simple 03-Feb-2017 16:00:50 Build Clowder - extractors-siegfried - ken - Default Job #1 (CATS-EXSF2-JOB1-1) started building on agent buildserver-1.ncsa.illinois.edu simple 03-Feb-2017 16:00:50 Remote Agent simple 03-Feb-2017 16:00:50 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXSF2-JOB1 simple 03-Feb-2017 16:00:50 Executing build Clowder - extractors-siegfried - ken - Default Job #1 (CATS-EXSF2-JOB1-1) simple 03-Feb-2017 16:00:50 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 03-Feb-2017 16:00:50 Updating source code to revision: 655a17ead06484b0a921b614a84a9c7262ad732b simple 03-Feb-2017 16:00:50 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXSF2-JOB1/.git'. simple 03-Feb-2017 16:00:50 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXSF2-JOB1/.git/ simple 03-Feb-2017 16:00:50 Fetching 'refs/heads/ken' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-siegfried.git'. Will try to do a shallow fetch. simple 03-Feb-2017 16:00:50 Warning: Permanently added '[127.0.0.1]:50740' (RSA) to the list of known hosts. simple 03-Feb-2017 16:00:51 From ssh://127.0.0.1:50740/cats/extractors-siegfried simple 03-Feb-2017 16:00:51 * [new branch] ken -> ken simple 03-Feb-2017 16:00:51 Checking out revision 655a17ead06484b0a921b614a84a9c7262ad732b. simple 03-Feb-2017 16:00:51 Switched to branch 'ken' simple 03-Feb-2017 16:00:51 Updated source code to revision: 655a17ead06484b0a921b614a84a9c7262ad732b simple 03-Feb-2017 16:00:51 Finished task 'Checkout Default Repository' with result: Success simple 03-Feb-2017 16:00:51 Running pre-build action: VCS Version Collector simple 03-Feb-2017 16:00:51 Starting task 'docker build' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 03-Feb-2017 16:00:51 Beginning to execute external process for build 'Clowder - extractors-siegfried - ken - Default Job #1 (CATS-EXSF2-JOB1-1)'\n ... running command line: \n/bin/sh docker.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXSF2-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=ken\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_repository_137134107_git_username=\nbamboo_repository_revision_number=655a17ead06484b0a921b614a84a9c7262ad732b\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-EXSF2-JOB1-1\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_planRepository_1_name=extractors-siegfried\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXSF2-JOB1\nbamboo_buildKey=CATS-EXSF2-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=ken\nbamboo_repository_137134107_revision_number=655a17ead06484b0a921b614a84a9c7262ad732b\nbamboo_planRepository_name=extractors-siegfried\nbamboo_buildNumber=1\nbamboo_capability_system_builder_nodejs_Node_js_v6_9_1=/home/bamboo/node-v6.9.1\nbamboo_capability_system_builder_nodejs_Node_js_v0_10_28=/home/bamboo/node-v0.10.28\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-EXSF2-JOB1-1\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-siegfried.git\nbamboo_agentId=108560385\nbamboo_planName=Clowder - extractors-siegfried - ken\nbamboo_shortPlanKey=EXSF2\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_planRepository_revision=655a17ead06484b0a921b614a84a9c7262ad732b\nbamboo_buildTimeStamp=2017-02-03T15:55:53.258-06:00\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_buildResultKey=CATS-EXSF2-JOB1-1\nbamboo_repository_git_branch=ken\nbamboo_repository_branch_name=ken\nbamboo_buildPlanName=Clowder - extractors-siegfried - ken - Default Job\nbamboo_planRepository_1_revision=655a17ead06484b0a921b614a84a9c7262ad732b\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=extractors-siegfried\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_branch=ken\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=stash-rep\nbamboo_planRepository_branchName=ken\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_repository_137134107_git_branch=ken\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_repository_137134107_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-siegfried.git\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_planRepository_type=stash-rep\nbamboo_planRepository_1_username=\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-siegfried.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXSF2-JOB1\nbamboo_planKey=CATS-EXSF2\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-siegfried.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_repository_137134107_branch_name=ken\nbamboo_repository_137134107_name=extractors-siegfried\nbamboo_planRepository_1_branchName=ken\n build 03-Feb-2017 16:00:51 Sending build context to Docker daemon 145.9 kB build 03-Feb-2017 16:00:51 build 03-Feb-2017 16:00:51 Step 1 : FROM clowder/pyclowder:1 build 03-Feb-2017 16:00:52 1: Pulling from clowder/pyclowder build 03-Feb-2017 16:00:52 Digest: sha256:b84f28155e8bce63cb00a6fe03060a83a3f16d075f7000314f73d3d99f56d205 build 03-Feb-2017 16:00:52 Status: Image is up to date for clowder/pyclowder:1 build 03-Feb-2017 16:00:52 ---> 53344fae1430 build 03-Feb-2017 16:00:52 Step 2 : MAINTAINER Sandeep Satheesan build 03-Feb-2017 16:00:52 ---> Running in a771f40c2c25 build 03-Feb-2017 16:00:52 ---> 07793d7d5f93 build 03-Feb-2017 16:00:52 Removing intermediate container a771f40c2c25 build 03-Feb-2017 16:00:52 Step 3 : USER root build 03-Feb-2017 16:00:52 ---> Running in fdbf160a9162 build 03-Feb-2017 16:00:52 ---> b7ecafa1fcda build 03-Feb-2017 16:00:52 Removing intermediate container fdbf160a9162 build 03-Feb-2017 16:00:52 Step 4 : COPY bintray.key /tmp/ build 03-Feb-2017 16:00:52 ---> 8ae4fe199b81 build 03-Feb-2017 16:00:52 Removing intermediate container acd737f08e18 build 03-Feb-2017 16:00:52 Step 5 : RUN apt-key add /tmp/bintray.key build 03-Feb-2017 16:00:52 ---> Running in eb3f839d9506 build 03-Feb-2017 16:00:53 OK build 03-Feb-2017 16:00:53 ---> b9f495ff3dcb build 03-Feb-2017 16:00:53 Removing intermediate container eb3f839d9506 build 03-Feb-2017 16:00:53 Step 6 : RUN echo "deb http://dl.bintray.com/siegfried/debian wheezy main" | tee -a /etc/apt/sources.list build 03-Feb-2017 16:00:53 ---> Running in 558620ccbcb0 build 03-Feb-2017 16:00:53 deb http://dl.bintray.com/siegfried/debian wheezy main build 03-Feb-2017 16:00:54 ---> 7cc47df926ca build 03-Feb-2017 16:00:54 Removing intermediate container 558620ccbcb0 build 03-Feb-2017 16:00:54 Step 7 : RUN apt-get update && apt-get -y install siegfried build 03-Feb-2017 16:00:54 ---> Running in 3b23f1b918d9 build 03-Feb-2017 16:00:55 Ign:1 http://dl.bintray.com/siegfried/debian