2018 12:06:18 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:06:18 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:06:18 from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:23, build 03-Oct-2018 12:06:18 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:06:18 from websockets.h:9, build 03-Oct-2018 12:06:18 from websockets-hixie76.h:4, build 03-Oct-2018 12:06:18 from websockets-hixie76.cpp:1: build 03-Oct-2018 12:06:18 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:18 template class auto_ptr; build 03-Oct-2018 12:06:18 ^ build 03-Oct-2018 12:06:18 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:06:18 from websockets.h:9, build 03-Oct-2018 12:06:18 from websockets-hixie76.h:4, build 03-Oct-2018 12:06:18 from websockets-hixie76.cpp:1: build 03-Oct-2018 12:06:18 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:18 template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R > build 03-Oct-2018 12:06:18 ^ build 03-Oct-2018 12:06:18 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:06:18 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:06:18 from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:23, build 03-Oct-2018 12:06:18 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:06:18 from websockets.h:9, build 03-Oct-2018 12:06:18 from websockets-hixie76.h:4, build 03-Oct-2018 12:06:18 from websockets-hixie76.cpp:1: build 03-Oct-2018 12:06:18 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:18 template class auto_ptr; build 03-Oct-2018 12:06:18 ^ build 03-Oct-2018 12:06:18 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:06:18 from websockets.h:9, build 03-Oct-2018 12:06:18 from websockets-hixie76.h:4, build 03-Oct-2018 12:06:18 from websockets-hixie76.cpp:1: build 03-Oct-2018 12:06:18 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:18 explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() build 03-Oct-2018 12:06:18 ^ build 03-Oct-2018 12:06:18 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:06:18 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:06:18 from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:23, build 03-Oct-2018 12:06:18 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:06:18 from websockets.h:9, build 03-Oct-2018 12:06:18 from websockets-hixie76.h:4, build 03-Oct-2018 12:06:18 from websockets-hixie76.cpp:1: build 03-Oct-2018 12:06:18 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:18 template class auto_ptr; build 03-Oct-2018 12:06:18 ^ build 03-Oct-2018 12:06:18 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:06:18 from websockets.h:9, build 03-Oct-2018 12:06:18 from websockets-hixie76.h:4, build 03-Oct-2018 12:06:18 from websockets-hixie76.cpp:1: build 03-Oct-2018 12:06:18 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:18 shared_ptr( std::auto_ptr && r ): px(r.get()), pn() build 03-Oct-2018 12:06:18 ^ build 03-Oct-2018 12:06:18 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:06:18 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:06:18 from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:23, build 03-Oct-2018 12:06:18 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:06:18 from websockets.h:9, build 03-Oct-2018 12:06:18 from websockets-hixie76.h:4, build 03-Oct-2018 12:06:18 from websockets-hixie76.cpp:1: build 03-Oct-2018 12:06:18 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:18 template class auto_ptr; build 03-Oct-2018 12:06:18 ^ build 03-Oct-2018 12:06:18 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:06:18 from websockets.h:9, build 03-Oct-2018 12:06:18 from websockets-hixie76.h:4, build 03-Oct-2018 12:06:18 from websockets-hixie76.cpp:1: build 03-Oct-2018 12:06:18 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:18 shared_ptr & operator=( std::auto_ptr & r ) build 03-Oct-2018 12:06:18 ^ build 03-Oct-2018 12:06:18 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:06:18 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:06:18 from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:23, build 03-Oct-2018 12:06:18 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:06:18 from websockets.h:9, build 03-Oct-2018 12:06:18 from websockets-hixie76.h:4, build 03-Oct-2018 12:06:18 from websockets-hixie76.cpp:1: build 03-Oct-2018 12:06:18 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:18 template class auto_ptr; build 03-Oct-2018 12:06:18 ^ build 03-Oct-2018 12:06:18 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:06:18 from websockets.h:9, build 03-Oct-2018 12:06:18 from websockets-hixie76.h:4, build 03-Oct-2018 12:06:18 from websockets-hixie76.cpp:1: build 03-Oct-2018 12:06:18 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:18 shared_ptr & operator=( std::auto_ptr && r ) build 03-Oct-2018 12:06:18 ^ build 03-Oct-2018 12:06:18 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:06:18 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:06:18 from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:23, build 03-Oct-2018 12:06:18 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:06:18 from websockets.h:9, build 03-Oct-2018 12:06:18 from websockets-hixie76.h:4, build 03-Oct-2018 12:06:18 from websockets-hixie76.cpp:1: build 03-Oct-2018 12:06:18 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:18 template class auto_ptr; build 03-Oct-2018 12:06:18 ^ build 03-Oct-2018 12:06:18 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:06:18 from websockets.h:9, build 03-Oct-2018 12:06:18 from websockets-hixie76.h:4, build 03-Oct-2018 12:06:18 from websockets-hixie76.cpp:1: build 03-Oct-2018 12:06:18 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)': build 03-Oct-2018 12:06:18 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:18 this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); build 03-Oct-2018 12:06:18 ^ build 03-Oct-2018 12:06:18 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:06:18 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:06:18 from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:23, build 03-Oct-2018 12:06:18 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:06:18 from websockets.h:9, build 03-Oct-2018 12:06:18 from websockets-hixie76.h:4, build 03-Oct-2018 12:06:18 from websockets-hixie76.cpp:1: build 03-Oct-2018 12:06:18 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:18 template class auto_ptr; build 03-Oct-2018 12:06:18 ^ build 03-Oct-2018 12:06:18 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -pthread -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/later/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c websockets-hybi03.cpp -o websockets-hybi03.o build 03-Oct-2018 12:06:19 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -pthread -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/later/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c websockets-ietf.cpp -o websockets-ietf.o build 03-Oct-2018 12:06:20 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -pthread -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/later/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c websockets.cpp -o websockets.o build 03-Oct-2018 12:06:21 In file included from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0, build 03-Oct-2018 12:06:21 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:06:21 from websockets.h:9, build 03-Oct-2018 12:06:21 from websockets.cpp:1: build 03-Oct-2018 12:06:21 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:355:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:21 explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) build 03-Oct-2018 12:06:21 ^ build 03-Oct-2018 12:06:21 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:06:21 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:06:21 from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:23, build 03-Oct-2018 12:06:21 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:06:21 from websockets.h:9, build 03-Oct-2018 12:06:21 from websockets.cpp:1: build 03-Oct-2018 12:06:21 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:21 template class auto_ptr; build 03-Oct-2018 12:06:21 ^ build 03-Oct-2018 12:06:21 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:06:21 from websockets.h:9, build 03-Oct-2018 12:06:21 from websockets.cpp:1: build 03-Oct-2018 12:06:21 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:21 template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R > build 03-Oct-2018 12:06:21 ^ build 03-Oct-2018 12:06:21 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:06:21 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:06:21 from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:23, build 03-Oct-2018 12:06:21 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:06:21 from websockets.h:9, build 03-Oct-2018 12:06:21 from websockets.cpp:1: build 03-Oct-2018 12:06:21 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:21 template class auto_ptr; build 03-Oct-2018 12:06:21 ^ build 03-Oct-2018 12:06:21 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:06:21 from websockets.h:9, build 03-Oct-2018 12:06:21 from websockets.cpp:1: build 03-Oct-2018 12:06:21 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:21 explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() build 03-Oct-2018 12:06:21 ^ build 03-Oct-2018 12:06:21 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:06:21 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:06:21 from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:23, build 03-Oct-2018 12:06:21 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:06:21 from websockets.h:9, build 03-Oct-2018 12:06:21 from websockets.cpp:1: build 03-Oct-2018 12:06:21 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:21 template class auto_ptr; build 03-Oct-2018 12:06:21 ^ build 03-Oct-2018 12:06:21 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:06:21 from websockets.h:9, build 03-Oct-2018 12:06:21 from websockets.cpp:1: build 03-Oct-2018 12:06:21 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:21 shared_ptr( std::auto_ptr && r ): px(r.get()), pn() build 03-Oct-2018 12:06:21 ^ build 03-Oct-2018 12:06:21 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:06:21 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:06:21 from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:23, build 03-Oct-2018 12:06:21 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:06:21 from websockets.h:9, build 03-Oct-2018 12:06:21 from websockets.cpp:1: build 03-Oct-2018 12:06:21 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:21 template class auto_ptr; build 03-Oct-2018 12:06:21 ^ build 03-Oct-2018 12:06:21 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:06:21 from websockets.h:9, build 03-Oct-2018 12:06:21 from websockets.cpp:1: build 03-Oct-2018 12:06:21 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:21 shared_ptr & operator=( std::auto_ptr & r ) build 03-Oct-2018 12:06:21 ^ build 03-Oct-2018 12:06:21 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:06:21 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:06:21 from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:23, build 03-Oct-2018 12:06:21 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:06:21 from websockets.h:9, build 03-Oct-2018 12:06:21 from websockets.cpp:1: build 03-Oct-2018 12:06:21 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:21 template class auto_ptr; build 03-Oct-2018 12:06:21 ^ build 03-Oct-2018 12:06:21 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:06:21 from websockets.h:9, build 03-Oct-2018 12:06:21 from websockets.cpp:1: build 03-Oct-2018 12:06:21 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:21 shared_ptr & operator=( std::auto_ptr && r ) build 03-Oct-2018 12:06:21 ^ build 03-Oct-2018 12:06:21 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:06:21 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:06:21 from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:23, build 03-Oct-2018 12:06:21 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:06:21 from websockets.h:9, build 03-Oct-2018 12:06:21 from websockets.cpp:1: build 03-Oct-2018 12:06:21 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:21 template class auto_ptr; build 03-Oct-2018 12:06:21 ^ build 03-Oct-2018 12:06:21 In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0, build 03-Oct-2018 12:06:21 from websockets.h:9, build 03-Oct-2018 12:06:21 from websockets.cpp:1: build 03-Oct-2018 12:06:21 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)': build 03-Oct-2018 12:06:21 /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] build 03-Oct-2018 12:06:21 this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); build 03-Oct-2018 12:06:21 ^ build 03-Oct-2018 12:06:21 In file included from /usr/include/c++/5/memory:81:0, build 03-Oct-2018 12:06:21 from /usr/local/lib/R/site-library/BH/include/boost/config/no_tr1/memory.hpp:21, build 03-Oct-2018 12:06:21 from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:23, build 03-Oct-2018 12:06:21 from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, build 03-Oct-2018 12:06:21 from websockets.h:9, build 03-Oct-2018 12:06:21 from websockets.cpp:1: build 03-Oct-2018 12:06:21 /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here build 03-Oct-2018 12:06:21 template class auto_ptr; build 03-Oct-2018 12:06:21 ^ build 03-Oct-2018 12:06:22 cp -p -f libuv/m4/lt_obsolete.m4 libuv/m4/lt~obsolete.m4 build 03-Oct-2018 12:06:22 (cd libuv \ build 03-Oct-2018 12:06:22 && touch aclocal.m4 \ build 03-Oct-2018 12:06:22 && touch -r aclocal.m4 configure Makefile.in \ build 03-Oct-2018 12:06:22 && chmod +x configure \ build 03-Oct-2018 12:06:22 && CC="gcc -std=gnu99" CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro" ./configure "--quiet") build 03-Oct-2018 12:06:25 make --directory=libuv \ build 03-Oct-2018 12:06:25 HAVE_DTRACE=0 build 03-Oct-2018 12:06:25 make[1]: Entering directory '/tmp/RtmplAM65O/R.INSTALLb76417a2171/httpuv/src/libuv' build 03-Oct-2018 12:06:25 CC src/libuv_la-fs-poll.lo build 03-Oct-2018 12:06:26 CC src/libuv_la-inet.lo build 03-Oct-2018 12:06:27 CC src/libuv_la-threadpool.lo build 03-Oct-2018 12:06:27 CC src/libuv_la-uv-common.lo build 03-Oct-2018 12:06:28 CC src/libuv_la-version.lo build 03-Oct-2018 12:06:29 CC src/unix/libuv_la-async.lo build 03-Oct-2018 12:06:29 CC src/unix/libuv_la-core.lo build 03-Oct-2018 12:06:30 CC src/unix/libuv_la-dl.lo build 03-Oct-2018 12:06:31 CC src/unix/libuv_la-fs.lo build 03-Oct-2018 12:06:32 CC src/unix/libuv_la-getaddrinfo.lo build 03-Oct-2018 12:06:33 CC src/unix/libuv_la-getnameinfo.lo build 03-Oct-2018 12:06:33 CC src/unix/libuv_la-loop-watcher.lo build 03-Oct-2018 12:06:34 CC src/unix/libuv_la-loop.lo build 03-Oct-2018 12:06:35 CC src/unix/libuv_la-pipe.lo build 03-Oct-2018 12:06:35 CC src/unix/libuv_la-poll.lo build 03-Oct-2018 12:06:36 CC src/unix/libuv_la-process.lo build 03-Oct-2018 12:06:37 CC src/unix/libuv_la-signal.lo build 03-Oct-2018 12:06:38 CC src/unix/libuv_la-stream.lo build 03-Oct-2018 12:06:39 CC src/unix/libuv_la-tcp.lo build 03-Oct-2018 12:06:39 CC src/unix/libuv_la-thread.lo build 03-Oct-2018 12:06:40 CC src/unix/libuv_la-timer.lo build 03-Oct-2018 12:06:41 CC src/unix/libuv_la-tty.lo build 03-Oct-2018 12:06:41 CC src/unix/libuv_la-udp.lo build 03-Oct-2018 12:06:42 CC src/unix/libuv_la-linux-core.lo build 03-Oct-2018 12:06:43 CC src/unix/libuv_la-linux-inotify.lo build 03-Oct-2018 12:06:44 CC src/unix/libuv_la-linux-syscalls.lo build 03-Oct-2018 12:06:45 CC src/unix/libuv_la-procfs-exepath.lo build 03-Oct-2018 12:06:45 CC src/unix/libuv_la-proctitle.lo build 03-Oct-2018 12:06:46 CC src/unix/libuv_la-sysinfo-loadavg.lo build 03-Oct-2018 12:06:47 CC src/unix/libuv_la-sysinfo-memory.lo build 03-Oct-2018 12:06:47 CCLD libuv.la build 03-Oct-2018 12:06:47 ar: `u' modifier ignored since `D' is the default (see `U') build 03-Oct-2018 12:06:47 make[1]: Leaving directory '/tmp/RtmplAM65O/R.INSTALLb76417a2171/httpuv/src/libuv' build 03-Oct-2018 12:06:47 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -pthread -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/later/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c http-parser/http_parser.c -o http-parser/http_parser.o build 03-Oct-2018 12:06:48 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -pthread -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/later/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sha1/sha1.c -o sha1/sha1.o build 03-Oct-2018 12:06:48 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -pthread -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/later/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base64/base64.cpp -o base64/base64.o build 03-Oct-2018 12:06:48 g++ -std=c++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o httpuv.so RcppExports-legacy.o RcppExports.o callback.o callbackqueue.o filedatasource-unix.o filedatasource-win.o http.o httprequest.o httpresponse.o httpuv.o md5.o set_invalid_parameter.o socket.o thread.o utils.o uvutil.o webapplication.o websockets-base.o websockets-hixie76.o websockets-hybi03.o websockets-ietf.o websockets.o ./libuv/.libs/libuv.a ./http-parser/http_parser.o ./sha1/sha1.o ./base64/base64.o -pthread -L/usr/lib/R/lib -lR build 03-Oct-2018 12:06:49 installing to /usr/local/lib/R/site-library/httpuv/libs build 03-Oct-2018 12:06:49 ** R build 03-Oct-2018 12:06:49 ** demo build 03-Oct-2018 12:06:49 ** preparing package for lazy loading build 03-Oct-2018 12:06:49 Warning: replacing previous import by 'Rcpp::evalCpp' when loading 'later' build 03-Oct-2018 12:06:49 ** help build 03-Oct-2018 12:06:49 *** installing help indices build 03-Oct-2018 12:06:49 ** building package indices build 03-Oct-2018 12:06:49 ** testing if installed package can be loaded build 03-Oct-2018 12:06:49 Warning: replacing previous import by 'Rcpp::evalCpp' when loading 'later' build 03-Oct-2018 12:06:49 * DONE (httpuv) build 03-Oct-2018 12:06:49 * installing *source* package 'webshot' ... build 03-Oct-2018 12:06:49 ** package 'webshot' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:06:49 ** R build 03-Oct-2018 12:06:49 ** inst build 03-Oct-2018 12:06:49 ** preparing package for lazy loading build 03-Oct-2018 12:06:50 ** help build 03-Oct-2018 12:06:50 *** installing help indices build 03-Oct-2018 12:06:50 ** building package indices build 03-Oct-2018 12:06:50 ** testing if installed package can be loaded build 03-Oct-2018 12:06:50 * DONE (webshot) build 03-Oct-2018 12:06:50 * installing *source* package 'knitr' ... build 03-Oct-2018 12:06:50 ** package 'knitr' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:06:50 ** R build 03-Oct-2018 12:06:50 ** demo build 03-Oct-2018 12:06:50 ** inst build 03-Oct-2018 12:06:50 ** preparing package for lazy loading build 03-Oct-2018 12:06:51 ** help build 03-Oct-2018 12:06:51 *** installing help indices build 03-Oct-2018 12:06:51 ** building package indices build 03-Oct-2018 12:06:51 ** installing vignettes build 03-Oct-2018 12:06:51 ** testing if installed package can be loaded build 03-Oct-2018 12:06:51 * DONE (knitr) build 03-Oct-2018 12:06:52 * installing *source* package 'ggplot2' ... build 03-Oct-2018 12:06:52 ** package 'ggplot2' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:06:52 ** R build 03-Oct-2018 12:06:52 ** data build 03-Oct-2018 12:06:52 *** moving datasets to lazyload DB build 03-Oct-2018 12:06:53 ** inst build 03-Oct-2018 12:06:53 ** preparing package for lazy loading build 03-Oct-2018 12:06:53 ** help build 03-Oct-2018 12:06:54 *** installing help indices build 03-Oct-2018 12:06:55 *** copying figures build 03-Oct-2018 12:06:55 ** building package indices build 03-Oct-2018 12:06:55 ** installing vignettes build 03-Oct-2018 12:06:55 ** testing if installed package can be loaded build 03-Oct-2018 12:06:55 * DONE (ggplot2) build 03-Oct-2018 12:06:56 * installing *source* package 'shiny' ... build 03-Oct-2018 12:06:56 ** package 'shiny' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:06:56 ** R build 03-Oct-2018 12:06:56 ** inst build 03-Oct-2018 12:06:56 ** preparing package for lazy loading build 03-Oct-2018 12:06:57 Warning: replacing previous import by 'Rcpp::evalCpp' when loading 'later' build 03-Oct-2018 12:06:57 ** help build 03-Oct-2018 12:06:57 *** installing help indices build 03-Oct-2018 12:06:58 ** building package indices build 03-Oct-2018 12:06:58 ** testing if installed package can be loaded build 03-Oct-2018 12:06:58 Warning: replacing previous import by 'Rcpp::evalCpp' when loading 'later' build 03-Oct-2018 12:06:58 * DONE (shiny) build 03-Oct-2018 12:06:59 * installing *source* package 'rmarkdown' ... build 03-Oct-2018 12:06:59 ** package 'rmarkdown' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:06:59 ** R build 03-Oct-2018 12:06:59 ** inst build 03-Oct-2018 12:06:59 ** preparing package for lazy loading build 03-Oct-2018 12:06:59 ** help build 03-Oct-2018 12:06:59 *** installing help indices build 03-Oct-2018 12:07:00 ** building package indices build 03-Oct-2018 12:07:00 ** testing if installed package can be loaded build 03-Oct-2018 12:07:00 * DONE (rmarkdown) build 03-Oct-2018 12:07:01 * installing *source* package 'magick' ... build 03-Oct-2018 12:07:01 ** package 'magick' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:07:01 Found pkg-config cflags and libs! build 03-Oct-2018 12:07:01 Using PKG_CFLAGS=-fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 build 03-Oct-2018 12:07:01 Using PKG_LIBS=-lMagick++-6.Q16 -lMagickWand-6.Q16 -lMagickCore-6.Q16 build 03-Oct-2018 12:07:01 ** libs build 03-Oct-2018 12:07:01 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o build 03-Oct-2018 12:07:08 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c animation.cpp -o animation.o build 03-Oct-2018 12:07:11 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c attributes.cpp -o attributes.o build 03-Oct-2018 12:07:17 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base.cpp -o base.o build 03-Oct-2018 12:07:22 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c color.cpp -o color.o build 03-Oct-2018 12:07:25 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c composite.cpp -o composite.o build 03-Oct-2018 12:07:29 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c config.cc -o config.o build 03-Oct-2018 12:07:34 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c convolve.cpp -o convolve.o build 03-Oct-2018 12:07:37 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c device.cpp -o device.o build 03-Oct-2018 12:07:42 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c edit.cpp -o edit.o build 03-Oct-2018 12:07:47 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fonts.cpp -o fonts.o build 03-Oct-2018 12:07:47 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c options.cpp -o options.o build 03-Oct-2018 12:07:50 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c properties.cpp -o properties.o build 03-Oct-2018 12:07:55 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c resize.cpp -o resize.o build 03-Oct-2018 12:07:59 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I/usr/include/x86_64-linux-gnu//ImageMagick-6 -I/usr/include/ImageMagick-6 -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transformations.cpp -o transformations.o build 03-Oct-2018 12:08:03 g++ -std=c++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o magick.so RcppExports.o animation.o attributes.o base.o color.o composite.o config.o convolve.o device.o edit.o fonts.o options.o properties.o resize.o transformations.o -lMagick++-6.Q16 -lMagickWand-6.Q16 -lMagickCore-6.Q16 -L/usr/lib/R/lib -lR build 03-Oct-2018 12:08:03 installing to /usr/local/lib/R/site-library/magick/libs build 03-Oct-2018 12:08:03 ** R build 03-Oct-2018 12:08:03 ** inst build 03-Oct-2018 12:08:03 ** preparing package for lazy loading build 03-Oct-2018 12:08:03 ** help build 03-Oct-2018 12:08:04 *** installing help indices build 03-Oct-2018 12:08:04 ** building package indices build 03-Oct-2018 12:08:04 ** installing vignettes build 03-Oct-2018 12:08:04 ** testing if installed package can be loaded build 03-Oct-2018 12:08:04 * DONE (magick) build 03-Oct-2018 12:08:04 * installing *source* package 'miniUI' ... build 03-Oct-2018 12:08:04 ** package 'miniUI' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:08:04 ** R build 03-Oct-2018 12:08:04 ** inst build 03-Oct-2018 12:08:04 ** preparing package for lazy loading build 03-Oct-2018 12:08:04 Warning: replacing previous import by 'Rcpp::evalCpp' when loading 'later' build 03-Oct-2018 12:08:04 ** help build 03-Oct-2018 12:08:04 *** installing help indices build 03-Oct-2018 12:08:04 ** building package indices build 03-Oct-2018 12:08:04 ** testing if installed package can be loaded build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'Rcpp::evalCpp' when loading 'later' build 03-Oct-2018 12:08:05 * DONE (miniUI) build 03-Oct-2018 12:08:05 * installing *source* package 'crosstalk' ... build 03-Oct-2018 12:08:05 ** package 'crosstalk' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:08:05 ** R build 03-Oct-2018 12:08:05 ** inst build 03-Oct-2018 12:08:05 ** preparing package for lazy loading build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'Rcpp::evalCpp' when loading 'later' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::validateCssUnit' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::br' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::tags' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::div' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::h1' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::h2' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::h3' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::h4' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::h5' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::h6' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::knit_print.html' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::tagSetChildren' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::includeScript' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::em' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::tagAppendChild' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::is.singleton' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::includeHTML' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::includeMarkdown' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::code' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::tagList' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::a' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::tagAppendAttributes' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::singleton' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::hr' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::p' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::suppressDependencies' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::tagAppendChildren' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::includeText' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::pre' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::span' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::withTags' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::htmlTemplate' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::img' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::tag' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::includeCSS' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::knit_print.shiny.tag' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::knit_print.shiny.tag.list' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::strong' when loading 'crosstalk' build 03-Oct-2018 12:08:05 Warning: replacing previous import by 'shiny::HTML' when loading 'crosstalk' build 03-Oct-2018 12:08:05 ** help build 03-Oct-2018 12:08:05 *** installing help indices build 03-Oct-2018 12:08:05 ** building package indices build 03-Oct-2018 12:08:05 ** testing if installed package can be loaded build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'Rcpp::evalCpp' when loading 'later' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::validateCssUnit' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::br' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::tags' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::div' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::h1' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::h2' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::h3' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::h4' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::h5' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::h6' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::knit_print.html' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::tagSetChildren' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::includeScript' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::em' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::tagAppendChild' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::is.singleton' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::includeHTML' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::includeMarkdown' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::code' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::tagList' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::a' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::tagAppendAttributes' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::singleton' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::hr' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::p' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::suppressDependencies' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::tagAppendChildren' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::includeText' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::pre' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::span' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::withTags' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::htmlTemplate' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::img' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::tag' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::includeCSS' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::knit_print.shiny.tag' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::knit_print.shiny.tag.list' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::strong' when loading 'crosstalk' build 03-Oct-2018 12:08:06 Warning: replacing previous import by 'shiny::HTML' when loading 'crosstalk' build 03-Oct-2018 12:08:06 * DONE (crosstalk) build 03-Oct-2018 12:08:06 * installing *source* package 'manipulateWidget' ... build 03-Oct-2018 12:08:06 ** package 'manipulateWidget' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:08:06 ** R build 03-Oct-2018 12:08:06 ** inst build 03-Oct-2018 12:08:06 ** preparing package for lazy loading build 03-Oct-2018 12:08:07 Warning: replacing previous import by 'Rcpp::evalCpp' when loading 'later' build 03-Oct-2018 12:08:07 ** help build 03-Oct-2018 12:08:07 *** installing help indices build 03-Oct-2018 12:08:07 ** building package indices build 03-Oct-2018 12:08:07 ** installing vignettes build 03-Oct-2018 12:08:07 ** testing if installed package can be loaded build 03-Oct-2018 12:08:07 Warning: replacing previous import by 'Rcpp::evalCpp' when loading 'later' build 03-Oct-2018 12:08:07 * DONE (manipulateWidget) build 03-Oct-2018 12:08:08 * installing *source* package 'rgl' ... build 03-Oct-2018 12:08:08 ** package 'rgl' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:08:08 checking for gcc... gcc -std=gnu99 build 03-Oct-2018 12:08:08 checking whether the C compiler works... yes build 03-Oct-2018 12:08:08 checking for C compiler default output file name... a.out build 03-Oct-2018 12:08:09 checking for suffix of executables... build 03-Oct-2018 12:08:09 checking whether we are cross compiling... no build 03-Oct-2018 12:08:09 checking for suffix of object files... o build 03-Oct-2018 12:08:09 checking whether we are using the GNU C compiler... yes build 03-Oct-2018 12:08:09 checking whether gcc -std=gnu99 accepts -g... yes build 03-Oct-2018 12:08:09 checking for gcc -std=gnu99 option to accept ISO C89... none needed build 03-Oct-2018 12:08:09 checking how to run the C preprocessor... gcc -std=gnu99 -E build 03-Oct-2018 12:08:09 checking for gcc... (cached) gcc -std=gnu99 build 03-Oct-2018 12:08:09 checking whether we are using the GNU C compiler... (cached) yes build 03-Oct-2018 12:08:09 checking whether gcc -std=gnu99 accepts -g... (cached) yes build 03-Oct-2018 12:08:09 checking for gcc -std=gnu99 option to accept ISO C89... (cached) none needed build 03-Oct-2018 12:08:09 checking for libpng-config... yes build 03-Oct-2018 12:08:09 configure: using libpng-config build 03-Oct-2018 12:08:09 configure: using libpng dynamic linkage build 03-Oct-2018 12:08:09 checking for X... libraries , headers build 03-Oct-2018 12:08:09 checking GL/gl.h usability... yes build 03-Oct-2018 12:08:09 checking GL/gl.h presence... yes build 03-Oct-2018 12:08:09 checking for GL/gl.h... yes build 03-Oct-2018 12:08:09 checking GL/glu.h usability... yes build 03-Oct-2018 12:08:09 checking GL/glu.h presence... yes build 03-Oct-2018 12:08:09 checking for GL/glu.h... yes build 03-Oct-2018 12:08:09 checking for glEnd in -lGL... yes build 03-Oct-2018 12:08:09 checking for gluProject in -lGLU... yes build 03-Oct-2018 12:08:09 checking for pkg-config... yes build 03-Oct-2018 12:08:09 configure: using Freetype and FTGL build 03-Oct-2018 12:08:09 configure: creating ./config.status build 03-Oct-2018 12:08:09 config.status: creating src/Makevars build 03-Oct-2018 12:08:09 ** libs build 03-Oct-2018 12:08:09 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ABCLineSet.cpp -o ABCLineSet.o build 03-Oct-2018 12:08:10 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c BBoxDeco.cpp -o BBoxDeco.o build 03-Oct-2018 12:08:10 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Background.cpp -o Background.o build 03-Oct-2018 12:08:10 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ClipPlane.cpp -o ClipPlane.o build 03-Oct-2018 12:08:11 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Color.cpp -o Color.o build 03-Oct-2018 12:08:11 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Disposable.cpp -o Disposable.o build 03-Oct-2018 12:08:11 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Light.cpp -o Light.o build 03-Oct-2018 12:08:11 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c LineSet.cpp -o LineSet.o build 03-Oct-2018 12:08:11 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c LineStripSet.cpp -o LineStripSet.o build 03-Oct-2018 12:08:12 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Material.cpp -o Material.o build 03-Oct-2018 12:08:12 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c NULLgui.cpp -o NULLgui.o build 03-Oct-2018 12:08:12 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c PlaneSet.cpp -o PlaneSet.o build 03-Oct-2018 12:08:13 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c PointSet.cpp -o PointSet.o build 03-Oct-2018 12:08:13 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c PrimitiveSet.cpp -o PrimitiveSet.o build 03-Oct-2018 12:08:13 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RenderContext.cpp -o RenderContext.o build 03-Oct-2018 12:08:13 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Shape.cpp -o Shape.o build 03-Oct-2018 12:08:13 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SphereMesh.cpp -o SphereMesh.o build 03-Oct-2018 12:08:14 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SphereSet.cpp -o SphereSet.o build 03-Oct-2018 12:08:14 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SpriteSet.cpp -o SpriteSet.o build 03-Oct-2018 12:08:14 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c String.cpp -o String.o build 03-Oct-2018 12:08:14 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Surface.cpp -o Surface.o build 03-Oct-2018 12:08:15 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c TextSet.cpp -o TextSet.o build 03-Oct-2018 12:08:15 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Texture.cpp -o Texture.o build 03-Oct-2018 12:08:15 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Viewpoint.cpp -o Viewpoint.o build 03-Oct-2018 12:08:15 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c api.cpp -o api.o build 03-Oct-2018 12:08:16 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c assert.cpp -o assert.o build 03-Oct-2018 12:08:16 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c callbacks.cpp -o callbacks.o build 03-Oct-2018 12:08:16 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c device.cpp -o device.o build 03-Oct-2018 12:08:17 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devicemanager.cpp -o devicemanager.o build 03-Oct-2018 12:08:17 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fps.cpp -o fps.o build 03-Oct-2018 12:08:17 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ftgl.cpp -o ftgl.o build 03-Oct-2018 12:08:18 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c geom.cpp -o geom.o build 03-Oct-2018 12:08:19 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gl2ps.c -o gl2ps.o build 03-Oct-2018 12:08:20 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c glErrors.cpp -o glErrors.o build 03-Oct-2018 12:08:20 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c glgui.cpp -o glgui.o build 03-Oct-2018 12:08:20 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gui.cpp -o gui.o build 03-Oct-2018 12:08:21 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.cpp -o init.o build 03-Oct-2018 12:08:21 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c par3d.cpp -o par3d.o build 03-Oct-2018 12:08:22 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pixmap.cpp -o pixmap.o build 03-Oct-2018 12:08:22 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c platform.cpp -o platform.o build 03-Oct-2018 12:08:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pretty.c -o pretty.o build 03-Oct-2018 12:08:22 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c render.cpp -o render.o build 03-Oct-2018 12:08:22 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rglmath.cpp -o rglmath.o build 03-Oct-2018 12:08:22 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rglview.cpp -o rglview.o build 03-Oct-2018 12:08:23 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scene.cpp -o scene.o build 03-Oct-2018 12:08:23 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c select.cpp -o select.o build 03-Oct-2018 12:08:23 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c subscene.cpp -o subscene.o build 03-Oct-2018 12:08:24 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c win32gui.cpp -o win32gui.o build 03-Oct-2018 12:08:24 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c win32lib.cpp -o win32lib.o build 03-Oct-2018 12:08:24 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c x11gui.cpp -o x11gui.o build 03-Oct-2018 12:08:25 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c x11lib.cpp -o x11lib.o build 03-Oct-2018 12:08:25 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o rgl.so ABCLineSet.o BBoxDeco.o Background.o ClipPlane.o Color.o Disposable.o Light.o LineSet.o LineStripSet.o Material.o NULLgui.o PlaneSet.o PointSet.o PrimitiveSet.o RenderContext.o Shape.o SphereMesh.o SphereSet.o SpriteSet.o String.o Surface.o TextSet.o Texture.o Viewpoint.o api.o assert.o callbacks.o device.o devicemanager.o fps.o ftgl.o geom.o gl2ps.o glErrors.o glgui.o gui.o init.o par3d.o pixmap.o platform.o pretty.o render.o rglmath.o rglview.o scene.o select.o subscene.o win32gui.o win32lib.o x11gui.o x11lib.o -lGLU -lGL -lpng12 -lX11 -lfreetype -L/usr/lib/R/lib -lR build 03-Oct-2018 12:08:25 installing to /usr/local/lib/R/site-library/rgl/libs build 03-Oct-2018 12:08:25 ** R build 03-Oct-2018 12:08:25 ** demo build 03-Oct-2018 12:08:25 ** inst build 03-Oct-2018 12:08:25 ** preparing package for lazy loading build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'Rcpp::evalCpp' when loading 'later' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::validateCssUnit' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::br' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::tags' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::div' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::h1' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::h2' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::h3' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::h4' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::h5' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::h6' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::knit_print.html' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::tagSetChildren' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::includeScript' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::em' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::tagAppendChild' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::is.singleton' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::includeHTML' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::includeMarkdown' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::code' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::tagList' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::a' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::tagAppendAttributes' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::singleton' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::hr' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::p' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::suppressDependencies' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::tagAppendChildren' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::includeText' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::pre' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::span' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::withTags' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::htmlTemplate' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::img' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::tag' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::includeCSS' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::knit_print.shiny.tag' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::knit_print.shiny.tag.list' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::strong' when loading 'crosstalk' build 03-Oct-2018 12:08:26 Warning: replacing previous import by 'shiny::HTML' when loading 'crosstalk' build 03-Oct-2018 12:08:26 ** help build 03-Oct-2018 12:08:26 *** installing help indices build 03-Oct-2018 12:08:26 ** building package indices build 03-Oct-2018 12:08:27 ** installing vignettes build 03-Oct-2018 12:08:27 ** testing if installed package can be loaded build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'Rcpp::evalCpp' when loading 'later' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::validateCssUnit' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::br' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::tags' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::div' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::h1' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::h2' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::h3' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::h4' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::h5' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::h6' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::knit_print.html' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::tagSetChildren' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::includeScript' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::em' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::tagAppendChild' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::is.singleton' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::includeHTML' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::includeMarkdown' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::code' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::tagList' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::a' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::tagAppendAttributes' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::singleton' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::hr' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::p' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::suppressDependencies' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::tagAppendChildren' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::includeText' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::pre' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::span' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::withTags' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::htmlTemplate' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::img' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::tag' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::includeCSS' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::knit_print.shiny.tag' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::knit_print.shiny.tag.list' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::strong' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning: replacing previous import by 'shiny::HTML' when loading 'crosstalk' build 03-Oct-2018 12:08:27 Warning in rgl.init(initValue, onlyNULL) : build 03-Oct-2018 12:08:27 RGL: unable to open X11 display build 03-Oct-2018 12:08:27 Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE build 03-Oct-2018 12:08:27 * DONE (rgl) build 03-Oct-2018 12:08:27  build 03-Oct-2018 12:08:27 The downloaded source packages are in build 03-Oct-2018 12:08:27 '/tmp/RtmpDIu2pB/downloaded_packages' build 03-Oct-2018 12:08:33 Removing intermediate container 5122bf7048a1 build 03-Oct-2018 12:08:33 ---> 927f98c91467 build 03-Oct-2018 12:08:33 Step 7/15 : RUN apt-get install -y default-jre && R CMD javareconf build 03-Oct-2018 12:08:33 ---> Running in 7eddae435c7e build 03-Oct-2018 12:08:35 Reading package lists... build 03-Oct-2018 12:08:35 Building dependency tree... build 03-Oct-2018 12:08:35 Reading state information... build 03-Oct-2018 12:08:35 The following additional packages will be installed: build 03-Oct-2018 12:08:35 ca-certificates-java default-jre-headless fonts-dejavu-extra java-common build 03-Oct-2018 12:08:35 libasound2 libasound2-data libasyncns0 libflac8 libgif7 libjson-c2 libnspr4 build 03-Oct-2018 12:08:35 libnss3 libnss3-nssdb libogg0 libpcsclite1 libpulse0 libsndfile1 libvorbis0a build 03-Oct-2018 12:08:35 libvorbisenc2 libwrap0 openjdk-8-jre openjdk-8-jre-headless tcpd build 03-Oct-2018 12:08:35 Suggested packages: build 03-Oct-2018 12:08:35 default-java-plugin libasound2-plugins alsa-utils pcscd pulseaudio build 03-Oct-2018 12:08:35 icedtea-8-plugin libnss-mdns fonts-ipafont-gothic fonts-ipafont-mincho build 03-Oct-2018 12:08:35 fonts-wqy-microhei fonts-wqy-zenhei fonts-indic build 03-Oct-2018 12:08:35 The following NEW packages will be installed: build 03-Oct-2018 12:08:35 ca-certificates-java default-jre default-jre-headless fonts-dejavu-extra build 03-Oct-2018 12:08:35 java-common libasound2 libasound2-data libasyncns0 libflac8 libgif7 build 03-Oct-2018 12:08:35 libjson-c2 libnspr4 libnss3 libnss3-nssdb libogg0 libpcsclite1 libpulse0 build 03-Oct-2018 12:08:35 libsndfile1 libvorbis0a libvorbisenc2 libwrap0 openjdk-8-jre build 03-Oct-2018 12:08:35 openjdk-8-jre-headless tcpd build 03-Oct-2018 12:08:35 0 upgraded, 24 newly installed, 0 to remove and 0 not upgraded. build 03-Oct-2018 12:08:35 Need to get 31.4 MB of archives. build 03-Oct-2018 12:08:35 After this operation, 116 MB of additional disk space will be used. build 03-Oct-2018 12:08:35 Get:1 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjson-c2 amd64 0.11-4ubuntu2 [22.3 kB] build 03-Oct-2018 12:08:35 Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 libasyncns0 amd64 0.8-5build1 [12.3 kB] build 03-Oct-2018 12:08:35 Get:3 http://archive.ubuntu.com/ubuntu xenial/main amd64 libogg0 amd64 1.3.2-1 [17.2 kB] build 03-Oct-2018 12:08:36 Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 libwrap0 amd64 7.6.q-25 [46.2 kB] build 03-Oct-2018 12:08:36 Get:5 http://archive.ubuntu.com/ubuntu xenial/main amd64 java-common all 0.56ubuntu2 [7742 B] build 03-Oct-2018 12:08:36 Get:6 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libnspr4 amd64 2:4.13.1-0ubuntu0.16.04.1 [112 kB] build 03-Oct-2018 12:08:36 Get:7 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libnss3-nssdb all 2:3.28.4-0ubuntu0.16.04.3 [10.6 kB] build 03-Oct-2018 12:08:36 Get:8 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libnss3 amd64 2:3.28.4-0ubuntu0.16.04.3 [1148 kB] build 03-Oct-2018 12:08:36 Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpcsclite1 amd64 1.8.14-1ubuntu1.16.04.1 [21.4 kB] build 03-Oct-2018 12:08:36 Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 openjdk-8-jre-headless amd64 8u181-b13-0ubuntu0.16.04.1 [27.0 MB] build 03-Oct-2018 12:08:37 Get:11 http://archive.ubuntu.com/ubuntu xenial/main amd64 default-jre-headless amd64 2:1.8-56ubuntu2 [4380 B] build 03-Oct-2018 12:08:37 Get:12 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 ca-certificates-java all 20160321ubuntu1 [12.5 kB] build 03-Oct-2018 12:08:37 Get:13 http://archive.ubuntu.com/ubuntu xenial/main amd64 libasound2-data all 1.1.0-0ubuntu1 [29.4 kB] build 03-Oct-2018 12:08:37 Get:14 http://archive.ubuntu.com/ubuntu xenial/main amd64 libasound2 amd64 1.1.0-0ubuntu1 [350 kB] build 03-Oct-2018 12:08:37 Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgif7 amd64 5.1.4-0.3~16.04 [30.5 kB] build 03-Oct-2018 12:08:37 Get:16 http://archive.ubuntu.com/ubuntu xenial/main amd64 libflac8 amd64 1.3.1-4 [210 kB] build 03-Oct-2018 12:08:37 Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libvorbis0a amd64 1.3.5-3ubuntu0.2 [86.0 kB] build 03-Oct-2018 12:08:37 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libvorbisenc2 amd64 1.3.5-3ubuntu0.2 [70.6 kB] build 03-Oct-2018 12:08:37 Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libsndfile1 amd64 1.0.25-10ubuntu0.16.04.1 [138 kB] build 03-Oct-2018 12:08:37 Get:20 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpulse0 amd64 1:8.0-0ubuntu3.10 [249 kB] build 03-Oct-2018 12:08:37 Get:21 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 openjdk-8-jre amd64 8u181-b13-0ubuntu0.16.04.1 [69.4 kB] build 03-Oct-2018 12:08:37 Get:22 http://archive.ubuntu.com/ubuntu xenial/main amd64 default-jre amd64 2:1.8-56ubuntu2 [980 B] build 03-Oct-2018 12:08:37 Get:23 http://archive.ubuntu.com/ubuntu xenial/main amd64 fonts-dejavu-extra all 2.35-1 [1749 kB] build 03-Oct-2018 12:08:37 Get:24 http://archive.ubuntu.com/ubuntu xenial/main amd64 tcpd amd64 7.6.q-25 [23.0 kB] build 03-Oct-2018 12:08:38 debconf: delaying package configuration, since apt-utils is not installed build 03-Oct-2018 12:08:38 Fetched 31.4 MB in 2s (14.9 MB/s) build 03-Oct-2018 12:08:38 Selecting previously unselected package libjson-c2:amd64. build 03-Oct-2018 12:08:38 (Reading database ... build 03-Oct-2018 12:08:38 (Reading database ... 