simple 28-Oct-2020 10:13:58 Build Clowder - extractors-zip - Default Job #4 (CATS-EXZIP-JOB1-4) started building on agent buildserver-2.os.ncsa.edu, bamboo version: 7.1.3 simple 28-Oct-2020 10:13:58 Remote agent on host buildserver-2.os.ncsa.edu simple 28-Oct-2020 10:13:58 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXZIP-JOB1 simple 28-Oct-2020 10:13:58 Executing build Clowder - extractors-zip - Default Job #4 (CATS-EXZIP-JOB1-4) simple 28-Oct-2020 10:13:58 Starting task 'Source Code Checkout' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 28-Oct-2020 10:13:58 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXZIP-JOB1 simple 28-Oct-2020 10:13:58 Updating source code to revision: 2f970bc457771477e80682c3a4064a03b8d6baed simple 28-Oct-2020 10:13:58 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXZIP-JOB1/.git'. simple 28-Oct-2020 10:13:58 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXZIP-JOB1/.git/ simple 28-Oct-2020 10:15:24 Fetching 'refs/heads/master' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-zip.git'. Will try to do a shallow fetch. simple 28-Oct-2020 10:15:24 Warning: Permanently added '[127.0.0.1]:34042' (RSA) to the list of known hosts. simple 28-Oct-2020 10:15:25 From ssh://127.0.0.1:34042/cats/extractors-zip simple 28-Oct-2020 10:15:25 * [new branch] master -> master simple 28-Oct-2020 10:15:25 Checking out revision 2f970bc457771477e80682c3a4064a03b8d6baed. simple 28-Oct-2020 10:15:25 fatal: reference is not a tree: 2f970bc457771477e80682c3a4064a03b8d6baed error 28-Oct-2020 10:15:25 Checkout to revision 2f970bc457771477e80682c3a4064a03b8d6baed has failed. simple 28-Oct-2020 10:15:25 Warning: failed to checkout source code to directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXZIP-JOB1', trying to recover... simple 28-Oct-2020 10:15:25 Cleaned source directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXZIP-JOB1'... simple 28-Oct-2020 10:15:25 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXZIP-JOB1/.git'. simple 28-Oct-2020 10:15:25 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXZIP-JOB1/.git/ simple 28-Oct-2020 10:15:25 Fetching 'refs/heads/master' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-zip.git'. simple 28-Oct-2020 10:15:25 Warning: Permanently added '[127.0.0.1]:34042' (RSA) to the list of known hosts. simple 28-Oct-2020 10:15:26 From ssh://127.0.0.1:34042/cats/extractors-zip simple 28-Oct-2020 10:15:26 * [new branch] master -> master simple 28-Oct-2020 10:15:26 Fetching to source directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXZIP-JOB1' completed, proceeding with checkout... simple 28-Oct-2020 10:15:26 Checking out revision 2f970bc457771477e80682c3a4064a03b8d6baed. simple 28-Oct-2020 10:15:26 Note: checking out '2f970bc457771477e80682c3a4064a03b8d6baed'. simple 28-Oct-2020 10:15:26 simple 28-Oct-2020 10:15:26 You are in 'detached HEAD' state. You can look around, make experimental simple 28-Oct-2020 10:15:26 changes and commit them, and you can discard any commits you make in this simple 28-Oct-2020 10:15:26 state without impacting any branches by performing another checkout. simple 28-Oct-2020 10:15:26 simple 28-Oct-2020 10:15:26 If you want to create a new branch to retain commits you create, you may simple 28-Oct-2020 10:15:26 do so (now or later) by using -b with the checkout command again. Example: simple 28-Oct-2020 10:15:26 simple 28-Oct-2020 10:15:26 git checkout -b simple 28-Oct-2020 