wheezy InRelease build 03-Feb-2017 16:00:55 Get:2 http://archive.ubuntu.com/ubuntu xenial InRelease [247 kB] build 03-Feb-2017 16:00:55 Get:3 http://dl.bintray.com/siegfried/debian wheezy Release [1839 B] build 03-Feb-2017 16:00:55 Get:4 http://dl.bintray.com/siegfried/debian wheezy Release.gpg [821 B] build 03-Feb-2017 16:00:55 Get:5 http://archive.ubuntu.com/ubuntu xenial-updates InRelease [102 kB] build 03-Feb-2017 16:00:55 Get:6 http://dl.bintray.com/siegfried/debian wheezy/main amd64 Packages [1417 B] build 03-Feb-2017 16:00:55 Get:7 http://archive.ubuntu.com/ubuntu xenial-security InRelease [102 kB] build 03-Feb-2017 16:00:55 Get:8 http://archive.ubuntu.com/ubuntu xenial/main Sources [1103 kB] build 03-Feb-2017 16:00:56 Get:9 http://archive.ubuntu.com/ubuntu xenial/restricted Sources [5179 B] build 03-Feb-2017 16:00:56 Get:10 http://archive.ubuntu.com/ubuntu xenial/universe Sources [9802 kB] build 03-Feb-2017 16:00:57 Get:11 http://archive.ubuntu.com/ubuntu xenial/main amd64 Packages [1558 kB] build 03-Feb-2017 16:00:57 Get:12 http://archive.ubuntu.com/ubuntu xenial/restricted amd64 Packages [14.1 kB] build 03-Feb-2017 16:00:57 Get:13 http://archive.ubuntu.com/ubuntu xenial/universe amd64 Packages [9827 kB] build 03-Feb-2017 16:00:58 Get:14 http://archive.ubuntu.com/ubuntu xenial-updates/main Sources [279 kB] build 03-Feb-2017 16:00:58 Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/restricted Sources [2392 B] build 03-Feb-2017 16:00:58 Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/universe Sources [152 kB] build 03-Feb-2017 16:00:58 Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 Packages [590 kB] build 03-Feb-2017 16:00:58 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/restricted amd64 Packages [12.0 kB] build 03-Feb-2017 16:00:58 Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 Packages [488 kB] build 03-Feb-2017 16:00:58 Get:20 http://archive.ubuntu.com/ubuntu xenial-security/main Sources [68.5 kB] build 03-Feb-2017 16:00:58 Get:21 http://archive.ubuntu.com/ubuntu xenial-security/restricted Sources [2392 B] build 03-Feb-2017 16:00:58 Get:22 http://archive.ubuntu.com/ubuntu xenial-security/universe Sources [20.5 kB] build 03-Feb-2017 16:00:58 Get:23 http://archive.ubuntu.com/ubuntu xenial-security/main amd64 Packages [257 kB] build 03-Feb-2017 16:00:58 Get:24 http://archive.ubuntu.com/ubuntu xenial-security/restricted amd64 Packages [12.0 kB] build 03-Feb-2017 16:00:58 Get:25 http://archive.ubuntu.com/ubuntu xenial-security/universe amd64 Packages [87.9 kB] build 03-Feb-2017 16:01:00 Fetched 24.7 MB in 5s (4814 kB/s) build 03-Feb-2017 16:01:01 Reading package lists... build 03-Feb-2017 16:01:02 Reading package lists... build 03-Feb-2017 16:01:02 Building dependency tree... build 03-Feb-2017 16:01:02 Reading state information... build 03-Feb-2017 16:01:02 The following NEW packages will be installed: build 03-Feb-2017 16:01:02 siegfried build 03-Feb-2017 16:01:02 0 upgraded, 1 newly installed, 0 to remove and 6 not upgraded. build 03-Feb-2017 16:01:02 Need to get 8549 kB of archives. build 03-Feb-2017 16:01:02 After this operation, 33.2 MB of additional disk space will be used. build 03-Feb-2017 16:01:02 Get:1 http://dl.bintray.com/siegfried/debian wheezy/main amd64 siegfried amd64 1.6.7-1 [8549 kB] build 03-Feb-2017 16:01:03 debconf: delaying package configuration, since apt-utils is not installed build 03-Feb-2017 16:01:03 Fetched 8549 kB in 0s (9243 kB/s) build 03-Feb-2017 16:01:03 Selecting previously unselected package siegfried. build 03-Feb-2017 16:01:03 (Reading database ... build 03-Feb-2017 16:01:03 (Reading database ... 