5% build 03-Oct-2018 12:08:38 (Reading database ... 10% build 03-Oct-2018 12:08:38 (Reading database ... 15% build 03-Oct-2018 12:08:38 (Reading database ... 20% build 03-Oct-2018 12:08:38 (Reading database ... 25% build 03-Oct-2018 12:08:38 (Reading database ... 30% build 03-Oct-2018 12:08:38 (Reading database ... 35% build 03-Oct-2018 12:08:38 (Reading database ... 40% build 03-Oct-2018 12:08:38 (Reading database ... 45% build 03-Oct-2018 12:08:38 (Reading database ... 50% build 03-Oct-2018 12:08:38 (Reading database ... 55% build 03-Oct-2018 12:08:38 (Reading database ... 60% build 03-Oct-2018 12:08:38 (Reading database ... 65% build 03-Oct-2018 12:08:38 (Reading database ... 70% build 03-Oct-2018 12:08:38 (Reading database ... 75% build 03-Oct-2018 12:08:38 (Reading database ... 80% build 03-Oct-2018 12:08:38 (Reading database ... 85% build 03-Oct-2018 12:08:38 (Reading database ... 90% build 03-Oct-2018 12:08:38 (Reading database ... 95% build 03-Oct-2018 12:08:38 (Reading database ... 100% build 03-Oct-2018 12:08:38 (Reading database ... 31549 files and directories currently installed.) build 03-Oct-2018 12:08:38 Preparing to unpack .../libjson-c2_0.11-4ubuntu2_amd64.deb ... build 03-Oct-2018 12:08:38 Unpacking libjson-c2:amd64 (0.11-4ubuntu2) ... build 03-Oct-2018 12:08:38 Selecting previously unselected package libasyncns0:amd64. build 03-Oct-2018 12:08:38 Preparing to unpack .../libasyncns0_0.8-5build1_amd64.deb ... build 03-Oct-2018 12:08:38 Unpacking libasyncns0:amd64 (0.8-5build1) ... build 03-Oct-2018 12:08:39 Selecting previously unselected package libogg0:amd64. build 03-Oct-2018 12:08:39 Preparing to unpack .../libogg0_1.3.2-1_amd64.deb ... build 03-Oct-2018 12:08:39 Unpacking libogg0:amd64 (1.3.2-1) ... build 03-Oct-2018 12:08:39 Selecting previously unselected package libwrap0:amd64. build 03-Oct-2018 12:08:39 Preparing to unpack .../libwrap0_7.6.q-25_amd64.deb ... build 03-Oct-2018 12:08:39 Unpacking libwrap0:amd64 (7.6.q-25) ... build 03-Oct-2018 12:08:40 Selecting previously unselected package java-common. build 03-Oct-2018 12:08:40 Preparing to unpack .../java-common_0.56ubuntu2_all.deb ... build 03-Oct-2018 12:08:40 Unpacking java-common (0.56ubuntu2) ... build 03-Oct-2018 12:08:40 Selecting previously unselected package libnspr4:amd64. build 03-Oct-2018 12:08:40 Preparing to unpack .../libnspr4_2%3a4.13.1-0ubuntu0.16.04.1_amd64.deb ... build 03-Oct-2018 12:08:40 Unpacking libnspr4:amd64 (2:4.13.1-0ubuntu0.16.04.1) ... build 03-Oct-2018 12:08:40 Selecting previously unselected package libnss3-nssdb. build 03-Oct-2018 12:08:40 Preparing to unpack .../libnss3-nssdb_2%3a3.28.4-0ubuntu0.16.04.3_all.deb ... build 03-Oct-2018 12:08:40 Unpacking libnss3-nssdb (2:3.28.4-0ubuntu0.16.04.3) ... build 03-Oct-2018 12:08:40 Selecting previously unselected package libnss3:amd64. build 03-Oct-2018 12:08:41 Preparing to unpack .../libnss3_2%3a3.28.4-0ubuntu0.16.04.3_amd64.deb ... build 03-Oct-2018 12:08:41 Unpacking libnss3:amd64 (2:3.28.4-0ubuntu0.16.04.3) ... build 03-Oct-2018 12:08:41 Selecting previously unselected package libpcsclite1:amd64. build 03-Oct-2018 12:08:41 Preparing to unpack .../libpcsclite1_1.8.14-1ubuntu1.16.04.1_amd64.deb ... build 03-Oct-2018 12:08:41 Unpacking libpcsclite1:amd64 (1.8.14-1ubuntu1.16.04.1) ... build 03-Oct-2018 12:08:41 Selecting previously unselected package openjdk-8-jre-headless:amd64. build 03-Oct-2018 12:08:41 Preparing to unpack .../openjdk-8-jre-headless_8u181-b13-0ubuntu0.16.04.1_amd64.deb ... build 03-Oct-2018 12:08:42 Unpacking openjdk-8-jre-headless:amd64 (8u181-b13-0ubuntu0.16.04.1) ... build 03-Oct-2018 12:08:44 Selecting previously unselected package default-jre-headless. build 03-Oct-2018 12:08:44 Preparing to unpack .../default-jre-headless_2%3a1.8-56ubuntu2_amd64.deb ... build 03-Oct-2018 12:08:45 Unpacking default-jre-headless (2:1.8-56ubuntu2) ... build 03-Oct-2018 12:08:45 Selecting previously unselected package ca-certificates-java. build 03-Oct-2018 12:08:45 Preparing to unpack .../ca-certificates-java_20160321ubuntu1_all.deb ... build 03-Oct-2018 12:08:45 Unpacking ca-certificates-java (20160321ubuntu1) ... build 03-Oct-2018 12:08:45 Selecting previously unselected package libasound2-data. build 03-Oct-2018 12:08:45 Preparing to unpack .../libasound2-data_1.1.0-0ubuntu1_all.deb ... build 03-Oct-2018 12:08:45 Unpacking libasound2-data (1.1.0-0ubuntu1) ... build 03-Oct-2018 12:08:46 Selecting previously unselected package libasound2:amd64. build 03-Oct-2018 12:08:46 Preparing to unpack .../libasound2_1.1.0-0ubuntu1_amd64.deb ... build 03-Oct-2018 12:08:46 Unpacking libasound2:amd64 (1.1.0-0ubuntu1) ... build 03-Oct-2018 12:08:46 Selecting previously unselected package libgif7:amd64. build 03-Oct-2018 12:08:46 Preparing to unpack .../libgif7_5.1.4-0.3~16.04_amd64.deb ... build 03-Oct-2018 12:08:46 Unpacking libgif7:amd64 (5.1.4-0.3~16.04) ... build 03-Oct-2018 12:08:46 Selecting previously unselected package libflac8:amd64. build 03-Oct-2018 12:08:46 Preparing to unpack .../libflac8_1.3.1-4_amd64.deb ... build 03-Oct-2018 12:08:46 Unpacking libflac8:amd64 (1.3.1-4) ... build 03-Oct-2018 12:08:47 Selecting previously unselected package libvorbis0a:amd64. build 03-Oct-2018 12:08:47 Preparing to unpack .../libvorbis0a_1.3.5-3ubuntu0.2_amd64.deb ... build 03-Oct-2018 12:08:47 Unpacking libvorbis0a:amd64 (1.3.5-3ubuntu0.2) ... build 03-Oct-2018 12:08:47 Selecting previously unselected package libvorbisenc2:amd64. build 03-Oct-2018 12:08:47 Preparing to unpack .../libvorbisenc2_1.3.5-3ubuntu0.2_amd64.deb ... build 03-Oct-2018 12:08:47 Unpacking libvorbisenc2:amd64 (1.3.5-3ubuntu0.2) ... build 03-Oct-2018 12:08:48 Selecting previously unselected package libsndfile1:amd64. build 03-Oct-2018 12:08:48 Preparing to unpack .../libsndfile1_1.0.25-10ubuntu0.16.04.1_amd64.deb ... build 03-Oct-2018 12:08:48 Unpacking libsndfile1:amd64 (1.0.25-10ubuntu0.16.04.1) ... build 03-Oct-2018 12:08:48 Selecting previously unselected package libpulse0:amd64. build 03-Oct-2018 12:08:48 Preparing to unpack .../libpulse0_1%3a8.0-0ubuntu3.10_amd64.deb ... build 03-Oct-2018 12:08:48 Unpacking libpulse0:amd64 (1:8.0-0ubuntu3.10) ... build 03-Oct-2018 12:08:49 Selecting previously unselected package openjdk-8-jre:amd64. build 03-Oct-2018 12:08:49 Preparing to unpack .../openjdk-8-jre_8u181-b13-0ubuntu0.16.04.1_amd64.deb ... build 03-Oct-2018 12:08:49 Unpacking openjdk-8-jre:amd64 (8u181-b13-0ubuntu0.16.04.1) ... build 03-Oct-2018 12:08:49 Selecting previously unselected package default-jre. build 03-Oct-2018 12:08:49 Preparing to unpack .../default-jre_2%3a1.8-56ubuntu2_amd64.deb ... build 03-Oct-2018 12:08:49 Unpacking default-jre (2:1.8-56ubuntu2) ... build 03-Oct-2018 12:08:49 Selecting previously unselected package fonts-dejavu-extra. build 03-Oct-2018 12:08:49 Preparing to unpack .../fonts-dejavu-extra_2.35-1_all.deb ... build 03-Oct-2018 12:08:49 Unpacking fonts-dejavu-extra (2.35-1) ... build 03-Oct-2018 12:08:50 Selecting previously unselected package tcpd. build 03-Oct-2018 12:08:50 Preparing to unpack .../tcpd_7.6.q-25_amd64.deb ... build 03-Oct-2018 12:08:50 Unpacking tcpd (7.6.q-25) ... build 03-Oct-2018 12:08:50 Processing triggers for man-db (2.7.5-1) ... build 03-Oct-2018 12:08:51 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 12:08:51 Processing triggers for ca-certificates (20170717~16.04.1) ... build 03-Oct-2018 12:08:51 Updating certificates in /etc/ssl/certs... build 03-Oct-2018 12:08:52 0 added, 0 removed; done. build 03-Oct-2018 12:08:52 Running hooks in /etc/ca-certificates/update.d... build 03-Oct-2018 12:08:52 done. build 03-Oct-2018 12:08:52 Processing triggers for hicolor-icon-theme (0.15-0ubuntu1.1) ... build 03-Oct-2018 12:08:52 Processing triggers for mime-support (3.59ubuntu1) ... build 03-Oct-2018 12:08:52 Processing triggers for fontconfig (2.11.94-0ubuntu1.1) ... build 03-Oct-2018 12:08:52 Setting up libjson-c2:amd64 (0.11-4ubuntu2) ... build 03-Oct-2018 12:08:53 Setting up libasyncns0:amd64 (0.8-5build1) ... build 03-Oct-2018 12:08:53 Setting up libogg0:amd64 (1.3.2-1) ... build 03-Oct-2018 12:08:53 Setting up libwrap0:amd64 (7.6.q-25) ... build 03-Oct-2018 12:08:54 Setting up java-common (0.56ubuntu2) ... build 03-Oct-2018 12:08:54 Setting up libnspr4:amd64 (2:4.13.1-0ubuntu0.16.04.1) ... build 03-Oct-2018 12:08:54 Setting up libpcsclite1:amd64 (1.8.14-1ubuntu1.16.04.1) ... build 03-Oct-2018 12:08:54 Setting up libasound2-data (1.1.0-0ubuntu1) ... build 03-Oct-2018 12:08:54 Setting up libasound2:amd64 (1.1.0-0ubuntu1) ... build 03-Oct-2018 12:08:54 Setting up libgif7:amd64 (5.1.4-0.3~16.04) ... build 03-Oct-2018 12:08:55 Setting up libflac8:amd64 (1.3.1-4) ... build 03-Oct-2018 12:08:55 Setting up libvorbis0a:amd64 (1.3.5-3ubuntu0.2) ... build 03-Oct-2018 12:08:55 Setting up libvorbisenc2:amd64 (1.3.5-3ubuntu0.2) ... build 03-Oct-2018 12:08:56 Setting up libsndfile1:amd64 (1.0.25-10ubuntu0.16.04.1) ... build 03-Oct-2018 12:08:56 Setting up libpulse0:amd64 (1:8.0-0ubuntu3.10) ... build 03-Oct-2018 12:08:56 Setting up fonts-dejavu-extra (2.35-1) ... build 03-Oct-2018 12:08:56 Setting up tcpd (7.6.q-25) ... build 03-Oct-2018 12:08:57 Setting up libnss3-nssdb (2:3.28.4-0ubuntu0.16.04.3) ... build 03-Oct-2018 12:08:57 Setting up libnss3:amd64 (2:3.28.4-0ubuntu0.16.04.3) ... build 03-Oct-2018 12:08:57 Setting up ca-certificates-java (20160321ubuntu1) ... build 03-Oct-2018 12:08:57 Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem build 03-Oct-2018 12:08:57 Adding debian:DigiCert_Assured_ID_Root_G3.pem build 03-Oct-2018 12:08:57 Adding debian:Chambers_of_Commerce_Root_-_2008.pem build 03-Oct-2018 12:08:57 Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem build 03-Oct-2018 12:08:57 Adding debian:EE_Certification_Centre_Root_CA.pem build 03-Oct-2018 12:08:57 Adding debian:Deutsche_Telekom_Root_CA_2.pem build 03-Oct-2018 12:08:57 Adding debian:Certinomis_-_Root_CA.pem build 03-Oct-2018 12:08:57 Adding debian:DigiCert_Global_Root_G2.pem build 03-Oct-2018 12:08:57 Adding debian:GeoTrust_Universal_CA_2.pem build 03-Oct-2018 12:08:57 Adding debian:DST_ACES_CA_X6.pem build 03-Oct-2018 12:08:57 Adding debian:EC-ACC.pem build 03-Oct-2018 12:08:57 Adding debian:GeoTrust_Global_CA.pem build 03-Oct-2018 12:08:57 Adding debian:Comodo_AAA_Services_root.pem build 03-Oct-2018 12:08:57 Adding debian:Certum_Root_CA.pem build 03-Oct-2018 12:08:57 Adding debian:Izenpe.com.pem build 03-Oct-2018 12:08:57 Adding debian:Entrust_Root_Certification_Authority.pem build 03-Oct-2018 12:08:57 Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem build 03-Oct-2018 12:08:57 Adding debian:Trustis_FPS_Root_CA.pem build 03-Oct-2018 12:08:57 Adding debian:SwissSign_Silver_CA_-_G2.pem build 03-Oct-2018 12:08:57 Adding debian:ACCVRAIZ1.pem build 03-Oct-2018 12:08:57 Adding debian:Atos_TrustedRoot_2011.pem build 03-Oct-2018 12:08:57 Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem build 03-Oct-2018 12:08:57 Adding debian:Entrust_Root_Certification_Authority_-_G2.pem build 03-Oct-2018 12:08:57 Adding debian:Security_Communication_RootCA2.pem build 03-Oct-2018 12:08:57 Adding debian:AddTrust_Low-Value_Services_Root.pem build 03-Oct-2018 12:08:57 Adding debian:SecureTrust_CA.pem build 03-Oct-2018 12:08:57 Adding debian:Certum_Trusted_Network_CA.pem build 03-Oct-2018 12:08:57 Adding debian:QuoVadis_Root_CA.pem build 03-Oct-2018 12:08:57 Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem build 03-Oct-2018 12:08:57 Adding debian:ACEDICOM_Root.pem build 03-Oct-2018 12:08:57 Adding debian:AddTrust_Qualified_Certificates_Root.pem build 03-Oct-2018 12:08:58 Adding debian:AddTrust_External_Root.pem build 03-Oct-2018 12:08:58 Adding debian:QuoVadis_Root_CA_3_G3.pem build 03-Oct-2018 12:08:58 Adding debian:QuoVadis_Root_CA_3.pem build 03-Oct-2018 12:08:58 Adding debian:COMODO_Certification_Authority.pem build 03-Oct-2018 12:08:58 Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem build 03-Oct-2018 12:08:58 Adding debian:QuoVadis_Root_CA_1_G3.pem build 03-Oct-2018 12:08:58 Adding debian:CNNIC_ROOT.pem build 03-Oct-2018 12:08:58 Adding debian:TeliaSonera_Root_CA_v1.pem build 03-Oct-2018 12:08:58 Adding debian:VeriSign_Universal_Root_Certification_Authority.pem build 03-Oct-2018 12:08:58 Adding debian:Certigna.pem build 03-Oct-2018 12:08:58 Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem build 03-Oct-2018 12:08:58 Adding debian:Starfield_Class_2_CA.pem build 03-Oct-2018 12:08:58 Adding debian:DigiCert_Trusted_Root_G4.pem build 03-Oct-2018 12:08:58 Adding debian:USERTrust_RSA_Certification_Authority.pem build 03-Oct-2018 12:08:58 Adding debian:GeoTrust_Universal_CA.pem build 03-Oct-2018 12:08:58 Adding debian:TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.pem build 03-Oct-2018 12:08:58 Adding debian:T-TeleSec_GlobalRoot_Class_3.pem build 03-Oct-2018 12:08:58 Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem build 03-Oct-2018 12:08:58 Adding debian:DigiCert_Assured_ID_Root_CA.pem build 03-Oct-2018 12:08:58 Adding debian:Cybertrust_Global_Root.pem build 03-Oct-2018 12:08:58 Adding debian:CA_Disig_Root_R2.pem build 03-Oct-2018 12:08:58 Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem build 03-Oct-2018 12:08:58 Adding debian:GeoTrust_Global_CA_2.pem build 03-Oct-2018 12:08:58 Adding debian:Go_Daddy_Class_2_CA.pem build 03-Oct-2018 12:08:58 Adding debian:COMODO_RSA_Certification_Authority.pem build 03-Oct-2018 12:08:58 Adding debian:Comodo_Secure_Services_root.pem build 03-Oct-2018 12:08:58 Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem build 03-Oct-2018 12:08:58 Adding debian:DigiCert_Assured_ID_Root_G2.pem build 03-Oct-2018 12:08:58 Adding debian:AffirmTrust_Premium.pem build 03-Oct-2018 12:08:58 Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem build 03-Oct-2018 12:08:58 Adding debian:Hongkong_Post_Root_CA_1.pem build 03-Oct-2018 12:08:58 Adding debian:TWCA_Global_Root_CA.pem build 03-Oct-2018 12:08:58 Adding debian:PSCProcert.pem build 03-Oct-2018 12:08:58 Adding debian:Visa_eCommerce_Root.pem build 03-Oct-2018 12:08:58 Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem build 03-Oct-2018 12:08:58 Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem build 03-Oct-2018 12:08:58 Adding debian:Buypass_Class_2_Root_CA.pem build 03-Oct-2018 12:08:58 Adding debian:CA_Disig_Root_R1.pem build 03-Oct-2018 12:08:58 Adding debian:thawte_Primary_Root_CA_-_G3.pem build 03-Oct-2018 12:08:58 Adding debian:China_Internet_Network_Information_Center_EV_Certificates_Root.pem build 03-Oct-2018 12:08:58 Adding debian:Security_Communication_EV_RootCA1.pem build 03-Oct-2018 12:08:58 Adding debian:Microsec_e-Szigno_Root_CA_2009.pem build 03-Oct-2018 12:08:58 Adding debian:Certinomis_-_Autorité_Racine.pem build 03-Oct-2018 12:08:58 Adding debian:Actalis_Authentication_Root_CA.pem build 03-Oct-2018 12:08:58 Adding debian:AddTrust_Public_Services_Root.pem build 03-Oct-2018 12:08:58 Adding debian:COMODO_ECC_Certification_Authority.pem build 03-Oct-2018 12:08:58 Adding debian:DST_Root_CA_X3.pem build 03-Oct-2018 12:08:58 Adding debian:thawte_Primary_Root_CA.pem build 03-Oct-2018 12:08:58 Adding debian:AffirmTrust_Premium_ECC.pem build 03-Oct-2018 12:08:58 Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem build 03-Oct-2018 12:08:58 Adding debian:SwissSign_Gold_CA_-_G2.pem build 03-Oct-2018 12:08:58 Adding debian:IdenTrust_Commercial_Root_CA_1.pem build 03-Oct-2018 12:08:58 Adding debian:GlobalSign_Root_CA_-_R3.pem build 03-Oct-2018 12:08:58 Adding debian:GlobalSign_Root_CA_-_R2.pem build 03-Oct-2018 12:08:58 Adding debian:Sonera_Class_2_Root_CA.pem build 03-Oct-2018 12:08:58 Adding debian:T-TeleSec_GlobalRoot_Class_2.pem build 03-Oct-2018 12:08:58 Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem build 03-Oct-2018 12:08:58 Adding debian:DigiCert_Global_Root_CA.pem build 03-Oct-2018 12:08:58 Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem build 03-Oct-2018 12:08:58 Adding debian:QuoVadis_Root_CA_2.pem build 03-Oct-2018 12:08:58 Adding debian:XRamp_Global_CA_Root.pem build 03-Oct-2018 12:08:58 Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem build 03-Oct-2018 12:08:58 Adding debian:Swisscom_Root_CA_2.pem build 03-Oct-2018 12:08:58 Adding debian:Baltimore_CyberTrust_Root.pem build 03-Oct-2018 12:08:58 Adding debian:CFCA_EV_ROOT.pem build 03-Oct-2018 12:08:58 Adding debian:Comodo_Trusted_Services_root.pem build 03-Oct-2018 12:08:58 Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2007.pem build 03-Oct-2018 12:08:58 Adding debian:Global_Chambersign_Root_-_2008.pem build 03-Oct-2018 12:08:58 Adding debian:E-Tugra_Certification_Authority.pem build 03-Oct-2018 12:08:58 Adding debian:TWCA_Root_Certification_Authority.pem build 03-Oct-2018 12:08:58 Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem build 03-Oct-2018 12:08:58 Adding debian:AffirmTrust_Commercial.pem build 03-Oct-2018 12:08:58 Adding debian:AffirmTrust_Networking.pem build 03-Oct-2018 12:08:58 Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem build 03-Oct-2018 12:08:58 Adding debian:Camerfirma_Global_Chambersign_Root.pem build 03-Oct-2018 12:08:58 Adding debian:Certplus_Class_2_Primary_CA.pem build 03-Oct-2018 12:08:58 Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem build 03-Oct-2018 12:08:58 Adding debian:GlobalSign_Root_CA.pem build 03-Oct-2018 12:08:58 Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem build 03-Oct-2018 12:08:58 Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem build 03-Oct-2018 12:08:58 Adding debian:Swisscom_Root_CA_1.pem build 03-Oct-2018 12:08:58 Adding debian:Network_Solutions_Certificate_Authority.pem build 03-Oct-2018 12:08:58 Adding debian:UTN_USERFirst_Hardware_Root_CA.pem build 03-Oct-2018 12:08:58 Adding debian:ePKI_Root_Certification_Authority.pem build 03-Oct-2018 12:08:58 Adding debian:Swisscom_Root_EV_CA_2.pem build 03-Oct-2018 12:08:58 Adding debian:USERTrust_ECC_Certification_Authority.pem build 03-Oct-2018 12:08:58 Adding debian:thawte_Primary_Root_CA_-_G2.pem build 03-Oct-2018 12:08:58 Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem build 03-Oct-2018 12:08:58 Adding debian:QuoVadis_Root_CA_2_G3.pem build 03-Oct-2018 12:08:58 Adding debian:SecureSign_RootCA11.pem build 03-Oct-2018 12:08:58 Adding debian:certSIGN_ROOT_CA.pem build 03-Oct-2018 12:08:58 Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem build 03-Oct-2018 12:08:58 Adding debian:Taiwan_GRCA.pem build 03-Oct-2018 12:08:58 Adding debian:Secure_Global_CA.pem build 03-Oct-2018 12:08:58 Adding debian:Buypass_Class_3_Root_CA.pem build 03-Oct-2018 12:08:58 Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem build 03-Oct-2018 12:08:58 Adding debian:GeoTrust_Primary_Certification_Authority.pem build 03-Oct-2018 12:08:58 Adding debian:TÜRKTRUST_Elektronik_Sertifika_Hizmet_Sağlayıcısı_H5.pem build 03-Oct-2018 12:08:58 Adding debian:Security_Communication_Root_CA.pem build 03-Oct-2018 12:08:58 Adding debian:DigiCert_Global_Root_G3.pem build 03-Oct-2018 12:08:58 Adding debian:Certum_Trusted_Network_CA_2.pem build 03-Oct-2018 12:08:58 Adding debian:Amazon_Root_CA_4.pem build 03-Oct-2018 12:08:58 Adding debian:OpenTrust_Root_CA_G3.pem build 03-Oct-2018 12:08:58 Adding debian:Amazon_Root_CA_1.pem build 03-Oct-2018 12:08:58 Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem build 03-Oct-2018 12:08:58 Adding debian:ISRG_Root_X1.pem build 03-Oct-2018 12:08:58 Adding debian:OpenTrust_Root_CA_G2.pem build 03-Oct-2018 12:08:58 Adding debian:LuxTrust_Global_Root_2.pem build 03-Oct-2018 12:08:58 Adding debian:Amazon_Root_CA_2.pem build 03-Oct-2018 12:08:58 Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem build 03-Oct-2018 12:08:58 Adding debian:Amazon_Root_CA_3.pem build 03-Oct-2018 12:08:58 Adding debian:Certplus_Root_CA_G1.pem build 03-Oct-2018 12:08:58 Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem build 03-Oct-2018 12:08:58 Adding debian:SZAFIR_ROOT_CA2.pem build 03-Oct-2018 12:08:58 Adding debian:Certplus_Root_CA_G2.pem build 03-Oct-2018 12:08:58 Adding debian:AC_RAIZ_FNMT-RCM.pem build 03-Oct-2018 12:08:58 Adding debian:OpenTrust_Root_CA_G1.pem build 03-Oct-2018 12:08:58 done. build 03-Oct-2018 12:08:58 Setting up openjdk-8-jre-headless:amd64 (8u181-b13-0ubuntu0.16.04.1) ... build 03-Oct-2018 12:08:59 update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode build 03-Oct-2018 12:08:59 update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/java to provide /usr/bin/java (java) in auto mode build 03-Oct-2018 12:08:59 update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode build 03-Oct-2018 12:08:59 update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode build 03-Oct-2018 12:08:59 update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode build 03-Oct-2018 12:08:59 update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode build 03-Oct-2018 12:08:59 update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode build 03-Oct-2018 12:08:59 update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode build 03-Oct-2018 12:08:59 update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode build 03-Oct-2018 12:08:59 update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode build 03-Oct-2018 12:08:59 update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode build 03-Oct-2018 12:08:59 Setting up default-jre-headless (2:1.8-56ubuntu2) ... build 03-Oct-2018 12:09:00 Setting up openjdk-8-jre:amd64 (8u181-b13-0ubuntu0.16.04.1) ... build 03-Oct-2018 12:09:00 update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode build 03-Oct-2018 12:09:01 Setting up default-jre (2:1.8-56ubuntu2) ... build 03-Oct-2018 12:09:03 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 03-Oct-2018 12:09:03 Processing triggers for ca-certificates (20170717~16.04.1) ... build 03-Oct-2018 12:09:04 Updating certificates in /etc/ssl/certs... build 03-Oct-2018 12:09:04 0 added, 0 removed; done. build 03-Oct-2018 12:09:04 Running hooks in /etc/ca-certificates/update.d... build 03-Oct-2018 12:09:04 build 03-Oct-2018 12:09:04 done. build 03-Oct-2018 12:09:04 done. build 03-Oct-2018 12:09:05 Java interpreter : /usr/lib/jvm/default-java/jre/bin/java build 03-Oct-2018 12:09:05 Java version : 1.8.0_181 build 03-Oct-2018 12:09:05 Java home path : /usr/lib/jvm/default-java build 03-Oct-2018 12:09:05 Java compiler : not present build 03-Oct-2018 12:09:05 Java headers gen.: build 03-Oct-2018 12:09:05 Java archive tool: build 03-Oct-2018 12:09:05 build 03-Oct-2018 12:09:05 trying to compile and link a JNI program build 03-Oct-2018 12:09:05 detected JNI cpp flags : build 03-Oct-2018 12:09:05 detected JNI linker flags : -L$(JAVA_HOME)/jre/lib/amd64/server -ljvm build 03-Oct-2018 12:09:05 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c conftest.c -o conftest.o build 03-Oct-2018 12:09:05 conftest.c:1:17: fatal error: jni.h: No such file or directory build 03-Oct-2018 12:09:05 compilation terminated. build 03-Oct-2018 12:09:05 /usr/lib/R/etc/Makeconf:134: recipe for target 'conftest.o' failed build 03-Oct-2018 12:09:05 make: *** [conftest.o] Error 1 build 03-Oct-2018 12:09:05 Unable to compile a JNI program build 03-Oct-2018 12:09:05 build 03-Oct-2018 12:09:05 build 03-Oct-2018 12:09:05 JAVA_HOME : /usr/lib/jvm/default-java build 03-Oct-2018 12:09:05 Java library path: build 03-Oct-2018 12:09:05 JNI cpp flags : build 03-Oct-2018 12:09:05 JNI linker flags : build 03-Oct-2018 12:09:05 Updating Java configuration in /usr/lib/R build 03-Oct-2018 12:09:05 Done. build 03-Oct-2018 12:09:05 build 03-Oct-2018 12:09:07 Removing intermediate container 7eddae435c7e build 03-Oct-2018 12:09:07 ---> 3356dda97541 build 03-Oct-2018 12:09:07 Step 8/15 : RUN echo 'install.packages(c("leaflet","ggplot2","sp","gstat","RColorBrewer","rgl","dplyr","ggmap","lubridate","dismo","rglwidget","shiny","reshape2","dygraphs","pracma", "fields", "spdep"), repos="http://cran.us.r-project.org", dependencies=TRUE)' > /tmp/packages.R && Rscript /tmp/packages.R build 03-Oct-2018 12:09:07 ---> Running in 4f27fbf39bdd build 03-Oct-2018 12:09:08 Installing packages into '/usr/local/lib/R/site-library' build 03-Oct-2018 12:09:08 (as 'lib' is unspecified) build 03-Oct-2018 12:09:10 Warning: dependencies 'sf', 'rgdal', 'rgeos' are not available build 03-Oct-2018 12:09:10 also installing the dependencies 'bitops', 'openssl', 'checkmate', 'whisker', 'git2r', 'fontBitstreamVera', 'fontLiberation', 'prettyunits', 'gtools', 'gdata', 'caTools', 'gridExtra', 'praise', 'rex', 'httr', 'survival', 'Formula', 'latticeExtra', 'acepack', 'data.table', 'htmlTable', 'mvtnorm', 'TH.data', 'sandwich', 'devtools', 'fontquiver', 'gdtools', 'xml2', 'SparseM', 'MatrixModels', 'intervals', 'bindr', 'bit', 'blob', 'memoise', 'gplots', 'dotCall64', 'png', 'raster', 'viridis', 'maps', 'testit', 'RJSONIO', 'purrr', 'testthat', 'covr', 'ggplot2movies', 'hexbin', 'Hmisc', 'mapproj', 'maptools', 'multcomp', 'vdiffr', 'quantreg', 'svglite', 'zoo', 'spacetime', 'FNN', 'mapdata', 'xts', 'bindrcpp', 'pkgconfig', 'tidyselect', 'plogr', 'bit64', 'DBI', 'dbplyr', 'dtplyr', 'hms', 'Lahman', 'mgcv', 'microbenchmark', 'nycflights13', 'RMySQL', 'RPostgreSQL', 'RSQLite', 'proto', 'RgoogleMaps', 'rjson', 'jpeg', 'geosphere', 'rJava', 'XML', 'ROCR', 'randomForest', 'kernlab', 'gbm', 'Cairo', 'quadprog', 'spam' build 03-Oct-2018 12:09:10 build 03-Oct-2018 12:09:10 trying URL 'http://cran.us.r-project.org/src/contrib/bitops_1.0-6.tar.gz' build 03-Oct-2018 12:09:10 Content type 'application/x-gzip' length 8734 bytes build 03-Oct-2018 12:09:10 ================================================== build 03-Oct-2018 12:09:10 downloaded 8734 bytes build 03-Oct-2018 12:09:10 build 03-Oct-2018 12:09:10 trying URL 'http://cran.us.r-project.org/src/contrib/openssl_1.0.2.tar.gz' build 03-Oct-2018 12:09:10 Content type 'application/x-gzip' length 1194883 bytes (1.1 MB) build 03-Oct-2018 12:09:11 ================================================== build 03-Oct-2018 12:09:11 downloaded 1.1 MB build 03-Oct-2018 12:09:11 build 03-Oct-2018 12:09:11 trying URL 'http://cran.us.r-project.org/src/contrib/checkmate_1.8.5.tar.gz' build 03-Oct-2018 12:09:11 Content type 'application/x-gzip' length 182266 bytes (177 KB) build 03-Oct-2018 12:09:11 ================================================== build 03-Oct-2018 12:09:11 downloaded 177 KB build 03-Oct-2018 12:09:11 build 03-Oct-2018 12:09:11 trying URL 'http://cran.us.r-project.org/src/contrib/whisker_0.3-2.tar.gz' build 03-Oct-2018 12:09:11 Content type 'application/x-gzip' length 27707 bytes (27 KB) build 03-Oct-2018 12:09:12 ================================================== build 03-Oct-2018 12:09:12 downloaded 27 KB build 03-Oct-2018 12:09:12 build 03-Oct-2018 12:09:12 trying URL 'http://cran.us.r-project.org/src/contrib/git2r_0.23.0.tar.gz' build 03-Oct-2018 12:09:12 Content type 'application/x-gzip' length 1150314 bytes (1.1 MB) build 03-Oct-2018 12:09:12 ================================================== build 03-Oct-2018 12:09:12 downloaded 1.1 MB build 03-Oct-2018 12:09:12 build 03-Oct-2018 12:09:12 trying URL 'http://cran.us.r-project.org/src/contrib/fontBitstreamVera_0.1.1.tar.gz' build 03-Oct-2018 12:09:13 Content type 'application/x-gzip' length 693959 bytes (677 KB) build 03-Oct-2018 12:09:13 ================================================== build 03-Oct-2018 12:09:13 downloaded 677 KB build 03-Oct-2018 12:09:13 build 03-Oct-2018 12:09:13 trying URL 'http://cran.us.r-project.org/src/contrib/fontLiberation_0.1.0.tar.gz' build 03-Oct-2018 12:09:13 Content type 'application/x-gzip' length 4527421 bytes (4.3 MB) build 03-Oct-2018 12:09:14 ================================================== build 03-Oct-2018 12:09:14 downloaded 4.3 MB build 03-Oct-2018 12:09:14 build 03-Oct-2018 12:09:14 trying URL 'http://cran.us.r-project.org/src/contrib/prettyunits_1.0.2.tar.gz' build 03-Oct-2018 12:09:15 Content type 'application/x-gzip' length 8262 bytes build 03-Oct-2018 12:09:15 ================================================== build 03-Oct-2018 12:09:15 downloaded 8262 bytes build 03-Oct-2018 12:09:15 build 03-Oct-2018 12:09:15 trying URL 'http://cran.us.r-project.org/src/contrib/gtools_3.8.1.tar.gz' build 03-Oct-2018 12:09:15 Content type 'application/x-gzip' length 187516 bytes (183 KB) build 03-Oct-2018 12:09:15 ================================================== build 03-Oct-2018 12:09:15 downloaded 183 KB build 03-Oct-2018 12:09:15 build 03-Oct-2018 12:09:15 trying URL 'http://cran.us.r-project.org/src/contrib/gdata_2.18.0.tar.gz' build 03-Oct-2018 12:09:15 Content type 'application/x-gzip' length 1058430 bytes (1.0 MB) build 03-Oct-2018 12:09:16 ================================================== build 03-Oct-2018 12:09:16 downloaded 1.0 MB build 03-Oct-2018 12:09:16 build 03-Oct-2018 12:09:16 trying URL 'http://cran.us.r-project.org/src/contrib/caTools_1.17.1.1.tar.gz' build 03-Oct-2018 12:09:16 Content type 'application/x-gzip' length 63565 bytes (62 KB) build 03-Oct-2018 12:09:16 ================================================== build 03-Oct-2018 12:09:16 downloaded 62 KB build 03-Oct-2018 12:09:16 build 03-Oct-2018 12:09:16 trying URL 'http://cran.us.r-project.org/src/contrib/gridExtra_2.3.tar.gz' build 03-Oct-2018 12:09:17 Content type 'application/x-gzip' length 1062844 bytes (1.0 MB) build 03-Oct-2018 12:09:17 ================================================== build 03-Oct-2018 12:09:17 downloaded 1.0 MB build 03-Oct-2018 12:09:17 build 03-Oct-2018 12:09:17 trying URL 'http://cran.us.r-project.org/src/contrib/praise_1.0.0.tar.gz' build 03-Oct-2018 12:09:17 Content type 'application/x-gzip' length 6100 bytes build 03-Oct-2018 12:09:17 ================================================== build 03-Oct-2018 12:09:17 downloaded 6100 bytes build 03-Oct-2018 12:09:17 build 03-Oct-2018 12:09:17 trying URL 'http://cran.us.r-project.org/src/contrib/rex_1.1.2.tar.gz' build 03-Oct-2018 12:09:18 Content type 'application/x-gzip' length 89430 bytes (87 KB) build 03-Oct-2018 12:09:18 ================================================== build 03-Oct-2018 12:09:18 downloaded 87 KB build 03-Oct-2018 12:09:18 build 03-Oct-2018 12:09:18 trying URL 'http://cran.us.r-project.org/src/contrib/httr_1.3.1.tar.gz' build 03-Oct-2018 12:09:18 Content type 'application/x-gzip' length 147593 bytes (144 KB) build 03-Oct-2018 12:09:18 ================================================== build 03-Oct-2018 12:09:18 downloaded 144 KB build 03-Oct-2018 12:09:18 build 03-Oct-2018 12:09:18 trying URL 'http://cran.us.r-project.org/src/contrib/survival_2.42-6.tar.gz' build 03-Oct-2018 12:09:19 Content type 'application/x-gzip' length 4138981 bytes (3.9 MB) build 03-Oct-2018 12:09:20 ================================================== build 03-Oct-2018 12:09:20 downloaded 3.9 MB build 03-Oct-2018 12:09:20 build 03-Oct-2018 12:09:20 trying URL 'http://cran.us.r-project.org/src/contrib/Formula_1.2-3.tar.gz' build 03-Oct-2018 12:09:20 Content type 'application/x-gzip' length 151340 bytes (147 KB) build 03-Oct-2018 12:09:20 ================================================== build 03-Oct-2018 12:09:20 downloaded 147 KB build 03-Oct-2018 12:09:20 build 03-Oct-2018 12:09:20 trying URL 'http://cran.us.r-project.org/src/contrib/latticeExtra_0.6-28.tar.gz' build 03-Oct-2018 12:09:20 Content type 'application/x-gzip' length 1294369 bytes (1.2 MB) build 03-Oct-2018 12:09:21 ================================================== build 03-Oct-2018 12:09:21 downloaded 1.2 MB build 03-Oct-2018 12:09:21 build 03-Oct-2018 12:09:21 trying URL 'http://cran.us.r-project.org/src/contrib/acepack_1.4.1.tar.gz' build 03-Oct-2018 12:09:21 Content type 'application/x-gzip' length 34848 bytes (34 KB) build 03-Oct-2018 12:09:21 ================================================== build 03-Oct-2018 12:09:21 downloaded 34 KB build 03-Oct-2018 12:09:21 build 03-Oct-2018 12:09:21 trying URL 'http://cran.us.r-project.org/src/contrib/data.table_1.11.8.tar.gz' build 03-Oct-2018 12:09:21 Content type 'application/x-gzip' length 3262853 bytes (3.1 MB) build 03-Oct-2018 12:09:22 ================================================== build 03-Oct-2018 12:09:22 downloaded 3.1 MB build 03-Oct-2018 12:09:22 build 03-Oct-2018 12:09:22 trying URL 'http://cran.us.r-project.org/src/contrib/htmlTable_1.12.tar.gz' build 03-Oct-2018 12:09:23 Content type 'application/x-gzip' length 170608 bytes (166 KB) build 03-Oct-2018 12:09:23 ================================================== build 03-Oct-2018 12:09:23 downloaded 166 KB build 03-Oct-2018 12:09:23 build 03-Oct-2018 12:09:23 trying URL 'http://cran.us.r-project.org/src/contrib/mvtnorm_1.0-8.tar.gz' build 03-Oct-2018 12:09:23 Content type 'application/x-gzip' length 159539 bytes (155 KB) build 03-Oct-2018 12:09:23 ================================================== build 03-Oct-2018 12:09:23 downloaded 155 KB build 03-Oct-2018 12:09:23 build 03-Oct-2018 12:09:23 trying URL 'http://cran.us.r-project.org/src/contrib/TH.data_1.0-9.tar.gz' build 03-Oct-2018 12:09:23 Content type 'application/x-gzip' length 8215301 bytes (7.8 MB) build 03-Oct-2018 12:09:25 ================================================== build 03-Oct-2018 12:09:25 downloaded 7.8 MB build 03-Oct-2018 12:09:25 build 03-Oct-2018 12:09:25 trying URL 'http://cran.us.r-project.org/src/contrib/sandwich_2.5-0.tar.gz' build 03-Oct-2018 12:09:25 Content type 'application/x-gzip' length 1376950 bytes (1.3 MB) build 03-Oct-2018 12:09:26 ================================================== build 03-Oct-2018 12:09:26 downloaded 1.3 MB build 03-Oct-2018 12:09:26 build 03-Oct-2018 12:09:26 trying URL 'http://cran.us.r-project.org/src/contrib/devtools_1.13.6.tar.gz' build 03-Oct-2018 12:09:26 Content type 'application/x-gzip' length 486446 bytes (475 KB) build 03-Oct-2018 12:09:26 ================================================== build 03-Oct-2018 12:09:26 downloaded 475 KB build 03-Oct-2018 12:09:26 build 03-Oct-2018 12:09:26 trying URL 'http://cran.us.r-project.org/src/contrib/fontquiver_0.2.1.tar.gz' build 03-Oct-2018 12:09:26 Content type 'application/x-gzip' length 2233101 bytes (2.1 MB) build 03-Oct-2018 12:09:27 ================================================== build 03-Oct-2018 12:09:27 downloaded 2.1 MB build 03-Oct-2018 12:09:27 build 03-Oct-2018 12:09:27 trying URL 'http://cran.us.r-project.org/src/contrib/gdtools_0.1.7.tar.gz' build 03-Oct-2018 12:09:27 Content type 'application/x-gzip' length 35268 bytes (34 KB) build 03-Oct-2018 12:09:28 ================================================== build 03-Oct-2018 12:09:28 downloaded 34 KB build 03-Oct-2018 12:09:28 build 03-Oct-2018 12:09:28 trying URL 'http://cran.us.r-project.org/src/contrib/xml2_1.2.0.tar.gz' build 03-Oct-2018 12:09:28 Content type 'application/x-gzip' length 251614 bytes (245 KB) build 03-Oct-2018 12:09:28 ================================================== build 03-Oct-2018 12:09:28 downloaded 245 KB build 03-Oct-2018 12:09:28 build 03-Oct-2018 12:09:28 trying URL 'http://cran.us.r-project.org/src/contrib/SparseM_1.77.tar.gz' build 03-Oct-2018 12:09:28 Content type 'application/x-gzip' length 756317 bytes (738 KB) build 03-Oct-2018 12:09:29 ================================================== build 03-Oct-2018 12:09:29 downloaded 738 KB build 03-Oct-2018 12:09:29 build 03-Oct-2018 12:09:29 trying URL 'http://cran.us.r-project.org/src/contrib/MatrixModels_0.4-1.tar.gz' build 03-Oct-2018 12:09:29 Content type 'application/x-gzip' length 23065 bytes (22 KB) build 03-Oct-2018 12:09:29 ================================================== build 03-Oct-2018 12:09:29 downloaded 22 KB build 03-Oct-2018 12:09:29 build 03-Oct-2018 12:09:29 trying URL 'http://cran.us.r-project.org/src/contrib/intervals_0.15.1.tar.gz' build 03-Oct-2018 12:09:29 Content type 'application/x-gzip' length 393014 bytes (383 KB) build 03-Oct-2018 12:09:30 ================================================== build 03-Oct-2018 12:09:30 downloaded 383 KB build 03-Oct-2018 12:09:30 build 03-Oct-2018 12:09:30 trying URL 'http://cran.us.r-project.org/src/contrib/bindr_0.1.1.tar.gz' build 03-Oct-2018 12:09:30 Content type 'application/x-gzip' length 6185 bytes build 03-Oct-2018 12:09:30 ================================================== build 03-Oct-2018 12:09:30 downloaded 6185 bytes build 03-Oct-2018 12:09:30 build 03-Oct-2018 12:09:30 trying URL 'http://cran.us.r-project.org/src/contrib/bit_1.1-14.tar.gz' build 03-Oct-2018 12:09:30 Content type 'application/x-gzip' length 54779 bytes (53 KB) build 03-Oct-2018 12:09:30 ================================================== build 03-Oct-2018 12:09:30 downloaded 53 KB build 03-Oct-2018 12:09:30 build 03-Oct-2018 12:09:30 trying URL 'http://cran.us.r-project.org/src/contrib/blob_1.1.1.tar.gz' build 03-Oct-2018 12:09:31 Content type 'application/x-gzip' length 4828 bytes build 03-Oct-2018 12:09:31 ================================================== build 03-Oct-2018 12:09:31 downloaded 4828 bytes build 03-Oct-2018 12:09:31 build 03-Oct-2018 12:09:31 trying URL 'http://cran.us.r-project.org/src/contrib/memoise_1.1.0.tar.gz' build 03-Oct-2018 12:09:31 Content type 'application/x-gzip' length 11025 bytes (10 KB) build 03-Oct-2018 12:09:31 ================================================== build 03-Oct-2018 12:09:31 downloaded 10 KB build 03-Oct-2018 12:09:31 build 03-Oct-2018 12:09:31 trying URL 'http://cran.us.r-project.org/src/contrib/gplots_3.0.1.tar.gz' build 03-Oct-2018 12:09:31 Content type 'application/x-gzip' length 578626 bytes (565 KB) build 03-Oct-2018 12:09:32 ================================================== build 03-Oct-2018 12:09:32 downloaded 565 KB build 03-Oct-2018 12:09:32 build 03-Oct-2018 12:09:32 trying URL 'http://cran.us.r-project.org/src/contrib/dotCall64_1.0-0.tar.gz' build 03-Oct-2018 12:09:32 Content type 'application/x-gzip' length 17249 bytes (16 KB) build 03-Oct-2018 12:09:32 ================================================== build 03-Oct-2018 12:09:32 downloaded 16 KB build 03-Oct-2018 12:09:32 build 03-Oct-2018 12:09:32 trying URL 'http://cran.us.r-project.org/src/contrib/png_0.1-7.tar.gz' build 03-Oct-2018 12:09:32 Content type 'application/x-gzip' length 24990 bytes (24 KB) build 03-Oct-2018 12:09:32 ================================================== build 03-Oct-2018 12:09:32 downloaded 24 KB build 03-Oct-2018 12:09:32 build 03-Oct-2018 12:09:32 trying URL 'http://cran.us.r-project.org/src/contrib/raster_2.6-7.tar.gz' build 03-Oct-2018 12:09:32 Content type 'application/x-gzip' length 1080946 bytes (1.0 MB) build 03-Oct-2018 12:09:33 ================================================== build 03-Oct-2018 12:09:33 downloaded 1.0 MB build 03-Oct-2018 12:09:33 build 03-Oct-2018 12:09:33 trying URL 'http://cran.us.r-project.org/src/contrib/viridis_0.5.1.tar.gz' build 03-Oct-2018 12:09:33 Content type 'application/x-gzip' length 1906320 bytes (1.8 MB) build 03-Oct-2018 12:09:34 ================================================== build 03-Oct-2018 12:09:34 downloaded 1.8 MB build 03-Oct-2018 12:09:34 build 03-Oct-2018 12:09:34 trying URL 'http://cran.us.r-project.org/src/contrib/maps_3.3.0.tar.gz' build 03-Oct-2018 12:09:34 Content type 'application/x-gzip' length 2493744 bytes (2.4 MB) build 03-Oct-2018 12:09:35 ================================================== build 03-Oct-2018 12:09:35 downloaded 2.4 MB build 03-Oct-2018 12:09:35 build 03-Oct-2018 12:09:35 trying URL 'http://cran.us.r-project.org/src/contrib/testit_0.8.tar.gz' build 03-Oct-2018 12:09:36 Content type 'application/x-gzip' length 9553 bytes build 03-Oct-2018 12:09:36 ================================================== build 03-Oct-2018 12:09:36 downloaded 9553 bytes build 03-Oct-2018 12:09:36 build 03-Oct-2018 12:09:36 trying URL 'http://cran.us.r-project.org/src/contrib/RJSONIO_1.3-0.tar.gz' build 03-Oct-2018 12:09:36 Content type 'application/x-gzip' length 1148375 bytes (1.1 MB) build 03-Oct-2018 12:09:36 ================================================== build 03-Oct-2018 12:09:36 downloaded 1.1 MB build 03-Oct-2018 12:09:36 build 03-Oct-2018 12:09:36 trying URL 'http://cran.us.r-project.org/src/contrib/purrr_0.2.5.tar.gz' build 03-Oct-2018 12:09:37 Content type 'application/x-gzip' length 126147 bytes (123 KB) build 03-Oct-2018 12:09:37 ================================================== build 03-Oct-2018 12:09:37 downloaded 123 KB build 03-Oct-2018 12:09:37 build 03-Oct-2018 12:09:37 trying URL 'http://cran.us.r-project.org/src/contrib/testthat_2.0.0.tar.gz' build 03-Oct-2018 12:09:37 Content type 'application/x-gzip' length 217190 bytes (212 KB) build 03-Oct-2018 12:09:37 ================================================== build 03-Oct-2018 12:09:37 downloaded 212 KB build 03-Oct-2018 12:09:37 build 03-Oct-2018 12:09:37 trying URL 'http://cran.us.r-project.org/src/contrib/covr_3.2.0.tar.gz' build 03-Oct-2018 12:09:38 Content type 'application/x-gzip' length 139976 bytes (136 KB) build 03-Oct-2018 12:09:38 ================================================== build 03-Oct-2018 12:09:38 downloaded 136 KB build 03-Oct-2018 12:09:38 build 03-Oct-2018 12:09:38 trying URL 'http://cran.us.r-project.org/src/contrib/ggplot2movies_0.0.1.tar.gz' build 03-Oct-2018 12:09:38 Content type 'application/x-gzip' length 907405 bytes (886 KB) build 03-Oct-2018 12:09:39 ================================================== build 03-Oct-2018 12:09:39 downloaded 886 KB build 03-Oct-2018 12:09:39 build 03-Oct-2018 12:09:39 trying URL 'http://cran.us.r-project.org/src/contrib/hexbin_1.27.2.tar.gz' build 03-Oct-2018 12:09:39 Content type 'application/x-gzip' length 491560 bytes (480 KB) build 03-Oct-2018 12:09:39 ================================================== build 03-Oct-2018 12:09:39 downloaded 480 KB build 03-Oct-2018 12:09:39 build 03-Oct-2018 12:09:39 trying URL 'http://cran.us.r-project.org/src/contrib/Hmisc_4.1-1.tar.gz' build 03-Oct-2018 12:09:40 Content type 'application/x-gzip' length 711786 bytes (695 KB) build 03-Oct-2018 12:09:40 ================================================== build 03-Oct-2018 12:09:40 downloaded 695 KB build 03-Oct-2018 12:09:40 build 03-Oct-2018 12:09:40 trying URL 'http://cran.us.r-project.org/src/contrib/mapproj_1.2.6.tar.gz' build 03-Oct-2018 12:09:40 Content type 'application/x-gzip' length 25700 bytes (25 KB) build 03-Oct-2018 12:09:40 ================================================== build 03-Oct-2018 12:09:40 downloaded 25 KB build 03-Oct-2018 12:09:40 build 03-Oct-2018 12:09:40 trying URL 'http://cran.us.r-project.org/src/contrib/maptools_0.9-4.tar.gz' build 03-Oct-2018 12:09:41 Content type 'application/x-gzip' length 1580721 bytes (1.5 MB) build 03-Oct-2018 12:09:41 ================================================== build 03-Oct-2018 12:09:41 downloaded 1.5 MB build 03-Oct-2018 12:09:41 build 03-Oct-2018 12:09:41 trying URL 'http://cran.us.r-project.org/src/contrib/multcomp_1.4-8.tar.gz' build 03-Oct-2018 12:09:42 Content type 'application/x-gzip' length 607674 bytes (593 KB) build 03-Oct-2018 12:09:42 ================================================== build 03-Oct-2018 12:09:42 downloaded 593 KB build 03-Oct-2018 12:09:42 build 03-Oct-2018 12:09:42 trying URL 'http://cran.us.r-project.org/src/contrib/vdiffr_0.2.3.tar.gz' build 03-Oct-2018 12:09:42 Content type 'application/x-gzip' length 77057 bytes (75 KB) build 03-Oct-2018 12:09:43 ================================================== build 03-Oct-2018 12:09:43 downloaded 75 KB build 03-Oct-2018 12:09:43 build 03-Oct-2018 12:09:43 trying URL 'http://cran.us.r-project.org/src/contrib/quantreg_5.36.tar.gz' build 03-Oct-2018 12:09:43 Content type 'application/x-gzip' length 1640340 bytes (1.6 MB) build 03-Oct-2018 12:09:43 ================================================== build 03-Oct-2018 12:09:43 downloaded 1.6 MB build 03-Oct-2018 12:09:43 build 03-Oct-2018 12:09:43 trying URL 'http://cran.us.r-project.org/src/contrib/svglite_1.2.1.tar.gz' build 03-Oct-2018 12:09:44 Content type 'application/x-gzip' length 41315 bytes (40 KB) build 03-Oct-2018 12:09:44 ================================================== build 03-Oct-2018 12:09:44 downloaded 40 KB build 03-Oct-2018 12:09:44 build 03-Oct-2018 12:09:44 trying URL 'http://cran.us.r-project.org/src/contrib/zoo_1.8-4.tar.gz' build 03-Oct-2018 12:09:44 Content type 'application/x-gzip' length 856279 bytes (836 KB) build 03-Oct-2018 12:09:45 ================================================== build 03-Oct-2018 12:09:45 downloaded 836 KB build 03-Oct-2018 12:09:45 build 03-Oct-2018 12:09:45 trying URL 'http://cran.us.r-project.org/src/contrib/spacetime_1.2-2.tar.gz' build 03-Oct-2018 12:09:45 Content type 'application/x-gzip' length 3001357 bytes (2.9 MB) build 03-Oct-2018 12:09:46 ================================================== build 03-Oct-2018 12:09:46 downloaded 2.9 MB build 03-Oct-2018 12:09:46 build 03-Oct-2018 12:09:46 trying URL 'http://cran.us.r-project.org/src/contrib/FNN_1.1.2.1.tar.gz' build 03-Oct-2018 12:09:46 Content type 'application/x-gzip' length 78525 bytes (76 KB) build 03-Oct-2018 12:09:46 ================================================== build 03-Oct-2018 12:09:46 downloaded 76 KB build 03-Oct-2018 12:09:46 build 03-Oct-2018 12:09:46 trying URL 'http://cran.us.r-project.org/src/contrib/mapdata_2.3.0.tar.gz' build 03-Oct-2018 12:09:46 Content type 'application/x-gzip' length 13619287 bytes (13.0 MB) build 03-Oct-2018 12:09:48 ================================================== build 03-Oct-2018 12:09:48 downloaded 13.0 MB build 03-Oct-2018 12:09:48 build 03-Oct-2018 12:09:48 trying URL 'http://cran.us.r-project.org/src/contrib/xts_0.11-1.tar.gz' build 03-Oct-2018 12:09:48 Content type 'application/x-gzip' length 535201 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'application/x-gzip' length 21702 bytes (21 KB) build 03-Oct-2018 12:09:49 ================================================== build 03-Oct-2018 12:09:49 downloaded 21 KB build 03-Oct-2018 12:09:49 build 03-Oct-2018 12:09:49 trying URL 'http://cran.us.r-project.org/src/contrib/plogr_0.2.0.tar.gz' build 03-Oct-2018 12:09:49 Content type 'application/x-gzip' length 7795 bytes build 03-Oct-2018 12:09:49 ================================================== build 03-Oct-2018 12:09:49 downloaded 7795 bytes build 03-Oct-2018 12:09:49 build 03-Oct-2018 12:09:49 trying URL 'http://cran.us.r-project.org/src/contrib/bit64_0.9-7.tar.gz' build 03-Oct-2018 12:09:50 Content type 'application/x-gzip' length 125539 bytes (122 KB) build 03-Oct-2018 12:09:50 ================================================== build 03-Oct-2018 12:09:50 downloaded 122 KB build 03-Oct-2018 12:09:50 build 03-Oct-2018 12:09:50 trying URL 'http://cran.us.r-project.org/src/contrib/DBI_1.0.0.tar.gz' build 03-Oct-2018 12:09:50 Content type 'application/x-gzip' length 931812 bytes (909 KB) build 03-Oct-2018 12:09:51 ================================================== build 03-Oct-2018 12:09:51 downloaded 909 KB build 03-Oct-2018 12:09:51 build 03-Oct-2018 12:09:51 trying URL 'http://cran.us.r-project.org/src/contrib/dbplyr_1.2.2.tar.gz' build 03-Oct-2018 12:09:51 Content type 'application/x-gzip' length 263687 bytes (257 KB) build 03-Oct-2018 12:09:51 ================================================== build 03-Oct-2018 12:09:51 downloaded 257 KB build 03-Oct-2018 12:09:51 build 03-Oct-2018 12:09:51 trying URL 'http://cran.us.r-project.org/src/contrib/dtplyr_0.0.2.tar.gz' build 03-Oct-2018 12:09:51 Content type 'application/x-gzip' length 12682 bytes (12 KB) build 03-Oct-2018 12:09:51 ================================================== build 03-Oct-2018 12:09:51 downloaded 12 KB build 03-Oct-2018 12:09:51 build 03-Oct-2018 12:09:51 trying URL 