10:15:26 simple 28-Oct-2020 10:15:26 HEAD is now at 2f970bc... update simple 28-Oct-2020 10:15:26 Checkout completed, recover successful. simple 28-Oct-2020 10:15:26 Updated source code to revision: 2f970bc457771477e80682c3a4064a03b8d6baed simple 28-Oct-2020 10:15:26 Finished task 'Source Code Checkout' with result: Success simple 28-Oct-2020 10:15:26 Running pre-build action: VCS Version Collector simple 28-Oct-2020 10:15:26 Starting task 'docker build' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 28-Oct-2020 10:15:26 Beginning to execute external process for build 'Clowder - extractors-zip - Default Job #4 (CATS-EXZIP-JOB1-4)'\n ... running command line: \n/bin/sh docker.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXZIP-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=master\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_planRepository_1_branchDisplayName=master\nbamboo_repository_revision_number=2f970bc457771477e80682c3a4064a03b8d6baed\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-EXZIP-JOB1-4\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXZIP-JOB1\nbamboo_planRepository_1_name=extractors-zip\nbamboo_buildKey=CATS-EXZIP-JOB1\nbamboo_repository_164986903_name=extractors-zip\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=extractors-zip\nbamboo_repository_164986903_git_username=\nbamboo_planRepository_name=extractors-zip\nbamboo_buildNumber=4\nbamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt\nbamboo_capability_system_jdk_JDK_1_8_0_252=/home/bamboo/jdk8u252-b09\nbamboo_shortJobName=Default Job\nbamboo_capability_system_builder_command_python3_6=/usr/bin/python3.6\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-EXZIP-JOB1-4\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-zip.git\nbamboo_agentId=140673028\nbamboo_planName=Clowder - extractors-zip\nbamboo_shortPlanKey=EXZIP\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_repository_164986903_revision_number=2f970bc457771477e80682c3a4064a03b8d6baed\nbamboo_repository_164986903_git_branch=master\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_builder_node_Node_js_v12_14_1=/home/bamboo/node-v12.14.1/bin/node\nbamboo_planRepository_revision=2f970bc457771477e80682c3a4064a03b8d6baed\nbamboo_buildTimeStamp=2020-10-28T10:13:57.826-05:00\nbamboo_repository_previous_revision_number=be4e310c889348b8d038c0efd778d16e6ef0c41b\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_planRepository_previousRevision=be4e310c889348b8d038c0efd778d16e6ef0c41b\nbamboo_repository_git_branch=master\nbamboo_buildResultKey=CATS-EXZIP-JOB1-4\nbamboo_repository_branch_name=master\nbamboo_buildPlanName=Clowder - extractors-zip - Default Job\nbamboo_planRepository_1_revision=2f970bc457771477e80682c3a4064a03b8d6baed\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=extractors-zip\nbamboo_buildFailed=false\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_repository_164986903_branch_name=master\nbamboo_planRepository_branch=master\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=be4e310c889348b8d038c0efd778d16e6ef0c41b\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_repository_164986903_previous_revision_number=be4e310c889348b8d038c0efd778d16e6ef0c41b\nbamboo_planRepository_branchDisplayName=master\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=master\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_repository_164986903_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-zip.git\nbamboo_plan_storageTag=plan-164790317\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-zip.