5% build 03-Feb-2017 16:01:03 (Reading database ... 10% build 03-Feb-2017 16:01:03 (Reading database ... 15% build 03-Feb-2017 16:01:03 (Reading database ... 20% build 03-Feb-2017 16:01:03 (Reading database ... 25% build 03-Feb-2017 16:01:03 (Reading database ... 30% build 03-Feb-2017 16:01:03 (Reading database ... 35% build 03-Feb-2017 16:01:03 (Reading database ... 40% build 03-Feb-2017 16:01:03 (Reading database ... 45% build 03-Feb-2017 16:01:03 (Reading database ... 50% build 03-Feb-2017 16:01:03 (Reading database ... 55% build 03-Feb-2017 16:01:03 (Reading database ... 60% build 03-Feb-2017 16:01:03 (Reading database ... 65% build 03-Feb-2017 16:01:03 (Reading database ... 70% build 03-Feb-2017 16:01:03 (Reading database ... 75% build 03-Feb-2017 16:01:03 (Reading database ... 80% build 03-Feb-2017 16:01:03 (Reading database ... 85% build 03-Feb-2017 16:01:03 (Reading database ... 90% build 03-Feb-2017 16:01:03 (Reading database ... 95% build 03-Feb-2017 16:01:03 (Reading database ... 100% build 03-Feb-2017 16:01:03 (Reading database ... 8589 files and directories currently installed.) build 03-Feb-2017 16:01:03 Preparing to unpack .../siegfried_1.6.7-1_amd64.deb ... build 03-Feb-2017 16:01:03 Unpacking siegfried (1.6.7-1) ... build 03-Feb-2017 16:01:05 Setting up siegfried (1.6.7-1) ... build 03-Feb-2017 16:01:07 ---> ee9764ff930d build 03-Feb-2017 16:01:07 Removing intermediate container 3b23f1b918d9 build 03-Feb-2017 16:01:07 Step 8 : ENV RABBITMQ_URI "" RABBITMQ_EXCHANGE "clowder" RABBITMQ_VHOST "%2F" RABBITMQ_QUEUE "siegfried" MAIN_SCRIPT "siegfried.py" build 03-Feb-2017 16:01:07 ---> Running in 96ed6a03e065 build 03-Feb-2017 16:01:07 ---> 4c71bb5d4f6d build 03-Feb-2017 16:01:07 Removing intermediate container 96ed6a03e065 build 03-Feb-2017 16:01:07 Step 9 : USER clowder build 03-Feb-2017 16:01:07 ---> Running in ea8679e623ce build 03-Feb-2017 16:01:07 ---> 30a000d53d20 build 03-Feb-2017 16:01:07 Removing intermediate container ea8679e623ce build 03-Feb-2017 16:01:07 Step 10 : COPY entrypoint.sh *.py /home/clowder/ build 03-Feb-2017 16:01:08 ---> 9ff8ea366aee build 03-Feb-2017 16:01:08 Removing intermediate container b9026f342fad build 03-Feb-2017 16:01:08 Step 11 : ENTRYPOINT /home/clowder/entrypoint.sh build 03-Feb-2017 16:01:08 ---> Running in 3f7ac7466193 build 03-Feb-2017 16:01:08 ---> 07622822f30e build 03-Feb-2017 16:01:08 Removing intermediate container 3f7ac7466193 build 03-Feb-2017 16:01:08 Step 12 : CMD extractor build 03-Feb-2017 16:01:08 ---> Running in de9b82b847cc build 03-Feb-2017 16:01:08 ---> cc8d33233edc build 03-Feb-2017 16:01:08 Removing intermediate container de9b82b847cc build 03-Feb-2017 16:01:08 Successfully built cc8d33233edc error 03-Feb-2017 16:01:08 docker.sh: 82: [: ncsa: unexpected operator error 03-Feb-2017 16:01:08 docker.sh: 82: [: clowder: unexpected operator