'http://cran.us.r-project.org/src/contrib/hms_0.4.2.tar.gz' build 03-Oct-2018 12:09:52 Content type 'application/x-gzip' length 12773 bytes (12 KB) build 03-Oct-2018 12:09:52 ================================================== build 03-Oct-2018 12:09:52 downloaded 12 KB build 03-Oct-2018 12:09:52 build 03-Oct-2018 12:09:52 trying URL 'http://cran.us.r-project.org/src/contrib/Lahman_6.0-0.tar.gz' build 03-Oct-2018 12:09:52 Content type 'application/x-gzip' length 5585229 bytes (5.3 MB) build 03-Oct-2018 12:09:53 ================================================== build 03-Oct-2018 12:09:53 downloaded 5.3 MB build 03-Oct-2018 12:09:53 build 03-Oct-2018 12:09:53 trying URL 'http://cran.us.r-project.org/src/contrib/mgcv_1.8-24.tar.gz' build 03-Oct-2018 12:09:53 Content type 'application/x-gzip' length 876098 bytes (855 KB) build 03-Oct-2018 12:09:54 ================================================== build 03-Oct-2018 12:09:54 downloaded 855 KB build 03-Oct-2018 12:09:54 build 03-Oct-2018 12:09:54 trying URL 'http://cran.us.r-project.org/src/contrib/microbenchmark_1.4-4.tar.gz' build 03-Oct-2018 12:09:54 Content type 'application/x-gzip' length 57198 bytes (55 KB) build 03-Oct-2018 12:09:54 ================================================== build 03-Oct-2018 12:09:54 downloaded 55 KB build 03-Oct-2018 12:09:54 build 03-Oct-2018 12:09:54 trying URL 'http://cran.us.r-project.org/src/contrib/nycflights13_1.0.0.tar.gz' build 03-Oct-2018 12:09:54 Content type 'application/x-gzip' length 4518656 bytes (4.3 MB) build 03-Oct-2018 12:09:55 ================================================== build 03-Oct-2018 12:09:55 downloaded 4.3 MB build 03-Oct-2018 12:09:55 build 03-Oct-2018 12:09:55 trying URL 'http://cran.us.r-project.org/src/contrib/RMySQL_0.10.15.tar.gz' build 03-Oct-2018 12:09:56 Content type 'application/x-gzip' length 52728 bytes (51 KB) build 03-Oct-2018 12:09:56 ================================================== build 03-Oct-2018 12:09:56 downloaded 51 KB build 03-Oct-2018 12:09:56 build 03-Oct-2018 12:09:56 trying URL 'http://cran.us.r-project.org/src/contrib/RPostgreSQL_0.6-2.tar.gz' build 03-Oct-2018 12:09:56 Content type 'application/x-gzip' length 579968 bytes (566 KB) build 03-Oct-2018 12:09:57 ================================================== build 03-Oct-2018 12:09:57 downloaded 566 KB build 03-Oct-2018 12:09:57 build 03-Oct-2018 12:09:57 trying URL 'http://cran.us.r-project.org/src/contrib/RSQLite_2.1.1.tar.gz' build 03-Oct-2018 12:09:57 Content type 'application/x-gzip' length 2192835 bytes (2.1 MB) build 03-Oct-2018 12:09:58 ================================================== build 03-Oct-2018 12:09:58 downloaded 2.1 MB build 03-Oct-2018 12:09:58 build 03-Oct-2018 12:09:58 trying URL 'http://cran.us.r-project.org/src/contrib/proto_1.0.0.tar.gz' build 03-Oct-2018 12:09:58 Content type 'application/x-gzip' length 541398 bytes (528 KB) build 03-Oct-2018 12:09:58 ================================================== build 03-Oct-2018 12:09:58 downloaded 528 KB build 03-Oct-2018 12:09:58 build 03-Oct-2018 12:09:58 trying URL 'http://cran.us.r-project.org/src/contrib/RgoogleMaps_1.4.2.tar.gz' build 03-Oct-2018 12:09:59 Content type 'application/x-gzip' length 794533 bytes (775 KB) build 03-Oct-2018 12:09:59 ================================================== build 03-Oct-2018 12:09:59 downloaded 775 KB build 03-Oct-2018 12:09:59 build 03-Oct-2018 12:09:59 trying URL 'http://cran.us.r-project.org/src/contrib/rjson_0.2.20.tar.gz' build 03-Oct-2018 12:09:59 Content type 'application/x-gzip' length 99600 bytes (97 KB) build 03-Oct-2018 12:10:00 ================================================== build 03-Oct-2018 12:10:00 downloaded 97 KB build 03-Oct-2018 12:10:00 build 03-Oct-2018 12:10:00 trying URL 'http://cran.us.r-project.org/src/contrib/jpeg_0.1-8.tar.gz' build 03-Oct-2018 12:10:00 Content type 'application/x-gzip' length 18046 bytes (17 KB) build 03-Oct-2018 12:10:00 ================================================== build 03-Oct-2018 12:10:00 downloaded 17 KB build 03-Oct-2018 12:10:00 build 03-Oct-2018 12:10:00 trying URL 'http://cran.us.r-project.org/src/contrib/geosphere_1.5-7.tar.gz' build 03-Oct-2018 12:10:00 Content type 'application/x-gzip' length 758133 bytes (740 KB) build 03-Oct-2018 12:10:01 ================================================== build 03-Oct-2018 12:10:01 downloaded 740 KB build 03-Oct-2018 12:10:01 build 03-Oct-2018 12:10:01 trying URL 'http://cran.us.r-project.org/src/contrib/rJava_0.9-10.tar.gz' build 03-Oct-2018 12:10:01 Content type 'application/x-gzip' length 672577 bytes (656 KB) build 03-Oct-2018 12:10:01 ================================================== build 03-Oct-2018 12:10:01 downloaded 656 KB build 03-Oct-2018 12:10:01 build 03-Oct-2018 12:10:01 trying URL 'http://cran.us.r-project.org/src/contrib/XML_3.98-1.16.tar.gz' build 03-Oct-2018 12:10:02 Content type 'application/x-gzip' length 1599292 bytes (1.5 MB) build 03-Oct-2018 12:10:02 ================================================== build 03-Oct-2018 12:10:02 downloaded 1.5 MB build 03-Oct-2018 12:10:02 build 03-Oct-2018 12:10:02 trying URL 'http://cran.us.r-project.org/src/contrib/ROCR_1.0-7.tar.gz' build 03-Oct-2018 12:10:03 Content type 'application/x-gzip' length 107872 bytes (105 KB) build 03-Oct-2018 12:10:03 ================================================== build 03-Oct-2018 12:10:03 downloaded 105 KB build 03-Oct-2018 12:10:03 build 03-Oct-2018 12:10:03 trying URL 'http://cran.us.r-project.org/src/contrib/randomForest_4.6-14.tar.gz' build 03-Oct-2018 12:10:03 Content type 'application/x-gzip' length 80074 bytes (78 KB) build 03-Oct-2018 12:10:03 ================================================== build 03-Oct-2018 12:10:03 downloaded 78 KB build 03-Oct-2018 12:10:03 build 03-Oct-2018 12:10:03 trying URL 'http://cran.us.r-project.org/src/contrib/kernlab_0.9-27.tar.gz' build 03-Oct-2018 12:10:03 Content type 'application/x-gzip' length 1197907 bytes (1.1 MB) build 03-Oct-2018 12:10:04 ================================================== build 03-Oct-2018 12:10:04 downloaded 1.1 MB build 03-Oct-2018 12:10:04 build 03-Oct-2018 12:10:04 trying URL 'http://cran.us.r-project.org/src/contrib/gbm_2.1.4.tar.gz' build 03-Oct-2018 12:10:04 Content type 'application/x-gzip' length 442419 bytes (432 KB) build 03-Oct-2018 12:10:05 ================================================== build 03-Oct-2018 12:10:05 downloaded 432 KB build 03-Oct-2018 12:10:05 build 03-Oct-2018 12:10:05 trying URL 'http://cran.us.r-project.org/src/contrib/Cairo_1.5-9.tar.gz' build 03-Oct-2018 12:10:05 Content type 'application/x-gzip' length 86982 bytes (84 KB) build 03-Oct-2018 12:10:05 ================================================== build 03-Oct-2018 12:10:05 downloaded 84 KB build 03-Oct-2018 12:10:05 build 03-Oct-2018 12:10:05 trying URL 'http://cran.us.r-project.org/src/contrib/quadprog_1.5-5.tar.gz' build 03-Oct-2018 12:10:06 Content type 'application/x-gzip' length 33651 bytes (32 KB) build 03-Oct-2018 12:10:06 ================================================== build 03-Oct-2018 12:10:06 downloaded 32 KB build 03-Oct-2018 12:10:06 build 03-Oct-2018 12:10:06 trying URL 'http://cran.us.r-project.org/src/contrib/spam_2.2-0.tar.gz' build 03-Oct-2018 12:10:06 Content type 'application/x-gzip' length 1414499 bytes (1.3 MB) build 03-Oct-2018 12:10:07 ================================================== build 03-Oct-2018 12:10:07 downloaded 1.3 MB build 03-Oct-2018 12:10:07 build 03-Oct-2018 12:10:07 trying URL 'http://cran.us.r-project.org/src/contrib/leaflet_2.0.2.tar.gz' build 03-Oct-2018 12:10:07 Content type 'application/x-gzip' length 2059752 bytes (2.0 MB) build 03-Oct-2018 12:10:08 ================================================== build 03-Oct-2018 12:10:08 downloaded 2.0 MB build 03-Oct-2018 12:10:08 build 03-Oct-2018 12:10:08 trying URL 'http://cran.us.r-project.org/src/contrib/ggplot2_3.0.0.tar.gz' build 03-Oct-2018 12:10:08 Content type 'application/x-gzip' length 2847050 bytes (2.7 MB) build 03-Oct-2018 12:10:09 ================================================== build 03-Oct-2018 12:10:09 downloaded 2.7 MB build 03-Oct-2018 12:10:09 build 03-Oct-2018 12:10:09 trying URL 'http://cran.us.r-project.org/src/contrib/sp_1.3-1.tar.gz' build 03-Oct-2018 12:10:09 Content type 'application/x-gzip' length 1133621 bytes (1.1 MB) build 03-Oct-2018 12:10:10 ================================================== build 03-Oct-2018 12:10:10 downloaded 1.1 MB build 03-Oct-2018 12:10:10 build 03-Oct-2018 12:10:10 trying URL 'http://cran.us.r-project.org/src/contrib/gstat_1.1-6.tar.gz' build 03-Oct-2018 12:10:10 Content type 'application/x-gzip' length 2278109 bytes (2.2 MB) build 03-Oct-2018 12:10:11 ================================================== build 03-Oct-2018 12:10:11 downloaded 2.2 MB build 03-Oct-2018 12:10:11 build 03-Oct-2018 12:10:11 trying URL 'http://cran.us.r-project.org/src/contrib/RColorBrewer_1.1-2.tar.gz' build 03-Oct-2018 12:10:11 Content type 'application/x-gzip' length 11532 bytes (11 KB) build 03-Oct-2018 12:10:11 ================================================== build 03-Oct-2018 12:10:11 downloaded 11 KB build 03-Oct-2018 12:10:11 build 03-Oct-2018 12:10:11 trying URL 'http://cran.us.r-project.org/src/contrib/rgl_0.99.16.tar.gz' build 03-Oct-2018 12:10:11 Content type 'application/x-gzip' length 3058794 bytes (2.9 MB) build 03-Oct-2018 12:10:13 ================================================== build 03-Oct-2018 12:10:13 downloaded 2.9 MB build 03-Oct-2018 12:10:13 build 03-Oct-2018 12:10:13 trying URL 'http://cran.us.r-project.org/src/contrib/dplyr_0.7.6.tar.gz' build 03-Oct-2018 12:10:13 Content type 'application/x-gzip' length 710339 bytes (693 KB) build 03-Oct-2018 12:10:13 ================================================== build 03-Oct-2018 12:10:13 downloaded 693 KB build 03-Oct-2018 12:10:13 build 03-Oct-2018 12:10:13 trying URL 'http://cran.us.r-project.org/src/contrib/ggmap_2.6.1.tar.gz' build 03-Oct-2018 12:10:14 Content type 'application/x-gzip' length 2951545 bytes (2.8 MB) build 03-Oct-2018 12:10:15 ================================================== build 03-Oct-2018 12:10:15 downloaded 2.8 MB build 03-Oct-2018 12:10:15 build 03-Oct-2018 12:10:15 trying URL 'http://cran.us.r-project.org/src/contrib/lubridate_1.7.4.tar.gz' build 03-Oct-2018 12:10:15 Content type 'application/x-gzip' length 449850 bytes (439 KB) build 03-Oct-2018 12:10:15 ================================================== build 03-Oct-2018 12:10:15 downloaded 439 KB build 03-Oct-2018 12:10:15 build 03-Oct-2018 12:10:15 trying URL 'http://cran.us.r-project.org/src/contrib/dismo_1.1-4.tar.gz' build 03-Oct-2018 12:10:16 Content type 'application/x-gzip' length 1496835 bytes (1.4 MB) build 03-Oct-2018 12:10:16 ================================================== build 03-Oct-2018 12:10:16 downloaded 1.4 MB build 03-Oct-2018 12:10:16 build 03-Oct-2018 12:10:16 trying URL 'http://cran.us.r-project.org/src/contrib/rglwidget_0.2.1.tar.gz' build 03-Oct-2018 12:10:16 Content type 'application/x-gzip' length 5503 bytes build 03-Oct-2018 12:10:16 ================================================== build 03-Oct-2018 12:10:16 downloaded 5503 bytes build 03-Oct-2018 12:10:16 build 03-Oct-2018 12:10:16 trying URL 'http://cran.us.r-project.org/src/contrib/shiny_1.1.0.tar.gz' build 03-Oct-2018 12:10:17 Content type 'application/x-gzip' length 2350156 bytes (2.2 MB) build 03-Oct-2018 12:10:18 ================================================== build 03-Oct-2018 12:10:18 downloaded 2.2 MB build 03-Oct-2018 12:10:18 build 03-Oct-2018 12:10:18 trying URL 'http://cran.us.r-project.org/src/contrib/reshape2_1.4.3.tar.gz' build 03-Oct-2018 12:10:18 Content type 'application/x-gzip' length 36405 bytes (35 KB) build 03-Oct-2018 12:10:18 ================================================== build 03-Oct-2018 12:10:18 downloaded 35 KB build 03-Oct-2018 12:10:18 build 03-Oct-2018 12:10:18 trying URL 'http://cran.us.r-project.org/src/contrib/dygraphs_1.1.1.6.tar.gz' build 03-Oct-2018 12:10:18 Content type 'application/x-gzip' length 318939 bytes (311 KB) build 03-Oct-2018 12:10:18 ================================================== build 03-Oct-2018 12:10:18 downloaded 311 KB build 03-Oct-2018 12:10:18 build 03-Oct-2018 12:10:18 trying URL 'http://cran.us.r-project.org/src/contrib/pracma_2.1.5.tar.gz' build 03-Oct-2018 12:10:19 Content type 'application/x-gzip' length 381729 bytes (372 KB) build 03-Oct-2018 12:10:19 ================================================== build 03-Oct-2018 12:10:19 downloaded 372 KB build 03-Oct-2018 12:10:19 build 03-Oct-2018 12:10:19 trying URL 'http://cran.us.r-project.org/src/contrib/fields_9.6.tar.gz' build 03-Oct-2018 12:10:19 Content type 'application/x-gzip' length 3265215 bytes (3.1 MB) build 03-Oct-2018 12:10:20 ================================================== build 03-Oct-2018 12:10:20 downloaded 3.1 MB build 03-Oct-2018 12:10:20 build 03-Oct-2018 12:10:21 * installing *source* package 'bitops' ... build 03-Oct-2018 12:10:21 ** package 'bitops' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:10:21 ** libs build 03-Oct-2018 12:10:21 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bit-ops.c -o bit-ops.o build 03-Oct-2018 12:10:21 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cksum.c -o cksum.o build 03-Oct-2018 12:10:21 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o bitops.so bit-ops.o cksum.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:10:21 installing to /usr/local/lib/R/site-library/bitops/libs build 03-Oct-2018 12:10:21 ** R build 03-Oct-2018 12:10:21 ** preparing package for lazy loading build 03-Oct-2018 12:10:21 ** help build 03-Oct-2018 12:10:21 *** installing help indices build 03-Oct-2018 12:10:21 ** building package indices build 03-Oct-2018 12:10:21 ** testing if installed package can be loaded build 03-Oct-2018 12:10:21 * DONE (bitops) build 03-Oct-2018 12:10:21 * installing *source* package 'openssl' ... build 03-Oct-2018 12:10:22 ** package 'openssl' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:10:22 Found pkg-config cflags and libs! build 03-Oct-2018 12:10:22 Using PKG_CFLAGS= build 03-Oct-2018 12:10:22 Using PKG_LIBS=-l:libssl.so.1.0.0 -l:libcrypto.so.1.0.0 build 03-Oct-2018 12:10:22 ** libs build 03-Oct-2018 12:10:22 rm -f aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o openssl.so build 03-Oct-2018 12:10:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c aes.c -o aes.o build 03-Oct-2018 12:10:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base64.c -o base64.o build 03-Oct-2018 12:10:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bignum.c -o bignum.o build 03-Oct-2018 12:10:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cert.c -o cert.o build 03-Oct-2018 12:10:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c compatibility.c -o compatibility.o build 03-Oct-2018 12:10:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c diffie.c -o diffie.o build 03-Oct-2018 12:10:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c envelope.c -o envelope.o build 03-Oct-2018 12:10:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c error.c -o error.o build 03-Oct-2018 12:10:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hash.c -o hash.o build 03-Oct-2018 12:10:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c info.c -o info.o build 03-Oct-2018 12:10:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c keygen.c -o keygen.o build 03-Oct-2018 12:10:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c keys.c -o keys.o build 03-Oct-2018 12:10:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c onload.c -o onload.o build 03-Oct-2018 12:10:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c openssh.c -o openssh.o build 03-Oct-2018 12:10:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c password.c -o password.o build 03-Oct-2018 12:10:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pem.c -o pem.o build 03-Oct-2018 12:10:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pkcs12.c -o pkcs12.o build 03-Oct-2018 12:10:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pkcs7.c -o pkcs7.o build 03-Oct-2018 12:10:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rand.c -o rand.o build 03-Oct-2018 12:10:24 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rsa.c -o rsa.o build 03-Oct-2018 12:10:24 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c signing.c -o signing.o build 03-Oct-2018 12:10:24 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ssl.c -o ssl.o build 03-Oct-2018 12:10:24 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stream.c -o stream.o build 03-Oct-2018 12:10:24 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c write.c -o write.o build 03-Oct-2018 12:10:24 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o openssl.so aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o -l:libssl.so.1.0.0 -l:libcrypto.so.1.0.0 -L/usr/lib/R/lib -lR build 03-Oct-2018 12:10:24 installing to /usr/local/lib/R/site-library/openssl/libs build 03-Oct-2018 12:10:24 ** R build 03-Oct-2018 12:10:24 ** inst build 03-Oct-2018 12:10:24 ** preparing package for lazy loading build 03-Oct-2018 12:10:24 ** help build 03-Oct-2018 12:10:24 *** installing help indices build 03-Oct-2018 12:10:24 ** building package indices build 03-Oct-2018 12:10:24 ** installing vignettes build 03-Oct-2018 12:10:24 ** testing if installed package can be loaded build 03-Oct-2018 12:10:25 * DONE (openssl) build 03-Oct-2018 12:10:25 * installing *source* package 'checkmate' ... build 03-Oct-2018 12:10:25 ** package 'checkmate' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:10:25 ** libs build 03-Oct-2018 12:10:25 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c all_missing.c -o all_missing.o build 03-Oct-2018 12:10:25 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c all_nchar.c -o all_nchar.o build 03-Oct-2018 12:10:25 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c any_infinite.c -o any_infinite.o build 03-Oct-2018 12:10:25 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c any_missing.c -o any_missing.o build 03-Oct-2018 12:10:25 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c any_nan.c -o any_nan.o build 03-Oct-2018 12:10:25 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c checks.c -o checks.o build 03-Oct-2018 12:10:26 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c guess_type.c -o guess_type.o build 03-Oct-2018 12:10:26 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c helper.c -o helper.o build 03-Oct-2018 12:10:26 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:10:26 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_integerish.c -o is_integerish.o build 03-Oct-2018 12:10:26 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qassert.c -o qassert.o build 03-Oct-2018 12:10:26 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c which_first.c -o which_first.o build 03-Oct-2018 12:10:26 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o checkmate.so all_missing.o all_nchar.o any_infinite.o any_missing.o any_nan.o checks.o guess_type.o helper.o init.o is_integerish.o qassert.o which_first.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:10:26 installing to /usr/local/lib/R/site-library/checkmate/libs build 03-Oct-2018 12:10:26 ** R build 03-Oct-2018 12:10:26 ** inst build 03-Oct-2018 12:10:26 ** byte-compile and prepare package for lazy loading build 03-Oct-2018 12:10:27 ** help build 03-Oct-2018 12:10:28 *** installing help indices build 03-Oct-2018 12:10:28 ** building package indices build 03-Oct-2018 12:10:28 ** installing vignettes build 03-Oct-2018 12:10:28 ** testing if installed package can be loaded build 03-Oct-2018 12:10:28 * DONE (checkmate) build 03-Oct-2018 12:10:29 * installing *source* package 'whisker' ... build 03-Oct-2018 12:10:29 ** package 'whisker' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:10:29 ** R build 03-Oct-2018 12:10:29 ** inst build 03-Oct-2018 12:10:29 ** preparing package for lazy loading build 03-Oct-2018 12:10:29 ** help build 03-Oct-2018 12:10:29 *** installing help indices build 03-Oct-2018 12:10:29 ** building package indices build 03-Oct-2018 12:10:29 ** testing if installed package can be loaded build 03-Oct-2018 12:10:29 * DONE (whisker) build 03-Oct-2018 12:10:30 * installing *source* package 'git2r' ... build 03-Oct-2018 12:10:30 ** package 'git2r' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:10:30 checking build system type... x86_64-unknown-linux-gnu build 03-Oct-2018 12:10:30 checking host system type... x86_64-unknown-linux-gnu build 03-Oct-2018 12:10:30 checking for gcc... gcc build 03-Oct-2018 12:10:30 checking whether the C compiler works... yes build 03-Oct-2018 12:10:30 checking for C compiler default output file name... a.out build 03-Oct-2018 12:10:30 checking for suffix of executables... build 03-Oct-2018 12:10:30 checking whether we are cross compiling... no build 03-Oct-2018 12:10:30 checking for suffix of object files... o build 03-Oct-2018 12:10:30 checking whether we are using the GNU C compiler... yes build 03-Oct-2018 12:10:30 checking whether gcc accepts -g... yes build 03-Oct-2018 12:10:30 checking for gcc option to accept ISO C89... none needed build 03-Oct-2018 12:10:30 checking for pkg-config... /usr/bin/pkg-config build 03-Oct-2018 12:10:30 checking pkg-config is at least version 0.9.0... yes build 03-Oct-2018 12:10:30 configure: Package dependency requirement 'libgit2 >= 0.26.0' could not be satisfied. build 03-Oct-2018 12:10:30 build 03-Oct-2018 12:10:30 ----------------------------------------------------------------------- build 03-Oct-2018 12:10:30 build 03-Oct-2018 12:10:30 Unable to find the libgit2 library on this system. Building 'git2r' build 03-Oct-2018 12:10:30 using the bundled source of the libgit2 library. build 03-Oct-2018 12:10:30 build 03-Oct-2018 12:10:30 To build git2r with a system installation of libgit2, please install: build 03-Oct-2018 12:10:30 libgit2-dev (package on e.g. Debian and Ubuntu) build 03-Oct-2018 12:10:30 libgit2-devel (package on e.g. Fedora, CentOS and RHEL) build 03-Oct-2018 12:10:30 libgit2 (Homebrew package on OS X) build 03-Oct-2018 12:10:30 and try again. build 03-Oct-2018 12:10:30 build 03-Oct-2018 12:10:30 If the libgit2 library is installed on your system but the git2r build 03-Oct-2018 12:10:30 configuration is unable to find it, you can specify the include and build 03-Oct-2018 12:10:30 lib path to libgit2 with: build 03-Oct-2018 12:10:30 build 03-Oct-2018 12:10:30 given you downloaded a tar-gz archive: build 03-Oct-2018 12:10:30 R CMD INSTALL git2r-.tar.gz --configure-vars='INCLUDE_DIR=/path/to/include LIB_DIR=/path/to/lib' build 03-Oct-2018 12:10:30 build 03-Oct-2018 12:10:30 or cloned the GitHub git2r repository into a directory: build 03-Oct-2018 12:10:30 R CMD INSTALL git2r/ --configure-vars='INCLUDE_DIR=/path/to/include LIB_DIR=/path/to/lib' build 03-Oct-2018 12:10:30 build 03-Oct-2018 12:10:30 or download and install git2r in R using build 03-Oct-2018 12:10:30 install.packages('git2r', type='source', configure.vars='LIB_DIR=-L/path/to/libs INCLUDE_DIR=-I/path/to/headers') build 03-Oct-2018 12:10:30 build 03-Oct-2018 12:10:30 On macOS, another possibility is to let the configuration build 03-Oct-2018 12:10:30 automatically download the libgit2 library from the Homebrew build 03-Oct-2018 12:10:30 package manager with: build 03-Oct-2018 12:10:30 build 03-Oct-2018 12:10:30 R CMD INSTALL git2r-.tar.gz --configure-vars='autobrew=yes' build 03-Oct-2018 12:10:30 or build 03-Oct-2018 12:10:30 R CMD INSTALL git2r/ --configure-vars='autobrew=yes' build 03-Oct-2018 12:10:30 or build 03-Oct-2018 12:10:30 install.packages('git2r', type='source', configure.vars='autobrew=yes') build 03-Oct-2018 12:10:30 build 03-Oct-2018 12:10:30 ----------------------------------------------------------------------- build 03-Oct-2018 12:10:30 build 03-Oct-2018 12:10:30 build 03-Oct-2018 12:10:30 configure: Attempting configuration of bundled libgit2 build 03-Oct-2018 12:10:30 checking size of void*... 8 build 03-Oct-2018 12:10:30 checking for library containing inflate... -lz build 03-Oct-2018 12:10:31 checking for library containing EVP_EncryptInit... -lcrypto build 03-Oct-2018 12:10:31 checking for library containing SSL_library_init... -lssl build 03-Oct-2018 12:10:31 checking for library containing OPENSSL_init_ssl... no build 03-Oct-2018 12:10:31 checking for library containing libssh2_version... no build 03-Oct-2018 12:10:31 checking for libssh2... no build 03-Oct-2018 12:10:31 configure: WARNING: build 03-Oct-2018 12:10:31 --------------------------------------------- build 03-Oct-2018 12:10:31 Unable to find the LibSSH2 library on this build 03-Oct-2018 12:10:31 system. Building a version without support build 03-Oct-2018 12:10:31 for SSH transport. build 03-Oct-2018 12:10:31 build 03-Oct-2018 12:10:31 To build with SSH support, please install: build 03-Oct-2018 12:10:31 libssh2-1-dev (package on e.g. Debian and Ubuntu) build 03-Oct-2018 12:10:31 libssh2-devel (package on e.g. Fedora, CentOS and RHEL) build 03-Oct-2018 12:10:31 libssh2 (Homebrew package on OS X) build 03-Oct-2018 12:10:31 and try again. build 03-Oct-2018 12:10:31 build 03-Oct-2018 12:10:31 If the LibSSH2 library is installed on build 03-Oct-2018 12:10:31 your system but the git2r configuration build 03-Oct-2018 12:10:31 is unable to find it, you can specify build 03-Oct-2018 12:10:31 the include and lib path to LibSSH2 with: build 03-Oct-2018 12:10:31 R CMD INSTALL git2r --configure-vars='LIBS=-L/path/to/libs CPPFLAGS=-I/path/to/headers' build 03-Oct-2018 12:10:31 --------------------------------------------- build 03-Oct-2018 12:10:31 checking for gawk... no build 03-Oct-2018 12:10:31 checking for mawk... mawk build 03-Oct-2018 12:10:31 checking for curl-config... /usr/bin/curl-config build 03-Oct-2018 12:10:31 checking for the version of libcurl... 7.47.0 build 03-Oct-2018 12:10:31 checking whether libcurl is usable... yes build 03-Oct-2018 12:10:31 checking for curl_free... yes build 03-Oct-2018 12:10:31 checking for ANSI C header files... no build 03-Oct-2018 12:10:31 checking for sys/types.h... yes build 03-Oct-2018 12:10:31 checking for sys/stat.h... yes build 03-Oct-2018 12:10:31 checking for stdlib.h... yes build 03-Oct-2018 12:10:31 checking for string.h... yes build 03-Oct-2018 12:10:32 checking for memory.h... yes build 03-Oct-2018 12:10:32 checking for strings.h... yes build 03-Oct-2018 12:10:32 checking for inttypes.h... yes build 03-Oct-2018 12:10:32 checking for stdint.h... yes build 03-Oct-2018 12:10:32 checking for unistd.h... yes build 03-Oct-2018 12:10:32 checking for struct stat.st_mtim... yes build 03-Oct-2018 12:10:32 checking for struct stat.st_mtimespec... no build 03-Oct-2018 12:10:32 checking for struct stat.st_mtime_nsec... no build 03-Oct-2018 12:10:32 checking for struct stat.st_mtim.tv_nsec... yes build 03-Oct-2018 12:10:32 checking for futimens... yes build 03-Oct-2018 12:10:32 checking for qsort_r... yes build 03-Oct-2018 12:10:32 checking for qsort_s... no build 03-Oct-2018 12:10:32 build 03-Oct-2018 12:10:32 ----- Results of the git2r package configure ----- build 03-Oct-2018 12:10:32 build 03-Oct-2018 12:10:32 HTTPS transport......................: yes build 03-Oct-2018 12:10:32 LibSSH2 to enable the SSH transport..: no build 03-Oct-2018 12:10:32 build 03-Oct-2018 12:10:32 -------------------------------------------------- build 03-Oct-2018 12:10:32 build 03-Oct-2018 12:10:32 configure: creating ./config.status build 03-Oct-2018 12:10:32 config.status: creating src/Makevars_libgit2 build 03-Oct-2018 12:10:32 ** libs build 03-Oct-2018 12:10:32 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r.c -o git2r.o build 03-Oct-2018 12:10:32 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_S3.c -o git2r_S3.o build 03-Oct-2018 12:10:32 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_arg.c -o git2r_arg.o build 03-Oct-2018 12:10:33 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_blame.c -o git2r_blame.o build 03-Oct-2018 12:10:33 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_blob.c -o git2r_blob.o build 03-Oct-2018 12:10:33 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_branch.c -o git2r_branch.o build 03-Oct-2018 12:10:33 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_checkout.c -o git2r_checkout.o build 03-Oct-2018 12:10:33 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_clone.c -o git2r_clone.o build 03-Oct-2018 12:10:33 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_commit.c -o git2r_commit.o build 03-Oct-2018 12:10:33 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_config.c -o git2r_config.o build 03-Oct-2018 12:10:34 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_cred.c -o git2r_cred.o build 03-Oct-2018 12:10:34 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_diff.c -o git2r_diff.o build 03-Oct-2018 12:10:34 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_error.c -o git2r_error.o build 03-Oct-2018 12:10:34 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_graph.c -o git2r_graph.o build 03-Oct-2018 12:10:34 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_index.c -o git2r_index.o build 03-Oct-2018 12:10:34 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_libgit2.c -o git2r_libgit2.o build 03-Oct-2018 12:10:34 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_merge.c -o git2r_merge.o build 03-Oct-2018 12:10:34 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_note.c -o git2r_note.o build 03-Oct-2018 12:10:34 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_object.c -o git2r_object.o build 03-Oct-2018 12:10:35 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_odb.c -o git2r_odb.o build 03-Oct-2018 12:10:35 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_oid.c -o git2r_oid.o build 03-Oct-2018 12:10:35 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_push.c -o git2r_push.o build 03-Oct-2018 12:10:35 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_reference.c -o git2r_reference.o build 03-Oct-2018 12:10:35 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_reflog.c -o git2r_reflog.o build 03-Oct-2018 12:10:35 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_remote.c -o git2r_remote.o build 03-Oct-2018 12:10:35 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_repository.c -o git2r_repository.o build 03-Oct-2018 12:10:35 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_reset.c -o git2r_reset.o build 03-Oct-2018 12:10:35 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_revparse.c -o git2r_revparse.o build 03-Oct-2018 12:10:36 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_revwalk.c -o git2r_revwalk.o build 03-Oct-2018 12:10:36 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_signature.c -o git2r_signature.o build 03-Oct-2018 12:10:36 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_stash.c -o git2r_stash.o build 03-Oct-2018 12:10:36 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_status.c -o git2r_status.o build 03-Oct-2018 12:10:36 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_tag.c -o git2r_tag.o build 03-Oct-2018 12:10:36 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_transfer.c -o git2r_transfer.o build 03-Oct-2018 12:10:36 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c git2r_tree.c -o git2r_tree.o build 03-Oct-2018 12:10:36 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/annotated_commit.c -o libgit2/src/annotated_commit.o build 03-Oct-2018 12:10:36 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/apply.c -o libgit2/src/apply.o build 03-Oct-2018 12:10:37 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/attr_file.c -o libgit2/src/attr_file.o build 03-Oct-2018 12:10:37 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/attr.c -o libgit2/src/attr.o build 03-Oct-2018 12:10:37 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/attrcache.c -o libgit2/src/attrcache.o build 03-Oct-2018 12:10:37 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/blame_git.c -o libgit2/src/blame_git.o build 03-Oct-2018 12:10:38 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/blame.c -o libgit2/src/blame.o build 03-Oct-2018 12:10:38 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/blob.c -o libgit2/src/blob.o build 03-Oct-2018 12:10:38 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/branch.c -o libgit2/src/branch.o build 03-Oct-2018 12:10:38 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/buf_text.c -o libgit2/src/buf_text.o build 03-Oct-2018 12:10:38 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/buffer.c -o libgit2/src/buffer.o build 03-Oct-2018 12:10:39 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/cache.c -o libgit2/src/cache.o build 03-Oct-2018 12:10:39 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/checkout.c -o libgit2/src/checkout.o build 03-Oct-2018 12:10:39 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/cherrypick.c -o libgit2/src/cherrypick.o build 03-Oct-2018 12:10:40 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/clone.c -o libgit2/src/clone.o build 03-Oct-2018 12:10:40 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/commit_list.c -o libgit2/src/commit_list.o build 03-Oct-2018 12:10:40 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/commit.c -o libgit2/src/commit.o build 03-Oct-2018 12:10:40 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/config_cache.c -o libgit2/src/config_cache.o build 03-Oct-2018 12:10:40 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/config_file.c -o libgit2/src/config_file.o build 03-Oct-2018 12:10:41 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/config_parse.c -o libgit2/src/config_parse.o build 03-Oct-2018 12:10:41 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/config.c -o libgit2/src/config.o build 03-Oct-2018 12:10:41 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/crlf.c -o libgit2/src/crlf.o build 03-Oct-2018 12:10:41 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/date.c -o libgit2/src/date.o build 03-Oct-2018 12:10:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/delta.c -o libgit2/src/delta.o build 03-Oct-2018 12:10:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/describe.c -o libgit2/src/describe.o build 03-Oct-2018 12:10:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/diff_driver.c -o libgit2/src/diff_driver.o build 03-Oct-2018 12:10:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/diff_file.c -o libgit2/src/diff_file.o build 03-Oct-2018 12:10:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/diff_generate.c -o libgit2/src/diff_generate.o build 03-Oct-2018 12:10:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/diff_parse.c -o libgit2/src/diff_parse.o build 03-Oct-2018 12:10:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/diff_print.c -o libgit2/src/diff_print.o build 03-Oct-2018 12:10:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/diff_stats.c -o libgit2/src/diff_stats.o build 03-Oct-2018 12:10:44 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/diff_tform.c -o libgit2/src/diff_tform.o build 03-Oct-2018 12:10:44 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/diff_xdiff.c -o libgit2/src/diff_xdiff.o build 03-Oct-2018 12:10:44 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/diff.c -o libgit2/src/diff.o build 03-Oct-2018 12:10:44 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/errors.c -o libgit2/src/errors.o build 03-Oct-2018 12:10:44 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/fetch.c -o libgit2/src/fetch.o build 03-Oct-2018 12:10:45 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/fetchhead.c -o libgit2/src/fetchhead.o build 03-Oct-2018 12:10:45 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/filebuf.c -o libgit2/src/filebuf.o build 03-Oct-2018 12:10:45 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/fileops.c -o libgit2/src/fileops.o build 03-Oct-2018 12:10:45 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/filter.c -o libgit2/src/filter.o build 03-Oct-2018 12:10:45 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/fnmatch.c -o libgit2/src/fnmatch.o build 03-Oct-2018 12:10:46 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/global.c -o libgit2/src/global.o build 03-Oct-2018 12:10:46 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/graph.c -o libgit2/src/graph.o build 03-Oct-2018 12:10:46 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/hash.c -o libgit2/src/hash.o build 03-Oct-2018 12:10:46 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/hashsig.c -o libgit2/src/hashsig.o build 03-Oct-2018 12:10:46 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/ident.c -o libgit2/src/ident.o build 03-Oct-2018 12:10:46 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/idxmap.c -o libgit2/src/idxmap.o build 03-Oct-2018 12:10:47 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/ignore.c -o libgit2/src/ignore.o build 03-Oct-2018 12:10:47 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/index.c -o libgit2/src/index.o build 03-Oct-2018 12:10:48 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/indexer.c -o libgit2/src/indexer.o build 03-Oct-2018 12:10:48 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/iterator.c -o libgit2/src/iterator.o build 03-Oct-2018 12:10:49 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/merge_driver.c -o libgit2/src/merge_driver.o build 03-Oct-2018 12:10:49 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/merge_file.c -o libgit2/src/merge_file.o build 03-Oct-2018 12:10:49 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/merge.c -o libgit2/src/merge.o build 03-Oct-2018 12:10:50 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/message.c -o libgit2/src/message.o build 03-Oct-2018 12:10:50 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/mwindow.c -o libgit2/src/mwindow.o build 03-Oct-2018 12:10:50 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/netops.c -o libgit2/src/netops.o build 03-Oct-2018 12:10:50 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/notes.c -o libgit2/src/notes.o build 03-Oct-2018 12:10:50 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/object_api.c -o libgit2/src/object_api.o build 03-Oct-2018 12:10:51 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/object.c -o libgit2/src/object.o build 03-Oct-2018 12:10:51 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/odb_loose.c -o libgit2/src/odb_loose.o build 03-Oct-2018 12:10:51 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/odb_mempack.c -o libgit2/src/odb_mempack.o build 03-Oct-2018 12:10:51 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/odb_pack.c -o libgit2/src/odb_pack.o build 03-Oct-2018 12:10:51 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/odb.c -o libgit2/src/odb.o build 03-Oct-2018 12:10:52 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/offmap.c -o libgit2/src/offmap.o build 03-Oct-2018 12:10:52 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/oid.c -o libgit2/src/oid.o build 03-Oct-2018 12:10:52 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/oidarray.c -o libgit2/src/oidarray.o build 03-Oct-2018 12:10:52 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/oidmap.c -o libgit2/src/oidmap.o build 03-Oct-2018 12:10:52 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/pack-objects.c -o libgit2/src/pack-objects.o build 03-Oct-2018 12:10:53 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/pack.c -o libgit2/src/pack.o build 03-Oct-2018 12:10:53 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/parse.c -o libgit2/src/parse.o build 03-Oct-2018 12:10:53 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/patch_generate.c -o libgit2/src/patch_generate.o build 03-Oct-2018 12:10:54 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/patch_parse.c -o libgit2/src/patch_parse.o build 03-Oct-2018 12:10:54 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/patch.c -o libgit2/src/patch.o build 03-Oct-2018 12:10:54 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/path.c -o libgit2/src/path.o build 03-Oct-2018 12:10:55 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/pathspec.c -o libgit2/src/pathspec.o build 03-Oct-2018 12:10:55 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/pool.c -o libgit2/src/pool.o build 03-Oct-2018 12:10:55 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/posix.c -o libgit2/src/posix.o build 03-Oct-2018 12:10:55 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/pqueue.c -o libgit2/src/pqueue.o build 03-Oct-2018 12:10:55 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/proxy.c -o libgit2/src/proxy.o build 03-Oct-2018 12:10:55 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/push.c -o libgit2/src/push.o build 03-Oct-2018 12:10:55 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/rebase.c -o libgit2/src/rebase.o build 03-Oct-2018 12:10:56 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/refdb_fs.c -o libgit2/src/refdb_fs.o build 03-Oct-2018 12:10:56 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/refdb.c -o libgit2/src/refdb.o build 03-Oct-2018 12:10:56 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/reflog.c -o libgit2/src/reflog.o build 03-Oct-2018 12:10:57 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/refs.c -o libgit2/src/refs.o build 03-Oct-2018 12:10:57 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/refspec.c -o libgit2/src/refspec.o build 03-Oct-2018 12:10:57 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/remote.c -o libgit2/src/remote.o build 03-Oct-2018 12:10:58 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/repository.c -o libgit2/src/repository.o build 03-Oct-2018 12:10:58 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/reset.c -o libgit2/src/reset.o build 03-Oct-2018 12:10:59 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/revert.c -o libgit2/src/revert.o build 03-Oct-2018 12:10:59 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/revparse.c -o libgit2/src/revparse.o build 03-Oct-2018 12:10:59 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/revwalk.c -o libgit2/src/revwalk.o build 03-Oct-2018 12:10:59 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/settings.c -o libgit2/src/settings.o build 03-Oct-2018 12:10:59 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/sha1_lookup.c -o libgit2/src/sha1_lookup.o build 03-Oct-2018 12:11:00 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/signature.c -o libgit2/src/signature.o build 03-Oct-2018 12:11:00 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/sortedcache.c -o libgit2/src/sortedcache.o build 03-Oct-2018 12:11:00 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/stash.c -o libgit2/src/stash.o build 03-Oct-2018 12:11:00 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/status.c -o libgit2/src/status.o build 03-Oct-2018 12:11:00 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/strmap.c -o libgit2/src/strmap.o build 03-Oct-2018 12:11:01 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/submodule.c -o libgit2/src/submodule.o build 03-Oct-2018 12:11:01 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/sysdir.c -o libgit2/src/sysdir.o build 03-Oct-2018 12:11:01 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/tag.c -o libgit2/src/tag.o build 03-Oct-2018 12:11:01 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/thread-utils.c -o libgit2/src/thread-utils.o build 03-Oct-2018 12:11:02 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/trace.c -o libgit2/src/trace.o build 03-Oct-2018 12:11:02 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/trailer.c -o libgit2/src/trailer.o build 03-Oct-2018 12:11:02 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/transaction.c -o libgit2/src/transaction.o build 03-Oct-2018 12:11:02 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/transport.c -o libgit2/src/transport.o build 03-Oct-2018 12:11:02 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/tree-cache.c -o libgit2/src/tree-cache.o build 03-Oct-2018 12:11:02 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/tree.c -o libgit2/src/tree.o build 03-Oct-2018 12:11:03 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/tsort.c -o libgit2/src/tsort.o build 03-Oct-2018 12:11:03 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/util.c -o libgit2/src/util.o build 03-Oct-2018 12:11:03 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/varint.c -o libgit2/src/varint.o build 03-Oct-2018 12:11:03 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/vector.c -o libgit2/src/vector.o build 03-Oct-2018 12:11:03 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/worktree.c -o libgit2/src/worktree.o build 03-Oct-2018 12:11:03 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/zstream.c -o libgit2/src/zstream.o build 03-Oct-2018 12:11:04 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/streams/curl.c -o libgit2/src/streams/curl.o build 03-Oct-2018 12:11:04 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/streams/openssl.c -o libgit2/src/streams/openssl.o build 03-Oct-2018 12:11:04 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/streams/socket.c -o libgit2/src/streams/socket.o build 03-Oct-2018 12:11:04 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/streams/stransport.c -o libgit2/src/streams/stransport.o build 03-Oct-2018 12:11:04 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/streams/tls.c -o libgit2/src/streams/tls.o build 03-Oct-2018 12:11:04 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/transports/auth.c -o libgit2/src/transports/auth.o build 03-Oct-2018 12:11:04 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/transports/cred_helpers.c -o libgit2/src/transports/cred_helpers.o build 03-Oct-2018 12:11:04 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/transports/cred.c -o libgit2/src/transports/cred.o build 03-Oct-2018 12:11:05 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/transports/git.c -o libgit2/src/transports/git.o build 03-Oct-2018 12:11:05 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/transports/http.c -o libgit2/src/transports/http.o build 03-Oct-2018 12:11:05 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/transports/local.c -o libgit2/src/transports/local.o build 03-Oct-2018 12:11:05 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/transports/smart_pkt.c -o libgit2/src/transports/smart_pkt.o build 03-Oct-2018 12:11:06 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/transports/smart_protocol.c -o libgit2/src/transports/smart_protocol.o build 03-Oct-2018 12:11:06 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/transports/smart.c -o libgit2/src/transports/smart.o build 03-Oct-2018 12:11:06 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/transports/ssh.c -o libgit2/src/transports/ssh.o build 03-Oct-2018 12:11:06 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/unix/map.c -o libgit2/src/unix/map.o build 03-Oct-2018 12:11:07 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/unix/realpath.c -o libgit2/src/unix/realpath.o build 03-Oct-2018 12:11:07 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/xdiff/xdiffi.c -o libgit2/src/xdiff/xdiffi.o build 03-Oct-2018 12:11:07 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/xdiff/xemit.c -o libgit2/src/xdiff/xemit.o build 03-Oct-2018 12:11:07 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/xdiff/xhistogram.c -o libgit2/src/xdiff/xhistogram.o build 03-Oct-2018 12:11:07 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/xdiff/xmerge.c -o libgit2/src/xdiff/xmerge.o build 03-Oct-2018 12:11:07 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/xdiff/xpatience.c -o libgit2/src/xdiff/xpatience.o build 03-Oct-2018 12:11:08 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/xdiff/xprepare.c -o libgit2/src/xdiff/xprepare.o build 03-Oct-2018 12:11:08 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/src/xdiff/xutils.c -o libgit2/src/xdiff/xutils.o build 03-Oct-2018 12:11:08 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -DGIT_ARCH_64 -DGIT_CURL -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBGIT2_NO_FEATURES_H -DR_NO_REMAP -DSTRICT_R_HEADERS -DGIT_SHA1_OPENSSL=1 -DGIT_OPENSSL -DGIT_HTTPS=1 -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libgit2/deps/http-parser/http_parser.c -o libgit2/deps/http-parser/http_parser.o build 03-Oct-2018 12:11:08 ar rcs libmygit.a libgit2/src/annotated_commit.o libgit2/src/apply.o libgit2/src/attr_file.o libgit2/src/attr.o libgit2/src/attrcache.o libgit2/src/blame_git.o libgit2/src/blame.o libgit2/src/blob.o libgit2/src/branch.o libgit2/src/buf_text.o libgit2/src/buffer.o libgit2/src/cache.o libgit2/src/checkout.o libgit2/src/cherrypick.o libgit2/src/clone.o libgit2/src/commit_list.o libgit2/src/commit.o libgit2/src/config_cache.o libgit2/src/config_file.o libgit2/src/config_parse.o libgit2/src/config.o libgit2/src/crlf.o libgit2/src/date.o libgit2/src/delta.o libgit2/src/describe.o libgit2/src/diff_driver.o libgit2/src/diff_file.o libgit2/src/diff_generate.o libgit2/src/diff_parse.o libgit2/src/diff_print.o libgit2/src/diff_stats.o libgit2/src/diff_tform.o libgit2/src/diff_xdiff.o libgit2/src/diff.o libgit2/src/errors.o libgit2/src/fetch.o libgit2/src/fetchhead.o libgit2/src/filebuf.o libgit2/src/fileops.o libgit2/src/filter.o libgit2/src/fnmatch.o libgit2/src/global.o libgit2/src/graph.o libgit2/src/hash.o libgit2/src/hashsig.o libgit2/src/ident.o libgit2/src/idxmap.o libgit2/src/ignore.o libgit2/src/index.o libgit2/src/indexer.o libgit2/src/iterator.o libgit2/src/merge_driver.o libgit2/src/merge_file.o libgit2/src/merge.o libgit2/src/message.o libgit2/src/mwindow.o libgit2/src/netops.o libgit2/src/notes.o libgit2/src/object_api.o libgit2/src/object.o libgit2/src/odb_loose.o libgit2/src/odb_mempack.o libgit2/src/odb_pack.o libgit2/src/odb.o libgit2/src/offmap.o libgit2/src/oid.o libgit2/src/oidarray.o libgit2/src/oidmap.o libgit2/src/pack-objects.o libgit2/src/pack.o libgit2/src/parse.o libgit2/src/patch_generate.o libgit2/src/patch_parse.o libgit2/src/patch.o libgit2/src/path.o libgit2/src/pathspec.o libgit2/src/pool.o libgit2/src/posix.o libgit2/src/pqueue.o libgit2/src/proxy.o libgit2/src/push.o libgit2/src/rebase.o libgit2/src/refdb_fs.o libgit2/src/refdb.o libgit2/src/reflog.o libgit2/src/refs.o libgit2/src/refspec.o libgit2/src/remote.o libgit2/src/repository.o libgit2/src/reset.o libgit2/src/revert.o libgit2/src/revparse.o libgit2/src/revwalk.o libgit2/src/settings.o libgit2/src/sha1_lookup.o libgit2/src/signature.o libgit2/src/sortedcache.o libgit2/src/stash.o libgit2/src/status.o libgit2/src/strmap.o libgit2/src/submodule.o libgit2/src/sysdir.o libgit2/src/tag.o libgit2/src/thread-utils.o libgit2/src/trace.o libgit2/src/trailer.o libgit2/src/transaction.o libgit2/src/transport.o libgit2/src/tree-cache.o libgit2/src/tree.o libgit2/src/tsort.o libgit2/src/util.o libgit2/src/varint.o libgit2/src/vector.o libgit2/src/worktree.o libgit2/src/zstream.o libgit2/src/streams/curl.o libgit2/src/streams/openssl.o libgit2/src/streams/socket.o libgit2/src/streams/stransport.o libgit2/src/streams/tls.o libgit2/src/transports/auth.o libgit2/src/transports/cred_helpers.o libgit2/src/transports/cred.o libgit2/src/transports/git.o libgit2/src/transports/http.o libgit2/src/transports/local.o libgit2/src/transports/smart_pkt.o libgit2/src/transports/smart_protocol.o libgit2/src/transports/smart.o libgit2/src/transports/ssh.o libgit2/src/unix/map.o libgit2/src/unix/realpath.o libgit2/src/xdiff/xdiffi.o libgit2/src/xdiff/xemit.o libgit2/src/xdiff/xhistogram.o libgit2/src/xdiff/xmerge.o libgit2/src/xdiff/xpatience.o libgit2/src/xdiff/xprepare.o libgit2/src/xdiff/xutils.o libgit2/deps/http-parser/http_parser.o build 03-Oct-2018 12:11:08 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o git2r.so git2r.o git2r_S3.o git2r_arg.o git2r_blame.o git2r_blob.o git2r_branch.o git2r_checkout.o git2r_clone.o git2r_commit.o git2r_config.o git2r_cred.o git2r_diff.o git2r_error.o git2r_graph.o git2r_index.o git2r_libgit2.o git2r_merge.o git2r_note.o git2r_object.o git2r_odb.o git2r_oid.o git2r_push.o git2r_reference.o git2r_reflog.o git2r_remote.o git2r_repository.o git2r_reset.o git2r_revparse.o git2r_revwalk.o git2r_signature.o git2r_stash.o git2r_status.o git2r_tag.o git2r_transfer.o git2r_tree.o -L. -lmygit -lssl -lcrypto -lz -L/usr/lib/x86_64-linux-gnu -lcurl -L/usr/lib/R/lib -lR build 03-Oct-2018 12:11:09 installing to /usr/local/lib/R/site-library/git2r/libs build 03-Oct-2018 12:11:09 ** R build 03-Oct-2018 12:11:09 ** inst build 03-Oct-2018 12:11:09 ** preparing package for lazy loading build 03-Oct-2018 12:11:09 ** help build 03-Oct-2018 12:11:09 *** installing help indices build 03-Oct-2018 12:11:09 ** building package indices build 03-Oct-2018 12:11:09 ** testing if installed package can be loaded build 03-Oct-2018 12:11:10 * DONE (git2r) build 03-Oct-2018 12:11:10 * installing *source* package 'fontBitstreamVera' ... build 03-Oct-2018 12:11:10 ** package 'fontBitstreamVera' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:11:10 ** inst build 03-Oct-2018 12:11:10 ** help build 03-Oct-2018 12:11:10 No man pages found in package 'fontBitstreamVera' build 03-Oct-2018 12:11:10 *** installing help indices build 03-Oct-2018 12:11:10 ** building package indices build 03-Oct-2018 12:11:10 ** testing if installed package can be loaded build 03-Oct-2018 12:11:10 * DONE (fontBitstreamVera) build 03-Oct-2018 12:11:10 * installing *source* package 'fontLiberation' ... build 03-Oct-2018 12:11:10 ** package 'fontLiberation' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:11:10 ** inst build 03-Oct-2018 12:11:10 ** help build 03-Oct-2018 12:11:10 No man pages found in package 'fontLiberation' build 03-Oct-2018 12:11:10 *** installing help indices build 03-Oct-2018 12:11:11 ** building package indices build 03-Oct-2018 12:11:11 ** testing if installed package can be loaded build 03-Oct-2018 12:11:11 * DONE (fontLiberation) build 03-Oct-2018 12:11:11 * installing *source* package 'prettyunits' ... build 03-Oct-2018 12:11:11 ** package 'prettyunits' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:11:11 ** R build 03-Oct-2018 12:11:11 ** inst build 03-Oct-2018 12:11:11 ** preparing package for lazy loading build 03-Oct-2018 12:11:11 ** help build 03-Oct-2018 12:11:11 *** installing help indices build 03-Oct-2018 12:11:11 ** building package indices build 03-Oct-2018 12:11:11 ** testing if installed package can be loaded build 03-Oct-2018 12:11:11 * DONE (prettyunits) build 03-Oct-2018 12:11:11 * installing *source* package 'gtools' ... build 03-Oct-2018 12:11:11 ** package 'gtools' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:11:11 ** libs build 03-Oct-2018 12:11:11 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gtools_load.c -o gtools_load.o build 03-Oct-2018 12:11:11 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c roman2int.c -o roman2int.o build 03-Oct-2018 12:11:12 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c setTCPNoDelay.c -o setTCPNoDelay.o build 03-Oct-2018 12:11:12 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o gtools.so gtools_load.o roman2int.o setTCPNoDelay.