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_node_Node_js_v9_3_0=/home/bamboo/node-v9.3.0/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXZIP-JOB1\nbamboo_planKey=CATS-EXZIP\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-zip.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_1_branchName=master\n build 28-Oct-2020 10:15:26 Sending build context to Docker daemon 10.75kB build 28-Oct-2020 10:15:26 build 28-Oct-2020 10:15:26 Step 1/10 : FROM python:3.7-slim build 28-Oct-2020 10:15:27 3.7-slim: Pulling from library/python build 28-Oct-2020 10:15:27 bb79b6b2107f: Pulling fs layer build 28-Oct-2020 10:15:27 35e30c3f3e2b: Pulling fs layer build 28-Oct-2020 10:15:27 aeb1daf7eb83: Pulling fs layer build 28-Oct-2020 10:15:27 0968495f5be2: Pulling fs layer build 28-Oct-2020 10:15:27 190317f62993: Pulling fs layer build 28-Oct-2020 10:15:27 0968495f5be2: Waiting build 28-Oct-2020 10:15:27 190317f62993: Waiting build 28-Oct-2020 10:15:27 35e30c3f3e2b: Verifying Checksum build 28-Oct-2020 10:15:27 35e30c3f3e2b: Download complete build 28-Oct-2020 10:15:27 0968495f5be2: Verifying Checksum build 28-Oct-2020 10:15:27 0968495f5be2: Download complete build 28-Oct-2020 10:15:27 aeb1daf7eb83: Verifying Checksum build 28-Oct-2020 10:15:27 aeb1daf7eb83: Download complete build 28-Oct-2020 10:15:27 190317f62993: Verifying Checksum build 28-Oct-2020 10:15:28 bb79b6b2107f: Verifying Checksum build 28-Oct-2020 10:15:28 bb79b6b2107f: Download complete build 28-Oct-2020 10:15:29 bb79b6b2107f: Pull complete build 28-Oct-2020 10:15:30 35e30c3f3e2b: Pull complete build 28-Oct-2020 10:15:31 aeb1daf7eb83: Pull complete build 28-Oct-2020 10:15:31 0968495f5be2: Pull complete build 28-Oct-2020 10:15:32 190317f62993: Pull complete build 28-Oct-2020 10:15:32 Digest: sha256:65de7b645c38c512c3e233c75453effbe049b6504540feebd91b8afb7a323aaa build 28-Oct-2020 10:15:32 Status: Downloaded newer image for python:3.7-slim build 28-Oct-2020 10:15:32 ---> 217e85391449 build 28-Oct-2020 10:15:32 Step 2/10 : MAINTAINER Max Burnette build 28-Oct-2020 10:15:32 ---> Running in dab29fdae9eb build 28-Oct-2020 10:15:32 Removing intermediate container dab29fdae9eb build 28-Oct-2020 10:15:32 ---> 57882a253314 build 28-Oct-2020 10:15:32 Step 3/10 : ARG VERSION="unknown" build 28-Oct-2020 10:15:33 ---> Running in edf5ddf8451b build 28-Oct-2020 10:15:33 Removing intermediate container edf5ddf8451b build 28-Oct-2020 10:15:33 ---> 985f0d62b27c build 28-Oct-2020 10:15:33 Step 4/10 : ARG BUILDNUMBER="unknown" build 28-Oct-2020 10:15:33 ---> Running in eac1668316ff build 28-Oct-2020 10:15:34 Removing intermediate container eac1668316ff build 28-Oct-2020 10:15:34 ---> d7dbda93fa4d build 28-Oct-2020 10:15:34 Step 5/10 : ARG GITSHA1="unknown" build 28-Oct-2020 10:15:34 ---> Running in 3a7701b5f2d5 build 28-Oct-2020 10:15:34 Removing intermediate container 3a7701b5f2d5 build 28-Oct-2020 10:15:34 ---> 4727656b30b8 build 28-Oct-2020 10:15:34 Step 6/10 : COPY entrypoint.sh *.py extractor_info.json requirements.txt /home/clowder/ build 28-Oct-2020 10:15:35 ---> f4213501d2b8 build 28-Oct-2020 10:15:35 Step 7/10 : RUN pip install -r /home/clowder/requirements.txt build 28-Oct-2020 10:15:35 ---> Running in e8f4cd23f90b build 28-Oct-2020 10:15:37 Collecting pyclowder==2.3.4 build 28-Oct-2020 10:15:37 Downloading pyclowder-2.3.4-py3-none-any.whl (32 kB) build 