build 03-Feb-2017 16:01:08 Untagged: 5230:latest build 03-Feb-2017 16:01:08 Untagged: ncsa/extractors-siegfried:latest build 03-Feb-2017 16:01:08 Untagged: clowder/extractors-siegfried:latest build 03-Feb-2017 16:01:08 Deleted: sha256:cc8d33233edc37d5fdc8c4154b6413ff62ad8a52e403c1af432498bb5c4c4c6c build 03-Feb-2017 16:01:08 Deleted: sha256:07622822f30e9bbff652151c3c584e9fc1d59dd6ff650a1c437ba7c0b7d20273 build 03-Feb-2017 16:01:08 Deleted: sha256:9ff8ea366aee6175e941bc598d0e470d538757f816b6cd0efb70054a8bd6ed6e build 03-Feb-2017 16:01:08 Deleted: sha256:b79e19192952e4e6bae4baa13c4c85c292ee7de7b5311bbbfb500f7e480d18b5 build 03-Feb-2017 16:01:08 Deleted: sha256:30a000d53d20add42349c16b5a1af1881bd53bfd54d7bf4367efb059f3e99b44 build 03-Feb-2017 16:01:08 Deleted: sha256:4c71bb5d4f6ddec446acc32fb48b4c43ac2d75fd0b90cd169c3816017c65b05d build 03-Feb-2017 16:01:08 Deleted: sha256:ee9764ff930d100d7cce978a62fee4a55242498770f06703b22aca7110f86e7d build 03-Feb-2017 16:01:08 Deleted: sha256:08e53a4bea2085cdef8b179f661a9939bc1bdc0c0563969c867a104b4bdea316 build 03-Feb-2017 16:01:08 Deleted: sha256:7cc47df926ca838fa8df5096dc258575494ccb573d88c823161c5f374c2b3520 build 03-Feb-2017 16:01:08 Deleted: sha256:87f7d9bc50e88152cec6ffd21a403c93b25429414e0fd51f2582cbd9e4592b80 build 03-Feb-2017 16:01:08 Deleted: sha256:b9f495ff3dcbc6314eb766772f8b04d651188e819e1ffb86f44eddb26d9dde84 build 03-Feb-2017 16:01:08 Deleted: sha256:39f0a7d1d8927dfe7f96ed27c9872f0ec0d30967a08be829bedfaebeeaee935d build 03-Feb-2017 16:01:08 Deleted: sha256:8ae4fe199b818081e3d20e33921974c706be0daf2f0ffd9e144dc559c479a505 build 03-Feb-2017 16:01:08 Deleted: sha256:e8bb4722aa224de80be813fac6815dd718a554eb3300cfd0e07919d6a7a50885 build 03-Feb-2017 16:01:08 Deleted: sha256:b7ecafa1fcdad21ece59d6dc359da7b70828508c80d519f3659be1b476fa55b9 build 03-Feb-2017 16:01:08 Deleted: sha256:07793d7d5f9364b852b5a909f7c0ed14bbe24aef9d10aa77abc9cdaced9617d9 simple 03-Feb-2017 16:01:08 Finished task 'docker build' with result: Success simple 03-Feb-2017 16:01:08 Running post build plugin 'Docker Container Cleanup' simple 03-Feb-2017 16:01:08 Running post build plugin 'NCover Results Collector' simple 03-Feb-2017 16:01:08 Running post build plugin 'Clover Results Collector' simple 03-Feb-2017 16:01:08 Running post build plugin 'npm Cache Cleanup' simple 03-Feb-2017 16:01:08 Running post build plugin 'Artifact Copier' simple 03-Feb-2017 16:01:08 Finalising the build... simple 03-Feb-2017 16:01:08 Stopping timer. simple 03-Feb-2017 16:01:08 Build CATS-EXSF2-JOB1-1 completed. simple 03-Feb-2017 16:01:09 Running on server: post build plugin 'NCover Results Collector' simple 03-Feb-2017 16:01:09 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 03-Feb-2017 16:01:09 Running on server: post build plugin 'Clover Delta Calculator' simple 03-Feb-2017 16:01:09 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 03-Feb-2017 16:01:09 All post build plugins have finished simple 03-Feb-2017 16:01:09 Generating build results summary... simple 03-Feb-2017 16:01:09 Saving build results to disk... simple 03-Feb-2017 16:01:09 Logging substituted variables... simple 03-Feb-2017 16:01:09 Indexing build results... simple 03-Feb-2017 16:01:09 Finished building CATS-EXSF2-JOB1-1.