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:11:12 installing to /usr/local/lib/R/site-library/gtools/libs build 03-Oct-2018 12:11:12 ** R build 03-Oct-2018 12:11:12 ** data build 03-Oct-2018 12:11:12 ** preparing package for lazy loading build 03-Oct-2018 12:11:12 ** help build 03-Oct-2018 12:11:12 *** installing help indices build 03-Oct-2018 12:11:12 ** building package indices build 03-Oct-2018 12:11:12 ** testing if installed package can be loaded build 03-Oct-2018 12:11:12 * DONE (gtools) build 03-Oct-2018 12:11:12 * installing *source* package 'gridExtra' ... build 03-Oct-2018 12:11:12 ** package 'gridExtra' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:11:12 ** R build 03-Oct-2018 12:11:12 ** inst build 03-Oct-2018 12:11:12 ** preparing package for lazy loading build 03-Oct-2018 12:11:12 ** help build 03-Oct-2018 12:11:12 *** installing help indices build 03-Oct-2018 12:11:13 ** building package indices build 03-Oct-2018 12:11:13 ** installing vignettes build 03-Oct-2018 12:11:13 ** testing if installed package can be loaded build 03-Oct-2018 12:11:13 * DONE (gridExtra) build 03-Oct-2018 12:11:13 * installing *source* package 'praise' ... build 03-Oct-2018 12:11:13 ** package 'praise' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:11:13 ** R build 03-Oct-2018 12:11:13 ** inst build 03-Oct-2018 12:11:13 ** preparing package for lazy loading build 03-Oct-2018 12:11:13 ** help build 03-Oct-2018 12:11:13 *** installing help indices build 03-Oct-2018 12:11:13 ** building package indices build 03-Oct-2018 12:11:13 ** testing if installed package can be loaded build 03-Oct-2018 12:11:13 * DONE (praise) build 03-Oct-2018 12:11:13 * installing *source* package 'rex' ... build 03-Oct-2018 12:11:13 ** package 'rex' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:11:13 ** R build 03-Oct-2018 12:11:13 ** inst build 03-Oct-2018 12:11:13 ** preparing package for lazy loading build 03-Oct-2018 12:11:13 ** help build 03-Oct-2018 12:11:14 *** installing help indices build 03-Oct-2018 12:11:14 ** building package indices build 03-Oct-2018 12:11:14 ** installing vignettes build 03-Oct-2018 12:11:14 ** testing if installed package can be loaded build 03-Oct-2018 12:11:14 * DONE (rex) build 03-Oct-2018 12:11:15 * installing *source* package 'survival' ... build 03-Oct-2018 12:11:15 ** package 'survival' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:11:15 ** libs build 03-Oct-2018 12:11:15 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c agexact.c -o agexact.o build 03-Oct-2018 12:11:15 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c agfit4.c -o agfit4.o build 03-Oct-2018 12:11:15 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c agfit5.c -o agfit5.o build 03-Oct-2018 12:11:16 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c agmart.c -o agmart.o build 03-Oct-2018 12:11:16 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c agmart2.c -o agmart2.o build 03-Oct-2018 12:11:16 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c agmart3.c -o agmart3.o build 03-Oct-2018 12:11:16 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c agscore.c -o agscore.o build 03-Oct-2018 12:11:16 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c agsurv3.c -o agsurv3.o build 03-Oct-2018 12:11:16 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c agsurv4.c -o agsurv4.o build 03-Oct-2018 12:11:16 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c agsurv5.c -o agsurv5.o build 03-Oct-2018 12:11:16 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c chinv2.c -o chinv2.o build 03-Oct-2018 12:11:16 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c chinv3.c -o chinv3.o build 03-Oct-2018 12:11:16 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cholesky2.c -o cholesky2.o build 03-Oct-2018 12:11:17 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cholesky3.c -o cholesky3.o build 03-Oct-2018 12:11:17 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cholesky5.c -o cholesky5.o build 03-Oct-2018 12:11:17 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c chsolve2.c -o chsolve2.o build 03-Oct-2018 12:11:17 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c chsolve3.c -o chsolve3.o build 03-Oct-2018 12:11:17 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c chsolve5.c -o chsolve5.o build 03-Oct-2018 12:11:17 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c concordance1.c -o concordance1.o build 03-Oct-2018 12:11:17 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cox_Rcallback.c -o cox_Rcallback.o build 03-Oct-2018 12:11:17 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coxcount1.c -o coxcount1.o build 03-Oct-2018 12:11:17 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coxdetail.c -o coxdetail.o build 03-Oct-2018 12:11:17 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coxexact.c -o coxexact.o build 03-Oct-2018 12:11:18 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coxfit5.c -o coxfit5.o build 03-Oct-2018 12:11:18 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coxfit6.c -o coxfit6.o build 03-Oct-2018 12:11:18 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coxmart.c -o coxmart.o build 03-Oct-2018 12:11:18 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coxmart2.c -o coxmart2.o build 03-Oct-2018 12:11:18 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coxph_wtest.c -o coxph_wtest.o build 03-Oct-2018 12:11:18 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coxsafe.c -o coxsafe.o build 03-Oct-2018 12:11:19 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coxscho.c -o coxscho.o build 03-Oct-2018 12:11:19 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coxscore.c -o coxscore.o build 03-Oct-2018 12:11:19 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dmatrix.c -o dmatrix.o build 03-Oct-2018 12:11:19 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c doloop.c -o doloop.o build 03-Oct-2018 12:11:19 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c finegray.c -o finegray.o build 03-Oct-2018 12:11:19 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gchol.c -o gchol.o build 03-Oct-2018 12:11:19 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:11:19 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pyears1.c -o pyears1.o build 03-Oct-2018 12:11:19 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pyears2.c -o pyears2.o build 03-Oct-2018 12:11:19 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pyears3b.c -o pyears3b.o build 03-Oct-2018 12:11:19 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pystep.c -o pystep.o build 03-Oct-2018 12:11:19 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c survConcordance.c -o survConcordance.o build 03-Oct-2018 12:11:20 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c survdiff2.c -o survdiff2.o build 03-Oct-2018 12:11:20 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c survfit4.c -o survfit4.o build 03-Oct-2018 12:11:20 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c survfitci.c -o survfitci.o build 03-Oct-2018 12:11:20 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c survpenal.c -o survpenal.o build 03-Oct-2018 12:11:20 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c survreg6.c -o survreg6.o build 03-Oct-2018 12:11:20 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c survreg7.c -o survreg7.o build 03-Oct-2018 12:11:20 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c survregc1.c -o survregc1.o build 03-Oct-2018 12:11:20 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c survregc2.c -o survregc2.o build 03-Oct-2018 12:11:21 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c survsplit.c -o survsplit.o build 03-Oct-2018 12:11:21 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tmerge.c -o tmerge.o build 03-Oct-2018 12:11:21 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o survival.so agexact.o agfit4.o agfit5.o agmart.o agmart2.o agmart3.o agscore.o agsurv3.o agsurv4.o agsurv5.o chinv2.o chinv3.o cholesky2.o cholesky3.o cholesky5.o chsolve2.o chsolve3.o chsolve5.o concordance1.o cox_Rcallback.o coxcount1.o coxdetail.o coxexact.o coxfit5.o coxfit6.o coxmart.o coxmart2.o coxph_wtest.o coxsafe.o coxscho.o coxscore.o dmatrix.o doloop.o finegray.o gchol.o init.o pyears1.o pyears2.o pyears3b.o pystep.o survConcordance.o survdiff2.o survfit4.o survfitci.o survpenal.o survreg6.o survreg7.o survregc1.o survregc2.o survsplit.o tmerge.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:11:21 installing to /usr/local/lib/R/site-library/survival/libs build 03-Oct-2018 12:11:21 ** R build 03-Oct-2018 12:11:21 ** data build 03-Oct-2018 12:11:21 *** moving datasets to lazyload DB build 03-Oct-2018 12:11:21 ** inst build 03-Oct-2018 12:11:21 ** byte-compile and prepare package for lazy loading build 03-Oct-2018 12:11:31 ** help build 03-Oct-2018 12:11:31 *** installing help indices build 03-Oct-2018 12:11:32 ** building package indices build 03-Oct-2018 12:11:32 ** installing vignettes build 03-Oct-2018 12:11:32 ** testing if installed package can be loaded build 03-Oct-2018 12:11:33 * DONE (survival) build 03-Oct-2018 12:11:33 * installing *source* package 'Formula' ... build 03-Oct-2018 12:11:33 ** package 'Formula' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:11:33 ** R build 03-Oct-2018 12:11:33 ** inst build 03-Oct-2018 12:11:33 ** preparing package for lazy loading build 03-Oct-2018 12:11:33 ** help build 03-Oct-2018 12:11:33 *** installing help indices build 03-Oct-2018 12:11:33 ** building package indices build 03-Oct-2018 12:11:33 ** installing vignettes build 03-Oct-2018 12:11:33 ** testing if installed package can be loaded build 03-Oct-2018 12:11:33 * DONE (Formula) build 03-Oct-2018 12:11:34 * installing *source* package 'acepack' ... build 03-Oct-2018 12:11:34 ** package 'acepack' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:11:34 ** libs build 03-Oct-2018 12:11:34 gfortran -fpic -g -O2 -fstack-protector-strong -c ace.f -o ace.o build 03-Oct-2018 12:11:34 gfortran -fpic -g -O2 -fstack-protector-strong -c avas.f -o avas.o build 03-Oct-2018 12:11:34 gfortran -fpic -g -O2 -fstack-protector-strong -c rlsmo.f -o rlsmo.o build 03-Oct-2018 12:11:34 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o acepack.so ace.o avas.o rlsmo.o -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR build 03-Oct-2018 12:11:34 installing to /usr/local/lib/R/site-library/acepack/libs build 03-Oct-2018 12:11:34 ** R build 03-Oct-2018 12:11:34 ** inst build 03-Oct-2018 12:11:34 ** preparing package for lazy loading build 03-Oct-2018 12:11:34 ** help build 03-Oct-2018 12:11:35 *** installing help indices build 03-Oct-2018 12:11:35 ** building package indices build 03-Oct-2018 12:11:35 ** testing if installed package can be loaded build 03-Oct-2018 12:11:35 * DONE (acepack) build 03-Oct-2018 12:11:35 * installing *source* package 'data.table' ... build 03-Oct-2018 12:11:35 ** package 'data.table' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:11:35 ** libs build 03-Oct-2018 12:11:35 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c assign.c -o assign.o build 03-Oct-2018 12:11:36 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c between.c -o between.o build 03-Oct-2018 12:11:36 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bmerge.c -o bmerge.o build 03-Oct-2018 12:11:37 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c chmatch.c -o chmatch.o build 03-Oct-2018 12:11:37 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dogroups.c -o dogroups.o build 03-Oct-2018 12:11:37 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fastmean.c -o fastmean.o build 03-Oct-2018 12:11:37 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fcast.c -o fcast.o build 03-Oct-2018 12:11:37 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fmelt.c -o fmelt.o build 03-Oct-2018 12:11:38 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c forder.c -o forder.o build 03-Oct-2018 12:11:38 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c frank.c -o frank.o build 03-Oct-2018 12:11:39 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fread.c -o fread.o build 03-Oct-2018 12:11:40 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c freadR.c -o freadR.o build 03-Oct-2018 12:11:40 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fsort.c -o fsort.o build 03-Oct-2018 12:11:41 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fwrite.c -o fwrite.o build 03-Oct-2018 12:11:41 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fwriteR.c -o fwriteR.o build 03-Oct-2018 12:11:41 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gsumm.c -o gsumm.o build 03-Oct-2018 12:11:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ijoin.c -o ijoin.o build 03-Oct-2018 12:11:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:11:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c inrange.c -o inrange.o build 03-Oct-2018 12:11:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nqrecreateindices.c -o nqrecreateindices.o build 03-Oct-2018 12:11:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c openmp-utils.c -o openmp-utils.o build 03-Oct-2018 12:11:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c quickselect.c -o quickselect.o build 03-Oct-2018 12:11:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rbindlist.c -o rbindlist.o build 03-Oct-2018 12:11:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c reorder.c -o reorder.o build 03-Oct-2018 12:11:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c shift.c -o shift.o build 03-Oct-2018 12:11:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c subset.c -o subset.o build 03-Oct-2018 12:11:44 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transpose.c -o transpose.o build 03-Oct-2018 12:11:44 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c uniqlist.c -o uniqlist.o build 03-Oct-2018 12:11:44 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c vecseq.c -o vecseq.o build 03-Oct-2018 12:11:44 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c wrappers.c -o wrappers.o build 03-Oct-2018 12:11:44 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o data.table.so assign.o between.o bmerge.o chmatch.o dogroups.o fastmean.o fcast.o fmelt.o forder.o frank.o fread.o freadR.o fsort.o fwrite.o fwriteR.o gsumm.o ijoin.o init.o inrange.o nqrecreateindices.o openmp-utils.o quickselect.o rbindlist.o reorder.o shift.o subset.o transpose.o uniqlist.o vecseq.o wrappers.o -fopenmp -L/usr/lib/R/lib -lR build 03-Oct-2018 12:11:44 mv data.table.so datatable.so build 03-Oct-2018 12:11:44 if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id datatable.so datatable.so; fi build 03-Oct-2018 12:11:44 installing to /usr/local/lib/R/site-library/data.table/libs build 03-Oct-2018 12:11:44 ** R build 03-Oct-2018 12:11:44 ** inst build 03-Oct-2018 12:11:44 ** byte-compile and prepare package for lazy loading build 03-Oct-2018 12:11:48 ** help build 03-Oct-2018 12:11:48 *** installing help indices build 03-Oct-2018 12:11:48 ** building package indices build 03-Oct-2018 12:11:48 ** installing vignettes build 03-Oct-2018 12:11:48 ** testing if installed package can be loaded build 03-Oct-2018 12:11:49 * DONE (data.table) build 03-Oct-2018 12:11:49 * installing *source* package 'mvtnorm' ... build 03-Oct-2018 12:11:49 ** package 'mvtnorm' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:11:49 ** libs build 03-Oct-2018 12:11:49 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c C_FORTRAN_interface.c -o C_FORTRAN_interface.o build 03-Oct-2018 12:11:49 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c miwa.c -o miwa.o build 03-Oct-2018 12:11:49 gfortran -fpic -g -O2 -fstack-protector-strong -c mvt.f -o mvt.o build 03-Oct-2018 12:11:50 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mvtnorm-init.c -o mvtnorm-init.o build 03-Oct-2018 12:11:50 gfortran -fpic -g -O2 -fstack-protector-strong -c tvpack.f -o tvpack.o build 03-Oct-2018 12:11:50 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o mvtnorm.so C_FORTRAN_interface.o miwa.o mvt.o mvtnorm-init.o tvpack.o -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR build 03-Oct-2018 12:11:50 installing to /usr/local/lib/R/site-library/mvtnorm/libs build 03-Oct-2018 12:11:50 ** R build 03-Oct-2018 12:11:50 ** inst build 03-Oct-2018 12:11:50 ** preparing package for lazy loading build 03-Oct-2018 12:11:50 ** help build 03-Oct-2018 12:11:50 *** installing help indices build 03-Oct-2018 12:11:50 ** building package indices build 03-Oct-2018 12:11:50 ** installing vignettes build 03-Oct-2018 12:11:50 ** testing if installed package can be loaded build 03-Oct-2018 12:11:50 * DONE (mvtnorm) build 03-Oct-2018 12:11:51 * installing *source* package 'gdtools' ... build 03-Oct-2018 12:11:51 ** package 'gdtools' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:11:51 Found pkg-config cflags and libs! build 03-Oct-2018 12:11:51 Using PKG_CFLAGS=-I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 build 03-Oct-2018 12:11:51 Using PKG_LIBS=-lcairo build 03-Oct-2018 12:11:51 ** libs build 03-Oct-2018 12:11:51 g++ -I/usr/share/R/include -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../inst/include/ -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c CairoContext.cpp -o CairoContext.o build 03-Oct-2018 12:11:54 g++ -I/usr/share/R/include -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../inst/include/ -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o build 03-Oct-2018 12:11:58 g++ -I/usr/share/R/include -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../inst/include/ -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c font_metrics.cpp -o font_metrics.o build 03-Oct-2018 12:12:01 g++ -I/usr/share/R/include -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../inst/include/ -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gdtools.cpp -o gdtools.o build 03-Oct-2018 12:12:03 g++ -I/usr/share/R/include -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../inst/include/ -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c raster_to_base64.cpp -o raster_to_base64.o build 03-Oct-2018 12:12:07 g++ -I/usr/share/R/include -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../inst/include/ -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sys_fonts.cpp -o sys_fonts.o build 03-Oct-2018 12:12:11 g++ -I/usr/share/R/include -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../inst/include/ -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c versions.cpp -o versions.o build 03-Oct-2018 12:12:13 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o gdtools.so CairoContext.o RcppExports.o font_metrics.o gdtools.o raster_to_base64.o sys_fonts.o versions.o -lcairo -L/usr/lib/R/lib -lR build 03-Oct-2018 12:12:13 installing to /usr/local/lib/R/site-library/gdtools/libs build 03-Oct-2018 12:12:13 ** R build 03-Oct-2018 12:12:13 ** inst build 03-Oct-2018 12:12:13 ** preparing package for lazy loading build 03-Oct-2018 12:12:14 ** help build 03-Oct-2018 12:12:14 *** installing help indices build 03-Oct-2018 12:12:14 ** building package indices build 03-Oct-2018 12:12:14 ** testing if installed package can be loaded build 03-Oct-2018 12:12:14 * DONE (gdtools) build 03-Oct-2018 12:12:14 * installing *source* package 'xml2' ... build 03-Oct-2018 12:12:14 ** package 'xml2' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:12:14 Found pkg-config cflags and libs! build 03-Oct-2018 12:12:14 Using PKG_CFLAGS=-I/usr/include/libxml2 build 03-Oct-2018 12:12:14 Using PKG_LIBS=-lxml2 build 03-Oct-2018 12:12:14 ** libs build 03-Oct-2018 12:12:14 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -I/usr/include/libxml2 -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o build 03-Oct-2018 12:12:19 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -I/usr/include/libxml2 -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c connection.cpp -o connection.o build 03-Oct-2018 12:12:23 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -I/usr/include/libxml2 -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xml2_doc.cpp -o xml2_doc.o build 03-Oct-2018 12:12:26 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -I/usr/include/libxml2 -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xml2_init.cpp -o xml2_init.o build 03-Oct-2018 12:12:28 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -I/usr/include/libxml2 -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xml2_namespace.cpp -o xml2_namespace.o build 03-Oct-2018 12:12:32 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -I/usr/include/libxml2 -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xml2_node.cpp -o xml2_node.o build 03-Oct-2018 12:12:36 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -I/usr/include/libxml2 -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xml2_output.cpp -o xml2_output.o build 03-Oct-2018 12:12:39 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -I/usr/include/libxml2 -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xml2_schema.cpp -o xml2_schema.o build 03-Oct-2018 12:12:42 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -I/usr/include/libxml2 -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xml2_url.cpp -o xml2_url.o build 03-Oct-2018 12:12:45 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -I/usr/include/libxml2 -I"/usr/local/lib/R/site-library/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xml2_xpath.cpp -o xml2_xpath.o build 03-Oct-2018 12:12:48 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o xml2.so RcppExports.o connection.o xml2_doc.o xml2_init.o xml2_namespace.o xml2_node.o xml2_output.o xml2_schema.o xml2_url.o xml2_xpath.o -lxml2 -L/usr/lib/R/lib -lR build 03-Oct-2018 12:12:49 installing to /usr/local/lib/R/site-library/xml2/libs build 03-Oct-2018 12:12:49 ** R build 03-Oct-2018 12:12:49 ** inst build 03-Oct-2018 12:12:49 ** preparing package for lazy loading build 03-Oct-2018 12:12:49 ** help build 03-Oct-2018 12:12:49 *** installing help indices build 03-Oct-2018 12:12:49 ** building package indices build 03-Oct-2018 12:12:49 ** installing vignettes build 03-Oct-2018 12:12:49 ** testing if installed package can be loaded build 03-Oct-2018 12:12:49 * DONE (xml2) build 03-Oct-2018 12:12:50 * installing *source* package 'SparseM' ... build 03-Oct-2018 12:12:50 ** package 'SparseM' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:12:50 ** libs build 03-Oct-2018 12:12:50 gfortran -fpic -g -O2 -fstack-protector-strong -c bckslv.f -o bckslv.o build 03-Oct-2018 12:12:50 gfortran -fpic -g -O2 -fstack-protector-strong -c chol.f -o chol.o build 03-Oct-2018 12:12:50 gfortran -fpic -g -O2 -fstack-protector-strong -c chol2csr.f -o chol2csr.o build 03-Oct-2018 12:12:50 gfortran -fpic -g -O2 -fstack-protector-strong -c cholesky.f -o cholesky.o build 03-Oct-2018 12:12:51 gfortran -fpic -g -O2 -fstack-protector-strong -c csr.f -o csr.o build 03-Oct-2018 12:12:51 gfortran -fpic -g -O2 -fstack-protector-strong -c extract.f -o extract.o build 03-Oct-2018 12:12:51 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:12:51 gfortran -fpic -g -O2 -fstack-protector-strong -c sparskit.f -o sparskit.o build 03-Oct-2018 12:12:52 gfortran -fpic -g -O2 -fstack-protector-strong -c subscr.f -o subscr.o build 03-Oct-2018 12:12:52 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o SparseM.so bckslv.o chol.o chol2csr.o cholesky.o csr.o extract.o init.o sparskit.o subscr.o -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR build 03-Oct-2018 12:12:52 installing to /usr/local/lib/R/site-library/SparseM/libs build 03-Oct-2018 12:12:52 ** R build 03-Oct-2018 12:12:52 ** data build 03-Oct-2018 12:12:52 ** demo build 03-Oct-2018 12:12:52 ** inst build 03-Oct-2018 12:12:52 ** preparing package for lazy loading build 03-Oct-2018 12:12:52 Creating a generic function for 'as.matrix' from package 'base' in package 'SparseM' build 03-Oct-2018 12:12:52 Creating a generic function for 't' from package 'base' in package 'SparseM' build 03-Oct-2018 12:12:52 Creating a generic function for 'diff' from package 'base' in package 'SparseM' build 03-Oct-2018 12:12:52 Creating a generic function for 'diag' from package 'base' in package 'SparseM' build 03-Oct-2018 12:12:52 Creating a generic function for 'diag<-' from package 'base' in package 'SparseM' build 03-Oct-2018 12:12:52 Creating a generic function for 'determinant' from package 'base' in package 'SparseM' build 03-Oct-2018 12:12:52 Creating a generic function for 'norm' from package 'base' in package 'SparseM' build 03-Oct-2018 12:12:52 Creating a generic function for 'chol' from package 'base' in package 'SparseM' build 03-Oct-2018 12:12:52 Creating a new generic function for 'backsolve' in package 'SparseM' build 03-Oct-2018 12:12:52 Creating a generic function for 'forwardsolve' from package 'base' in package 'SparseM' build 03-Oct-2018 12:12:52 Creating a generic function for 'solve' from package 'base' in package 'SparseM' build 03-Oct-2018 12:12:52 Creating a generic function for 'model.matrix' from package 'stats' in package 'SparseM' build 03-Oct-2018 12:12:52 Creating a generic function for 'model.response' from package 'stats' in package 'SparseM' build 03-Oct-2018 12:12:52 Creating a generic function for 'image' from package 'graphics' in package 'SparseM' build 03-Oct-2018 12:12:52 ** help build 03-Oct-2018 12:12:52 *** installing help indices build 03-Oct-2018 12:12:52 ** building package indices build 03-Oct-2018 12:12:52 ** installing vignettes build 03-Oct-2018 12:12:52 ** testing if installed package can be loaded build 03-Oct-2018 12:12:52 * DONE (SparseM) build 03-Oct-2018 12:12:53 * installing *source* package 'MatrixModels' ... build 03-Oct-2018 12:12:53 ** package 'MatrixModels' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:12:53 ** R build 03-Oct-2018 12:12:53 ** preparing package for lazy loading build 03-Oct-2018 12:12:54 Creating a generic function for 'resid' from package 'stats' in package 'MatrixModels' build 03-Oct-2018 12:12:54 Creating a generic function for 'fitted.values' from package 'stats' in package 'MatrixModels' build 03-Oct-2018 12:12:54 Creating a generic function for 'coefficients' from package 'stats' in package 'MatrixModels' build 03-Oct-2018 12:12:54 Creating a generic function for 'formula' from package 'stats' in package 'MatrixModels' build 03-Oct-2018 12:12:54 Creating a generic function for 'coef' from package 'stats' in package 'MatrixModels' build 03-Oct-2018 12:12:54 Creating a generic function for 'fitted' from package 'stats' in package 'MatrixModels' build 03-Oct-2018 12:12:54 Creating a generic function for 'residuals' from package 'stats' in package 'MatrixModels' build 03-Oct-2018 12:12:54 ** help build 03-Oct-2018 12:12:54 *** installing help indices build 03-Oct-2018 12:12:54 ** building package indices build 03-Oct-2018 12:12:54 ** testing if installed package can be loaded build 03-Oct-2018 12:12:55 * DONE (MatrixModels) build 03-Oct-2018 12:12:56 * installing *source* package 'intervals' ... build 03-Oct-2018 12:12:56 ** package 'intervals' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:12:56 ** libs build 03-Oct-2018 12:12:56 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Endpoint.cpp -o Endpoint.o build 03-Oct-2018 12:12:56 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plot_overlap.cpp -o plot_overlap.o build 03-Oct-2018 12:12:56 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c reduce.cpp -o reduce.o build 03-Oct-2018 12:12:57 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c which_nearest.cpp -o which_nearest.o build 03-Oct-2018 12:12:57 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o intervals.so Endpoint.o plot_overlap.o reduce.o which_nearest.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:12:57 installing to /usr/local/lib/R/site-library/intervals/libs build 03-Oct-2018 12:12:57 ** R build 03-Oct-2018 12:12:57 ** data build 03-Oct-2018 12:12:57 ** inst build 03-Oct-2018 12:12:57 ** preparing package for lazy loading build 03-Oct-2018 12:12:57 Creating a generic function for 'as.matrix' from package 'base' in package 'intervals' build 03-Oct-2018 12:12:58 Creating a generic function for 'plot' from package 'graphics' in package 'intervals' build 03-Oct-2018 12:12:58 Creating a generic function for 'split' from package 'base' in package 'intervals' build 03-Oct-2018 12:12:58 ** help build 03-Oct-2018 12:12:58 *** installing help indices build 03-Oct-2018 12:12:58 ** building package indices build 03-Oct-2018 12:12:58 ** installing vignettes build 03-Oct-2018 12:12:58 ** testing if installed package can be loaded build 03-Oct-2018 12:12:58 * DONE (intervals) build 03-Oct-2018 12:12:58 * installing *source* package 'bindr' ... build 03-Oct-2018 12:12:58 ** package 'bindr' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:12:58 ** R build 03-Oct-2018 12:12:58 ** preparing package for lazy loading build 03-Oct-2018 12:12:58 ** help build 03-Oct-2018 12:12:58 *** installing help indices build 03-Oct-2018 12:12:58 ** building package indices build 03-Oct-2018 12:12:58 ** testing if installed package can be loaded build 03-Oct-2018 12:12:59 * DONE (bindr) build 03-Oct-2018 12:12:59 * installing *source* package 'bit' ... build 03-Oct-2018 12:12:59 ** package 'bit' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:12:59 ** libs build 03-Oct-2018 12:12:59 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c attrutil.c -o attrutil.o build 03-Oct-2018 12:12:59 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bit.c -o bit.o build 03-Oct-2018 12:12:59 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c chunkutil.c -o chunkutil.o build 03-Oct-2018 12:12:59 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c clone.c -o clone.o build 03-Oct-2018 12:12:59 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rle.c -o rle.o build 03-Oct-2018 12:13:00 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o bit.so attrutil.o bit.o chunkutil.o clone.o rle.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:13:00 installing to /usr/local/lib/R/site-library/bit/libs build 03-Oct-2018 12:13:00 ** R build 03-Oct-2018 12:13:00 ** exec build 03-Oct-2018 12:13:00 ** inst build 03-Oct-2018 12:13:00 ** byte-compile and prepare package for lazy loading build 03-Oct-2018 12:13:00 ** help build 03-Oct-2018 12:13:00 *** installing help indices build 03-Oct-2018 12:13:01 ** building package indices build 03-Oct-2018 12:13:01 ** testing if installed package can be loaded build 03-Oct-2018 12:13:01 * DONE (bit) build 03-Oct-2018 12:13:01 * installing *source* package 'memoise' ... build 03-Oct-2018 12:13:01 ** package 'memoise' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:13:01 ** R build 03-Oct-2018 12:13:01 ** preparing package for lazy loading build 03-Oct-2018 12:13:01 ** help build 03-Oct-2018 12:13:01 *** installing help indices build 03-Oct-2018 12:13:01 ** building package indices build 03-Oct-2018 12:13:01 ** testing if installed package can be loaded build 03-Oct-2018 12:13:01 * DONE (memoise) build 03-Oct-2018 12:13:02 * installing *source* package 'dotCall64' ... build 03-Oct-2018 12:13:02 ** package 'dotCall64' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:13:02 ** libs build 03-Oct-2018 12:13:02 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -I../inst/include/ -DDOTCAL64_PRIVATE -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dotCall64.c -o dotCall64.o build 03-Oct-2018 12:13:02 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -I../inst/include/ -DDOTCAL64_PRIVATE -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dotCall64helpers.c -o dotCall64helpers.o build 03-Oct-2018 12:13:02 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -I../inst/include/ -DDOTCAL64_PRIVATE -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:13:02 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -I../inst/include/ -DDOTCAL64_PRIVATE -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c testfunctions_c.c -o testfunctions_c.o build 03-Oct-2018 12:13:02 gfortran -fpic -g -O2 -fstack-protector-strong -c testfunctions_f.f -o testfunctions_f.o build 03-Oct-2018 12:13:02 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o dotCall64.so dotCall64.o dotCall64helpers.o init.o testfunctions_c.o testfunctions_f.o -fopenmp -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR build 03-Oct-2018 12:13:02 installing to /usr/local/lib/R/site-library/dotCall64/libs build 03-Oct-2018 12:13:02 ** R build 03-Oct-2018 12:13:02 ** inst build 03-Oct-2018 12:13:02 ** preparing package for lazy loading build 03-Oct-2018 12:13:02 ** help build 03-Oct-2018 12:13:02 *** installing help indices build 03-Oct-2018 12:13:02 ** building package indices build 03-Oct-2018 12:13:02 ** testing if installed package can be loaded build 03-Oct-2018 12:13:02 * DONE (dotCall64) build 03-Oct-2018 12:13:03 * installing *source* package 'png' ... build 03-Oct-2018 12:13:03 ** package 'png' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:13:03 ** libs build 03-Oct-2018 12:13:03 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG `libpng-config --cflags` -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c read.c -o read.o build 03-Oct-2018 12:13:03 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG `libpng-config --cflags` -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c write.c -o write.o build 03-Oct-2018 12:13:03 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o png.so read.o write.o -lpng12 -lz -lm -L/usr/lib/R/lib -lR build 03-Oct-2018 12:13:03 installing to /usr/local/lib/R/site-library/png/libs build 03-Oct-2018 12:13:03 ** R build 03-Oct-2018 12:13:03 ** inst build 03-Oct-2018 12:13:03 ** preparing package for lazy loading build 03-Oct-2018 12:13:03 ** help build 03-Oct-2018 12:13:03 *** installing help indices build 03-Oct-2018 12:13:03 ** building package indices build 03-Oct-2018 12:13:03 ** testing if installed package can be loaded build 03-Oct-2018 12:13:03 * DONE (png) build 03-Oct-2018 12:13:04 * installing *source* package 'maps' ... build 03-Oct-2018 12:13:04 ** package 'maps' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:13:04 checking for gawk... no build 03-Oct-2018 12:13:04 checking for mawk... mawk build 03-Oct-2018 12:13:04 configure: creating ./config.status build 03-Oct-2018 12:13:04 config.status: creating src/Makefile build 03-Oct-2018 12:13:04 ** libs build 03-Oct-2018 12:13:04 ** arch - build 03-Oct-2018 12:13:04 make -f "/usr/lib/R/etc/Makeconf" -f Makefile init.o mapclip.o mapget.o smooth.o thin.o build 03-Oct-2018 12:13:04 make[1]: Entering directory '/tmp/RtmpSk4d4f/R.INSTALLb8d301c1df2/maps/src' build 03-Oct-2018 12:13:04 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:13:04 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mapclip.c -o mapclip.o build 03-Oct-2018 12:13:04 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mapget.c -o mapget.o build 03-Oct-2018 12:13:05 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c smooth.c -o smooth.o build 03-Oct-2018 12:13:05 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c thin.c -o thin.o build 03-Oct-2018 12:13:05 make[1]: Leaving directory '/tmp/RtmpSk4d4f/R.INSTALLb8d301c1df2/maps/src' build 03-Oct-2018 12:13:05 "/usr/lib/R/bin/R" CMD SHLIB -o maps.so init.o mapclip.o mapget.o smooth.o thin.o build 03-Oct-2018 12:13:05 make[1]: Entering directory '/tmp/RtmpSk4d4f/R.INSTALLb8d301c1df2/maps/src' build 03-Oct-2018 12:13:05 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o maps.so init.o mapclip.o mapget.o smooth.o thin.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:13:05 make[1]: Leaving directory '/tmp/RtmpSk4d4f/R.INSTALLb8d301c1df2/maps/src' build 03-Oct-2018 12:13:05 make -f "/usr/lib/R/etc/Makeconf" -f Makefile Gmake build 03-Oct-2018 12:13:05 make[1]: Entering directory '/tmp/RtmpSk4d4f/R.INSTALLb8d301c1df2/maps/src' build 03-Oct-2018 12:13:05 gcc -std=gnu99 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wl,-Bsymbolic-functions -Wl,-z,relro Gmake.c -o Gmake build 03-Oct-2018 12:13:05 make[1]: Leaving directory '/tmp/RtmpSk4d4f/R.INSTALLb8d301c1df2/maps/src' build 03-Oct-2018 12:13:05 make -f "/usr/lib/R/etc/Makeconf" -f Makefile Lmake build 03-Oct-2018 12:13:05 make[1]: Entering directory '/tmp/RtmpSk4d4f/R.INSTALLb8d301c1df2/maps/src' build 03-Oct-2018 12:13:05 gcc -std=gnu99 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wl,-Bsymbolic-functions -Wl,-z,relro Lmake.c -o Lmake build 03-Oct-2018 12:13:05 make[1]: Leaving directory '/tmp/RtmpSk4d4f/R.INSTALLb8d301c1df2/maps/src' build 03-Oct-2018 12:13:05 make -f "/usr/lib/R/etc/Makeconf" -f Makefile world2.line build 03-Oct-2018 12:13:05 make[1]: Entering directory '/tmp/RtmpSk4d4f/R.INSTALLb8d301c1df2/maps/src' build 03-Oct-2018 12:13:05 Converting world to world2 build 03-Oct-2018 12:13:05 mawk -f ./convert.awk < world.line > world2.line build 03-Oct-2018 12:13:05 Creating legacy world2 database build 03-Oct-2018 12:13:05 mawk -f ./legacy_convert.awk < legacy_world.line > legacy_world2.line build 03-Oct-2018 12:13:05 make[1]: Leaving directory '/tmp/RtmpSk4d4f/R.INSTALLb8d301c1df2/maps/src' build 03-Oct-2018 12:13:05 make -f "/usr/lib/R/etc/Makeconf" -f Makefile county.L state.L usa.L nz.L world.L world2.L italy.L france.L state.vbm.L state.carto.L legacy_world.L legacy_world2.L lakes.L build 03-Oct-2018 12:13:05 make[1]: Entering directory '/tmp/RtmpSk4d4f/R.INSTALLb8d301c1df2/maps/src' build 03-Oct-2018 12:13:05 ./Lmake 0 s b county.line county.linestats ../inst/mapdata/county.L build 03-Oct-2018 12:13:05 ./Lmake 0 s b state.line state.linestats ../inst/mapdata/state.L build 03-Oct-2018 12:13:05 ./Lmake 0 s b usa.line usa.linestats ../inst/mapdata/usa.L build 03-Oct-2018 12:13:05 ./Lmake 0 s b nz.line nz.linestats ../inst/mapdata/nz.L build 03-Oct-2018 12:13:05 ./Lmake 0 s b world.line world.linestats ../inst/mapdata/world.L build 03-Oct-2018 12:13:06 ./Lmake 0 s b world2.line world2.linestats ../inst/mapdata/world2.L build 03-Oct-2018 12:13:06 ./Lmake 0 s b italy.line italy.linestats ../inst/mapdata/italy.L build 03-Oct-2018 12:13:06 ./Lmake 0 s b france.line france.linestats ../inst/mapdata/france.L build 03-Oct-2018 12:13:06 ./Lmake 0 p b state.vbm.line state.vbm.linestats ../inst/mapdata/state.vbm.L build 03-Oct-2018 12:13:06 ./Lmake 0 p b state.carto.line state.carto.linestats ../inst/mapdata/state.carto.L build 03-Oct-2018 12:13:06 ./Lmake 0 s b legacy_world.line legacy_world.linestats ../inst/mapdata/legacy_world.L build 03-Oct-2018 12:13:06 ./Lmake 0 s b legacy_world2.line legacy_world2.linestats ../inst/mapdata/legacy_world2.L build 03-Oct-2018 12:13:06 ./Lmake 0 s b lakes.line lakes.linestats ../inst/mapdata/lakes.L build 03-Oct-2018 12:13:06 make[1]: Leaving directory '/tmp/RtmpSk4d4f/R.INSTALLb8d301c1df2/maps/src' build 03-Oct-2018 12:13:06 make -f "/usr/lib/R/etc/Makeconf" -f Makefile county.G state.G usa.G nz.G world.G world2.G italy.G france.G state.vbm.G state.carto.G legacy_world.G legacy_world2.G lakes.G build 03-Oct-2018 12:13:06 make[1]: Entering directory '/tmp/RtmpSk4d4f/R.INSTALLb8d301c1df2/maps/src' build 03-Oct-2018 12:13:06 ./Gmake b county.gon county.gonstats ../inst/mapdata/county.G ../inst/mapdata/county.L build 03-Oct-2018 12:13:06 ./Gmake b state.gon state.gonstats ../inst/mapdata/state.G ../inst/mapdata/state.L build 03-Oct-2018 12:13:06 ./Gmake b usa.gon usa.gonstats ../inst/mapdata/usa.G ../inst/mapdata/usa.L build 03-Oct-2018 12:13:06 ./Gmake b nz.gon nz.gonstats ../inst/mapdata/nz.G ../inst/mapdata/nz.L build 03-Oct-2018 12:13:06 ./Gmake b world.gon world.gonstats ../inst/mapdata/world.G ../inst/mapdata/world.L build 03-Oct-2018 12:13:06 ./Gmake b world2.gon world2.gonstats ../inst/mapdata/world2.G ../inst/mapdata/world2.L build 03-Oct-2018 12:13:06 ./Gmake b italy.gon italy.gonstats ../inst/mapdata/italy.G ../inst/mapdata/italy.L build 03-Oct-2018 12:13:06 ./Gmake b france.gon france.gonstats ../inst/mapdata/france.G ../inst/mapdata/france.L build 03-Oct-2018 12:13:06 ./Gmake b state.vbm.gon state.vbm.gonstats ../inst/mapdata/state.vbm.G ../inst/mapdata/state.vbm.L build 03-Oct-2018 12:13:06 ./Gmake b state.carto.gon state.carto.gonstats ../inst/mapdata/state.carto.G ../inst/mapdata/state.carto.L build 03-Oct-2018 12:13:06 ./Gmake b legacy_world.gon legacy_world.gonstats ../inst/mapdata/legacy_world.G ../inst/mapdata/legacy_world.L build 03-Oct-2018 12:13:06 ./Gmake b legacy_world2.gon legacy_world2.gonstats ../inst/mapdata/legacy_world2.G ../inst/mapdata/legacy_world2.L build 03-Oct-2018 12:13:06 ./Gmake b lakes.gon lakes.gonstats ../inst/mapdata/lakes.G ../inst/mapdata/lakes.L build 03-Oct-2018 12:13:06 make[1]: Leaving directory '/tmp/RtmpSk4d4f/R.INSTALLb8d301c1df2/maps/src' build 03-Oct-2018 12:13:06 make -f "/usr/lib/R/etc/Makeconf" -f Makefile county.N state.N usa.N nz.N world.N world2.N italy.N france.N state.vbm.N state.carto.N legacy_world.N legacy_world2.N lakes.N build 03-Oct-2018 12:13:06 make[1]: Entering directory '/tmp/RtmpSk4d4f/R.INSTALLb8d301c1df2/maps/src' build 03-Oct-2018 12:13:06 make[1]: Leaving directory '/tmp/RtmpSk4d4f/R.INSTALLb8d301c1df2/maps/src' build 03-Oct-2018 12:13:06 installing to /usr/local/lib/R/site-library/maps/libs build 03-Oct-2018 12:13:06 ** R build 03-Oct-2018 12:13:06 ** data build 03-Oct-2018 12:13:06 *** moving datasets to lazyload DB build 03-Oct-2018 12:13:06 ** inst build 03-Oct-2018 12:13:06 ** preparing package for lazy loading build 03-Oct-2018 12:13:06 ** help build 03-Oct-2018 12:13:06 *** installing help indices build 03-Oct-2018 12:13:06 ** building package indices build 03-Oct-2018 12:13:07 ** testing if installed package can be loaded build 03-Oct-2018 12:13:07 * DONE (maps) build 03-Oct-2018 12:13:07 * installing *source* package 'testit' ... build 03-Oct-2018 12:13:07 ** package 'testit' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:13:07 ** R build 03-Oct-2018 12:13:07 ** inst build 03-Oct-2018 12:13:07 ** preparing package for lazy loading build 03-Oct-2018 12:13:07 ** help build 03-Oct-2018 12:13:07 *** installing help indices build 03-Oct-2018 12:13:07 ** building package indices build 03-Oct-2018 12:13:07 ** testing if installed package can be loaded build 03-Oct-2018 12:13:07 * DONE (testit) build 03-Oct-2018 12:13:08 * installing *source* package 'RJSONIO' ... build 03-Oct-2018 12:13:08 ** package 'RJSONIO' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:13:08 Trying to find libjson.h header file build 03-Oct-2018 12:13:08 checking for gcc... gcc build 03-Oct-2018 12:13:08 checking whether the C compiler works... yes build 03-Oct-2018 12:13:08 checking for C compiler default output file name... a.out build 03-Oct-2018 12:13:08 checking for suffix of executables... build 03-Oct-2018 12:13:08 checking whether we are cross compiling... no build 03-Oct-2018 12:13:08 checking for suffix of object files... o build 03-Oct-2018 12:13:08 checking whether we are using the GNU C compiler... yes build 03-Oct-2018 12:13:08 checking whether gcc accepts -g... yes build 03-Oct-2018 12:13:08 checking for gcc option to accept ISO C89... none needed build 03-Oct-2018 12:13:08 USE_LOCAL = "" build 03-Oct-2018 12:13:08 Minor Version: 6 build 03-Oct-2018 12:13:08 Using local libjson code. Copying files from src/libjson/Source build 03-Oct-2018 12:13:08 /tmp/RtmparMA9b/R.INSTALLd2d731c7ae9/RJSONIO build 03-Oct-2018 12:13:08 JSONAllocator.cpp build 03-Oct-2018 12:13:08 JSONChildren.cpp build 03-Oct-2018 12:13:08 JSONDebug.cpp build 03-Oct-2018 12:13:08 JSONIterators.cpp build 03-Oct-2018 12:13:08 JSONMemory.cpp build 03-Oct-2018 12:13:08 JSONNode.cpp build 03-Oct-2018 12:13:08 JSONNode_Mutex.cpp build 03-Oct-2018 12:13:08 JSONPreparse.cpp build 03-Oct-2018 12:13:08 JSONStream.cpp build 03-Oct-2018 12:13:08 JSONValidator.cpp build 03-Oct-2018 12:13:08 JSONWorker.cpp build 03-Oct-2018 12:13:08 JSONWriter.cpp build 03-Oct-2018 12:13:08 internalJSONNode.cpp build 03-Oct-2018 12:13:08 libjson.cpp build 03-Oct-2018 12:13:08 configure: creating ./config.status build 03-Oct-2018 12:13:08 config.status: creating src/Makevars build 03-Oct-2018 12:13:08 config.status: creating cleanup build 03-Oct-2018 12:13:08 ** libs build 03-Oct-2018 12:13:08 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ConvertUTF.c -o ConvertUTF.o build 03-Oct-2018 12:13:08 g++ -I/usr/share/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c JSONAllocator.cpp -o JSONAllocator.o build 03-Oct-2018 12:13:08 g++ -I/usr/share/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c JSONChildren.cpp -o JSONChildren.o build 03-Oct-2018 12:13:08 g++ -I/usr/share/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c JSONDebug.cpp -o JSONDebug.o build 03-Oct-2018 12:13:08 g++ -I/usr/share/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c JSONIterators.cpp -o JSONIterators.o build 03-Oct-2018 12:13:09 g++ -I/usr/share/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c JSONMemory.cpp -o JSONMemory.o build 03-Oct-2018 12:13:09 g++ -I/usr/share/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c JSONNode.cpp -o JSONNode.o build 03-Oct-2018 12:13:09 g++ -I/usr/share/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c JSONNode_Mutex.cpp -o JSONNode_Mutex.o build 03-Oct-2018 12:13:09 g++ -I/usr/share/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c JSONPreparse.cpp -o JSONPreparse.o build 03-Oct-2018 12:13:09 g++ -I/usr/share/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c JSONStream.cpp -o JSONStream.o build 03-Oct-2018 12:13:10 g++ -I/usr/share/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c JSONValidator.cpp -o JSONValidator.o build 03-Oct-2018 12:13:10 g++ -I/usr/share/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c JSONWorker.cpp -o JSONWorker.o build 03-Oct-2018 12:13:10 g++ -I/usr/share/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c JSONWriter.cpp -o JSONWriter.o build 03-Oct-2018 12:13:11 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c JSON_parser.c -o JSON_parser.o build 03-Oct-2018 12:13:11 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RJSON.c -o RJSON.o build 03-Oct-2018 12:13:11 g++ -I/usr/share/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c internalJSONNode.cpp -o internalJSONNode.o build 03-Oct-2018 12:13:12 g++ -I/usr/share/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libjson.cpp -o libjson.o build 03-Oct-2018 12:13:12 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rlibjson.c -o rlibjson.o build 03-Oct-2018 12:13:12 rlibjson.c: In function 'R_fromJSON': build 03-Oct-2018 12:13:12 rlibjson.c:49:9: note: #pragma message: activate the debug_callback build 03-Oct-2018 12:13:12 #pragma message("activate the debug_callback") build 03-Oct-2018 12:13:12 ^ build 03-Oct-2018 12:13:12 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rparser.c -o rparser.o build 03-Oct-2018 12:13:13 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o RJSONIO.so ConvertUTF.o JSONAllocator.o JSONChildren.o JSONDebug.o JSONIterators.o JSONMemory.o JSONNode.o JSONNode_Mutex.o JSONPreparse.o JSONStream.o JSONValidator.o JSONWorker.o JSONWriter.o JSON_parser.o RJSON.o internalJSONNode.o libjson.o rlibjson.o rparser.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:13:13 installing to /usr/local/lib/R/site-library/RJSONIO/libs build 03-Oct-2018 12:13:13 ** R build 03-Oct-2018 12:13:13 ** inst build 03-Oct-2018 12:13:13 ** preparing package for lazy loading build 03-Oct-2018 12:13:13 ** help build 03-Oct-2018 12:13:13 *** installing help indices build 03-Oct-2018 12:13:13 ** building package indices build 03-Oct-2018 12:13:13 ** testing if installed package can be loaded build 03-Oct-2018 12:13:13 * DONE (RJSONIO) build 03-Oct-2018 12:13:13 * installing *source* package 'purrr' ... build 03-Oct-2018 12:13:13 ** package 'purrr' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:13:13 ** libs build 03-Oct-2018 12:13:13 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c backports.c -o backports.o build 03-Oct-2018 12:13:13 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coerce.c -o coerce.o build 03-Oct-2018 12:13:14 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c extract.c -o extract.o build 03-Oct-2018 12:13:14 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c flatten.c -o flatten.o build 03-Oct-2018 12:13:14 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:13:14 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c map.c -o map.o build 03-Oct-2018 12:13:14 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transpose.c -o transpose.o build 03-Oct-2018 12:13:14 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o purrr.so backports.o coerce.o extract.o flatten.o init.o map.o transpose.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:13:14 installing to /usr/local/lib/R/site-library/purrr/libs build 03-Oct-2018 12:13:14 ** R build 03-Oct-2018 12:13:14 ** inst build 03-Oct-2018 12:13:14 ** preparing package for lazy loading build 03-Oct-2018 12:13:14 ** help build 03-Oct-2018 12:13:14 *** installing help indices build 03-Oct-2018 12:13:14 *** copying figures build 03-Oct-2018 12:13:14 ** building package indices build 03-Oct-2018 12:13:14 ** installing vignettes build 03-Oct-2018 12:13:14 ** testing if installed package can be loaded build 03-Oct-2018 12:13:15 * DONE (purrr) build 03-Oct-2018 12:13:15 * installing *source* package 'ggplot2movies' ... build 03-Oct-2018 12:13:15 ** package 'ggplot2movies' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:13:15 ** R build 03-Oct-2018 12:13:15 ** data build 03-Oct-2018 12:13:15 *** moving datasets to lazyload DB build 03-Oct-2018 12:13:16 ** preparing package for lazy loading build 03-Oct-2018 12:13:16 ** help build 03-Oct-2018 12:13:16 *** installing help indices build 03-Oct-2018 12:13:16 ** building package indices build 03-Oct-2018 12:13:16 ** testing if installed package can be loaded build 03-Oct-2018 12:13:16 * DONE (ggplot2movies) build 03-Oct-2018 12:13:17 * installing *source* package 'hexbin' ... build 03-Oct-2018 12:13:17 ** package 'hexbin' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:13:17 ** libs build 03-Oct-2018 12:13:17 gfortran -fpic -g -O2 -fstack-protector-strong -c hbin.f -o hbin.o build 03-Oct-2018 12:13:17 gfortran -fpic -g -O2 -fstack-protector-strong -c hcell.f -o hcell.o build 03-Oct-2018 12:13:17 gfortran -fpic -g -O2 -fstack-protector-strong -c herode.f -o herode.o build 03-Oct-2018 12:13:17 gfortran -fpic -g -O2 -fstack-protector-strong -c hsm.f -o hsm.o build 03-Oct-2018 12:13:17 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c reg.c -o reg.o build 03-Oct-2018 12:13:17 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o hexbin.so hbin.o hcell.o herode.o hsm.o reg.o -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR build 03-Oct-2018 12:13:17 installing to /usr/local/lib/R/site-library/hexbin/libs build 03-Oct-2018 12:13:17 ** R build 03-Oct-2018 12:13:17 ** data build 03-Oct-2018 12:13:17 ** inst build 03-Oct-2018 12:13:17 ** preparing package for lazy loading build 03-Oct-2018 12:13:17 Creating a generic function for 'plot' from package 'graphics' in package 'hexbin' build 03-Oct-2018 12:13:17 Creating a generic function for 'summary' from package 'base' in package 'hexbin' build 03-Oct-2018 12:13:17 ** help build 03-Oct-2018 12:13:17 *** installing help indices build 03-Oct-2018 12:13:17 ** building package indices build 03-Oct-2018 12:13:18 ** installing vignettes build 03-Oct-2018 12:13:18 ** testing if installed package can be loaded build 03-Oct-2018 12:13:18 * DONE (hexbin) build 03-Oct-2018 12:13:18 * installing *source* package 'zoo' ... build 03-Oct-2018 12:13:18 ** package 'zoo' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:13:18 ** libs build 03-Oct-2018 12:13:18 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coredata.c -o coredata.o build 03-Oct-2018 12:13:18 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:13:18 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lag.c -o lag.o build 03-Oct-2018 12:13:18 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o zoo.so coredata.o init.o lag.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:13:18 installing to /usr/local/lib/R/site-library/zoo/libs build 03-Oct-2018 12:13:18 ** R build 03-Oct-2018 12:13:18 ** demo build 03-Oct-2018 12:13:18 ** inst build 03-Oct-2018 12:13:18 ** preparing package for lazy loading build 03-Oct-2018 12:13:19 ** help build 03-Oct-2018 12:13:19 *** installing help indices build 03-Oct-2018 12:13:19 ** building package indices build 03-Oct-2018 12:13:19 ** installing vignettes build 03-Oct-2018 12:13:19 ** testing if installed package can be loaded build 03-Oct-2018 12:13:19 * DONE (zoo) build 03-Oct-2018 12:13:19 * installing *source* package 'FNN' ... build 03-Oct-2018 12:13:19 ** package 'FNN' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:13:20 ** libs build 03-Oct-2018 12:13:20 g++ -I/usr/share/R/include -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ANN.cpp -o ANN.o build 03-Oct-2018 12:13:20 g++ -I/usr/share/R/include -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c KNN_ANN.cpp -o KNN_ANN.o build 03-Oct-2018 12:13:20 g++ -I/usr/share/R/include -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c KNN_correlation_distance.cpp -o KNN_correlation_distance.o build 03-Oct-2018 12:13:20 g++ -I/usr/share/R/include -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c KNN_cover_test.cpp -o KNN_cover_test.o build 03-Oct-2018 12:13:20 g++ -I/usr/share/R/include -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c KNN_cover_tree.cpp -o KNN_cover_tree.o build 03-Oct-2018 12:13:21 g++ -I/usr/share/R/include -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c KNN_mutual_information.cpp -o KNN_mutual_information.o build 03-Oct-2018 12:13:21 g++ -I/usr/share/R/include -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bd_fix_rad_search.cpp -o bd_fix_rad_search.o build 03-Oct-2018 12:13:21 g++ -I/usr/share/R/include -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bd_pr_search.cpp -o bd_pr_search.o build 03-Oct-2018 12:13:22 g++ -I/usr/share/R/include -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bd_search.cpp -o bd_search.o build 03-Oct-2018 12:13:22 g++ -I/usr/share/R/include -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bd_tree.cpp -o bd_tree.o build 03-Oct-2018 12:13:22 g++ -I/usr/share/R/include -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c brute.cpp -o brute.o build 03-Oct-2018 12:13:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init_FNN.c -o init_FNN.o build 03-Oct-2018 12:13:22 g++ -I/usr/share/R/include -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c kd_dump.cpp -o kd_dump.o build 03-Oct-2018 12:13:23 g++ -I/usr/share/R/include -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c kd_fix_rad_search.cpp -o kd_fix_rad_search.o build 03-Oct-2018 12:13:23 g++ -I/usr/share/R/include -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c kd_pr_search.cpp -o kd_pr_search.o build 03-Oct-2018 12:13:23 g++ -I/usr/share/R/include -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c kd_search.cpp -o kd_search.o build 03-Oct-2018 12:13:23 g++ -I/usr/share/R/include -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c kd_split.cpp -o kd_split.o build 03-Oct-2018 12:13:24 g++ -I/usr/share/R/include -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c kd_tree.cpp -o kd_tree.o build 03-Oct-2018 12:13:24 g++ -I/usr/share/R/include -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c kd_util.cpp -o kd_util.o build 03-Oct-2018 12:13:24 g++ -I/usr/share/R/include -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c label_point.cpp -o label_point.o build 03-Oct-2018 12:13:24 g++ -I/usr/share/R/include -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c perf.cpp -o perf.o build 03-Oct-2018 12:13:24 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o FNN.so ANN.o KNN_ANN.o KNN_correlation_distance.o KNN_cover_test.o KNN_cover_tree.o KNN_mutual_information.o bd_fix_rad_search.o bd_pr_search.o bd_search.o bd_tree.o brute.o init_FNN.o kd_dump.o kd_fix_rad_search.o kd_pr_search.o kd_search.o kd_split.o kd_tree.o kd_util.o label_point.o perf.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:13:25 rm -f *.o core build 03-Oct-2018 12:13:25 installing to /usr/local/lib/R/site-library/FNN/libs build 03-Oct-2018 12:13:25 ** R build 03-Oct-2018 12:13:25 ** inst build 03-Oct-2018 12:13:25 ** preparing package for lazy loading build 03-Oct-2018 12:13:25 ** help build 03-Oct-2018 12:13:25 *** installing help indices build 03-Oct-2018 12:13:25 ** building package indices build 03-Oct-2018 12:13:25 ** testing if installed package can be loaded build 03-Oct-2018 12:13:25 * DONE (FNN) build 03-Oct-2018 12:13:25 * installing *source* package 'pkgconfig' ... build 03-Oct-2018 12:13:25 ** package 'pkgconfig' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:13:25 ** R build 03-Oct-2018 12:13:25 ** inst build 03-Oct-2018 12:13:25 ** preparing package for lazy loading build 03-Oct-2018 12:13:25 ** help build 03-Oct-2018 12:13:25 *** installing help indices build 03-Oct-2018 12:13:25 ** building package indices build 03-Oct-2018 12:13:25 ** testing if installed package can be loaded build 03-Oct-2018 12:13:25 * DONE (pkgconfig) build 03-Oct-2018 12:13:26 * installing *source* package 'plogr' ... build 03-Oct-2018 12:13:26 ** package 'plogr' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:13:26 ** R build 03-Oct-2018 12:13:26 ** inst build 03-Oct-2018 12:13:26 ** preparing package for lazy loading build 03-Oct-2018 12:13:26 ** help build 03-Oct-2018 12:13:26 *** installing help indices build 03-Oct-2018 12:13:26 ** building package indices build 03-Oct-2018 12:13:26 ** testing if installed package can be loaded build 03-Oct-2018 12:13:26 * DONE (plogr) build 03-Oct-2018 12:13:26 * installing *source* package 'DBI' ... build 03-Oct-2018 12:13:26 ** package 'DBI' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:13:26 ** R build 03-Oct-2018 12:13:26 ** inst build 03-Oct-2018 12:13:26 ** preparing package for lazy loading build 03-Oct-2018 12:13:26 ** help build 03-Oct-2018 12:13:27 *** installing help indices build 03-Oct-2018 12:13:27 ** building package indices build 03-Oct-2018 12:13:27 ** installing vignettes build 03-Oct-2018 12:13:27 ** testing if installed package can be loaded build 03-Oct-2018 12:13:27 * DONE (DBI) build 03-Oct-2018 12:13:28 * installing *source* package 'mgcv' ... build 03-Oct-2018 12:13:28 ** package 'mgcv' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:13:28 ** libs build 03-Oct-2018 12:13:28 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coxph.c -o coxph.o build 03-Oct-2018 12:13:28 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c discrete.c -o discrete.o build 03-Oct-2018 12:13:28 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gdi.c -o gdi.o build 03-Oct-2018 12:13:30 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:13:30 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c magic.c -o magic.o build 03-Oct-2018 12:13:31 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mat.c -o mat.o build 03-Oct-2018 12:13:33 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c matrix.c -o matrix.o build 03-Oct-2018 12:13:33 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mgcv.c -o mgcv.o build 03-Oct-2018 12:13:33 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c misc.c -o misc.o build 03-Oct-2018 12:13:34 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mvn.c -o mvn.o build 03-Oct-2018 12:13:34 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qp.c -o qp.o build 03-Oct-2018 12:13:34 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c soap.c -o soap.o build 03-Oct-2018 12:13:34 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sparse-smooth.c -o sparse-smooth.o build 03-Oct-2018 12:13:35 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tprs.c -o tprs.o build 03-Oct-2018 12:13:36 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o mgcv.so coxph.o discrete.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o qp.o soap.o sparse-smooth.o tprs.o -llapack -lblas -lgfortran -lm -lquadmath -fopenmp -L/usr/lib/R/lib -lR build 03-Oct-2018 12:13:36 installing to /usr/local/lib/R/site-library/mgcv/libs build 03-Oct-2018 12:13:36 ** R build 03-Oct-2018 12:13:36 ** data build 03-Oct-2018 12:13:36 ** inst build 03-Oct-2018 12:13:36 ** byte-compile and prepare package for lazy loading build 03-Oct-2018 12:13:57 ** help build 03-Oct-2018 12:13:58 *** installing help indices build 03-Oct-2018 12:13:59 ** building package indices build 03-Oct-2018 12:13:59 ** testing if installed package can be loaded build 03-Oct-2018 12:14:00 * DONE (mgcv) build 03-Oct-2018 12:14:00 * installing *source* package 'microbenchmark' ... build 03-Oct-2018 12:14:00 ** package 'microbenchmark' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:14:01 checking for gcc... gcc -std=gnu99 build 03-Oct-2018 12:14:01 checking whether the C compiler works... yes build 03-Oct-2018 12:14:01 checking for C compiler default output file name... a.out build 03-Oct-2018 12:14:01 checking for suffix of executables... build 03-Oct-2018 12:14:01 checking whether we are cross compiling... no build 03-Oct-2018 12:14:01 checking for suffix of object files... o build 03-Oct-2018 12:14:01 checking whether we are using the GNU C compiler... yes build 03-Oct-2018 12:14:01 checking whether gcc -std=gnu99 accepts -g... yes build 03-Oct-2018 12:14:01 checking for gcc -std=gnu99 option to accept ISO C89... none needed build 03-Oct-2018 12:14:01 checking how to run the C preprocessor... gcc -std=gnu99 -E build 03-Oct-2018 12:14:01 checking for grep that handles long lines and -e... /bin/grep build 03-Oct-2018 12:14:01 checking for egrep... /bin/grep -E build 03-Oct-2018 12:14:01 checking for ANSI C header files... yes build 03-Oct-2018 12:14:01 checking for sys/types.h... yes build 03-Oct-2018 12:14:01 checking for sys/stat.h... yes build 03-Oct-2018 12:14:01 checking for stdlib.h... yes build 03-Oct-2018 12:14:01 checking for string.h... yes build 03-Oct-2018 12:14:01 checking for memory.h... yes build 03-Oct-2018 12:14:01 checking for strings.h... yes build 03-Oct-2018 12:14:01 checking for inttypes.h... yes build 03-Oct-2018 12:14:01 checking for stdint.h... yes build 03-Oct-2018 12:14:01 checking for unistd.h... yes build 03-Oct-2018 12:14:01 checking for stdint.h... (cached) yes build 03-Oct-2018 12:14:01 checking for stdlib.h... (cached) yes build 03-Oct-2018 12:14:01 checking sys/time.h usability... yes build 03-Oct-2018 12:14:01 checking sys/time.h presence... yes build 03-Oct-2018 12:14:01 checking for sys/time.h... yes build 03-Oct-2018 12:14:01 checking for uint64_t... yes build 03-Oct-2018 12:14:01 checking for error_at_line... yes build 03-Oct-2018 12:14:01 checking for mach_absolute_time... no build 03-Oct-2018 12:14:02 checking for library containing clock_gettime... none required build 03-Oct-2018 12:14:02 checking for best clockid_t to use with clock_gettime... CLOCK_MONOTONIC_RAW build 03-Oct-2018 12:14:02 configure: creating ./config.status build 03-Oct-2018 12:14:02 config.status: creating src/Makevars build 03-Oct-2018 12:14:02 config.status: creating src/config.h build 03-Oct-2018 12:14:02 ** libs build 03-Oct-2018 12:14:02 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_POSIX_C_SOURCE=200112L -DHAVE_CONFIG_H -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c do_nothing.c -o do_nothing.o build 03-Oct-2018 12:14:02 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_POSIX_C_SOURCE=200112L -DHAVE_CONFIG_H -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:14:02 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_POSIX_C_SOURCE=200112L -DHAVE_CONFIG_H -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nanotimer.c -o nanotimer.o build 03-Oct-2018 12:14:02 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o microbenchmark.so do_nothing.o init.o nanotimer.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:14:02 installing to /usr/local/lib/R/site-library/microbenchmark/libs build 03-Oct-2018 12:14:02 ** R build 03-Oct-2018 12:14:02 ** inst build 03-Oct-2018 12:14:02 ** byte-compile and prepare package for lazy loading build 03-Oct-2018 12:14:02 ** help build 03-Oct-2018 12:14:02 *** installing help indices build 03-Oct-2018 12:14:02 ** building package indices build 03-Oct-2018 12:14:02 ** testing if installed package can be loaded build 03-Oct-2018 12:14:02 * DONE (microbenchmark) build 03-Oct-2018 12:14:03 * installing *source* package 'nycflights13' ... build 03-Oct-2018 12:14:03 ** package 'nycflights13' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:14:03 ** R build 03-Oct-2018 12:14:03 ** data build 03-Oct-2018 12:14:03 *** moving datasets to lazyload DB build 03-Oct-2018 12:14:09 ** preparing package for lazy loading build 03-Oct-2018 12:14:09 ** help build 03-Oct-2018 12:14:09 *** installing help indices build 03-Oct-2018 12:14:09 ** building package indices build 03-Oct-2018 12:14:09 ** testing if installed package can be loaded build 03-Oct-2018 12:14:09 * DONE (nycflights13) build 03-Oct-2018 12:14:09 * installing *source* package 'proto' ... build 03-Oct-2018 12:14:09 ** package 'proto' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:14:09 ** R build 03-Oct-2018 12:14:09 ** demo build 03-Oct-2018 12:14:09 ** inst build 03-Oct-2018 12:14:09 ** preparing package for lazy loading build 03-Oct-2018 12:14:09 ** help build 03-Oct-2018 12:14:09 *** installing help indices build 03-Oct-2018 12:14:09 ** building package indices build 03-Oct-2018 12:14:09 ** installing vignettes build 03-Oct-2018 12:14:09 ** testing if installed package can be loaded build 03-Oct-2018 12:14:10 * DONE (proto) build 03-Oct-2018 12:14:10 * installing *source* package 'rjson' ... build 03-Oct-2018 12:14:10 ** package 'rjson' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:14:10 ** libs build 03-Oct-2018 12:14:10 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dump.cpp -o dump.o build 03-Oct-2018 12:14:10 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c parser.c -o parser.o build 03-Oct-2018 12:14:11 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c register.c -o register.o build 03-Oct-2018 12:14:11 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o rjson.so dump.o parser.o register.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:14:11 installing to /usr/local/lib/R/site-library/rjson/libs build 03-Oct-2018 12:14:11 ** R build 03-Oct-2018 12:14:11 ** inst build 03-Oct-2018 12:14:11 ** preparing package for lazy loading build 03-Oct-2018 12:14:11 ** help build 03-Oct-2018 12:14:11 *** installing help indices build 03-Oct-2018 12:14:11 ** building package indices build 03-Oct-2018 12:14:11 ** installing vignettes build 03-Oct-2018 12:14:11 ** testing if installed package can be loaded build 03-Oct-2018 12:14:11 * DONE (rjson) build 03-Oct-2018 12:14:11 * installing *source* package 'jpeg' ... build 03-Oct-2018 12:14:11 ** package 'jpeg' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:14:11 ** libs build 03-Oct-2018 12:14:11 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c read.c -o read.o build 03-Oct-2018 12:14:11 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c write.c -o write.o build 03-Oct-2018 12:14:11 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o jpeg.so read.o write.o -ljpeg -L/usr/lib/R/lib -lR build 03-Oct-2018 12:14:11 installing to /usr/local/lib/R/site-library/jpeg/libs build 03-Oct-2018 12:14:11 ** R build 03-Oct-2018 12:14:11 ** inst build 03-Oct-2018 12:14:11 ** preparing package for lazy loading build 03-Oct-2018 12:14:12 ** help build 03-Oct-2018 12:14:12 *** installing help indices build 03-Oct-2018 12:14:12 ** building package indices build 03-Oct-2018 12:14:12 ** testing if installed package can be loaded build 03-Oct-2018 12:14:12 * DONE (jpeg) build 03-Oct-2018 12:14:12 * installing *source* package 'rJava' ... build 03-Oct-2018 12:14:12 ** package 'rJava' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:14:12 checking for gcc... gcc -std=gnu99 build 03-Oct-2018 12:14:13 checking whether the C compiler works... yes build 03-Oct-2018 12:14:13 checking for C compiler default output file name... a.out build 03-Oct-2018 12:14:13 checking for suffix of executables... build 03-Oct-2018 12:14:13 checking whether we are cross compiling... no build 03-Oct-2018 12:14:13 checking for suffix of object files... o build 03-Oct-2018 12:14:13 checking whether we are using the GNU C compiler... yes build 03-Oct-2018 12:14:13 checking whether gcc -std=gnu99 accepts -g... yes build 03-Oct-2018 12:14:13 checking for gcc -std=gnu99 option to accept ISO C89... none needed build 03-Oct-2018 12:14:13 checking how to run the C preprocessor... gcc -std=gnu99 -E build 03-Oct-2018 12:14:13 checking for grep that handles long lines and -e... /bin/grep build 03-Oct-2018 12:14:13 checking for egrep... /bin/grep -E build 03-Oct-2018 12:14:13 checking for ANSI C header files... yes build 03-Oct-2018 12:14:13 checking for sys/wait.h that is POSIX.1 compatible... yes build 03-Oct-2018 12:14:13 checking for sys/types.h... yes build 03-Oct-2018 12:14:13 checking for sys/stat.h... yes build 03-Oct-2018 12:14:13 checking for stdlib.h... yes build 03-Oct-2018 12:14:13 checking for string.h... yes build 03-Oct-2018 12:14:13 checking for memory.h... yes build 03-Oct-2018 12:14:13 checking for strings.h... yes build 03-Oct-2018 12:14:13 checking for inttypes.h... yes build 03-Oct-2018 12:14:13 checking for stdint.h... yes build 03-Oct-2018 12:14:13 checking for unistd.h... yes build 03-Oct-2018 12:14:13 checking for string.h... (cached) yes build 03-Oct-2018 12:14:13 checking sys/time.h usability... yes build 03-Oct-2018 12:14:13 checking sys/time.h presence... yes build 03-Oct-2018 12:14:13 checking for sys/time.h... yes build 03-Oct-2018 12:14:13 checking for unistd.h... (cached) yes build 03-Oct-2018 12:14:13 checking for an ANSI C-conforming const... yes build 03-Oct-2018 12:14:13 checking whether time.h and sys/time.h may both be included... yes build 03-Oct-2018 12:14:13 configure: checking whether gcc -std=gnu99 supports static inline... build 03-Oct-2018 12:14:13 yes build 03-Oct-2018 12:14:13 checking whether setjmp.h is POSIX.1 compatible... yes build 03-Oct-2018 12:14:13 checking whether sigsetjmp is declared... yes build 03-Oct-2018 12:14:14 checking whether siglongjmp is declared... yes build 03-Oct-2018 12:14:14 checking Java support in R... present: build 03-Oct-2018 12:14:14 interpreter : '/usr/lib/jvm/default-java/jre/bin/java' build 03-Oct-2018 12:14:14 archiver : '' build 03-Oct-2018 12:14:14 compiler : '' build 03-Oct-2018 12:14:14 header prep.: '' build 03-Oct-2018 12:14:14 cpp flags : '' build 03-Oct-2018 12:14:14 java libs : '' build 03-Oct-2018 12:14:14 configure: error: Java Development Kit (JDK) is missing or not registered in R build 03-Oct-2018 12:14:14 Make sure R is configured with full Java support (including JDK). Run build 03-Oct-2018 12:14:14 R CMD javareconf build 03-Oct-2018 12:14:14 as root to add Java support to R. build 03-Oct-2018 12:14:14 build 03-Oct-2018 12:14:14 If you don't have root privileges, run build 03-Oct-2018 12:14:14 R CMD javareconf -e build 03-Oct-2018 12:14:14 to set all Java-related variables and then install rJava. build 03-Oct-2018 12:14:14 build 03-Oct-2018 12:14:14 ERROR: configuration failed for package 'rJava' build 03-Oct-2018 12:14:14 * removing '/usr/local/lib/R/site-library/rJava' build 03-Oct-2018 12:14:14 * installing *source* package 'XML' ... build 03-Oct-2018 12:14:14 ** package 'XML' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:14:15 checking for gcc... gcc build 03-Oct-2018 12:14:15 checking for C compiler default output file name... a.out build 03-Oct-2018 12:14:15 checking whether the C compiler works... yes build 03-Oct-2018 12:14:15 checking whether we are cross compiling... no build 03-Oct-2018 12:14:15 checking for suffix of executables... build 03-Oct-2018 12:14:15 checking for suffix of object files... o build 03-Oct-2018 12:14:15 checking whether we are using the GNU C compiler... yes build 03-Oct-2018 12:14:15 checking whether gcc accepts -g... yes build 03-Oct-2018 12:14:15 checking for gcc option to accept ISO C89... none needed build 03-Oct-2018 12:14:15 checking how to run the C preprocessor... gcc -E build 03-Oct-2018 12:14:15 checking for sed... /bin/sed build 03-Oct-2018 12:14:15 checking for pkg-config... /usr/bin/pkg-config build 03-Oct-2018 12:14:15 checking for xml2-config... /usr/bin/xml2-config build 03-Oct-2018 12:14:15 USE_XML2 = yes build 03-Oct-2018 12:14:15 SED_EXTENDED_ARG: -E build 03-Oct-2018 12:14:15 Minor 9, Patch 3 for 2.9.3 build 03-Oct-2018 12:14:15 Located parser file -I/usr/include/libxml2/parser.h build 03-Oct-2018 12:14:15 Checking for 1.8: -I/usr/include/libxml2 build 03-Oct-2018 12:14:15 Using libxml2.* build 03-Oct-2018 12:14:15 checking for gzopen in -lz... yes build 03-Oct-2018 12:14:15 checking for xmlParseFile in -lxml2... yes build 03-Oct-2018 12:14:15 checking for xmlHashSize in -lxml2... yes build 03-Oct-2018 12:14:15 Using built-in xmlHashSize build 03-Oct-2018 12:14:15 Checking DTD parsing (presence of externalSubset)... build 03-Oct-2018 12:14:15 checking for xmlHashSize in -lxml2... yes build 03-Oct-2018 12:14:15 Found xmlHashSize build 03-Oct-2018 12:14:16 checking for xmlOutputBufferCreateBuffer in -lxml2... yes build 03-Oct-2018 12:14:16 have xmlOutputBufferCreateBuffer() build 03-Oct-2018 12:14:16 checking for xmlDocDumpFormatMemoryEnc in -lxml2... yes build 03-Oct-2018 12:14:16 checking libxml/xmlversion.h usability... yes build 03-Oct-2018 12:14:16 checking libxml/xmlversion.h presence... yes build 03-Oct-2018 12:14:16 checking for libxml/xmlversion.h... yes build 03-Oct-2018 12:14:16 Expat: FALSE build 03-Oct-2018 12:14:16 Checking for return type of xmlHashScan element routine. build 03-Oct-2018 12:14:16 No return value for xmlHashScan build 03-Oct-2018 12:14:16 xmlNs has a context field build 03-Oct-2018 12:14:16 Checking for cetype_t enumeration build 03-Oct-2018 12:14:16 No cetype_t enumeration defined in R headers. build 03-Oct-2018 12:14:16 checking for xmlsec1-config... no build 03-Oct-2018 12:14:16 nodegc default build 03-Oct-2018 12:14:16 xml-debug default build 03-Oct-2018 12:14:16 Version has XML_WITH_ZLIB build 03-Oct-2018 12:14:16 Version has xmlHasFeature() build 03-Oct-2018 12:14:16 build 03-Oct-2018 12:14:16 **************************************** build 03-Oct-2018 12:14:16 Configuration information: build 03-Oct-2018 12:14:16 build 03-Oct-2018 12:14:16 Libxml settings build 03-Oct-2018 12:14:16 build 03-Oct-2018 12:14:16 libxml include directory: -I/usr/include/libxml2 build 03-Oct-2018 12:14:16 libxml library directory: -lxml2 -lz -lxml2 build 03-Oct-2018 12:14:16 libxml 2: -DLIBXML2=1 build 03-Oct-2018 12:14:16 build 03-Oct-2018 12:14:16 Compilation flags: -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 build 03-Oct-2018 12:14:16 Link flags: -lxml2 -lz -lxml2 build 03-Oct-2018 12:14:16 build 03-Oct-2018 12:14:16 **************************************** build 03-Oct-2018 12:14:16 configure: creating ./config.status build 03-Oct-2018 12:14:16 config.status: creating src/Makevars build 03-Oct-2018 12:14:16 config.status: creating R/supports.R build 03-Oct-2018 12:14:16 config.status: creating inst/scripts/RSXML.csh build 03-Oct-2018 12:14:16 config.status: creating inst/scripts/RSXML.bsh build 03-Oct-2018 12:14:16 ** libs build 03-Oct-2018 12:14:16 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c DocParse.c -o DocParse.o build 03-Oct-2018 12:14:17 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c EventParse.c -o EventParse.o build 03-Oct-2018 12:14:17 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ExpatParse.c -o ExpatParse.o build 03-Oct-2018 12:14:17 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c HTMLParse.c -o HTMLParse.o build 03-Oct-2018 12:14:17 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c NodeGC.c -o NodeGC.o build 03-Oct-2018 12:14:17 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RSDTD.c -o RSDTD.o build 03-Oct-2018 12:14:17 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RUtils.c -o RUtils.o build 03-Oct-2018 12:14:18 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rcatalog.c -o Rcatalog.o build 03-Oct-2018 12:14:18 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Utils.c -o Utils.o build 03-Oct-2018 12:14:18 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XMLEventParse.c -o XMLEventParse.o build 03-Oct-2018 12:14:18 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XMLHashTree.c -o XMLHashTree.o build 03-Oct-2018 12:14:18 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XMLTree.c -o XMLTree.o build 03-Oct-2018 12:14:19 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fixNS.c -o fixNS.o build 03-Oct-2018 12:14:19 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c libxmlFeatures.c -o libxmlFeatures.o build 03-Oct-2018 12:14:19 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c schema.c -o schema.o build 03-Oct-2018 12:14:19 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xmlsecurity.c -o xmlsecurity.o build 03-Oct-2018 12:14:19 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xpath.c -o xpath.o build 03-Oct-2018 12:14:19 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o XML.so DocParse.o EventParse.o ExpatParse.o HTMLParse.o NodeGC.o RSDTD.o RUtils.o Rcatalog.o Utils.o XMLEventParse.o XMLHashTree.o XMLTree.o fixNS.o libxmlFeatures.o schema.o xmlsecurity.o xpath.o -lxml2 -lz -lxml2 -L/usr/lib/R/lib -lR build 03-Oct-2018 12:14:19 installing to /usr/local/lib/R/site-library/XML/libs build 03-Oct-2018 12:14:19 ** R build 03-Oct-2018 12:14:19 ** inst build 03-Oct-2018 12:14:19 ** preparing package for lazy loading build 03-Oct-2018 12:14:20 Creating a generic function for 'source' from package 'base' in package 'XML' build 03-Oct-2018 12:14:20 in method for 'xmlAttrsToDataFrame' with signature '"AsIs"': no definition for class "AsIs" build 03-Oct-2018 12:14:20 in method for 'readKeyValueDB' with signature '"AsIs"': no definition for class "AsIs" build 03-Oct-2018 12:14:20 in method for 'readSolrDoc' with signature '"AsIs"': no definition for class "AsIs" build 03-Oct-2018 12:14:20 ** help build 03-Oct-2018 12:14:20 *** installing help indices build 03-Oct-2018 12:14:21 ** building package indices build 03-Oct-2018 12:14:21 ** testing if installed package can be loaded build 03-Oct-2018 12:14:21 * DONE (XML) build 03-Oct-2018 12:14:22 * installing *source* package 'randomForest' ... build 03-Oct-2018 12:14:22 ** package 'randomForest' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:14:22 ** libs build 03-Oct-2018 12:14:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c classTree.c -o classTree.o build 03-Oct-2018 12:14:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:14:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c regTree.c -o regTree.o build 03-Oct-2018 12:14:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c regrf.c -o regrf.o build 03-Oct-2018 12:14:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rf.c -o rf.o build 03-Oct-2018 12:14:23 gfortran -fpic -g -O2 -fstack-protector-strong -c rfsub.f -o rfsub.o build 03-Oct-2018 12:14:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rfutils.c -o rfutils.o build 03-Oct-2018 12:14:23 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o randomForest.so classTree.o init.o regTree.o regrf.o rf.o rfsub.o rfutils.o -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR build 03-Oct-2018 12:14:23 installing to /usr/local/lib/R/site-library/randomForest/libs build 03-Oct-2018 12:14:23 ** R build 03-Oct-2018 12:14:23 ** data build 03-Oct-2018 12:14:23 ** inst build 03-Oct-2018 12:14:23 ** preparing package for lazy loading build 03-Oct-2018 12:14:23 ** help build 03-Oct-2018 12:14:23 *** installing help indices build 03-Oct-2018 12:14:23 ** building package indices build 03-Oct-2018 12:14:23 ** testing if installed package can be loaded build 03-Oct-2018 12:14:23 * DONE (randomForest) build 03-Oct-2018 12:14:24 * installing *source* package 'kernlab' ... build 03-Oct-2018 12:14:24 ** package 'kernlab' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:14:24 ** libs build 03-Oct-2018 12:14:24 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c brweight.cpp -o brweight.o build 03-Oct-2018 12:14:24 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ctable.cpp -o ctable.o build 03-Oct-2018 12:14:24 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cweight.cpp -o cweight.o build 03-Oct-2018 12:14:24 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dbreakpt.c -o dbreakpt.o build 03-Oct-2018 12:14:24 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dcauchy.c -o dcauchy.o build 03-Oct-2018 12:14:24 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dgpnrm.c -o dgpnrm.o build 03-Oct-2018 12:14:24 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dgpstep.c -o dgpstep.o build 03-Oct-2018 12:14:25 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dprecond.c -o dprecond.o build 03-Oct-2018 12:14:25 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dprsrch.c -o dprsrch.o build 03-Oct-2018 12:14:25 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dspcg.c -o dspcg.o build 03-Oct-2018 12:14:25 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dtron.c -o dtron.o build 03-Oct-2018 12:14:25 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dtrpcg.c -o dtrpcg.o build 03-Oct-2018 12:14:25 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dtrqsol.c -o dtrqsol.o build 03-Oct-2018 12:14:25 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c esa.cpp -o esa.o build 03-Oct-2018 12:14:26 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c expdecayweight.cpp -o expdecayweight.o build 03-Oct-2018 12:14:26 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c inductionsort.cpp -o inductionsort.o build 03-Oct-2018 12:14:26 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:14:26 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c kspectrumweight.cpp -o kspectrumweight.o build 03-Oct-2018 12:14:26 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lcp.cpp -o lcp.o build 03-Oct-2018 12:14:27 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c misc.c -o misc.o build 03-Oct-2018 12:14:27 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c msufsort.cpp -o msufsort.o build 03-Oct-2018 12:14:28 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c solvebqp.c -o solvebqp.o build 03-Oct-2018 12:14:28 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stringk.c -o stringk.o build 03-Oct-2018 12:14:28 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stringkernel.cpp -o stringkernel.o build 03-Oct-2018 12:14:28 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c svm.cpp -o svm.o build 03-Oct-2018 12:14:30 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c wkasailcp.cpp -o wkasailcp.o build 03-Oct-2018 12:14:30 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c wmsufsort.cpp -o wmsufsort.o build 03-Oct-2018 12:14:31 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o kernlab.so brweight.o ctable.o cweight.o dbreakpt.o dcauchy.o dgpnrm.o dgpstep.o dprecond.o dprsrch.o dspcg.o dtron.o dtrpcg.o dtrqsol.o esa.o expdecayweight.o inductionsort.o init.o kspectrumweight.o lcp.o misc.o msufsort.o solvebqp.o stringk.o stringkernel.o svm.o wkasailcp.o wmsufsort.o -llapack -lblas -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR build 03-Oct-2018 12:14:31 installing to /usr/local/lib/R/site-library/kernlab/libs build 03-Oct-2018 12:14:31 ** R build 03-Oct-2018 12:14:31 ** data build 03-Oct-2018 12:14:31 ** inst build 03-Oct-2018 12:14:31 ** preparing package for lazy loading build 03-Oct-2018 12:14:31 Creating a generic function for 'terms' from package 'stats' in package 'kernlab' build 03-Oct-2018 12:14:31 Creating a generic function for 'fitted' from package 'stats' in package 'kernlab' build 03-Oct-2018 12:14:31 Creating a generic function for 'coef' from package 'stats' in package 'kernlab' build 03-Oct-2018 12:14:32 Creating a generic function for 'predict' from package 'stats' in package 'kernlab' build 03-Oct-2018 12:14:32 Creating a generic function for 'plot' from package 'graphics' in package 'kernlab' build 03-Oct-2018 12:14:32 ** help build 03-Oct-2018 12:14:32 *** installing help indices build 03-Oct-2018 12:14:33 ** building package indices build 03-Oct-2018 12:14:33 ** installing vignettes build 03-Oct-2018 12:14:33 ** testing if installed package can be loaded build 03-Oct-2018 12:14:33 * DONE (kernlab) build 03-Oct-2018 12:14:34 * installing *source* package 'Cairo' ... build 03-Oct-2018 12:14:34 ** package 'Cairo' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:14:34 checking for gcc... gcc -std=gnu99 build 03-Oct-2018 12:14:34 checking whether the C compiler works... yes build 03-Oct-2018 12:14:34 checking for C compiler default output file name... a.out build 03-Oct-2018 12:14:34 checking for suffix of executables... build 03-Oct-2018 12:14:34 checking whether we are cross compiling... no build 03-Oct-2018 12:14:34 checking for suffix of object files... o build 03-Oct-2018 12:14:34 checking whether we are using the GNU C compiler... yes build 03-Oct-2018 12:14:34 checking whether gcc -std=gnu99 accepts -g... yes build 03-Oct-2018 12:14:34 checking for gcc -std=gnu99 option to accept ISO C89... none needed build 03-Oct-2018 12:14:34 checking how to run the C preprocessor... gcc -std=gnu99 -E build 03-Oct-2018 12:14:34 checking for grep that handles long lines and -e... /bin/grep build 03-Oct-2018 12:14:34 checking for egrep... /bin/grep -E build 03-Oct-2018 12:14:34 checking for ANSI C header files... yes build 03-Oct-2018 12:14:34 checking for sys/wait.h that is POSIX.1 compatible... yes build 03-Oct-2018 12:14:34 checking for sys/types.h... yes build 03-Oct-2018 12:14:34 checking for sys/stat.h... yes build 03-Oct-2018 12:14:34 checking for stdlib.h... yes build 03-Oct-2018 12:14:34 checking for string.h... yes build 03-Oct-2018 12:14:34 checking for memory.h... yes build 03-Oct-2018 12:14:35 checking for strings.h... yes build 03-Oct-2018 12:14:35 checking for inttypes.h... yes build 03-Oct-2018 12:14:35 checking for stdint.h... yes build 03-Oct-2018 12:14:35 checking for unistd.h... yes build 03-Oct-2018 12:14:35 checking for string.h... (cached) yes build 03-Oct-2018 12:14:35 checking sys/time.h usability... yes build 03-Oct-2018 12:14:35 checking sys/time.h presence... yes build 03-Oct-2018 12:14:35 checking for sys/time.h... yes build 03-Oct-2018 12:14:35 checking for unistd.h... (cached) yes build 03-Oct-2018 12:14:35 checking for an ANSI C-conforming const... yes build 03-Oct-2018 12:14:35 checking for pkg-config... /usr/bin/pkg-config build 03-Oct-2018 12:14:35 checking whether pkg-config knows about cairo... yes build 03-Oct-2018 12:14:35 checking for configurable backends... cairo cairo-ft cairo-pdf cairo-png cairo-ps cairo-xlib cairo-xlib-xrender build 03-Oct-2018 12:14:35 configure: CAIRO_CFLAGS=-I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 build 03-Oct-2018 12:14:35 checking if R was compiled with the RConn patch... no build 03-Oct-2018 12:14:35 checking cairo.h usability... yes build 03-Oct-2018 12:14:35 checking cairo.h presence... yes build 03-Oct-2018 12:14:35 checking for cairo.h... yes build 03-Oct-2018 12:14:35 checking for PNG support in Cairo... yes build 03-Oct-2018 12:14:35 checking for ATS font support in Cairo... no build 03-Oct-2018 12:14:35 configure: CAIRO_LIBS=-lfreetype -lz -lpng12 -lz -lcairo -lXext -lXrender -lX11 build 03-Oct-2018 12:14:35 checking for library containing deflate... none required build 03-Oct-2018 12:14:35 checking whether Cairo programs can be compiled... yes build 03-Oct-2018 12:14:35 checking whether cairo_image_surface_get_format is declared... no build 03-Oct-2018 12:14:35 checking for FreeType support in cairo... yes build 03-Oct-2018 12:14:35 checking whether FreeType needs additional flags... no build 03-Oct-2018 12:14:35 checking wheter libjpeg works... yes build 03-Oct-2018 12:14:35 checking wheter libtiff works... yes build 03-Oct-2018 12:14:35 configure: creating ./config.status build 03-Oct-2018 12:14:35 config.status: creating src/Makevars build 03-Oct-2018 12:14:35 config.status: creating src/cconfig.h build 03-Oct-2018 12:14:35 ** libs build 03-Oct-2018 12:14:35 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I. -Iinclude -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cairobem.c -o cairobem.o build 03-Oct-2018 12:14:35 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I. -Iinclude -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cairogd.c -o cairogd.o build 03-Oct-2018 12:14:36 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I. -Iinclude -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cairotalk.c -o cairotalk.o build 03-Oct-2018 12:14:36 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I. -Iinclude -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c img-backend.c -o img-backend.o build 03-Oct-2018 12:14:36 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I. -Iinclude -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c img-jpeg.c -o img-jpeg.o build 03-Oct-2018 12:14:36 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I. -Iinclude -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c img-tiff.c -o img-tiff.o build 03-Oct-2018 12:14:36 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I. -Iinclude -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pdf-backend.c -o pdf-backend.o build 03-Oct-2018 12:14:36 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I. -Iinclude -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ps-backend.c -o ps-backend.o build 03-Oct-2018 12:14:36 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I. -Iinclude -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c svg-backend.c -o svg-backend.o build 03-Oct-2018 12:14:37 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I. -Iinclude -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c w32-backend.c -o w32-backend.o build 03-Oct-2018 12:14:37 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I. -Iinclude -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xlib-backend.c -o xlib-backend.o build 03-Oct-2018 12:14:37 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o Cairo.so cairobem.o cairogd.o cairotalk.o img-backend.o img-jpeg.o img-tiff.o pdf-backend.o ps-backend.o svg-backend.o w32-backend.o xlib-backend.o -lfreetype -lz -lpng12 -lz -lcairo -lXext -lXrender -lX11 -ljpeg -ltiff -L/usr/lib/R/lib -lR build 03-Oct-2018 12:14:37 installing to /usr/local/lib/R/site-library/Cairo/libs build 03-Oct-2018 12:14:37 ** R build 03-Oct-2018 12:14:37 ** preparing package for lazy loading build 03-Oct-2018 12:14:37 ** help build 03-Oct-2018 12:14:37 *** installing help indices build 03-Oct-2018 12:14:37 ** building package indices build 03-Oct-2018 12:14:37 ** testing if installed package can be loaded build 03-Oct-2018 12:14:37 * DONE (Cairo) build 03-Oct-2018 12:14:37 * installing *source* package 'quadprog' ... build 03-Oct-2018 12:14:37 ** package 'quadprog' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:14:37 ** libs build 03-Oct-2018 12:14:37 gfortran -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -c aind.f -o aind.o build 03-Oct-2018 12:14:37 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:14:37 gfortran -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -ffloat-store -c -o solve.QP.compact.o solve.QP.compact.f build 03-Oct-2018 12:14:38 gfortran -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -ffloat-store -c -o solve.QP.o solve.QP.f build 03-Oct-2018 12:14:38 gfortran -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -c util.f -o util.o build 03-Oct-2018 12:14:38 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o quadprog.so aind.o init.o solve.QP.compact.o solve.QP.o util.o -lblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR build 03-Oct-2018 12:14:38 installing to /usr/local/lib/R/site-library/quadprog/libs build 03-Oct-2018 12:14:38 ** R build 03-Oct-2018 12:14:38 ** preparing package for lazy loading build 03-Oct-2018 12:14:38 ** help build 03-Oct-2018 12:14:38 *** installing help indices build 03-Oct-2018 12:14:38 ** building package indices build 03-Oct-2018 12:14:38 ** testing if installed package can be loaded build 03-Oct-2018 12:14:38 * DONE (quadprog) build 03-Oct-2018 12:14:39 * installing *source* package 'sp' ... build 03-Oct-2018 12:14:39 ** package 'sp' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:14:39 ** libs build 03-Oct-2018 12:14:39 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rcentroid.c -o Rcentroid.o build 03-Oct-2018 12:14:39 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gcdist.c -o gcdist.o build 03-Oct-2018 12:14:39 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:14:39 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pip.c -o pip.o build 03-Oct-2018 12:14:39 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pip2.c -o pip2.o build 03-Oct-2018 12:14:39 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sp_xports.c -o sp_xports.o build 03-Oct-2018 12:14:39 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c surfaceArea.c -o surfaceArea.o build 03-Oct-2018 12:14:40 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c zerodist.c -o zerodist.o build 03-Oct-2018 12:14:40 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o sp.so Rcentroid.o gcdist.o init.o pip.o pip2.o sp_xports.o surfaceArea.o zerodist.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:14:40 installing to /usr/local/lib/R/site-library/sp/libs build 03-Oct-2018 12:14:40 ** R build 03-Oct-2018 12:14:40 ** data build 03-Oct-2018 12:14:40 ** demo build 03-Oct-2018 12:14:40 ** inst build 03-Oct-2018 12:14:40 ** preparing package for lazy loading build 03-Oct-2018 12:14:40 ** help build 03-Oct-2018 12:14:41 *** installing help indices build 03-Oct-2018 12:14:41 ** building package indices build 03-Oct-2018 12:14:41 ** installing vignettes build 03-Oct-2018 12:14:41 ** testing if installed package can be loaded build 03-Oct-2018 12:14:41 * DONE (sp) build 03-Oct-2018 12:14:42 * installing *source* package 'RColorBrewer' ... build 03-Oct-2018 12:14:42 ** package 'RColorBrewer' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:14:42 ** R build 03-Oct-2018 12:14:42 ** inst build 03-Oct-2018 12:14:42 ** preparing package for lazy loading build 03-Oct-2018 12:14:42 ** help build 03-Oct-2018 12:14:42 *** installing help indices build 03-Oct-2018 12:14:42 ** building package indices build 03-Oct-2018 12:14:42 ** testing if installed package can be loaded build 03-Oct-2018 12:14:43 * DONE (RColorBrewer) build 03-Oct-2018 12:14:43 * installing *source* package 'lubridate' ... build 03-Oct-2018 12:14:43 ** package 'lubridate' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:14:43 ** libs build 03-Oct-2018 12:14:43 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o build 03-Oct-2018 12:14:48 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c datetime.c -o datetime.o build 03-Oct-2018 12:14:48 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c period.c -o period.o build 03-Oct-2018 12:14:48 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tparse.c -o tparse.o build 03-Oct-2018 12:14:48 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c update.cpp -o update.o build 03-Oct-2018 12:14:53 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o build 03-Oct-2018 12:14:53 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz/src/time_zone_fixed.cc -o cctz/src/time_zone_fixed.o build 03-Oct-2018 12:14:54 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz/src/time_zone_if.cc -o cctz/src/time_zone_if.o build 03-Oct-2018 12:14:55 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz/src/time_zone_impl.cc -o cctz/src/time_zone_impl.o build 03-Oct-2018 12:14:55 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz/src/time_zone_info.cc -o cctz/src/time_zone_info.o build 03-Oct-2018 12:14:57 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz/src/time_zone_libc.cc -o cctz/src/time_zone_libc.o build 03-Oct-2018 12:14:58 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz/src/time_zone_lookup.cc -o cctz/src/time_zone_lookup.o build 03-Oct-2018 12:14:59 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz/src/time_zone_posix.cc -o cctz/src/time_zone_posix.o build 03-Oct-2018 12:14:59 ar rcs libcctz.a ./cctz/src/time_zone_fixed.o ./cctz/src/time_zone_if.o ./cctz/src/time_zone_impl.o ./cctz/src/time_zone_info.o ./cctz/src/time_zone_libc.o ./cctz/src/time_zone_lookup.o ./cctz/src/time_zone_posix.o build 03-Oct-2018 12:14:59 g++ -std=c++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o lubridate.so RcppExports.o datetime.o period.o tparse.o update.o utils.o -L. -lcctz -L/usr/lib/R/lib -lR build 03-Oct-2018 12:14:59 installing to /usr/local/lib/R/site-library/lubridate/libs build 03-Oct-2018 12:14:59 ** R build 03-Oct-2018 12:14:59 ** data build 03-Oct-2018 12:14:59 *** moving datasets to lazyload DB build 03-Oct-2018 12:14:59 ** inst build 03-Oct-2018 12:15:00 ** preparing package for lazy loading build 03-Oct-2018 12:15:00 ** help build 03-Oct-2018 12:15:01 *** installing help indices build 03-Oct-2018 12:15:01 *** copying figures build 03-Oct-2018 12:15:01 ** building package indices build 03-Oct-2018 12:15:01 ** installing vignettes build 03-Oct-2018 12:15:01 ** testing if installed package can be loaded build 03-Oct-2018 12:15:01 * DONE (lubridate) build 03-Oct-2018 12:15:02 * installing *source* package 'shiny' ... build 03-Oct-2018 12:15:02 ** package 'shiny' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:15:08 ** R build 03-Oct-2018 12:15:08 ** inst build 03-Oct-2018 12:15:08 ** preparing package for lazy loading build 03-Oct-2018 12:15:08 Warning: replacing previous import by 'Rcpp::evalCpp' when loading 'later' build 03-Oct-2018 12:15:08 ** help build 03-Oct-2018 12:15:09 *** installing help indices build 03-Oct-2018 12:15:09 ** building package indices build 03-Oct-2018 12:15:10 ** testing if installed package can be loaded build 03-Oct-2018 12:15:10 Warning: replacing previous import by 'Rcpp::evalCpp' when loading 'later' build 03-Oct-2018 12:15:10 * DONE (shiny) build 03-Oct-2018 12:15:10 * installing *source* package 'reshape2' ... build 03-Oct-2018 12:15:10 ** package 'reshape2' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:15:11 ** libs build 03-Oct-2018 12:15:11 g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o build 03-Oct-2018 12:15:15 g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c melt.cpp -o melt.o build 03-Oct-2018 12:15:18 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o reshape2.so RcppExports.o melt.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:15:19 installing to /usr/local/lib/R/site-library/reshape2/libs build 03-Oct-2018 12:15:19 ** R build 03-Oct-2018 12:15:19 ** data build 03-Oct-2018 12:15:19 *** moving datasets to lazyload DB build 03-Oct-2018 12:15:19 ** inst build 03-Oct-2018 12:15:19 ** preparing package for lazy loading build 03-Oct-2018 12:15:19 ** help build 03-Oct-2018 12:15:19 *** installing help indices build 03-Oct-2018 12:15:19 ** building package indices build 03-Oct-2018 12:15:19 ** testing if installed package can be loaded build 03-Oct-2018 12:15:19 * DONE (reshape2) build 03-Oct-2018 12:15:20 * installing *source* package 'pracma' ... build 03-Oct-2018 12:15:20 ** package 'pracma' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:15:20 ** R build 03-Oct-2018 12:15:20 ** data build 03-Oct-2018 12:15:20 *** moving datasets to lazyload DB build 03-Oct-2018 12:15:20 ** demo build 03-Oct-2018 12:15:20 ** byte-compile and prepare package for lazy loading build 03-Oct-2018 12:15:27 ** help build 03-Oct-2018 12:15:28 *** installing help indices build 03-Oct-2018 12:15:29 ** building package indices build 03-Oct-2018 12:15:29 ** testing if installed package can be loaded build 03-Oct-2018 12:15:29 * DONE (pracma) build 03-Oct-2018 12:15:30 * installing *source* package 'gdata' ... build 03-Oct-2018 12:15:30 ** package 'gdata' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:15:30 ** R build 03-Oct-2018 12:15:30 ** data build 03-Oct-2018 12:15:30 ** inst build 03-Oct-2018 12:15:30 ** preparing package for lazy loading build 03-Oct-2018 12:15:30 ** help build 03-Oct-2018 12:15:30 *** installing help indices build 03-Oct-2018 12:15:30 ** building package indices build 03-Oct-2018 12:15:30 ** installing vignettes build 03-Oct-2018 12:15:30 ** testing if installed package can be loaded build 03-Oct-2018 12:15:31 * DONE (gdata) build 03-Oct-2018 12:15:31 * installing *source* package 'caTools' ... build 03-Oct-2018 12:15:31 ** package 'caTools' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:15:31 ** libs build 03-Oct-2018 12:15:31 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Gif2R.cpp -o Gif2R.o build 03-Oct-2018 12:15:31 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c GifTools.cpp -o GifTools.o build 03-Oct-2018 12:15:31 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c runfunc.c -o runfunc.o build 03-Oct-2018 12:15:32 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o caTools.so Gif2R.o GifTools.o runfunc.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:15:32 installing to /usr/local/lib/R/site-library/caTools/libs build 03-Oct-2018 12:15:32 ** R build 03-Oct-2018 12:15:32 ** preparing package for lazy loading build 03-Oct-2018 12:15:32 ** help build 03-Oct-2018 12:15:32 *** installing help indices build 03-Oct-2018 12:15:32 ** building package indices build 03-Oct-2018 12:15:32 ** testing if installed package can be loaded build 03-Oct-2018 12:15:32 * DONE (caTools) build 03-Oct-2018 12:15:33 * installing *source* package 'httr' ... build 03-Oct-2018 12:15:33 ** package 'httr' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:15:33 ** R build 03-Oct-2018 12:15:33 ** demo build 03-Oct-2018 12:15:33 ** inst build 03-Oct-2018 12:15:33 ** preparing package for lazy loading build 03-Oct-2018 12:15:33 ** help build 03-Oct-2018 12:15:33 *** installing help indices build 03-Oct-2018 12:15:33 ** building package indices build 03-Oct-2018 12:15:33 ** installing vignettes build 03-Oct-2018 12:15:33 ** testing if installed package can be loaded build 03-Oct-2018 12:15:33 * DONE (httr) build 03-Oct-2018 12:15:34 * installing *source* package 'latticeExtra' ... build 03-Oct-2018 12:15:34 ** package 'latticeExtra' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:15:34 ** R build 03-Oct-2018 12:15:34 ** data build 03-Oct-2018 12:15:34 *** moving datasets to lazyload DB build 03-Oct-2018 12:15:34 ** inst build 03-Oct-2018 12:15:34 ** preparing package for lazy loading build 03-Oct-2018 12:15:35 ** help build 03-Oct-2018 12:15:35 *** installing help indices build 03-Oct-2018 12:15:35 ** building package indices build 03-Oct-2018 12:15:35 ** testing if installed package can be loaded build 03-Oct-2018 12:15:35 * DONE (latticeExtra) build 03-Oct-2018 12:15:36 * installing *source* package 'htmlTable' ... build 03-Oct-2018 12:15:36 ** package 'htmlTable' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:15:36 ** R build 03-Oct-2018 12:15:36 ** data build 03-Oct-2018 12:15:36 ** inst build 03-Oct-2018 12:15:36 ** preparing package for lazy loading build 03-Oct-2018 12:15:36 ** help build 03-Oct-2018 12:15:36 *** installing help indices build 03-Oct-2018 12:15:36 ** building package indices build 03-Oct-2018 12:15:36 ** installing vignettes build 03-Oct-2018 12:15:36 ** testing if installed package can be loaded build 03-Oct-2018 12:15:36 * DONE (htmlTable) build 03-Oct-2018 12:15:37 * installing *source* package 'TH.data' ... build 03-Oct-2018 12:15:37 ** package 'TH.data' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:15:37 ** data build 03-Oct-2018 12:15:37 *** moving datasets to lazyload DB build 03-Oct-2018 12:15:37 ** demo build 03-Oct-2018 12:15:37 ** inst build 03-Oct-2018 12:15:37 ** help build 03-Oct-2018 12:15:37 *** installing help indices build 03-Oct-2018 12:15:37 ** building package indices build 03-Oct-2018 12:15:37 ** testing if installed package can be loaded build 03-Oct-2018 12:15:39 * DONE (TH.data) build 03-Oct-2018 12:15:39 * installing *source* package 'sandwich' ... build 03-Oct-2018 12:15:39 ** package 'sandwich' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:15:39 ** R build 03-Oct-2018 12:15:39 ** data build 03-Oct-2018 12:15:39 ** inst build 03-Oct-2018 12:15:39 ** preparing package for lazy loading build 03-Oct-2018 12:15:39 ** help build 03-Oct-2018 12:15:39 *** installing help indices build 03-Oct-2018 12:15:39 ** building package indices build 03-Oct-2018 12:15:39 ** installing vignettes build 03-Oct-2018 12:15:39 ** testing if installed package can be loaded build 03-Oct-2018 12:15:40 * DONE (sandwich) build 03-Oct-2018 12:15:40 * installing *source* package 'fontquiver' ... build 03-Oct-2018 12:15:40 ** package 'fontquiver' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:15:40 ** R build 03-Oct-2018 12:15:40 ** inst build 03-Oct-2018 12:15:40 ** preparing package for lazy loading build 03-Oct-2018 12:15:40 ** help build 03-Oct-2018 12:15:40 *** installing help indices build 03-Oct-2018 12:15:40 ** building package indices build 03-Oct-2018 12:15:40 ** testing if installed package can be loaded build 03-Oct-2018 12:15:40 * DONE (fontquiver) build 03-Oct-2018 12:15:41 * installing *source* package 'blob' ... build 03-Oct-2018 12:15:41 ** package 'blob' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:15:41 ** R build 03-Oct-2018 12:15:41 ** preparing package for lazy loading build 03-Oct-2018 12:15:41 ** help build 03-Oct-2018 12:15:41 *** installing help indices build 03-Oct-2018 12:15:41 ** building package indices build 03-Oct-2018 12:15:41 ** testing if installed package can be loaded build 03-Oct-2018 12:15:41 * DONE (blob) build 03-Oct-2018 12:15:41 * installing *source* package 'raster' ... build 03-Oct-2018 12:15:41 ** package 'raster' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:15:42 ** libs build 03-Oct-2018 12:15:42 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o build 03-Oct-2018 12:15:46 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c aggregate.cpp -o aggregate.o build 03-Oct-2018 12:15:46 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c area.cpp -o area.o build 03-Oct-2018 12:15:47 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bilinear.cpp -o bilinear.o build 03-Oct-2018 12:15:50 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c broom.c -o broom.o build 03-Oct-2018 12:15:50 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cellRowCol.cpp -o cellRowCol.o build 03-Oct-2018 12:15:53 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c clamp.c -o clamp.o build 03-Oct-2018 12:15:53 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c distance.cpp -o distance.o build 03-Oct-2018 12:15:57 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c edge.c -o edge.o build 03-Oct-2018 12:15:57 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c focal_fun.c -o focal_fun.o build 03-Oct-2018 12:15:57 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c focal_get.c -o focal_get.o build 03-Oct-2018 12:15:57 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c focal_sum.c -o focal_sum.o build 03-Oct-2018 12:15:57 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c geodesic.c -o geodesic.o build 03-Oct-2018 12:15:58 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c getPolygons.cpp -o getPolygons.o build 03-Oct-2018 12:16:02 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c intersect.c -o intersect.o build 03-Oct-2018 12:16:02 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c layerize.c -o layerize.o build 03-Oct-2018 12:16:02 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c modal.cpp -o modal.o build 03-Oct-2018 12:16:05 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pointinpoly.c -o pointinpoly.o build 03-Oct-2018 12:16:05 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ppmin.cpp -o ppmin.o build 03-Oct-2018 12:16:08 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c r_terrain.c -o r_terrain.o build 03-Oct-2018 12:16:09 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rcpp_aggregate.cpp -o rcpp_aggregate.o build 03-Oct-2018 12:16:12 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rcpp_distance.cpp -o rcpp_distance.o build 03-Oct-2018 12:16:17 g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rcpp_xyCell.cpp -o rcpp_xyCell.o build 03-Oct-2018 12:16:21 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c reclass.c -o reclass.o build 03-Oct-2018 12:16:21 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c solar.c -o solar.o build 03-Oct-2018 12:16:21 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o build 03-Oct-2018 12:16:21 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c wirth.c -o wirth.o build 03-Oct-2018 12:16:21 g++ -std=c++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o raster.so RcppExports.o aggregate.o area.o bilinear.o broom.o cellRowCol.o clamp.o distance.o edge.o focal_fun.o focal_get.o focal_sum.o geodesic.o getPolygons.o intersect.o layerize.o modal.o pointinpoly.o ppmin.o r_terrain.o rcpp_aggregate.o rcpp_distance.o rcpp_xyCell.o reclass.o solar.o util.o wirth.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:16:21 installing to /usr/local/lib/R/site-library/raster/libs build 03-Oct-2018 12:16:21 ** R build 03-Oct-2018 12:16:21 ** inst build 03-Oct-2018 12:16:21 ** byte-compile and prepare package for lazy loading build 03-Oct-2018 12:16:22 Creating a generic function for 'aggregate' from package 'stats' in package 'raster' build 03-Oct-2018 12:16:22 Creating a generic function for 'as.array' from package 'base' in package 'raster' build 03-Oct-2018 12:16:22 Creating a generic function for 'as.matrix' from package 'base' in package 'raster' build 03-Oct-2018 12:16:22 Creating a generic function for 'as.vector' from package 'base' in package 'raster' build 03-Oct-2018 12:16:22 in method for 'brick' with signature 'x="big.matrix"': no definition for class "big.matrix" build 03-Oct-2018 12:16:22 in method for 'brick' with signature 'x="kasc"': no definition for class "kasc" build 03-Oct-2018 12:16:22 in method for 'brick' with signature 'x="grf"': no definition for class "grf" build 03-Oct-2018 12:16:22 in method for 'coerce' with signature '"STFDF","RasterBrick"': no definition for class "STFDF" build 03-Oct-2018 12:16:22 in method for 'coerce' with signature '"STSDF","RasterBrick"': no definition for class "STSDF" build 03-Oct-2018 12:16:22 in method for 'coerce' with signature '"asc","RasterLayer"': no definition for class "asc" build 03-Oct-2018 12:16:22 in method for 'coerce' with signature '"RasterLayer","asc"': no definition for class "asc" build 03-Oct-2018 12:16:22 in method for 'coerce' with signature '"kasc","RasterBrick"': no definition for class "kasc" build 03-Oct-2018 12:16:22 in method for 'coerce' with signature '"kasc","RasterStack"': no definition for class "kasc" build 03-Oct-2018 12:16:22 in method for 'coerce' with signature '"kde","RasterLayer"': no definition for class "kde" build 03-Oct-2018 12:16:22 in method for 'coerce' with signature '"grf","RasterBrick"': no definition for class "grf" build 03-Oct-2018 12:16:22 in method for 'coerce' with signature '"grf","RasterLayer"': no definition for class "grf" build 03-Oct-2018 12:16:22 Creating a generic function for 'nrow' from package 'base' in package 'raster' build 03-Oct-2018 12:16:22 Creating a generic function for 'ncol' from package 'base' in package 'raster' build 03-Oct-2018 12:16:23 in method for 'extent' with signature 'x="sf"': no definition for class "sf" build 03-Oct-2018 12:16:23 in method for 'extract' with signature 'x="Raster",y="sf"': no definition for class "sf" build 03-Oct-2018 12:16:23 Creating a generic function for 'hist' from package 'graphics' in package 'raster' build 03-Oct-2018 12:16:23 Creating a generic function for 'as.list' from package 'base' in package 'raster' build 03-Oct-2018 12:16:23 in method for 'mask' with signature 'x="Raster",mask="sf"': no definition for class "sf" build 03-Oct-2018 12:16:23 Creating a generic function for 'mean' from package 'base' in package 'raster' build 03-Oct-2018 12:16:23 Creating a generic function for 'labels' from package 'base' in package 'raster' build 03-Oct-2018 12:16:23 Creating a generic function for 'lines' from package 'graphics' in package 'raster' build 03-Oct-2018 12:16:23 Creating a generic function for 'print' from package 'base' in package 'raster' build 03-Oct-2018 12:16:23 Creating a generic function for 'quantile' from package 'stats' in package 'raster' build 03-Oct-2018 12:16:23 in method for 'raster' with signature 'x="big.matrix"': no definition for class "big.matrix" build 03-Oct-2018 12:16:23 in method for 'raster' with signature 'x="kasc"': no definition for class "kasc" build 03-Oct-2018 12:16:23 in method for 'raster' with signature 'x="asc"': no definition for class "asc" build 03-Oct-2018 12:16:23 in method for 'raster' with signature 'x="kde"': no definition for class "kde" build 03-Oct-2018 12:16:23 in method for 'raster' with signature 'x="grf"': no definition for class "grf" build 03-Oct-2018 12:16:23 in method for 'rasterize' with signature 'x="sf",y="Raster"': no definition for class "sf" build 03-Oct-2018 12:16:23 Creating a generic function for 'rowSums' from package 'base' in package 'raster' build 03-Oct-2018 12:16:23 Creating a generic function for 'colSums' from package 'base' in package 'raster' build 03-Oct-2018 12:16:23 Creating a generic function for 'scale' from package 'base' in package 'raster' build 03-Oct-2018 12:16:23 in method for 'stack' with signature 'x="kasc"': no definition for class "kasc" build 03-Oct-2018 12:16:42 ** help build 03-Oct-2018 12:16:43 *** installing help indices build 03-Oct-2018 12:16:43 ** building package indices build 03-Oct-2018 12:16:44 ** installing vignettes build 03-Oct-2018 12:16:44 ** testing if installed package can be loaded build 03-Oct-2018 12:16:45 * DONE (raster) build 03-Oct-2018 12:16:45 * installing *source* package 'testthat' ... build 03-Oct-2018 12:16:45 ** package 'testthat' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:16:45 ** libs build 03-Oct-2018 12:16:45 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:16:45 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c reassign.c -o reassign.o build 03-Oct-2018 12:16:45 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c test-catch.cpp -o test-catch.o build 03-Oct-2018 12:16:46 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c test-example.cpp -o test-example.o build 03-Oct-2018 12:16:46 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c test-runner.cpp -o test-runner.o build 03-Oct-2018 12:16:57 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o testthat.so init.o reassign.o test-catch.o test-example.o test-runner.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:16:57 installing to /usr/local/lib/R/site-library/testthat/libs build 03-Oct-2018 12:16:57 ** R build 03-Oct-2018 12:16:57 ** inst build 03-Oct-2018 12:16:57 ** preparing package for lazy loading build 03-Oct-2018 12:16:57 ** help build 03-Oct-2018 12:16:57 *** installing help indices build 03-Oct-2018 12:16:57 *** copying figures build 03-Oct-2018 12:16:57 ** building package indices build 03-Oct-2018 12:16:57 ** installing vignettes build 03-Oct-2018 12:16:57 ** testing if installed package can be loaded build 03-Oct-2018 12:16:58 * DONE (testthat) build 03-Oct-2018 12:16:58 * installing *source* package 'mapproj' ... build 03-Oct-2018 12:16:58 ** package 'mapproj' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:16:58 ** libs build 03-Oct-2018 12:16:58 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c aitoff.c -o aitoff.o build 03-Oct-2018 12:16:58 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c albers.c -o albers.o build 03-Oct-2018 12:16:58 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c azequalarea.c -o azequalarea.o build 03-Oct-2018 12:16:58 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c azequidist.c -o azequidist.o build 03-Oct-2018 12:16:58 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bicentric.c -o bicentric.o build 03-Oct-2018 12:16:58 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bonne.c -o bonne.o build 03-Oct-2018 12:16:58 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ccubrt.c -o ccubrt.o build 03-Oct-2018 12:16:58 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c complex.c -o complex.o build 03-Oct-2018 12:16:58 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c conic.c -o conic.o build 03-Oct-2018 12:16:58 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cubrt.c -o cubrt.o build 03-Oct-2018 12:16:58 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cuts.c -o cuts.o build 03-Oct-2018 12:16:59 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cylequalarea.c -o cylequalarea.o build 03-Oct-2018 12:16:59 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cylindrical.c -o cylindrical.o build 03-Oct-2018 12:16:59 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c eisenlohr.c -o eisenlohr.o build 03-Oct-2018 12:16:59 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c elco2.c -o elco2.o build 03-Oct-2018 12:16:59 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c elliptic.c -o elliptic.o build 03-Oct-2018 12:16:59 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fisheye.c -o fisheye.o build 03-Oct-2018 12:16:59 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gall.c -o gall.o build 03-Oct-2018 12:16:59 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gilbert.c -o gilbert.o build 03-Oct-2018 12:16:59 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c guyou.c -o guyou.o build 03-Oct-2018 12:16:59 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c harrison.c -o harrison.o build 03-Oct-2018 12:16:59 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hex.c -o hex.o build 03-Oct-2018 12:16:59 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c homing.c -o homing.o build 03-Oct-2018 12:16:59 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:16:59 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lagrange.c -o lagrange.o build 03-Oct-2018 12:16:59 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lambert.c -o lambert.o build 03-Oct-2018 12:16:59 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c laue.c -o laue.o build 03-Oct-2018 12:16:59 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lune.c -o lune.o build 03-Oct-2018 12:17:00 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mapproject.c -o mapproject.o build 03-Oct-2018 12:17:00 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mercator.c -o mercator.o build 03-Oct-2018 12:17:00 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mollweide.c -o mollweide.o build 03-Oct-2018 12:17:00 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c newyorker.c -o newyorker.o build 03-Oct-2018 12:17:00 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c orthographic.c -o orthographic.o build 03-Oct-2018 12:17:00 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c perspective.c -o perspective.o build 03-Oct-2018 12:17:00 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c polyconic.c -o polyconic.o build 03-Oct-2018 12:17:00 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rectangular.c -o rectangular.o build 03-Oct-2018 12:17:00 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c simpleconic.c -o simpleconic.o build 03-Oct-2018 12:17:00 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sinusoidal.c -o sinusoidal.o build 03-Oct-2018 12:17:00 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tetra.c -o tetra.o build 03-Oct-2018 12:17:00 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c trapezoidal.c -o trapezoidal.o build 03-Oct-2018 12:17:00 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c twocirc.c -o twocirc.o build 03-Oct-2018 12:17:00 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c zcoord.c -o zcoord.o build 03-Oct-2018 12:17:00 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o mapproj.so aitoff.o albers.o azequalarea.o azequidist.o bicentric.o bonne.o ccubrt.o complex.o conic.o cubrt.o cuts.o cylequalarea.o cylindrical.o eisenlohr.o elco2.o elliptic.o fisheye.o gall.o gilbert.o guyou.o harrison.o hex.o homing.o init.o lagrange.o lambert.o laue.o lune.o mapproject.o mercator.o mollweide.o newyorker.o orthographic.o perspective.o polyconic.o rectangular.o simpleconic.o sinusoidal.o tetra.o trapezoidal.o twocirc.o zcoord.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:17:00 installing to /usr/local/lib/R/site-library/mapproj/libs build 03-Oct-2018 12:17:00 ** R build 03-Oct-2018 12:17:00 ** preparing package for lazy loading build 03-Oct-2018 12:17:00 ** help build 03-Oct-2018 12:17:00 *** installing help indices build 03-Oct-2018 12:17:00 ** building package indices build 03-Oct-2018 12:17:01 ** testing if installed package can be loaded build 03-Oct-2018 12:17:01 * DONE (mapproj) build 03-Oct-2018 12:17:01 * installing *source* package 'maptools' ... build 03-Oct-2018 12:17:01 ** package 'maptools' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:17:01 ** libs build 03-Oct-2018 12:17:01 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rcentroid.c -o Rcentroid.o build 03-Oct-2018 12:17:01 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rgshhs.c -o Rgshhs.o build 03-Oct-2018 12:17:01 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rshapeget.c -o Rshapeget.o build 03-Oct-2018 12:17:02 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rshapeinfo.c -o Rshapeinfo.o build 03-Oct-2018 12:17:02 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rshapewrite.c -o Rshapewrite.o build 03-Oct-2018 12:17:02 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rshapewrite1.c -o Rshapewrite1.o build 03-Oct-2018 12:17:02 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:17:02 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c insiders.c -o insiders.o build 03-Oct-2018 12:17:02 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pip.c -o pip.o build 03-Oct-2018 12:17:02 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c shpopen.c -o shpopen.o build 03-Oct-2018 12:17:02 shpopen.c: In function 'SHPOpen': build 03-Oct-2018 12:17:02 shpopen.c:507:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] build 03-Oct-2018 12:17:02 fread( pabyBuf, 100, 1, psSHP->fpSHP ); build 03-Oct-2018 12:17:02 ^ build 03-Oct-2018 12:17:03 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c shptree.c -o shptree.o build 03-Oct-2018 12:17:03 shptree.c: In function 'SHPSearchDiskTree': build 03-Oct-2018 12:17:03 shptree.c:829:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] build 03-Oct-2018 12:17:03 fread( abyBuf, 16, 1, fp ); build 03-Oct-2018 12:17:03 ^ build 03-Oct-2018 12:17:03 shptree.c: In function 'SHPSearchDiskTreeNode': build 03-Oct-2018 12:17:03 shptree.c:731:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] build 03-Oct-2018 12:17:03 fread( &offset, 4, 1, fp ); build 03-Oct-2018 12:17:03 ^ build 03-Oct-2018 12:17:03 shptree.c:734:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] build 03-Oct-2018 12:17:03 fread( adfNodeBoundsMin, sizeof(double), 2, fp ); build 03-Oct-2018 12:17:03 ^ build 03-Oct-2018 12:17:03 shptree.c:735:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] build 03-Oct-2018 12:17:03 fread( adfNodeBoundsMax, sizeof(double), 2, fp ); build 03-Oct-2018 12:17:03 ^ build 03-Oct-2018 12:17:03 shptree.c:744:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] build 03-Oct-2018 12:17:03 fread( &numshapes, 4, 1, fp ); build 03-Oct-2018 12:17:03 ^ build 03-Oct-2018 12:17:03 shptree.c:771:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] build 03-Oct-2018 12:17:03 fread( *ppanResultBuffer + *pnResultCount, build 03-Oct-2018 12:17:03 ^ build 03-Oct-2018 12:17:03 shptree.c:786:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] build 03-Oct-2018 12:17:03 fread( &numsubnodes, 4, 1, fp ); build 03-Oct-2018 12:17:03 ^ build 03-Oct-2018 12:17:03 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o maptools.so Rcentroid.o Rgshhs.o Rshapeget.o Rshapeinfo.o Rshapewrite.o Rshapewrite1.o init.o insiders.o pip.o shpopen.o shptree.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:17:03 installing to /usr/local/lib/R/site-library/maptools/libs build 03-Oct-2018 12:17:03 ** R build 03-Oct-2018 12:17:03 ** data build 03-Oct-2018 12:17:03 ** inst build 03-Oct-2018 12:17:03 ** preparing package for lazy loading build 03-Oct-2018 12:17:03 ** help build 03-Oct-2018 12:17:03 *** installing help indices build 03-Oct-2018 12:17:04 ** building package indices build 03-Oct-2018 12:17:04 ** installing vignettes build 03-Oct-2018 12:17:04 ** testing if installed package can be loaded build 03-Oct-2018 12:17:04 * DONE (maptools) build 03-Oct-2018 12:17:05 * installing *source* package 'quantreg' ... build 03-Oct-2018 12:17:05 ** package 'quantreg' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:17:05 ** libs build 03-Oct-2018 12:17:05 gfortran -fpic -g -O2 -fstack-protector-strong -c akj.f -o akj.o build 03-Oct-2018 12:17:05 gfortran -fpic -g -O2 -fstack-protector-strong -c boot.f -o boot.o build 03-Oct-2018 12:17:05 gfortran -fpic -g -O2 -fstack-protector-strong -c bound.f -o bound.o build 03-Oct-2018 12:17:05 gfortran -fpic -g -O2 -fstack-protector-strong -c boundc.f -o boundc.o build 03-Oct-2018 12:17:05 gfortran -fpic -g -O2 -fstack-protector-strong -c brute.f -o brute.o build 03-Oct-2018 12:17:05 gfortran -fpic -g -O2 -fstack-protector-strong -c chlfct.f -o chlfct.o build 03-Oct-2018 12:17:05 gfortran -fpic -g -O2 -fstack-protector-strong -c cholesky.f -o cholesky.o build 03-Oct-2018 12:17:06 gfortran -fpic -g -O2 -fstack-protector-strong -c combos.f -o combos.o build 03-Oct-2018 12:17:06 gfortran -fpic -g -O2 -fstack-protector-strong -c crq.f -o crq.o build 03-Oct-2018 12:17:07 gfortran -fpic -g -O2 -fstack-protector-strong -c crqfnb.f -o crqfnb.o build 03-Oct-2018 12:17:07 gfortran -fpic -g -O2 -fstack-protector-strong -c dsel05.f -o dsel05.o build 03-Oct-2018 12:17:07 gfortran -fpic -g -O2 -fstack-protector-strong -c etime.f -o etime.o build 03-Oct-2018 12:17:07 gfortran -fpic -g -O2 -fstack-protector-strong -c extract.f -o extract.o build 03-Oct-2018 12:17:07 gfortran -fpic -g -O2 -fstack-protector-strong -c idmin.f -o idmin.o build 03-Oct-2018 12:17:07 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:17:07 gfortran -fpic -g -O2 -fstack-protector-strong -c iswap.f -o iswap.o build 03-Oct-2018 12:17:07 gfortran -fpic -g -O2 -fstack-protector-strong -c kuantile.f -o kuantile.o build 03-Oct-2018 12:17:07 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mcmb.c -o mcmb.o build 03-Oct-2018 12:17:07 gfortran -fpic -g -O2 -fstack-protector-strong -c penalty.f -o penalty.o build 03-Oct-2018 12:17:07 gfortran -fpic -g -O2 -fstack-protector-strong -c powell.f -o powell.o build 03-Oct-2018 12:17:07 gfortran -fpic -g -O2 -fstack-protector-strong -c rls.f -o rls.o build 03-Oct-2018 12:17:07 gfortran -fpic -g -O2 -fstack-protector-strong -c rq0.f -o rq0.o build 03-Oct-2018 12:17:07 gfortran -fpic -g -O2 -fstack-protector-strong -c rq1.f -o rq1.o build 03-Oct-2018 12:17:08 gfortran -fpic -g -O2 -fstack-protector-strong -c rqbr.f -o rqbr.o build 03-Oct-2018 12:17:08 gfortran -fpic -g -O2 -fstack-protector-strong -c rqfn.f -o rqfn.o build 03-Oct-2018 12:17:08 gfortran -fpic -g -O2 -fstack-protector-strong -c rqfnb.f -o rqfnb.o build 03-Oct-2018 12:17:08 gfortran -fpic -g -O2 -fstack-protector-strong -c rqfnc.f -o rqfnc.o build 03-Oct-2018 12:17:09 gfortran -fpic -g -O2 -fstack-protector-strong -c rqs.f -o rqs.o build 03-Oct-2018 12:17:09 gfortran -fpic -g -O2 -fstack-protector-strong -c sparskit2.f -o sparskit2.o build 03-Oct-2018 12:17:09 gfortran -fpic -g -O2 -fstack-protector-strong -c srqfn.f -o srqfn.o build 03-Oct-2018 12:17:09 gfortran -fpic -g -O2 -fstack-protector-strong -c srqfnc.f -o srqfnc.o build 03-Oct-2018 12:17:09 gfortran -fpic -g -O2 -fstack-protector-strong -c srtpai.f -o srtpai.o build 03-Oct-2018 12:17:09 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o quantreg.so akj.o boot.o bound.o boundc.o brute.o chlfct.o cholesky.o combos.o crq.o crqfnb.o dsel05.o etime.o extract.o idmin.o init.o iswap.o kuantile.o mcmb.o penalty.o powell.o rls.o rq0.o rq1.o rqbr.o rqfn.o rqfnb.o rqfnc.o rqs.o sparskit2.o srqfn.o srqfnc.o srtpai.o -llapack -lblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR build 03-Oct-2018 12:17:09 installing to /usr/local/lib/R/site-library/quantreg/libs build 03-Oct-2018 12:17:09 ** R build 03-Oct-2018 12:17:09 ** data build 03-Oct-2018 12:17:09 ** demo build 03-Oct-2018 12:17:09 ** inst build 03-Oct-2018 12:17:09 ** preparing package for lazy loading build 03-Oct-2018 12:17:11 ** help build 03-Oct-2018 12:17:11 *** installing help indices build 03-Oct-2018 12:17:11 ** building package indices build 03-Oct-2018 12:17:11 ** installing vignettes build 03-Oct-2018 12:17:11 ** testing if installed package can be loaded build 03-Oct-2018 12:17:13 * DONE (quantreg) build 03-Oct-2018 12:17:13 * installing *source* package 'svglite' ... build 03-Oct-2018 12:17:13 ** package 'svglite' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:17:13 ** libs build 03-Oct-2018 12:17:13 g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/gdtools/include" -I"/usr/local/lib/R/site-library/BH/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o build 03-Oct-2018 12:17:17 g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/gdtools/include" -I"/usr/local/lib/R/site-library/BH/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devSVG.cpp -o devSVG.o build 03-Oct-2018 12:17:22 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o svglite.so RcppExports.o devSVG.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:17:22 installing to /usr/local/lib/R/site-library/svglite/libs build 03-Oct-2018 12:17:22 ** R build 03-Oct-2018 12:17:22 ** inst build 03-Oct-2018 12:17:22 ** preparing package for lazy loading build 03-Oct-2018 12:17:22 ** help build 03-Oct-2018 12:17:22 *** installing help indices build 03-Oct-2018 12:17:22 ** building package indices build 03-Oct-2018 12:17:22 ** installing vignettes build 03-Oct-2018 12:17:22 ** testing if installed package can be loaded build 03-Oct-2018 12:17:22 * DONE (svglite) build 03-Oct-2018 12:17:24 * installing *source* package 'mapdata' ... build 03-Oct-2018 12:17:24 ** package 'mapdata' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:17:24 checking for gawk... no build 03-Oct-2018 12:17:24 checking for mawk... mawk build 03-Oct-2018 12:17:24 configure: creating ./config.status build 03-Oct-2018 12:17:24 config.status: creating src/Makefile build 03-Oct-2018 12:17:24 ** libs build 03-Oct-2018 12:17:24 ** arch - build 03-Oct-2018 12:17:24 make -f "/usr/lib/R/etc/Makeconf" -f Makefile Gmake build 03-Oct-2018 12:17:24 make[1]: Entering directory '/tmp/Rtmpvmtw46/R.INSTALL213960eb713d/mapdata/src' build 03-Oct-2018 12:17:24 gcc -std=gnu99 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wl,-Bsymbolic-functions -Wl,-z,relro Gmake.c -o Gmake build 03-Oct-2018 12:17:25 make[1]: Leaving directory '/tmp/Rtmpvmtw46/R.INSTALL213960eb713d/mapdata/src' build 03-Oct-2018 12:17:25 make -f "/usr/lib/R/etc/Makeconf" -f Makefile Lmake build 03-Oct-2018 12:17:25 make[1]: Entering directory '/tmp/Rtmpvmtw46/R.INSTALL213960eb713d/mapdata/src' build 03-Oct-2018 12:17:25 gcc -std=gnu99 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wl,-Bsymbolic-functions -Wl,-z,relro Lmake.c -o Lmake build 03-Oct-2018 12:17:25 make[1]: Leaving directory '/tmp/Rtmpvmtw46/R.INSTALL213960eb713d/mapdata/src' build 03-Oct-2018 12:17:25 make -f "/usr/lib/R/etc/Makeconf" -f Makefile world2Lores.line world2Hires.line build 03-Oct-2018 12:17:25 make[1]: Entering directory '/tmp/Rtmpvmtw46/R.INSTALL213960eb713d/mapdata/src' build 03-Oct-2018 12:17:25 Converting worldLores to world2Lores build 03-Oct-2018 12:17:25 mawk -f ./convert.awk < worldLores.line > world2Lores.line build 03-Oct-2018 12:17:25 Converting worldHires to world2Hires build 03-Oct-2018 12:17:25 mawk -f ./convert.awk < worldHires.line > world2Hires.line build 03-Oct-2018 12:17:28 make[1]: Leaving directory '/tmp/Rtmpvmtw46/R.INSTALL213960eb713d/mapdata/src' build 03-Oct-2018 12:17:28 make -f "/usr/lib/R/etc/Makeconf" -f Makefile china.L japan.L nzHires.L rivers.L worldHires.L world2Hires.L worldLores.L world2Lores.L build 03-Oct-2018 12:17:28 make[1]: Entering directory '/tmp/Rtmpvmtw46/R.INSTALL213960eb713d/mapdata/src' build 03-Oct-2018 12:17:28 ./Lmake 0 s b china.line china.linestats ../inst/mapdata/china.L build 03-Oct-2018 12:17:28 ./Lmake 0 s b japan.line japan.linestats ../inst/mapdata/japan.L build 03-Oct-2018 12:17:28 ./Lmake 0 s b nzHires.line nzHires.linestats ../inst/mapdata/nzHires.L build 03-Oct-2018 12:17:28 ./Lmake 0 s b rivers.line rivers.linestats ../inst/mapdata/rivers.L build 03-Oct-2018 12:17:28 ./Lmake 0 s b worldHires.line worldHires.linestats ../inst/mapdata/worldHires.L build 03-Oct-2018 12:17:29 ./Lmake 0 s b world2Hires.line world2Hires.linestats ../inst/mapdata/world2Hires.L build 03-Oct-2018 12:17:30 ./Lmake 0 s b worldLores.line worldLores.linestats ../inst/mapdata/worldLores.L build 03-Oct-2018 12:17:30 ./Lmake 0 s b world2Lores.line world2Lores.linestats ../inst/mapdata/world2Lores.L build 03-Oct-2018 12:17:30 make[1]: Leaving directory '/tmp/Rtmpvmtw46/R.INSTALL213960eb713d/mapdata/src' build 03-Oct-2018 12:17:30 make -f "/usr/lib/R/etc/Makeconf" -f Makefile china.G japan.G nzHires.G rivers.G worldHires.G world2Hires.G worldLores.G world2Lores.G build 03-Oct-2018 12:17:30 make[1]: Entering directory '/tmp/Rtmpvmtw46/R.INSTALL213960eb713d/mapdata/src' build 03-Oct-2018 12:17:30 ./Gmake b china.gon china.gonstats ../inst/mapdata/china.G ../inst/mapdata/china.L build 03-Oct-2018 12:17:30 ./Gmake b japan.gon japan.gonstats ../inst/mapdata/japan.G ../inst/mapdata/japan.L build 03-Oct-2018 12:17:30 ./Gmake b nzHires.gon nzHires.gonstats ../inst/mapdata/nzHires.G ../inst/mapdata/nzHires.L build 03-Oct-2018 12:17:30 ./Gmake b rivers.gon rivers.gonstats ../inst/mapdata/rivers.G ../inst/mapdata/rivers.L build 03-Oct-2018 12:17:30 ./Gmake b worldHires.gon worldHires.gonstats ../inst/mapdata/worldHires.G ../inst/mapdata/worldHires.L build 03-Oct-2018 12:17:30 ./Gmake b world2Hires.gon world2Hires.gonstats ../inst/mapdata/world2Hires.G ../inst/mapdata/world2Hires.L build 03-Oct-2018 12:17:30 ./Gmake b worldLores.gon worldLores.gonstats ../inst/mapdata/worldLores.G ../inst/mapdata/worldLores.L build 03-Oct-2018 12:17:30 ./Gmake b world2Lores.gon world2Lores.gonstats ../inst/mapdata/world2Lores.G ../inst/mapdata/world2Lores.L build 03-Oct-2018 12:17:30 make[1]: Leaving directory '/tmp/Rtmpvmtw46/R.INSTALL213960eb713d/mapdata/src' build 03-Oct-2018 12:17:30 make -f "/usr/lib/R/etc/Makeconf" -f Makefile china.N japan.N nzHires.N rivers.N worldHires.N world2Hires.N worldLores.N world2Lores.N build 03-Oct-2018 12:17:30 make[1]: Entering directory '/tmp/Rtmpvmtw46/R.INSTALL213960eb713d/mapdata/src' build 03-Oct-2018 12:17:30 make[1]: Leaving directory '/tmp/Rtmpvmtw46/R.INSTALL213960eb713d/mapdata/src' build 03-Oct-2018 12:17:30 ** R build 03-Oct-2018 12:17:30 ** data build 03-Oct-2018 12:17:30 *** moving datasets to lazyload DB build 03-Oct-2018 12:17:30 ** inst build 03-Oct-2018 12:17:30 ** preparing package for lazy loading build 03-Oct-2018 12:17:30 ** help build 03-Oct-2018 12:17:30 *** installing help indices build 03-Oct-2018 12:17:30 ** building package indices build 03-Oct-2018 12:17:30 ** testing if installed package can be loaded build 03-Oct-2018 12:17:30 * DONE (mapdata) build 03-Oct-2018 12:17:31 * installing *source* package 'xts' ... build 03-Oct-2018 12:17:31 ** package 'xts' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:17:31 ** libs build 03-Oct-2018 12:17:31 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -I"/usr/local/lib/R/site-library/zoo/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c add_class.c -o add_class.o build 03-Oct-2018 12:17:31 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -I"/usr/local/lib/R/site-library/zoo/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c any.c -o any.o build 03-Oct-2018 12:17:31 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -I"/usr/local/lib/R/site-library/zoo/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c attr.c -o attr.o build 03-Oct-2018 12:17:31 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -I"/usr/local/lib/R/site-library/zoo/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c binsearch.c -o binsearch.o build 03-Oct-2018 12:17:31 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -I"/usr/local/lib/R/site-library/zoo/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coredata.c -o coredata.o build 03-Oct-2018 12:17:31 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -I"/usr/local/lib/R/site-library/zoo/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c diff.c -o diff.o build 03-Oct-2018 12:17:31 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -I"/usr/local/lib/R/site-library/zoo/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dimnames.c -o dimnames.o build 03-Oct-2018 12:17:31 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -I"/usr/local/lib/R/site-library/zoo/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c endpoints.c -o endpoints.o build 03-Oct-2018 12:17:32 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -I"/usr/local/lib/R/site-library/zoo/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c extract_col.c -o extract_col.o build 03-Oct-2018 12:17:32 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -I"/usr/local/lib/R/site-library/zoo/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:17:32 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -I"/usr/local/lib/R/site-library/zoo/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c isOrdered.c -o isOrdered.o build 03-Oct-2018 12:17:32 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -I"/usr/local/lib/R/site-library/zoo/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c isXts.c -o isXts.o build 03-Oct-2018 12:17:32 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -I"/usr/local/lib/R/site-library/zoo/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c merge.c -o merge.o build 03-Oct-2018 12:17:32 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -I"/usr/local/lib/R/site-library/zoo/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c na.c -o na.o build 03-Oct-2018 12:17:33 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -I"/usr/local/lib/R/site-library/zoo/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c period_apply.c -o period_apply.o build 03-Oct-2018 12:17:33 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -I"/usr/local/lib/R/site-library/zoo/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c period_arithmetic.c -o period_arithmetic.o build 03-Oct-2018 12:17:33 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -I"/usr/local/lib/R/site-library/zoo/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c period_quantile.c -o period_quantile.o build 03-Oct-2018 12:17:33 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -I"/usr/local/lib/R/site-library/zoo/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rbind.c -o rbind.o build 03-Oct-2018 12:17:33 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -I"/usr/local/lib/R/site-library/zoo/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rollfun.c -o rollfun.o build 03-Oct-2018 12:17:33 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -I"/usr/local/lib/R/site-library/zoo/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c runSum.c -o runSum.o build 03-Oct-2018 12:17:33 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -I"/usr/local/lib/R/site-library/zoo/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c startofyear.c -o startofyear.o build 03-Oct-2018 12:17:33 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -I"/usr/local/lib/R/site-library/zoo/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c subset.c -o subset.o build 03-Oct-2018 12:17:34 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -I"/usr/local/lib/R/site-library/zoo/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c subset.old.c -o subset.old.o build 03-Oct-2018 12:17:34 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -I"/usr/local/lib/R/site-library/zoo/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c toperiod.c -o toperiod.o build 03-Oct-2018 12:17:34 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -I"/usr/local/lib/R/site-library/zoo/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c totalcols.c -o totalcols.o build 03-Oct-2018 12:17:34 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -I"/usr/local/lib/R/site-library/zoo/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tryXts.c -o tryXts.o build 03-Oct-2018 12:17:34 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -I"/usr/local/lib/R/site-library/zoo/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unique.time.c -o unique.time.o build 03-Oct-2018 12:17:34 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o xts.so add_class.o any.o attr.o binsearch.o coredata.o diff.o dimnames.o endpoints.o extract_col.o init.o isOrdered.o isXts.o merge.o na.o period_apply.o period_arithmetic.o period_quantile.o rbind.o rollfun.o runSum.o startofyear.o subset.o subset.old.o toperiod.o totalcols.o tryXts.o unique.time.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:17:34 installing to /usr/local/lib/R/site-library/xts/libs build 03-Oct-2018 12:17:34 ** R build 03-Oct-2018 12:17:34 ** data build 03-Oct-2018 12:17:34 ** inst build 03-Oct-2018 12:17:34 ** preparing package for lazy loading build 03-Oct-2018 12:17:34 ** help build 03-Oct-2018 12:17:34 *** installing help indices build 03-Oct-2018 12:17:35 ** building package indices build 03-Oct-2018 12:17:35 ** installing vignettes build 03-Oct-2018 12:17:35 ** testing if installed package can be loaded build 03-Oct-2018 12:17:35 * DONE (xts) build 03-Oct-2018 12:17:35 * installing *source* package 'bindrcpp' ... build 03-Oct-2018 12:17:35 ** package 'bindrcpp' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:17:35 ** libs build 03-Oct-2018 12:17:35 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -I. -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o build 03-Oct-2018 12:17:39 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -I. -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c create.cpp -o create.o build 03-Oct-2018 12:17:43 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -I. -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plogr.cpp -o plogr.o build 03-Oct-2018 12:17:43 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -I. -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c test.cpp -o test.o build 03-Oct-2018 12:17:47 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o bindrcpp.so RcppExports.o create.o plogr.o test.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:17:47 installing to /usr/local/lib/R/site-library/bindrcpp/libs build 03-Oct-2018 12:17:47 ** R build 03-Oct-2018 12:17:47 ** inst build 03-Oct-2018 12:17:47 ** preparing package for lazy loading build 03-Oct-2018 12:17:47 ** help build 03-Oct-2018 12:17:47 *** installing help indices build 03-Oct-2018 12:17:47 ** building package indices build 03-Oct-2018 12:17:47 ** testing if installed package can be loaded build 03-Oct-2018 12:17:48 * DONE (bindrcpp) build 03-Oct-2018 12:17:48 * installing *source* package 'tidyselect' ... build 03-Oct-2018 12:17:48 ** package 'tidyselect' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:17:48 ** libs build 03-Oct-2018 12:17:48 g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o build 03-Oct-2018 12:17:51 g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c combine_variables.cpp -o combine_variables.o build 03-Oct-2018 12:17:55 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o tidyselect.so RcppExports.o combine_variables.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:17:55 installing to /usr/local/lib/R/site-library/tidyselect/libs build 03-Oct-2018 12:17:55 ** R build 03-Oct-2018 12:17:55 ** byte-compile and prepare package for lazy loading build 03-Oct-2018 12:17:55 ** help build 03-Oct-2018 12:17:55 *** installing help indices build 03-Oct-2018 12:17:55 ** building package indices build 03-Oct-2018 12:17:56 ** testing if installed package can be loaded build 03-Oct-2018 12:17:56 * DONE (tidyselect) build 03-Oct-2018 12:17:56 * installing *source* package 'bit64' ... build 03-Oct-2018 12:17:56 ** package 'bit64' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:17:56 ** libs build 03-Oct-2018 12:17:56 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bsearch.c -o bsearch.o build 03-Oct-2018 12:17:57 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cache.c -o cache.o build 03-Oct-2018 12:17:57 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hash64.c -o hash64.o build 03-Oct-2018 12:17:57 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:17:57 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c integer64.c -o integer64.o build 03-Oct-2018 12:17:58 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sort64.c -o sort64.o build 03-Oct-2018 12:17:58 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sortuse64.c -o sortuse64.o build 03-Oct-2018 12:17:59 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o bit64.so bsearch.o cache.o hash64.o init.o integer64.o sort64.o sortuse64.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:17:59 installing to /usr/local/lib/R/site-library/bit64/libs build 03-Oct-2018 12:17:59 ** R build 03-Oct-2018 12:17:59 ** data build 03-Oct-2018 12:17:59 ** exec build 03-Oct-2018 12:17:59 ** inst build 03-Oct-2018 12:17:59 ** byte-compile and prepare package for lazy loading build 03-Oct-2018 12:18:00 ** help build 03-Oct-2018 12:18:01 *** installing help indices build 03-Oct-2018 12:18:01 ** building package indices build 03-Oct-2018 12:18:01 ** testing if installed package can be loaded build 03-Oct-2018 12:18:01 * DONE (bit64) build 03-Oct-2018 12:18:01 * installing *source* package 'hms' ... build 03-Oct-2018 12:18:01 ** package 'hms' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:18:01 ** R build 03-Oct-2018 12:18:01 ** preparing package for lazy loading build 03-Oct-2018 12:18:01 ** help build 03-Oct-2018 12:18:01 *** installing help indices build 03-Oct-2018 12:18:01 ** building package indices build 03-Oct-2018 12:18:02 ** testing if installed package can be loaded build 03-Oct-2018 12:18:02 * DONE (hms) build 03-Oct-2018 12:18:02 * installing *source* package 'RMySQL' ... build 03-Oct-2018 12:18:02 ** package 'RMySQL' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:18:02 Found mysql_config cflags and libs! build 03-Oct-2018 12:18:02 Using PKG_CFLAGS=-I/usr/include/mariadb -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wunused -Wno-uninitialized build 03-Oct-2018 12:18:02 Using PKG_LIBS=-L/usr/lib/x86_64-linux-gnu -lmariadb build 03-Oct-2018 12:18:02 ** libs build 03-Oct-2018 12:18:02 rm -f RMySQL.so RMySQL-init.o connection.o db-apply.o driver.o exception.o fields.o result.o utils.o build 03-Oct-2018 12:18:02 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include/mariadb -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wunused -Wno-uninitialized -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RMySQL-init.c -o RMySQL-init.o build 03-Oct-2018 12:18:02 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include/mariadb -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wunused -Wno-uninitialized -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c connection.c -o connection.o build 03-Oct-2018 12:18:02 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include/mariadb -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wunused -Wno-uninitialized -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c db-apply.c -o db-apply.o build 03-Oct-2018 12:18:02 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include/mariadb -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wunused -Wno-uninitialized -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c driver.c -o driver.o build 03-Oct-2018 12:18:02 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include/mariadb -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wunused -Wno-uninitialized -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c exception.c -o exception.o build 03-Oct-2018 12:18:03 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include/mariadb -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wunused -Wno-uninitialized -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fields.c -o fields.o build 03-Oct-2018 12:18:03 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include/mariadb -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wunused -Wno-uninitialized -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c result.c -o result.o build 03-Oct-2018 12:18:03 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include/mariadb -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wunused -Wno-uninitialized -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o build 03-Oct-2018 12:18:03 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o RMySQL.so RMySQL-init.o connection.o db-apply.o driver.o exception.o fields.o result.o utils.o -L/usr/lib/x86_64-linux-gnu -lmariadb -L/usr/lib/R/lib -lR build 03-Oct-2018 12:18:03 installing to /usr/local/lib/R/site-library/RMySQL/libs build 03-Oct-2018 12:18:03 ** R build 03-Oct-2018 12:18:03 ** preparing package for lazy loading build 03-Oct-2018 12:18:03 ** help build 03-Oct-2018 12:18:03 *** installing help indices build 03-Oct-2018 12:18:03 ** building package indices build 03-Oct-2018 12:18:03 ** testing if installed package can be loaded build 03-Oct-2018 12:18:04 * DONE (RMySQL) build 03-Oct-2018 12:18:04 * installing *source* package 'RPostgreSQL' ... build 03-Oct-2018 12:18:04 ** package 'RPostgreSQL' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:18:04 checking for gcc... gcc build 03-Oct-2018 12:18:04 checking for C compiler default output file name... a.out build 03-Oct-2018 12:18:04 checking whether the C compiler works... yes build 03-Oct-2018 12:18:04 checking whether we are cross compiling... no build 03-Oct-2018 12:18:04 checking for suffix of executables... build 03-Oct-2018 12:18:04 checking for suffix of object files... o build 03-Oct-2018 12:18:04 checking whether we are using the GNU C compiler... yes build 03-Oct-2018 12:18:04 checking whether gcc accepts -g... yes build 03-Oct-2018 12:18:05 checking for gcc option to accept ISO C89... none needed build 03-Oct-2018 12:18:05 checking build system type... x86_64-unknown-linux-gnu build 03-Oct-2018 12:18:05 checking host system type... x86_64-unknown-linux-gnu build 03-Oct-2018 12:18:05 checking target system type... x86_64-unknown-linux-gnu build 03-Oct-2018 12:18:05 checking for pg_config... no build 03-Oct-2018 12:18:05 configure: checking for PostgreSQL header files build 03-Oct-2018 12:18:05 configure: Checking include /usr/include. build 03-Oct-2018 12:18:05 configure: Checking include /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.8.sdk/usr/include. build 03-Oct-2018 12:18:05 configure: Checking include /usr/include/pgsql. build 03-Oct-2018 12:18:05 configure: Checking include /usr/include/postgresql. build 03-Oct-2018 12:18:05 configure: Checking include /usr/local/include. build 03-Oct-2018 12:18:05 configure: Checking include /usr/local/include/pgsql. build 03-Oct-2018 12:18:05 configure: Checking include /usr/local/include/postgresql. build 03-Oct-2018 12:18:05 configure: Checking include /usr/local/pgsql/include. build 03-Oct-2018 12:18:05 configure: Checking include /usr/local/postgresql/include. build 03-Oct-2018 12:18:05 configure: Checking include /opt/include. build 03-Oct-2018 12:18:05 configure: Checking include /opt/include/pgsql. build 03-Oct-2018 12:18:05 configure: Checking include /opt/include/postgresql. build 03-Oct-2018 12:18:05 configure: Checking include /opt/local/include. build 03-Oct-2018 12:18:05 configure: Checking include /opt/local/include/postgresql. build 03-Oct-2018 12:18:05 configure: Checking include /sw/include/postgresql. build 03-Oct-2018 12:18:05 configure: Checking lib /usr/lib. build 03-Oct-2018 12:18:05 configure: Checking lib /usr/lib/pgsql. build 03-Oct-2018 12:18:05 configure: Checking lib /usr/lib/postgresql. build 03-Oct-2018 12:18:05 configure: Checking lib /usr/local/lib. build 03-Oct-2018 12:18:05 configure: Checking lib /usr/local/lib/pgsql. build 03-Oct-2018 12:18:05 configure: Checking lib /usr/local/lib/postgresql. build 03-Oct-2018 12:18:05 configure: Checking lib /usr/local/pgsql/lib. build 03-Oct-2018 12:18:05 configure: Checking lib /usr/local/postgresql/lib. build 03-Oct-2018 12:18:05 configure: Checking lib /opt/lib. build 03-Oct-2018 12:18:05 configure: Checking lib /opt/lib/pgsql. build 03-Oct-2018 12:18:05 configure: Checking lib /opt/lib/postgresql. build 03-Oct-2018 12:18:05 configure: Checking lib /opt/local/lib. build 03-Oct-2018 12:18:05 configure: Checking lib /opt/local/lib/postgresql. build 03-Oct-2018 12:18:05 configure: Checking lib /sw/lib. build 03-Oct-2018 12:18:05 configure: Using internal package libpq-fe.h build 03-Oct-2018 12:18:05 checking for "src/libpq/libpq-fe.h"... yes build 03-Oct-2018 12:18:05 configure: creating ./config.status build 03-Oct-2018 12:18:05 config.status: creating src/Makevars build 03-Oct-2018 12:18:05 ** libs build 03-Oct-2018 12:18:05 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Isrc/libpq -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RS-DBI.c -o RS-DBI.o build 03-Oct-2018 12:18:05 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Isrc/libpq -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RS-PQescape.c -o RS-PQescape.o build 03-Oct-2018 12:18:05 In file included from RS-PQescape.c:7:0: build 03-Oct-2018 12:18:05 RS-PostgreSQL.h:23:26: fatal error: libpq-fe.h: No such file or directory build 03-Oct-2018 12:18:05 compilation terminated. build 03-Oct-2018 12:18:05 /usr/lib/R/etc/Makeconf:134: recipe for target 'RS-PQescape.o' failed build 03-Oct-2018 12:18:05 make: *** [RS-PQescape.o] Error 1 build 03-Oct-2018 12:18:05 ERROR: compilation failed for package 'RPostgreSQL' build 03-Oct-2018 12:18:05 * removing '/usr/local/lib/R/site-library/RPostgreSQL' build 03-Oct-2018 12:18:05 * installing *source* package 'RgoogleMaps' ... build 03-Oct-2018 12:18:05 ** package 'RgoogleMaps' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:18:05 ** R build 03-Oct-2018 12:18:05 ** data build 03-Oct-2018 12:18:05 ** inst build 03-Oct-2018 12:18:05 ** preparing package for lazy loading build 03-Oct-2018 12:18:05 ** help build 03-Oct-2018 12:18:06 *** installing help indices build 03-Oct-2018 12:18:06 ** building package indices build 03-Oct-2018 12:18:06 ** testing if installed package can be loaded build 03-Oct-2018 12:18:06 * DONE (RgoogleMaps) build 03-Oct-2018 12:18:06 * installing *source* package 'geosphere' ... build 03-Oct-2018 12:18:06 ** package 'geosphere' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:18:06 ** libs build 03-Oct-2018 12:18:06 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dist.c -o dist.o build 03-Oct-2018 12:18:06 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c geodesic.c -o geodesic.o build 03-Oct-2018 12:18:07 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c geolib.c -o geolib.o build 03-Oct-2018 12:18:07 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c geosphere_init.c -o geosphere_init.o build 03-Oct-2018 12:18:07 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o build 03-Oct-2018 12:18:07 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o geosphere.so dist.o geodesic.o geolib.o geosphere_init.o util.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:18:07 installing to /usr/local/lib/R/site-library/geosphere/libs build 03-Oct-2018 12:18:07 ** R build 03-Oct-2018 12:18:07 ** data build 03-Oct-2018 12:18:07 ** inst build 03-Oct-2018 12:18:07 ** preparing package for lazy loading build 03-Oct-2018 12:18:07 ** help build 03-Oct-2018 12:18:08 *** installing help indices build 03-Oct-2018 12:18:08 ** building package indices build 03-Oct-2018 12:18:08 ** installing vignettes build 03-Oct-2018 12:18:08 ** testing if installed package can be loaded build 03-Oct-2018 12:18:08 * DONE (geosphere) build 03-Oct-2018 12:18:08 * installing *source* package 'gbm' ... build 03-Oct-2018 12:18:08 ** package 'gbm' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:18:08 ** libs build 03-Oct-2018 12:18:08 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c adaboost.cpp -o adaboost.o build 03-Oct-2018 12:18:09 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bernoulli.cpp -o bernoulli.o build 03-Oct-2018 12:18:09 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coxph.cpp -o coxph.o build 03-Oct-2018 12:18:10 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dataset.cpp -o dataset.o build 03-Oct-2018 12:18:10 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c distribution.cpp -o distribution.o build 03-Oct-2018 12:18:10 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gaussian.cpp -o gaussian.o build 03-Oct-2018 12:18:10 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gbm-init.c -o gbm-init.o build 03-Oct-2018 12:18:10 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gbm.cpp -o gbm.o build 03-Oct-2018 12:18:10 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gbm_engine.cpp -o gbm_engine.o build 03-Oct-2018 12:18:11 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gbmentry.cpp -o gbmentry.o build 03-Oct-2018 12:18:11 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c huberized.cpp -o huberized.o build 03-Oct-2018 12:18:11 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c laplace.cpp -o laplace.o build 03-Oct-2018 12:18:11 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c locationm.cpp -o locationm.o build 03-Oct-2018 12:18:12 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c multinomial.cpp -o multinomial.o build 03-Oct-2018 12:18:12 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c node.cpp -o node.o build 03-Oct-2018 12:18:12 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c node_categorical.cpp -o node_categorical.o build 03-Oct-2018 12:18:13 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c node_continuous.cpp -o node_continuous.o build 03-Oct-2018 12:18:13 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c node_factory.cpp -o node_factory.o build 03-Oct-2018 12:18:13 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c node_nonterminal.cpp -o node_nonterminal.o build 03-Oct-2018 12:18:13 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c node_search.cpp -o node_search.o build 03-Oct-2018 12:18:14 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c node_terminal.cpp -o node_terminal.o build 03-Oct-2018 12:18:14 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pairwise.cpp -o pairwise.o build 03-Oct-2018 12:18:15 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c poisson.cpp -o poisson.o build 03-Oct-2018 12:18:15 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c quantile.cpp -o quantile.o build 03-Oct-2018 12:18:15 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tdist.cpp -o tdist.o build 03-Oct-2018 12:18:15 g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tree.cpp -o tree.o build 03-Oct-2018 12:18:16 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o gbm.so adaboost.o bernoulli.o coxph.o dataset.o distribution.o gaussian.o gbm-init.o gbm.o gbm_engine.o gbmentry.o huberized.o laplace.o locationm.o multinomial.o node.o node_categorical.o node_continuous.o node_factory.o node_nonterminal.o node_search.o node_terminal.o pairwise.o poisson.o quantile.o tdist.o tree.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:18:16 installing to /usr/local/lib/R/site-library/gbm/libs build 03-Oct-2018 12:18:16 ** R build 03-Oct-2018 12:18:16 ** demo build 03-Oct-2018 12:18:16 ** inst build 03-Oct-2018 12:18:16 ** preparing package for lazy loading build 03-Oct-2018 12:18:17 ** help build 03-Oct-2018 12:18:17 *** installing help indices build 03-Oct-2018 12:18:17 ** building package indices build 03-Oct-2018 12:18:17 ** installing vignettes build 03-Oct-2018 12:18:17 ** testing if installed package can be loaded build 03-Oct-2018 12:18:18 * DONE (gbm) build 03-Oct-2018 12:18:19 * installing *source* package 'spam' ... build 03-Oct-2018 12:18:19 ** package 'spam' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:18:19 ** libs build 03-Oct-2018 12:18:19 gfortran -fpic -g -O2 -fstack-protector-strong -c bckslvmodified.f -o bckslvmodified.o build 03-Oct-2018 12:18:19 gfortran -fpic -g -O2 -fstack-protector-strong -c cholmodified.f -o cholmodified.o build 03-Oct-2018 12:18:20 gfortran -fpic -g -O2 -fstack-protector-strong -c dgetv0.f -o dgetv0.o build 03-Oct-2018 12:18:20 gfortran -fpic -g -O2 -fstack-protector-strong -c dist.f -o dist.o build 03-Oct-2018 12:18:20 gfortran -fpic -g -O2 -fstack-protector-strong -c dn_ARPACK.f -o dn_ARPACK.o build 03-Oct-2018 12:18:21 gfortran -fpic -g -O2 -fstack-protector-strong -c dn_eigen.f -o dn_eigen.o build 03-Oct-2018 12:18:21 gfortran -fpic -g -O2 -fstack-protector-strong -c ds_ARPACK.f -o ds_ARPACK.o build 03-Oct-2018 12:18:21 gfortran -fpic -g -O2 -fstack-protector-strong -c ds_eigen.f -o ds_eigen.o build 03-Oct-2018 12:18:22 gfortran -fpic -g -O2 -fstack-protector-strong -c errpr.f -o errpr.o build 03-Oct-2018 12:18:22 gfortran -fpic -g -O2 -fstack-protector-strong -c fromsparsekit.f -o fromsparsekit.o build 03-Oct-2018 12:18:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:18:22 gfortran -fpic -g -O2 -fstack-protector-strong -c kronecker.f -o kronecker.o build 03-Oct-2018 12:18:22 gfortran -fpic -g -O2 -fstack-protector-strong -c permutation.f -o permutation.o build 03-Oct-2018 12:18:22 gfortran -fpic -g -O2 -fstack-protector-strong -c rowcolstats.f -o rowcolstats.o build 03-Oct-2018 12:18:22 gfortran -fpic -g -O2 -fstack-protector-strong -c second.f -o second.o build 03-Oct-2018 12:18:22 gfortran -fpic -g -O2 -fstack-protector-strong -c spamown.f -o spamown.o build 03-Oct-2018 12:18:23 gfortran -fpic -g -O2 -fstack-protector-strong -c spamown2.f -o spamown2.o build 03-Oct-2018 12:18:23 gfortran -fpic -g -O2 -fstack-protector-strong -c xybind.f -o xybind.o build 03-Oct-2018 12:18:23 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o spam.so bckslvmodified.o cholmodified.o dgetv0.o dist.o dn_ARPACK.o dn_eigen.o ds_ARPACK.o ds_eigen.o errpr.o fromsparsekit.o init.o kronecker.o permutation.o rowcolstats.o second.o spamown.o spamown2.o xybind.o -llapack -lblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR build 03-Oct-2018 12:18:23 installing to /usr/local/lib/R/site-library/spam/libs build 03-Oct-2018 12:18:23 ** R build 03-Oct-2018 12:18:23 ** data build 03-Oct-2018 12:18:23 *** moving datasets to lazyload DB build 03-Oct-2018 12:18:23 ** demo build 03-Oct-2018 12:18:23 ** inst build 03-Oct-2018 12:18:23 ** preparing package for lazy loading build 03-Oct-2018 12:18:23 Creating a generic function for 'print' from package 'base' in package 'spam' build 03-Oct-2018 12:18:23 Creating a generic function for 'diag' from package 'base' in package 'spam' build 03-Oct-2018 12:18:23 Creating a generic function for 'diag<-' from package 'base' in package 'spam' build 03-Oct-2018 12:18:23 Creating a generic function for 't' from package 'base' in package 'spam' build 03-Oct-2018 12:18:23 Creating a generic function for 'as.matrix' from package 'base' in package 'spam' build 03-Oct-2018 12:18:23 Creating a generic function for 'as.vector' from package 'base' in package 'spam' build 03-Oct-2018 12:18:23 Creating a generic function for 'all.equal' from package 'base' in package 'spam' build 03-Oct-2018 12:18:23 Creating a generic function for 'isSymmetric' from package 'base' in package 'spam' build 03-Oct-2018 12:18:23 Creating a generic function for 'diff' from package 'base' in package 'spam' build 03-Oct-2018 12:18:23 Creating a generic function for 'norm' from package 'base' in package 'spam' build 03-Oct-2018 12:18:23 Creating a generic function for 'image' from package 'graphics' in package 'spam' build 03-Oct-2018 12:18:24 Creating a generic function for 'plot' from package 'graphics' in package 'spam' build 03-Oct-2018 12:18:24 Creating a generic function for 'rowSums' from package 'base' in package 'spam' build 03-Oct-2018 12:18:24 Creating a generic function for 'colSums' from package 'base' in package 'spam' build 03-Oct-2018 12:18:24 Creating a generic function for 'rowMeans' from package 'base' in package 'spam' build 03-Oct-2018 12:18:24 Creating a generic function for 'colMeans' from package 'base' in package 'spam' build 03-Oct-2018 12:18:24 Creating a new generic function for 'backsolve' in package 'spam' build 03-Oct-2018 12:18:24 Creating a new generic function for 'forwardsolve' in package 'spam' build 03-Oct-2018 12:18:24 Creating a generic function for 'chol' from package 'base' in package 'spam' build 03-Oct-2018 12:18:24 Creating a generic function for 'solve' from package 'base' in package 'spam' build 03-Oct-2018 12:18:24 Creating a generic function for 'chol2inv' from 'base' in package 'spam' build 03-Oct-2018 12:18:24 (from the saved implicit definition) build 03-Oct-2018 12:18:24 Creating a generic function for 'chol2inv' from package 'base' in package 'spam' build 03-Oct-2018 12:18:24 Creating a generic function for 'determinant' from package 'base' in package 'spam' build 03-Oct-2018 12:18:24 Creating a generic function for 'summary' from package 'base' in package 'spam' build 03-Oct-2018 12:18:24 Creating a generic function for 'head' from package 'utils' in package 'spam' build 03-Oct-2018 12:18:24 Creating a generic function for 'tail' from package 'utils' in package 'spam' build 03-Oct-2018 12:18:24 Creating a generic function for 'crossprod' from package 'base' in package 'spam' build 03-Oct-2018 12:18:24 Creating a generic function for 'tcrossprod' from package 'base' in package 'spam' build 03-Oct-2018 12:18:24 Creating a generic function for 'rbind' from package 'base' in package 'spam' build 03-Oct-2018 12:18:24 Creating a generic function for 'cbind' from package 'base' in package 'spam' build 03-Oct-2018 12:18:24 ** help build 03-Oct-2018 12:18:24 *** installing help indices build 03-Oct-2018 12:18:24 ** building package indices build 03-Oct-2018 12:18:24 ** installing vignettes build 03-Oct-2018 12:18:24 ** testing if installed package can be loaded build 03-Oct-2018 12:18:25 Warning in FUN(X[[i]], ...) : build 03-Oct-2018 12:18:25 failed to assign RegisteredNativeSymbol for toeplitz to toeplitz since toeplitz is already defined in the 'spam' namespace build 03-Oct-2018 12:18:25 * DONE (spam) build 03-Oct-2018 12:18:26 * installing *source* package 'ggplot2' ... build 03-Oct-2018 12:18:26 ** package 'ggplot2' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:18:27 ** R build 03-Oct-2018 12:18:27 ** data build 03-Oct-2018 12:18:27 *** moving datasets to lazyload DB build 03-Oct-2018 12:18:28 ** inst build 03-Oct-2018 12:18:28 ** preparing package for lazy loading build 03-Oct-2018 12:18:28 ** help build 03-Oct-2018 12:18:29 *** installing help indices build 03-Oct-2018 12:18:30 *** copying figures build 03-Oct-2018 12:18:30 ** building package indices build 03-Oct-2018 12:18:30 ** installing vignettes build 03-Oct-2018 12:18:30 ** testing if installed package can be loaded build 03-Oct-2018 12:18:30 * DONE (ggplot2) build 03-Oct-2018 12:18:31 * installing *source* package 'rgl' ... build 03-Oct-2018 12:18:31 ** package 'rgl' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:18:34 checking for gcc... gcc -std=gnu99 build 03-Oct-2018 12:18:34 checking whether the C compiler works... yes build 03-Oct-2018 12:18:34 checking for C compiler default output file name... a.out build 03-Oct-2018 12:18:34 checking for suffix of executables... build 03-Oct-2018 12:18:34 checking whether we are cross compiling... no build 03-Oct-2018 12:18:34 checking for suffix of object files... o build 03-Oct-2018 12:18:34 checking whether we are using the GNU C compiler... yes build 03-Oct-2018 12:18:34 checking whether gcc -std=gnu99 accepts -g... yes build 03-Oct-2018 12:18:34 checking for gcc -std=gnu99 option to accept ISO C89... none needed build 03-Oct-2018 12:18:34 checking how to run the C preprocessor... gcc -std=gnu99 -E build 03-Oct-2018 12:18:34 checking for gcc... (cached) gcc -std=gnu99 build 03-Oct-2018 12:18:34 checking whether we are using the GNU C compiler... (cached) yes build 03-Oct-2018 12:18:34 checking whether gcc -std=gnu99 accepts -g... (cached) yes build 03-Oct-2018 12:18:34 checking for gcc -std=gnu99 option to accept ISO C89... (cached) none needed build 03-Oct-2018 12:18:34 checking for libpng-config... yes build 03-Oct-2018 12:18:34 configure: using libpng-config build 03-Oct-2018 12:18:34 configure: using libpng dynamic linkage build 03-Oct-2018 12:18:34 checking for X... libraries , headers build 03-Oct-2018 12:18:34 checking GL/gl.h usability... yes build 03-Oct-2018 12:18:35 checking GL/gl.h presence... yes build 03-Oct-2018 12:18:35 checking for GL/gl.h... yes build 03-Oct-2018 12:18:35 checking GL/glu.h usability... yes build 03-Oct-2018 12:18:35 checking GL/glu.h presence... yes build 03-Oct-2018 12:18:35 checking for GL/glu.h... yes build 03-Oct-2018 12:18:35 checking for glEnd in -lGL... yes build 03-Oct-2018 12:18:35 checking for gluProject in -lGLU... yes build 03-Oct-2018 12:18:35 checking for pkg-config... yes build 03-Oct-2018 12:18:35 configure: using Freetype and FTGL build 03-Oct-2018 12:18:35 configure: creating ./config.status build 03-Oct-2018 12:18:35 config.status: creating src/Makevars build 03-Oct-2018 12:18:35 ** libs build 03-Oct-2018 12:18:35 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ABCLineSet.cpp -o ABCLineSet.o build 03-Oct-2018 12:18:35 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c BBoxDeco.cpp -o BBoxDeco.o build 03-Oct-2018 12:18:36 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Background.cpp -o Background.o build 03-Oct-2018 12:18:36 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ClipPlane.cpp -o ClipPlane.o build 03-Oct-2018 12:18:36 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Color.cpp -o Color.o build 03-Oct-2018 12:18:36 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Disposable.cpp -o Disposable.o build 03-Oct-2018 12:18:37 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Light.cpp -o Light.o build 03-Oct-2018 12:18:37 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c LineSet.cpp -o LineSet.o build 03-Oct-2018 12:18:37 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c LineStripSet.cpp -o LineStripSet.o build 03-Oct-2018 12:18:37 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Material.cpp -o Material.o build 03-Oct-2018 12:18:37 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c NULLgui.cpp -o NULLgui.o build 03-Oct-2018 12:18:38 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c PlaneSet.cpp -o PlaneSet.o build 03-Oct-2018 12:18:38 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c PointSet.cpp -o PointSet.o build 03-Oct-2018 12:18:38 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c PrimitiveSet.cpp -o PrimitiveSet.o build 03-Oct-2018 12:18:39 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RenderContext.cpp -o RenderContext.o build 03-Oct-2018 12:18:39 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Shape.cpp -o Shape.o build 03-Oct-2018 12:18:39 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SphereMesh.cpp -o SphereMesh.o build 03-Oct-2018 12:18:39 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SphereSet.cpp -o SphereSet.o build 03-Oct-2018 12:18:40 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SpriteSet.cpp -o SpriteSet.o build 03-Oct-2018 12:18:40 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c String.cpp -o String.o build 03-Oct-2018 12:18:40 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Surface.cpp -o Surface.o build 03-Oct-2018 12:18:40 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c TextSet.cpp -o TextSet.o build 03-Oct-2018 12:18:41 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Texture.cpp -o Texture.o build 03-Oct-2018 12:18:41 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Viewpoint.cpp -o Viewpoint.o build 03-Oct-2018 12:18:41 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c api.cpp -o api.o build 03-Oct-2018 12:18:42 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c assert.cpp -o assert.o build 03-Oct-2018 12:18:42 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c callbacks.cpp -o callbacks.o build 03-Oct-2018 12:18:42 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c device.cpp -o device.o build 03-Oct-2018 12:18:42 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devicemanager.cpp -o devicemanager.o build 03-Oct-2018 12:18:43 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fps.cpp -o fps.o build 03-Oct-2018 12:18:43 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ftgl.cpp -o ftgl.o build 03-Oct-2018 12:18:44 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c geom.cpp -o geom.o build 03-Oct-2018 12:18:44 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gl2ps.c -o gl2ps.o build 03-Oct-2018 12:18:46 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c glErrors.cpp -o glErrors.o build 03-Oct-2018 12:18:46 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c glgui.cpp -o glgui.o build 03-Oct-2018 12:18:46 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gui.cpp -o gui.o build 03-Oct-2018 12:18:47 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.cpp -o init.o build 03-Oct-2018 12:18:47 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c par3d.cpp -o par3d.o build 03-Oct-2018 12:18:47 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pixmap.cpp -o pixmap.o build 03-Oct-2018 12:18:47 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c platform.cpp -o platform.o build 03-Oct-2018 12:18:48 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pretty.c -o pretty.o build 03-Oct-2018 12:18:48 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c render.cpp -o render.o build 03-Oct-2018 12:18:48 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rglmath.cpp -o rglmath.o build 03-Oct-2018 12:18:48 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rglview.cpp -o rglview.o build 03-Oct-2018 12:18:49 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scene.cpp -o scene.o build 03-Oct-2018 12:18:49 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c select.cpp -o select.o build 03-Oct-2018 12:18:49 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c subscene.cpp -o subscene.o build 03-Oct-2018 12:18:50 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c win32gui.cpp -o win32gui.o build 03-Oct-2018 12:18:50 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c win32lib.cpp -o win32lib.o build 03-Oct-2018 12:18:50 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c x11gui.cpp -o x11gui.o build 03-Oct-2018 12:18:51 g++ -I/usr/share/R/include -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c x11lib.cpp -o x11lib.o build 03-Oct-2018 12:18:51 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o rgl.so ABCLineSet.o BBoxDeco.o Background.o ClipPlane.o Color.o Disposable.o Light.o LineSet.o LineStripSet.o Material.o NULLgui.o PlaneSet.o PointSet.o PrimitiveSet.o RenderContext.o Shape.o SphereMesh.o SphereSet.o SpriteSet.o String.o Surface.o TextSet.o Texture.o Viewpoint.o api.o assert.o callbacks.o device.o devicemanager.o fps.o ftgl.o geom.o gl2ps.o glErrors.o glgui.o gui.o init.o par3d.o pixmap.o platform.o pretty.o render.o rglmath.o rglview.o scene.o select.o subscene.o win32gui.o win32lib.o x11gui.o x11lib.o -lGLU -lGL -lpng12 -lX11 -lfreetype -L/usr/lib/R/lib -lR build 03-Oct-2018 12:18:51 installing to /usr/local/lib/R/site-library/rgl/libs build 03-Oct-2018 12:18:51 ** R build 03-Oct-2018 12:18:51 ** demo build 03-Oct-2018 12:18:51 ** inst build 03-Oct-2018 12:18:51 ** preparing package for lazy loading build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'Rcpp::evalCpp' when loading 'later' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::validateCssUnit' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::br' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::tags' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::div' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::h1' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::h2' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::h3' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::h4' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::h5' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::h6' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::knit_print.html' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::tagSetChildren' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::includeScript' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::em' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::tagAppendChild' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::is.singleton' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::includeHTML' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::includeMarkdown' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::code' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::tagList' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::a' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::tagAppendAttributes' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::singleton' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::hr' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::p' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::suppressDependencies' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::tagAppendChildren' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::includeText' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::pre' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::span' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::withTags' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::htmlTemplate' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::img' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::tag' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::includeCSS' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::knit_print.shiny.tag' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::knit_print.shiny.tag.list' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::strong' when loading 'crosstalk' build 03-Oct-2018 12:18:51 Warning: replacing previous import by 'shiny::HTML' when loading 'crosstalk' build 03-Oct-2018 12:18:52 ** help build 03-Oct-2018 12:18:52 *** installing help indices build 03-Oct-2018 12:18:52 ** building package indices build 03-Oct-2018 12:18:53 ** installing vignettes build 03-Oct-2018 12:18:53 ** testing if installed package can be loaded build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'Rcpp::evalCpp' when loading 'later' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::validateCssUnit' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::br' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::tags' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::div' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::h1' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::h2' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::h3' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::h4' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::h5' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::h6' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::knit_print.html' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::tagSetChildren' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::includeScript' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::em' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::tagAppendChild' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::is.singleton' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::includeHTML' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::includeMarkdown' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::code' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::tagList' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::a' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::tagAppendAttributes' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::singleton' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::hr' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::p' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::suppressDependencies' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::tagAppendChildren' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::includeText' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::pre' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::span' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::withTags' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::htmlTemplate' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::img' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::tag' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::includeCSS' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::knit_print.shiny.tag' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::knit_print.shiny.tag.list' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::strong' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning: replacing previous import by 'shiny::HTML' when loading 'crosstalk' build 03-Oct-2018 12:18:53 Warning in rgl.init(initValue, onlyNULL) : build 03-Oct-2018 12:18:53 RGL: unable to open X11 display build 03-Oct-2018 12:18:53 Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE build 03-Oct-2018 12:18:53 * DONE (rgl) build 03-Oct-2018 12:18:54 * installing *source* package 'devtools' ... build 03-Oct-2018 12:18:54 ** package 'devtools' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:18:54 ** R build 03-Oct-2018 12:18:54 ** inst build 03-Oct-2018 12:18:54 ** preparing package for lazy loading build 03-Oct-2018 12:18:54 ** help build 03-Oct-2018 12:18:54 *** installing help indices build 03-Oct-2018 12:18:54 ** building package indices build 03-Oct-2018 12:18:54 ** installing vignettes build 03-Oct-2018 12:18:55 ** testing if installed package can be loaded build 03-Oct-2018 12:18:55 * DONE (devtools) build 03-Oct-2018 12:18:55 * installing *source* package 'gplots' ... build 03-Oct-2018 12:18:55 ** package 'gplots' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:18:55 ** R build 03-Oct-2018 12:18:55 ** data build 03-Oct-2018 12:18:55 ** inst build 03-Oct-2018 12:18:55 ** preparing package for lazy loading build 03-Oct-2018 12:18:55 ** help build 03-Oct-2018 12:18:55 *** installing help indices build 03-Oct-2018 12:18:56 ** building package indices build 03-Oct-2018 12:18:56 ** installing vignettes build 03-Oct-2018 12:18:56 ** testing if installed package can be loaded build 03-Oct-2018 12:18:56 * DONE (gplots) build 03-Oct-2018 12:18:56 * installing *source* package 'viridis' ... build 03-Oct-2018 12:18:56 ** package 'viridis' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:18:56 ** R build 03-Oct-2018 12:18:56 ** inst build 03-Oct-2018 12:18:56 ** preparing package for lazy loading build 03-Oct-2018 12:18:57 ** help build 03-Oct-2018 12:18:57 *** installing help indices build 03-Oct-2018 12:18:57 *** copying figures build 03-Oct-2018 12:18:57 ** building package indices build 03-Oct-2018 12:18:57 ** installing vignettes build 03-Oct-2018 12:18:57 ** testing if installed package can be loaded build 03-Oct-2018 12:18:57 * DONE (viridis) build 03-Oct-2018 12:18:57 * installing *source* package 'covr' ... build 03-Oct-2018 12:18:57 ** package 'covr' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:18:57 ** libs build 03-Oct-2018 12:18:57 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c reassign.c -o reassign.o build 03-Oct-2018 12:18:57 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o covr.so reassign.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:18:58 installing to /usr/local/lib/R/site-library/covr/libs build 03-Oct-2018 12:18:58 ** R build 03-Oct-2018 12:18:58 ** inst build 03-Oct-2018 12:18:58 ** preparing package for lazy loading build 03-Oct-2018 12:18:58 ** help build 03-Oct-2018 12:18:58 *** installing help indices build 03-Oct-2018 12:18:58 *** copying figures build 03-Oct-2018 12:18:58 ** building package indices build 03-Oct-2018 12:18:58 ** installing vignettes build 03-Oct-2018 12:18:58 ** testing if installed package can be loaded build 03-Oct-2018 12:18:58 * DONE (covr) build 03-Oct-2018 12:18:58 * installing *source* package 'multcomp' ... build 03-Oct-2018 12:18:58 ** package 'multcomp' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:18:58 ** R build 03-Oct-2018 12:18:58 ** data build 03-Oct-2018 12:18:58 *** moving datasets to lazyload DB build 03-Oct-2018 12:18:58 ** demo build 03-Oct-2018 12:18:58 ** inst build 03-Oct-2018 12:18:58 ** preparing package for lazy loading build 03-Oct-2018 12:18:59 ** help build 03-Oct-2018 12:19:00 *** installing help indices build 03-Oct-2018 12:19:00 ** building package indices build 03-Oct-2018 12:19:00 ** installing vignettes build 03-Oct-2018 12:19:00 ** testing if installed package can be loaded build 03-Oct-2018 12:19:01 * DONE (multcomp) build 03-Oct-2018 12:19:02 * installing *source* package 'spacetime' ... build 03-Oct-2018 12:19:02 ** package 'spacetime' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:19:02 ** R build 03-Oct-2018 12:19:02 ** data build 03-Oct-2018 12:19:02 ** demo build 03-Oct-2018 12:19:02 ** inst build 03-Oct-2018 12:19:02 ** preparing package for lazy loading build 03-Oct-2018 12:19:02 in method for 'coerce' with signature '"RasterStackBrick","STFDF"': no definition for class "RasterStackBrick" build 03-Oct-2018 12:19:02 in method for 'coerce' with signature '"STFDF","RasterBrick"': no definition for class "RasterBrick" build 03-Oct-2018 12:19:02 in method for 'stplot' with signature '"RasterStackBrick"': no definition for class "RasterStackBrick" build 03-Oct-2018 12:19:02 ** help build 03-Oct-2018 12:19:02 *** installing help indices build 03-Oct-2018 12:19:02 ** building package indices build 03-Oct-2018 12:19:03 ** installing vignettes build 03-Oct-2018 12:19:03 ** testing if installed package can be loaded build 03-Oct-2018 12:19:03 * DONE (spacetime) build 03-Oct-2018 12:19:04 * installing *source* package 'RSQLite' ... build 03-Oct-2018 12:19:04 ** package 'RSQLite' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:19:04 ** libs build 03-Oct-2018 12:19:04 g++ -I/usr/share/R/include -DNDEBUG -I. -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c DbColumn.cpp -o DbColumn.o build 03-Oct-2018 12:19:07 g++ -I/usr/share/R/include -DNDEBUG -I. -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c DbColumnDataSource.cpp -o DbColumnDataSource.o build 03-Oct-2018 12:19:10 g++ -I/usr/share/R/include -DNDEBUG -I. -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c DbColumnDataSourceFactory.cpp -o DbColumnDataSourceFactory.o build 03-Oct-2018 12:19:13 g++ -I/usr/share/R/include -DNDEBUG -I. -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c DbColumnStorage.cpp -o DbColumnStorage.o build 03-Oct-2018 12:19:17 g++ -I/usr/share/R/include -DNDEBUG -I. -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c DbConnection.cpp -o DbConnection.o build 03-Oct-2018 12:19:20 g++ -I/usr/share/R/include -DNDEBUG -I. -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c DbDataFrame.cpp -o DbDataFrame.o build 03-Oct-2018 12:19:24 g++ -I/usr/share/R/include -DNDEBUG -I. -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c DbResult.cpp -o DbResult.o build 03-Oct-2018 12:19:28 g++ -I/usr/share/R/include -DNDEBUG -I. -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o build 03-Oct-2018 12:19:33 g++ -I/usr/share/R/include -DNDEBUG -I. -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SqliteColumnDataSource.cpp -o SqliteColumnDataSource.o build 03-Oct-2018 12:19:35 g++ -I/usr/share/R/include -DNDEBUG -I. -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SqliteColumnDataSourceFactory.cpp -o SqliteColumnDataSourceFactory.o build 03-Oct-2018 12:19:38 g++ -I/usr/share/R/include -DNDEBUG -I. -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SqliteDataFrame.cpp -o SqliteDataFrame.o build 03-Oct-2018 12:19:41 g++ -I/usr/share/R/include -DNDEBUG -I. -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SqliteResultImpl.cpp -o SqliteResultImpl.o build 03-Oct-2018 12:19:45 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c affinity.c -o affinity.o build 03-Oct-2018 12:19:45 g++ -I/usr/share/R/include -DNDEBUG -I. -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c connection.cpp -o connection.o build 03-Oct-2018 12:19:48 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c import-file.c -o import-file.o build 03-Oct-2018 12:19:49 g++ -I/usr/share/R/include -DNDEBUG -I. -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c result.cpp -o result.o build 03-Oct-2018 12:19:51 g++ -I/usr/share/R/include -DNDEBUG -I. -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rsqlite.cpp -o rsqlite.o build 03-Oct-2018 12:19:54 g++ -I/usr/share/R/include -DNDEBUG -I. -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.cpp -o utils.o build 03-Oct-2018 12:19:58 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c vendor/sqlite3/extension-functions.c -o vendor/sqlite3/extension-functions.o build 03-Oct-2018 12:19:58 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c vendor/sqlite3/sqlite3.c -o vendor/sqlite3/sqlite3.o build 03-Oct-2018 12:20:27 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o RSQLite.so DbColumn.o DbColumnDataSource.o DbColumnDataSourceFactory.o DbColumnStorage.o DbConnection.o DbDataFrame.o DbResult.o RcppExports.o SqliteColumnDataSource.o SqliteColumnDataSourceFactory.o SqliteDataFrame.o SqliteResultImpl.o affinity.o connection.o import-file.o result.o rsqlite.o utils.o vendor/sqlite3/extension-functions.o vendor/sqlite3/sqlite3.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:20:27 installing to /usr/local/lib/R/site-library/RSQLite/libs build 03-Oct-2018 12:20:27 ** R build 03-Oct-2018 12:20:27 ** inst build 03-Oct-2018 12:20:27 ** preparing package for lazy loading build 03-Oct-2018 12:20:27 ** help build 03-Oct-2018 12:20:28 *** installing help indices build 03-Oct-2018 12:20:28 ** building package indices build 03-Oct-2018 12:20:28 ** installing vignettes build 03-Oct-2018 12:20:28 ** testing if installed package can be loaded build 03-Oct-2018 12:20:28 * DONE (RSQLite) build 03-Oct-2018 12:20:29 * installing *source* package 'dplyr' ... build 03-Oct-2018 12:20:29 ** package 'dplyr' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:20:29 ** libs build 03-Oct-2018 12:20:29 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o build 03-Oct-2018 12:20:35 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c address.cpp -o address.o build 03-Oct-2018 12:20:38 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c api.cpp -o api.o build 03-Oct-2018 12:20:46 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c arrange.cpp -o arrange.o build 03-Oct-2018 12:20:54 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c between.cpp -o between.o build 03-Oct-2018 12:20:56 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bind.cpp -o bind.o build 03-Oct-2018 12:21:03 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c combine_variables.cpp -o combine_variables.o build 03-Oct-2018 12:21:07 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c distinct.cpp -o distinct.o build 03-Oct-2018 12:21:13 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c encoding.cpp -o encoding.o build 03-Oct-2018 12:21:16 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c filter.cpp -o filter.o build 03-Oct-2018 12:21:23 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c group_by.cpp -o group_by.o build 03-Oct-2018 12:21:28 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c group_indices.cpp -o group_indices.o build 03-Oct-2018 12:21:35 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hybrid.cpp -o hybrid.o build 03-Oct-2018 12:21:40 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hybrid_count.cpp -o hybrid_count.o build 03-Oct-2018 12:21:46 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hybrid_debug.cpp -o hybrid_debug.o build 03-Oct-2018 12:21:50 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hybrid_in.cpp -o hybrid_in.o build 03-Oct-2018 12:21:55 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hybrid_minmax.cpp -o hybrid_minmax.o build 03-Oct-2018 12:22:00 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hybrid_nth.cpp -o hybrid_nth.o build 03-Oct-2018 12:22:09 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hybrid_offset.cpp -o hybrid_offset.o build 03-Oct-2018 12:22:14 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hybrid_simple.cpp -o hybrid_simple.o build 03-Oct-2018 12:22:19 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hybrid_window.cpp -o hybrid_window.o build 03-Oct-2018 12:22:30 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.cpp -o init.o build 03-Oct-2018 12:22:32 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c join.cpp -o join.o build 03-Oct-2018 12:22:38 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c join_exports.cpp -o join_exports.o build 03-Oct-2018 12:22:43 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mutate.cpp -o mutate.o build 03-Oct-2018 12:22:53 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rlang-export.c -o rlang-export.o build 03-Oct-2018 12:22:53 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rlang.cpp -o rlang.o build 03-Oct-2018 12:22:56 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c select.cpp -o select.o build 03-Oct-2018 12:23:01 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c set.cpp -o set.o build 03-Oct-2018 12:23:08 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c slice.cpp -o slice.o build 03-Oct-2018 12:23:14 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c summarise.cpp -o summarise.o build 03-Oct-2018 12:23:23 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c test.cpp -o test.o build 03-Oct-2018 12:23:26 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.cpp -o utils.o build 03-Oct-2018 12:23:30 g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/bindrcpp/include" -I"/usr/local/lib/R/site-library/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c window.cpp -o window.o build 03-Oct-2018 12:23:33 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o dplyr.so RcppExports.o address.o api.o arrange.o between.o bind.o combine_variables.o distinct.o encoding.o filter.o group_by.o group_indices.o hybrid.o hybrid_count.o hybrid_debug.o hybrid_in.o hybrid_minmax.o hybrid_nth.o hybrid_offset.o hybrid_simple.o hybrid_window.o init.o join.o join_exports.o mutate.o rlang-export.o rlang.o select.o set.o slice.o summarise.o test.o utils.o window.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:23:34 installing to /usr/local/lib/R/site-library/dplyr/libs build 03-Oct-2018 12:23:34 ** R build 03-Oct-2018 12:23:34 ** data build 03-Oct-2018 12:23:34 *** moving datasets to lazyload DB build 03-Oct-2018 12:23:34 ** inst build 03-Oct-2018 12:23:34 ** preparing package for lazy loading build 03-Oct-2018 12:23:34 ** help build 03-Oct-2018 12:23:35 *** installing help indices build 03-Oct-2018 12:23:35 *** copying figures build 03-Oct-2018 12:23:35 ** building package indices build 03-Oct-2018 12:23:35 ** installing vignettes build 03-Oct-2018 12:23:35 ** testing if installed package can be loaded build 03-Oct-2018 12:23:36 * DONE (dplyr) build 03-Oct-2018 12:23:36 * installing *source* package 'ggmap' ... build 03-Oct-2018 12:23:36 ** package 'ggmap' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:23:36 ** R build 03-Oct-2018 12:23:36 ** data build 03-Oct-2018 12:23:36 *** moving datasets to lazyload DB build 03-Oct-2018 12:23:39 ** inst build 03-Oct-2018 12:23:39 ** preparing package for lazy loading build 03-Oct-2018 12:23:39 ** help build 03-Oct-2018 12:23:39 *** installing help indices build 03-Oct-2018 12:23:40 ** building package indices build 03-Oct-2018 12:23:40 ** testing if installed package can be loaded build 03-Oct-2018 12:23:40 * DONE (ggmap) build 03-Oct-2018 12:23:41 * installing *source* package 'dismo' ... build 03-Oct-2018 12:23:41 ** package 'dismo' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:23:41 ** libs build 03-Oct-2018 12:23:41 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c percRank.c -o percRank.o build 03-Oct-2018 12:23:41 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o dismo.so percRank.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:23:41 installing to /usr/local/lib/R/site-library/dismo/libs build 03-Oct-2018 12:23:41 ** R build 03-Oct-2018 12:23:41 ** data build 03-Oct-2018 12:23:41 ** inst build 03-Oct-2018 12:23:41 ** preparing package for lazy loading build 03-Oct-2018 12:23:42 ** help build 03-Oct-2018 12:23:43 *** installing help indices build 03-Oct-2018 12:23:43 ** building package indices build 03-Oct-2018 12:23:43 ** installing vignettes build 03-Oct-2018 12:23:43 ** testing if installed package can be loaded build 03-Oct-2018 12:23:44 * DONE (dismo) build 03-Oct-2018 12:23:44 * installing *source* package 'rglwidget' ... build 03-Oct-2018 12:23:44 ** package 'rglwidget' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:23:44 ** R build 03-Oct-2018 12:23:44 ** preparing package for lazy loading build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'Rcpp::evalCpp' when loading 'later' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::validateCssUnit' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::br' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::tags' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::div' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::h1' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::h2' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::h3' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::h4' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::h5' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::h6' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::knit_print.html' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::tagSetChildren' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::includeScript' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::em' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::tagAppendChild' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::is.singleton' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::includeHTML' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::includeMarkdown' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::code' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::tagList' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::a' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::tagAppendAttributes' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::singleton' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::hr' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::p' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::suppressDependencies' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::tagAppendChildren' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::includeText' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::pre' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::span' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::withTags' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::htmlTemplate' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::img' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::tag' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::includeCSS' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::knit_print.shiny.tag' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::knit_print.shiny.tag.list' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::strong' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning: replacing previous import by 'shiny::HTML' when loading 'crosstalk' build 03-Oct-2018 12:23:44 Warning in rgl.init(initValue, onlyNULL) : build 03-Oct-2018 12:23:44 RGL: unable to open X11 display build 03-Oct-2018 12:23:44 Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE build 03-Oct-2018 12:23:44 ** help build 03-Oct-2018 12:23:44 *** installing help indices build 03-Oct-2018 12:23:45 ** building package indices build 03-Oct-2018 12:23:45 ** testing if installed package can be loaded build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'Rcpp::evalCpp' when loading 'later' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::validateCssUnit' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::br' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::tags' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::div' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::h1' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::h2' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::h3' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::h4' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::h5' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::h6' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::knit_print.html' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::tagSetChildren' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::includeScript' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::em' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::tagAppendChild' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::is.singleton' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::includeHTML' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::includeMarkdown' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::code' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::tagList' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::a' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::tagAppendAttributes' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::singleton' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::hr' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::p' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::suppressDependencies' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::tagAppendChildren' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::includeText' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::pre' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::span' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::withTags' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::htmlTemplate' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::img' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::tag' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::includeCSS' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::knit_print.shiny.tag' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::knit_print.shiny.tag.list' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::strong' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning: replacing previous import by 'shiny::HTML' when loading 'crosstalk' build 03-Oct-2018 12:23:45 Warning in rgl.init(initValue, onlyNULL) : build 03-Oct-2018 12:23:45 RGL: unable to open X11 display build 03-Oct-2018 12:23:45 Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE build 03-Oct-2018 12:23:45 * DONE (rglwidget) build 03-Oct-2018 12:23:45 * installing *source* package 'dygraphs' ... build 03-Oct-2018 12:23:45 ** package 'dygraphs' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:23:45 ** R build 03-Oct-2018 12:23:45 ** inst build 03-Oct-2018 12:23:45 ** preparing package for lazy loading build 03-Oct-2018 12:23:45 ** help build 03-Oct-2018 12:23:46 *** installing help indices build 03-Oct-2018 12:23:46 ** building package indices build 03-Oct-2018 12:23:46 ** testing if installed package can be loaded build 03-Oct-2018 12:23:46 * DONE (dygraphs) build 03-Oct-2018 12:23:47 * installing *source* package 'fields' ... build 03-Oct-2018 12:23:47 ** package 'fields' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:23:47 ** libs build 03-Oct-2018 12:23:47 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ExponentialUpperC.c -o ExponentialUpperC.o build 03-Oct-2018 12:23:47 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c addToDiagC.c -o addToDiagC.o build 03-Oct-2018 12:23:47 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c compactToMatC.c -o compactToMatC.o build 03-Oct-2018 12:23:47 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c expfnC.c -o expfnC.o build 03-Oct-2018 12:23:47 gfortran -fpic -g -O2 -fstack-protector-strong -c fieldsF77Code.f -o fieldsF77Code.o build 03-Oct-2018 12:23:47 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:23:47 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c multebC.c -o multebC.o build 03-Oct-2018 12:23:48 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rdistC.c -o rdistC.o build 03-Oct-2018 12:23:48 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o fields.so ExponentialUpperC.o addToDiagC.o compactToMatC.o expfnC.o fieldsF77Code.o init.o multebC.o rdistC.o -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR build 03-Oct-2018 12:23:48 installing to /usr/local/lib/R/site-library/fields/libs build 03-Oct-2018 12:23:48 ** R build 03-Oct-2018 12:23:48 ** data build 03-Oct-2018 12:23:48 ** inst build 03-Oct-2018 12:23:48 ** preparing package for lazy loading build 03-Oct-2018 12:23:48 Warning in FUN(X[[i]], ...) : build 03-Oct-2018 12:23:48 failed to assign RegisteredNativeSymbol for toeplitz to toeplitz since toeplitz is already defined in the 'spam' namespace build 03-Oct-2018 12:23:48 ** help build 03-Oct-2018 12:23:49 *** installing help indices build 03-Oct-2018 12:23:49 ** building package indices build 03-Oct-2018 12:23:49 ** testing if installed package can be loaded build 03-Oct-2018 12:23:50 Warning in FUN(X[[i]], ...) : build 03-Oct-2018 12:23:50 failed to assign RegisteredNativeSymbol for toeplitz to toeplitz since toeplitz is already defined in the 'spam' namespace build 03-Oct-2018 12:23:50 * DONE (fields) build 03-Oct-2018 12:23:50 * installing *source* package 'Hmisc' ... build 03-Oct-2018 12:23:50 ** package 'Hmisc' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:23:50 ** libs build 03-Oct-2018 12:23:50 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Hmisc.c -o Hmisc.o build 03-Oct-2018 12:23:51 gfortran -fpic -g -O2 -fstack-protector-strong -c cidxcn.f -o cidxcn.o build 03-Oct-2018 12:23:51 gfortran -fpic -g -O2 -fstack-protector-strong -c cidxcp.f -o cidxcp.o build 03-Oct-2018 12:23:51 gfortran -fpic -g -O2 -fstack-protector-strong -c hoeffd.f -o hoeffd.o build 03-Oct-2018 12:23:51 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:23:51 gfortran -fpic -g -O2 -fstack-protector-strong -c jacklins.f -o jacklins.o build 03-Oct-2018 12:23:51 gfortran -fpic -g -O2 -fstack-protector-strong -c largrec.f -o largrec.o build 03-Oct-2018 12:23:51 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mChoice.c -o mChoice.o build 03-Oct-2018 12:23:51 gfortran -fpic -g -O2 -fstack-protector-strong -c maxempr.f -o maxempr.o build 03-Oct-2018 12:23:51 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nstr.c -o nstr.o build 03-Oct-2018 12:23:51 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ranksort.c -o ranksort.o build 03-Oct-2018 12:23:51 gfortran -fpic -g -O2 -fstack-protector-strong -c rcorr.f -o rcorr.o build 03-Oct-2018 12:23:51 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c string_box.c -o string_box.o build 03-Oct-2018 12:23:51 gfortran -fpic -g -O2 -fstack-protector-strong -c wclosest.f -o wclosest.o build 03-Oct-2018 12:23:51 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o Hmisc.so Hmisc.o cidxcn.o cidxcp.o hoeffd.o init.o jacklins.o largrec.o mChoice.o maxempr.o nstr.o ranksort.o rcorr.o string_box.o wclosest.o -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR build 03-Oct-2018 12:23:51 installing to /usr/local/lib/R/site-library/Hmisc/libs build 03-Oct-2018 12:23:51 ** R build 03-Oct-2018 12:23:52 ** inst build 03-Oct-2018 12:23:52 ** preparing package for lazy loading build 03-Oct-2018 12:23:54 ** help build 03-Oct-2018 12:23:55 *** installing help indices build 03-Oct-2018 12:23:56 ** building package indices build 03-Oct-2018 12:23:57 ** testing if installed package can be loaded build 03-Oct-2018 12:23:59 * DONE (Hmisc) build 03-Oct-2018 12:23:59 * installing *source* package 'vdiffr' ... build 03-Oct-2018 12:23:59 ** package 'vdiffr' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:23:59 ** libs build 03-Oct-2018 12:23:59 g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o build 03-Oct-2018 12:24:02 g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c compare.cpp -o compare.o build 03-Oct-2018 12:24:04 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o vdiffr.so RcppExports.o compare.o -L/usr/lib/R/lib -lR build 03-Oct-2018 12:24:04 installing to /usr/local/lib/R/site-library/vdiffr/libs build 03-Oct-2018 12:24:04 ** R build 03-Oct-2018 12:24:04 ** inst build 03-Oct-2018 12:24:04 ** byte-compile and prepare package for lazy loading build 03-Oct-2018 12:24:05 ** help build 03-Oct-2018 12:24:05 *** installing help indices build 03-Oct-2018 12:24:05 ** building package indices build 03-Oct-2018 12:24:05 ** testing if installed package can be loaded build 03-Oct-2018 12:24:05 * DONE (vdiffr) build 03-Oct-2018 12:24:06 * installing *source* package 'dbplyr' ... build 03-Oct-2018 12:24:06 ** package 'dbplyr' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:24:06 ** R build 03-Oct-2018 12:24:06 ** inst build 03-Oct-2018 12:24:06 ** preparing package for lazy loading build 03-Oct-2018 12:24:06 Warning: replacing previous import by 'rlang::quo_name' when loading 'dbplyr' build 03-Oct-2018 12:24:06 Warning: replacing previous import by 'rlang::enquos' when loading 'dbplyr' build 03-Oct-2018 12:24:06 Warning: replacing previous import by 'rlang::enexpr' when loading 'dbplyr' build 03-Oct-2018 12:24:06 Warning: replacing previous import by 'rlang::.data' when loading 'dbplyr' build 03-Oct-2018 12:24:06 Warning: replacing previous import by 'rlang::quo' when loading 'dbplyr' build 03-Oct-2018 12:24:06 Warning: replacing previous import by 'rlang::enexprs' when loading 'dbplyr' build 03-Oct-2018 12:24:06 Warning: replacing previous import by 'rlang::ensyms' when loading 'dbplyr' build 03-Oct-2018 12:24:06 Warning: replacing previous import by 'rlang::enquo' when loading 'dbplyr' build 03-Oct-2018 12:24:06 Warning: replacing previous import by 'rlang::quos' when loading 'dbplyr' build 03-Oct-2018 12:24:06 Warning: replacing previous import by 'rlang::expr' when loading 'dbplyr' build 03-Oct-2018 12:24:06 Warning: replacing previous import by 'rlang::sym' when loading 'dbplyr' build 03-Oct-2018 12:24:06 Warning: replacing previous import by 'rlang::ensym' when loading 'dbplyr' build 03-Oct-2018 12:24:06 Warning: replacing previous import by 'rlang::syms' when loading 'dbplyr' build 03-Oct-2018 12:24:06 Warning: replacing previous import by 'tibble::tibble' when loading 'dbplyr' build 03-Oct-2018 12:24:06 ** help build 03-Oct-2018 12:24:06 *** installing help indices build 03-Oct-2018 12:24:06 *** copying figures build 03-Oct-2018 12:24:06 ** building package indices build 03-Oct-2018 12:24:07 ** installing vignettes build 03-Oct-2018 12:24:07 ** testing if installed package can be loaded build 03-Oct-2018 12:24:07 Warning: replacing previous import by 'rlang::quo_name' when loading 'dbplyr' build 03-Oct-2018 12:24:07 Warning: replacing previous import by 'rlang::enquos' when loading 'dbplyr' build 03-Oct-2018 12:24:07 Warning: replacing previous import by 'rlang::enexpr' when loading 'dbplyr' build 03-Oct-2018 12:24:07 Warning: replacing previous import by 'rlang::.data' when loading 'dbplyr' build 03-Oct-2018 12:24:07 Warning: replacing previous import by 'rlang::quo' when loading 'dbplyr' build 03-Oct-2018 12:24:07 Warning: replacing previous import by 'rlang::enexprs' when loading 'dbplyr' build 03-Oct-2018 12:24:07 Warning: replacing previous import by 'rlang::ensyms' when loading 'dbplyr' build 03-Oct-2018 12:24:07 Warning: replacing previous import by 'rlang::enquo' when loading 'dbplyr' build 03-Oct-2018 12:24:07 Warning: replacing previous import by 'rlang::quos' when loading 'dbplyr' build 03-Oct-2018 12:24:07 Warning: replacing previous import by 'rlang::expr' when loading 'dbplyr' build 03-Oct-2018 12:24:07 Warning: replacing previous import by 'rlang::sym' when loading 'dbplyr' build 03-Oct-2018 12:24:07 Warning: replacing previous import by 'rlang::ensym' when loading 'dbplyr' build 03-Oct-2018 12:24:07 Warning: replacing previous import by 'rlang::syms' when loading 'dbplyr' build 03-Oct-2018 12:24:07 Warning: replacing previous import by 'tibble::tibble' when loading 'dbplyr' build 03-Oct-2018 12:24:07 * DONE (dbplyr) build 03-Oct-2018 12:24:07 * installing *source* package 'dtplyr' ... build 03-Oct-2018 12:24:07 ** package 'dtplyr' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:24:07 ** R build 03-Oct-2018 12:24:07 ** preparing package for lazy loading build 03-Oct-2018 12:24:08 ** help build 03-Oct-2018 12:24:08 *** installing help indices build 03-Oct-2018 12:24:08 ** building package indices build 03-Oct-2018 12:24:08 ** testing if installed package can be loaded build 03-Oct-2018 12:24:08 * DONE (dtplyr) build 03-Oct-2018 12:24:08 * installing *source* package 'Lahman' ... build 03-Oct-2018 12:24:09 ** package 'Lahman' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:24:09 ** R build 03-Oct-2018 12:24:09 ** data build 03-Oct-2018 12:24:09 *** moving datasets to lazyload DB build 03-Oct-2018 12:24:16 ** demo build 03-Oct-2018 12:24:16 ** inst build 03-Oct-2018 12:24:16 ** preparing package for lazy loading build 03-Oct-2018 12:24:16 ** help build 03-Oct-2018 12:24:16 *** installing help indices build 03-Oct-2018 12:24:16 ** building package indices build 03-Oct-2018 12:24:17 ** testing if installed package can be loaded build 03-Oct-2018 12:24:17 * DONE (Lahman) build 03-Oct-2018 12:24:17 * installing *source* package 'ROCR' ... build 03-Oct-2018 12:24:17 ** package 'ROCR' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:24:17 ** R build 03-Oct-2018 12:24:17 ** data build 03-Oct-2018 12:24:17 ** demo build 03-Oct-2018 12:24:17 ** inst build 03-Oct-2018 12:24:17 ** preparing package for lazy loading build 03-Oct-2018 12:24:17 Creating a generic function for 'plot' from package 'graphics' in package 'ROCR' build 03-Oct-2018 12:24:17 ** help build 03-Oct-2018 12:24:17 *** installing help indices build 03-Oct-2018 12:24:17 ** building package indices build 03-Oct-2018 12:24:17 ** testing if installed package can be loaded build 03-Oct-2018 12:24:17 * DONE (ROCR) build 03-Oct-2018 12:24:18 * installing *source* package 'leaflet' ... build 03-Oct-2018 12:24:18 ** package 'leaflet' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:24:18 ** R build 03-Oct-2018 12:24:18 ** data build 03-Oct-2018 12:24:18 *** moving datasets to lazyload DB build 03-Oct-2018 12:24:18 ** inst build 03-Oct-2018 12:24:18 ** preparing package for lazy loading build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'Rcpp::evalCpp' when loading 'later' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::validateCssUnit' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::br' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::tags' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::div' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::h1' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::h2' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::h3' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::h4' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::h5' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::h6' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::knit_print.html' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::tagSetChildren' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::includeScript' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::em' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::tagAppendChild' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::is.singleton' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::includeHTML' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::includeMarkdown' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::code' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::tagList' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::a' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::tagAppendAttributes' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::singleton' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::hr' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::p' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::suppressDependencies' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::tagAppendChildren' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::includeText' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::pre' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::span' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::withTags' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::htmlTemplate' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::img' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::tag' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::includeCSS' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::knit_print.shiny.tag' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::knit_print.shiny.tag.list' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::strong' when loading 'crosstalk' build 03-Oct-2018 12:24:18 Warning: replacing previous import by 'shiny::HTML' when loading 'crosstalk' build 03-Oct-2018 12:24:18 ** help build 03-Oct-2018 12:24:18 *** installing help indices build 03-Oct-2018 12:24:19 ** building package indices build 03-Oct-2018 12:24:19 ** testing if installed package can be loaded build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'Rcpp::evalCpp' when loading 'later' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::validateCssUnit' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::br' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::tags' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::div' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::h1' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::h2' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::h3' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::h4' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::h5' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::h6' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::knit_print.html' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::tagSetChildren' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::includeScript' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::em' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::tagAppendChild' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::is.singleton' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::includeHTML' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::includeMarkdown' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::code' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::tagList' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::a' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::tagAppendAttributes' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::singleton' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::hr' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::p' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::suppressDependencies' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::tagAppendChildren' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::includeText' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::pre' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::span' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::withTags' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::htmlTemplate' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::img' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::tag' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::includeCSS' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::knit_print.shiny.tag' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::knit_print.shiny.tag.list' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::strong' when loading 'crosstalk' build 03-Oct-2018 12:24:19 Warning: replacing previous import by 'shiny::HTML' when loading 'crosstalk' build 03-Oct-2018 12:24:19 * DONE (leaflet) build 03-Oct-2018 12:24:20 * installing *source* package 'gstat' ... build 03-Oct-2018 12:24:20 ** package 'gstat' successfully unpacked and MD5 sums checked build 03-Oct-2018 12:24:20 ** libs build 03-Oct-2018 12:24:20 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c block.c -o block.o build 03-Oct-2018 12:24:20 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c data.c -o data.o build 03-Oct-2018 12:24:20 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c direct.c -o direct.o build 03-Oct-2018 12:24:20 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fit.c -o fit.o build 03-Oct-2018 12:24:20 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gcdist.c -o gcdist.o build 03-Oct-2018 12:24:20 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c getest.c -o getest.o build 03-Oct-2018 12:24:21 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gls.c -o gls.o build 03-Oct-2018 12:24:21 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c glvars.c -o glvars.o build 03-Oct-2018 12:24:21 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o build 03-Oct-2018 12:24:21 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lm.c -o lm.o build 03-Oct-2018 12:24:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mapio.c -o mapio.o build 03-Oct-2018 12:24:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c msim.c -o msim.o build 03-Oct-2018 12:24:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mtrx.c -o mtrx.o build 03-Oct-2018 12:24:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nsearch.c -o nsearch.o build 03-Oct-2018 12:24:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pqueue.c -o pqueue.o build 03-Oct-2018 12:24:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c reml.c -o reml.o build 03-Oct-2018 12:24:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c s.c -o s.o build 03-Oct-2018 12:24:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c select.c -o select.o build 03-Oct-2018 12:24:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sem.c -o sem.o build 03-Oct-2018 12:24:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sim.c -o sim.o build 03-Oct-2018 12:24:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c userio.c -o userio.o build 03-Oct-2018 12:24:24 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o build 03-Oct-2018 12:24:24 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c vario.c -o vario.o build 03-Oct-2018 12:24:24 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c vario_fn.c -o vario_fn.o build 03-Oct-2018 12:24:24 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c vario_io.c -o vario_io.o build 03-Oct-2018 12:24:24 gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o gstat.so block.o data.o direct.o fit.o gcdist.o getest.o gls.o glvars.o init.o lm.o mapio.o msim.o mtrx.o nsearch.o pqueue.o reml.o s.o select.o sem.o sim.o userio.o utils.o vario.o vario_fn.o vario_io.o -llapack -lblas -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR build 03-Oct-2018 12:24:24 installing to /usr/local/lib/R/site-library/gstat/libs build 03-Oct-2018 12:24:24 ** R build 03-Oct-2018 12:24:24 ** data build 03-Oct-2018 12:24:24 ** demo build 03-Oct-2018 12:24:24 ** inst build 03-Oct-2018 12:24:24 ** preparing package for lazy loading build 03-Oct-2018 12:24:25 ** help build 03-Oct-2018 12:24:25 *** installing help indices build 03-Oct-2018 12:24:25 ** building package indices build 03-Oct-2018 12:24:25 ** installing vignettes build 03-Oct-2018 12:24:25 ** testing if installed package can be loaded build 03-Oct-2018 12:24:26 * DONE (gstat) build 03-Oct-2018 12:24:26 Warning messages: build 03-Oct-2018 12:24:26  build 03-Oct-2018 12:24:26 The downloaded source packages are in build 03-Oct-2018 12:24:26 '/tmp/RtmpMgc13E/downloaded_packages' build 03-Oct-2018 12:24:26 1: package 'spdep' is not available (for R version 3.2.3) build 03-Oct-2018 12:24:26 2: In install.packages(c("leaflet", "ggplot2", "sp", "gstat", "RColorBrewer", : build 03-Oct-2018 12:24:26 installation of package 'rJava' had non-zero exit status build 03-Oct-2018 12:24:26 3: In install.packages(c("leaflet", "ggplot2", "sp", "gstat", "RColorBrewer", : build 03-Oct-2018 12:24:26 installation of package 'RPostgreSQL' had non-zero exit status build 03-Oct-2018 12:24:30 Removing intermediate container 4f27fbf39bdd build 03-Oct-2018 12:24:30 ---> 013dea50c66b build 03-Oct-2018 12:24:30 Step 9/15 : COPY entrypoint.sh *.py *.R *.json /home/clowder/ build 03-Oct-2018 12:24:31 ---> bc110bf35e0f build 03-Oct-2018 12:24:31 Step 10/15 : RUN mkdir /home/clowder/src build 03-Oct-2018 12:24:31 ---> Running in 337a7e5b59d7 build 03-Oct-2018 12:24:33 Removing intermediate container 337a7e5b59d7 build 03-Oct-2018 12:24:33 ---> 3085157471af build 03-Oct-2018 12:24:33 Step 11/15 : COPY src /home/clowder/src build 03-Oct-2018 12:24:33 ---> 08ca092cccf8 build 03-Oct-2018 12:24:33 Step 12/15 : RUN chown clowder /home/clowder/entrypoint.sh && chmod 755 /home/clowder/entrypoint.sh build 03-Oct-2018 12:24:33 ---> Running in 829fc0ce5d69 build 03-Oct-2018 12:24:35 Removing intermediate container 829fc0ce5d69 build 03-Oct-2018 12:24:35 ---> 19c62b2b6978 build 03-Oct-2018 12:24:35 Step 13/15 : USER clowder build 03-Oct-2018 12:24:35 ---> Running in 26e4abdc824b build 03-Oct-2018 12:24:35 Removing intermediate container 26e4abdc824b build 03-Oct-2018 12:24:35 ---> 8bbab6bfc4d4 build 03-Oct-2018 12:24:35 Step 14/15 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 03-Oct-2018 12:24:35 ---> Running in d5a73ec9ff4b build 03-Oct-2018 12:24:35 Removing intermediate container d5a73ec9ff4b build 03-Oct-2018 12:24:35 ---> 0184aa116d6b build 03-Oct-2018 12:24:35 Step 15/15 : CMD ["extractor"] build 03-Oct-2018 12:24:36 ---> Running in 409147a83b82 build 03-Oct-2018 12:24:36 Removing intermediate container 409147a83b82 build 03-Oct-2018 12:24:36 ---> 5621cc9c2941 build 03-Oct-2018 12:24:36 Successfully built 5621cc9c2941 build 03-Oct-2018 12:24:36 Successfully tagged clowder/extractors-tuv:latest build 03-Oct-2018 12:24:36 Sending build context to Docker daemon 31.74kB build 03-Oct-2018 12:24:36 build 03-Oct-2018 12:24:36 Step 1/7 : FROM clowder/pyclowder:2 build 03-Oct-2018 12:24:36 ---> 5e2caea6057a build 03-Oct-2018 12:24:36 Step 2/7 : LABEL maintainer="Bing Zhang " build 03-Oct-2018 12:24:36 ---> Using cache build 03-Oct-2018 12:24:36 ---> dd05b4d2a47b build 03-Oct-2018 12:24:36 Step 3/7 : ENV RABBITMQ_QUEUE="ncsa.greenindex.circlearea" RABBITMQ_EXCHANGE="clowder" USERACCOUNT="" GOOGLE_MAP_APIKEY="" MAIN_SCRIPT="circleareagreenness.py" build 03-Oct-2018 12:24:36 ---> Using cache build 03-Oct-2018 12:24:36 ---> c399f63b3f9b build 03-Oct-2018 12:24:36 Step 4/7 : RUN apt-get update && apt-get install -y python-opencv python-geopy opencv-data python3-lxml && pip install numpy && pip install lxml && pip install xmltodict build 03-Oct-2018 12:24:36 ---> Using cache build 03-Oct-2018 12:24:36 ---> e274460b9ff8 build 03-Oct-2018 12:24:36 Step 5/7 : COPY circles.dtd entrypoint.sh *.py extractor_info.json /home/clowder/ build 03-Oct-2018 12:24:36 ---> Using cache build 03-Oct-2018 12:24:36 ---> f59525065e50 build 03-Oct-2018 12:24:36 Step 6/7 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 03-Oct-2018 12:24:36 ---> Using cache build 03-Oct-2018 12:24:36 ---> e594446b2ded build 03-Oct-2018 12:24:36 Step 7/7 : CMD ["extractor"] build 03-Oct-2018 12:24:36 ---> Using cache build 03-Oct-2018 12:24:36 ---> 5134b50fa1a2 build 03-Oct-2018 12:24:36 Successfully built 5134b50fa1a2 build 03-Oct-2018 12:24:37 Successfully tagged clowder/extractors-circlearea-greenness:latest simple 03-Oct-2018 12:24:37 Finished task 'docker build' with result: Success simple 03-Oct-2018 12:24:37 Starting task 'docker push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 03-Oct-2018 12:24:37 Beginning to execute external process for build 'Clowder - extractors-maps - release-0.5.0 - Default Job #2 (CATS-EXMAPS3-JOB1-2)'\n ... running command line: \n/bin/sh release.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXMAPS3-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=release/0.5.0\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_planRepository_1_branchDisplayName=release/0.5.0\nbamboo_repository_revision_number=5cf17331d254f6aef97ccf6d5a65c9c6a55d8437\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-EXMAPS3-JOB1-2\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXMAPS3-JOB1\nbamboo_planRepository_1_name=extractors-maps\nbamboo_buildKey=CATS-EXMAPS3-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=release-0.5.0\nbamboo_repository_163708992_previous_revision_number=6b904377629f57c4e0903a1f57c9076f21c5eb43\nbamboo_planRepository_name=extractors-maps\nbamboo_buildNumber=2\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-EXMAPS3-JOB1-2\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-maps.git\nbamboo_repository_163708992_name=extractors-maps\nbamboo_agentId=140673028\nbamboo_planName=Clowder - extractors-maps - release-0.5.0\nbamboo_shortPlanKey=EXMAPS3\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_shortJobKey=JOB1\nbamboo_repository_163708992_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-maps.git\nbamboo_planRepository_revision=5cf17331d254f6aef97ccf6d5a65c9c6a55d8437\nbamboo_buildTimeStamp=2018-10-03T11:52:13.947-05:00\nbamboo_repository_previous_revision_number=6b904377629f57c4e0903a1f57c9076f21c5eb43\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_3=/bin/sh docker.sh\nbamboo_planRepository_previousRevision=6b904377629f57c4e0903a1f57c9076f21c5eb43\nbamboo_repository_git_branch=release/0.5.0\nbamboo_buildResultKey=CATS-EXMAPS3-JOB1-2\nbamboo_repository_branch_name=release/0.5.0\nbamboo_buildPlanName=Clowder - extractors-maps - release-0.5.0 - Default Job\nbamboo_planRepository_1_revision=5cf17331d254f6aef97ccf6d5a65c9c6a55d8437\nbamboo_repository_163708992_git_branch=release/0.5.0\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=extractors-maps\nbamboo_buildFailed=false\nbamboo_repository_163708992_revision_number=5cf17331d254f6aef97ccf6d5a65c9c6a55d8437\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_branch=release/0.5.0\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=6b904377629f57c4e0903a1f57c9076f21c5eb43\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_planRepository_branchDisplayName=release/0.5.0\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_repository_163708992_git_username=\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=release/0.5.0\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-163512449\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-maps.git\nbamboo_repository_163708992_branch_name=release/0.5.0\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXMAPS3-JOB1\nbamboo_planKey=CATS-EXMAPS3\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-maps.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_1_branchName=release/0.5.0\n build 03-Oct-2018 12:24:37 Sending build context to Docker daemon 75.78kB build 03-Oct-2018 12:24:37 build 03-Oct-2018 12:24:37 Step 1/10 : FROM clowder/pyclowder:1 build 03-Oct-2018 12:24:37 ---> d1a9e970ed30 build 03-Oct-2018 12:24:37 Step 2/10 : MAINTAINER Marcus Slavenas build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> 2000db97c676 build 03-Oct-2018 12:24:37 Step 3/10 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.greenindex" REGISTRATION_ENDPOINTS="https://clowder.ncsa.illinois.edu/extractors" GOOGLE_MAP_APIKEY="" MAIN_SCRIPT="extractor.py" build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> ce8b66dca527 build 03-Oct-2018 12:24:37 Step 4/10 : USER root build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> 24f06a511758 build 03-Oct-2018 12:24:37 Step 5/10 : RUN apt-get update && apt-get install -y python-opencv python-geopy opencv-data python3-lxml && pip install numpy && pip install lxml && pip install xmltodict build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> be7c9c166b32 build 03-Oct-2018 12:24:37 Step 6/10 : USER clowder build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> 5c5b677710f9 build 03-Oct-2018 12:24:37 Step 7/10 : COPY entrypoint.sh *.py extractor_info.json /home/clowder/ build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> fd7297c736d6 build 03-Oct-2018 12:24:37 Step 8/10 : COPY src /home/clowder/src build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> 937348aa477b build 03-Oct-2018 12:24:37 Step 9/10 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> a345ee8eacc9 build 03-Oct-2018 12:24:37 Step 10/10 : CMD ["extractor"] build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> 10643e121f68 build 03-Oct-2018 12:24:37 Successfully built 10643e121f68 build 03-Oct-2018 12:24:37 Successfully tagged clowder/extractors-greenroute:latest build 03-Oct-2018 12:24:37 Sending build context to Docker daemon 901.1kB build 03-Oct-2018 12:24:37 build 03-Oct-2018 12:24:37 Step 1/10 : FROM clowder/pyclowder:2 build 03-Oct-2018 12:24:37 ---> 5e2caea6057a build 03-Oct-2018 12:24:37 Step 2/10 : MAINTAINER Marcus Slavenas build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> 5f9c8dca61dd build 03-Oct-2018 12:24:37 Step 3/10 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="ncsa.humanpref" REGISTRATION_ENDPOINTS="https://clowder.ncsa.illinois.edu/extractors" MAIN_SCRIPT="extractor.py" build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> 9ccb8450e3d6 build 03-Oct-2018 12:24:37 Step 4/10 : USER root build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> ff89ff3e1f6a build 03-Oct-2018 12:24:37 Step 5/10 : RUN apt-get update && pip install numpy && apt-get install -y python-opencv opencv-data && mkdir -p /matlab build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> 81fc09d95c5d build 03-Oct-2018 12:24:37 Step 6/10 : COPY entrypoint.sh *.py extractor_info.json /home/clowder/ build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> f2cca3589a6b build 03-Oct-2018 12:24:37 Step 7/10 : COPY src_gi /home/clowder/src_gi build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> ec9dce2eee41 build 03-Oct-2018 12:24:37 Step 8/10 : COPY src_hp /home/clowder/src_hp build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> 3d64f4732785 build 03-Oct-2018 12:24:37 Step 9/10 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> 91752eaa2611 build 03-Oct-2018 12:24:37 Step 10/10 : CMD ["extractor"] build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> 74e1dc03c513 build 03-Oct-2018 12:24:37 Successfully built 74e1dc03c513 build 03-Oct-2018 12:24:37 Successfully tagged clowder/extractors-human-preference:latest build 03-Oct-2018 12:24:37 Sending build context to Docker daemon 5.489MB build 03-Oct-2018 12:24:37 build 03-Oct-2018 12:24:37 Step 1/15 : FROM clowder/pyclowder:1 build 03-Oct-2018 12:24:37 ---> d1a9e970ed30 build 03-Oct-2018 12:24:37 Step 2/15 : MAINTAINER Rob Kooper build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> 59a21478a224 build 03-Oct-2018 12:24:37 Step 3/15 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.maps.tuv" MAIN_SCRIPT="extractor-tuv.py" build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> 51ee4d19b39c build 03-Oct-2018 12:24:37 Step 4/15 : USER root build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> b487cf35c602 build 03-Oct-2018 12:24:37 Step 5/15 : RUN apt-get update && apt-get upgrade -y -q && apt-get install -y -q r-base r-cran-rgl libxml2-dev mesa-common-dev libssl-dev libcurl4-openssl-dev libcairo2-dev libmariadb-client-lgpl-dev libmagick++-dev libglu1-mesa-dev build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> dc638d3a13a4 build 03-Oct-2018 12:24:37 Step 6/15 : RUN echo 'install.packages("rgl", repos="http://cran.us.r-project.org", dependencies=TRUE)' > /tmp/packages.R && Rscript /tmp/packages.R build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> 927f98c91467 build 03-Oct-2018 12:24:37 Step 7/15 : RUN apt-get install -y default-jre && R CMD javareconf build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> 3356dda97541 build 03-Oct-2018 12:24:37 Step 8/15 : RUN echo 'install.packages(c("leaflet","ggplot2","sp","gstat","RColorBrewer","rgl","dplyr","ggmap","lubridate","dismo","rglwidget","shiny","reshape2","dygraphs","pracma", "fields", "spdep"), repos="http://cran.us.r-project.org", dependencies=TRUE)' > /tmp/packages.R && Rscript /tmp/packages.R build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> 013dea50c66b build 03-Oct-2018 12:24:37 Step 9/15 : COPY entrypoint.sh *.py *.R *.json /home/clowder/ build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> bc110bf35e0f build 03-Oct-2018 12:24:37 Step 10/15 : RUN mkdir /home/clowder/src build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> 3085157471af build 03-Oct-2018 12:24:37 Step 11/15 : COPY src /home/clowder/src build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> 08ca092cccf8 build 03-Oct-2018 12:24:37 Step 12/15 : RUN chown clowder /home/clowder/entrypoint.sh && chmod 755 /home/clowder/entrypoint.sh build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> 19c62b2b6978 build 03-Oct-2018 12:24:37 Step 13/15 : USER clowder build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> 8bbab6bfc4d4 build 03-Oct-2018 12:24:37 Step 14/15 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> 0184aa116d6b build 03-Oct-2018 12:24:37 Step 15/15 : CMD ["extractor"] build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> 5621cc9c2941 build 03-Oct-2018 12:24:37 Successfully built 5621cc9c2941 build 03-Oct-2018 12:24:37 Successfully tagged clowder/extractors-tuv:latest build 03-Oct-2018 12:24:37 Sending build context to Docker daemon 31.74kB build 03-Oct-2018 12:24:37 build 03-Oct-2018 12:24:37 Step 1/7 : FROM clowder/pyclowder:2 build 03-Oct-2018 12:24:37 ---> 5e2caea6057a build 03-Oct-2018 12:24:37 Step 2/7 : LABEL maintainer="Bing Zhang " build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> dd05b4d2a47b build 03-Oct-2018 12:24:37 Step 3/7 : ENV RABBITMQ_QUEUE="ncsa.greenindex.circlearea" RABBITMQ_EXCHANGE="clowder" USERACCOUNT="" GOOGLE_MAP_APIKEY="" MAIN_SCRIPT="circleareagreenness.py" build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> c399f63b3f9b build 03-Oct-2018 12:24:37 Step 4/7 : RUN apt-get update && apt-get install -y python-opencv python-geopy opencv-data python3-lxml && pip install numpy && pip install lxml && pip install xmltodict build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> e274460b9ff8 build 03-Oct-2018 12:24:37 Step 5/7 : COPY circles.dtd entrypoint.sh *.py extractor_info.json /home/clowder/ build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> f59525065e50 build 03-Oct-2018 12:24:37 Step 6/7 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> e594446b2ded build 03-Oct-2018 12:24:37 Step 7/7 : CMD ["extractor"] build 03-Oct-2018 12:24:37 ---> Using cache build 03-Oct-2018 12:24:37 ---> 5134b50fa1a2 build 03-Oct-2018 12:24:37 Successfully built 5134b50fa1a2 build 03-Oct-2018 12:24:37 Successfully tagged clowder/extractors-circlearea-greenness:latest simple 03-Oct-2018 12:24:37 Finished task 'docker push' with result: Success simple 03-Oct-2018 12:24:37 Running post build plugin 'Docker Container Cleanup' simple 03-Oct-2018 12:24:37 Running post build plugin 'NCover Results Collector' simple 03-Oct-2018 12:24:37 Running post build plugin 'Clover Results Collector' simple 03-Oct-2018 12:24:37 Running post build plugin 'npm Cache Cleanup' simple 03-Oct-2018 12:24:37 Running post build plugin 'Artifact Copier' simple 03-Oct-2018 12:24:37 Finalising the build... simple 03-Oct-2018 12:24:37 Stopping timer. simple 03-Oct-2018 12:24:37 Build CATS-EXMAPS3-JOB1-2 completed. simple 03-Oct-2018 12:24:37 Running on server: post build plugin 'NCover Results Collector' simple 03-Oct-2018 12:24:37 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 03-Oct-2018 12:24:37 Running on server: post build plugin 'Clover Delta Calculator' simple 03-Oct-2018 12:24:37 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 03-Oct-2018 12:24:37 All post build plugins have finished simple 03-Oct-2018 12:24:38 Generating build results summary... simple 03-Oct-2018 12:24:38 Saving build results to disk... simple 03-Oct-2018 12:24:38 Logging substituted variables... simple 03-Oct-2018 12:24:38 Indexing build results... simple 03-Oct-2018 12:24:38 Finished building CATS-EXMAPS3-JOB1-2.