28-Oct-2020 10:15:38 Collecting requests-toolbelt==0.9.1 build 28-Oct-2020 10:15:38 Downloading requests_toolbelt-0.9.1-py2.py3-none-any.whl (54 kB) build 28-Oct-2020 10:15:38 Collecting requests==2.24.0 build 28-Oct-2020 10:15:38 Downloading requests-2.24.0-py2.py3-none-any.whl (61 kB) build 28-Oct-2020 10:15:38 Collecting PyYAML==5.1 build 28-Oct-2020 10:15:38 Downloading PyYAML-5.1.tar.gz (274 kB) build 28-Oct-2020 10:15:39 Collecting enum34==1.1.6 build 28-Oct-2020 10:15:39 Downloading enum34-1.1.6-py3-none-any.whl (12 kB) build 28-Oct-2020 10:15:39 Collecting pika==1.1.0 build 28-Oct-2020 10:15:39 Downloading pika-1.1.0-py2.py3-none-any.whl (148 kB) build 28-Oct-2020 10:15:39 Collecting idna<3,>=2.5 build 28-Oct-2020 10:15:39 Downloading idna-2.10-py2.py3-none-any.whl (58 kB) build 28-Oct-2020 10:15:39 Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 build 28-Oct-2020 10:15:40 Downloading urllib3-1.25.11-py2.py3-none-any.whl (127 kB) build 28-Oct-2020 10:15:40 Collecting certifi>=2017.4.17 build 28-Oct-2020 10:15:40 Downloading certifi-2020.6.20-py2.py3-none-any.whl (156 kB) build 28-Oct-2020 10:15:40 Collecting chardet<4,>=3.0.2 build 28-Oct-2020 10:15:40 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) build 28-Oct-2020 10:15:40 Building wheels for collected packages: PyYAML build 28-Oct-2020 10:15:40 Building wheel for PyYAML (setup.py): started build 28-Oct-2020 10:15:40 Building wheel for PyYAML (setup.py): finished with status 'done' build 28-Oct-2020 10:15:40 Created wheel for PyYAML: filename=PyYAML-5.1-cp37-cp37m-linux_x86_64.whl size=44074 sha256=ce70450ce9a7d1aede316602534e7fea1431225402048584a6e60a4bfb495a89 build 28-Oct-2020 10:15:40 Stored in directory: /root/.cache/pip/wheels/77/f5/10/d00a2bd30928b972790053b5de0c703ca87324f3fead0f2fd9 build 28-Oct-2020 10:15:40 Successfully built PyYAML build 28-Oct-2020 10:15:40 Installing collected packages: idna, urllib3, certifi, chardet, requests, requests-toolbelt, PyYAML, enum34, pika, pyclowder build 28-Oct-2020 10:15:42 Successfully installed PyYAML-5.1 certifi-2020.6.20 chardet-3.0.4 enum34-1.1.6 idna-2.10 pika-1.1.0 pyclowder-2.3.4 requests-2.24.0 requests-toolbelt-0.9.1 urllib3-1.25.11 build 28-Oct-2020 10:15:43 Removing intermediate container e8f4cd23f90b build 28-Oct-2020 10:15:43 ---> 40b704ca031b build 28-Oct-2020 10:15:43 Step 8/10 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 28-Oct-2020 10:15:43 ---> Running in 9e10b85ede3e build 28-Oct-2020 10:15:44 Removing intermediate container 9e10b85ede3e build 28-Oct-2020 10:15:44 ---> 8d6989da7cd7 build 28-Oct-2020 10:15:44 Step 9/10 : CMD ["extractor"] build 28-Oct-2020 10:15:44 ---> Running in bc612f8e7655 build 28-Oct-2020 10:15:45 Removing intermediate container bc612f8e7655 build 28-Oct-2020 10:15:45 ---> 19f82f58696b build 28-Oct-2020 10:15:45 Step 10/10 : ENV VERSION=${VERSION} BUILDNUMBER=${BUILDNUMBER} GITSHA1=${GITSHA1} RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.zip.extract2folder" MAIN_SCRIPT="ncsa.zip.extract2folder.py" build 28-Oct-2020 10:15:45 ---> Running in 2a8a26b1ad65 build 28-Oct-2020 10:15:46 Removing intermediate container 2a8a26b1ad65 build 28-Oct-2020 10:15:46 ---> 6516a10ff817 build 28-Oct-2020 10:15:46 Successfully built 6516a10ff817 build 28-Oct-2020 10:15:46 Successfully tagged clowder/extractors-extract2folder:latest build 28-Oct-2020 10:15:46 Sending build context to Docker daemon 10.24kB build 28-Oct-2020 10:15:46 build 28-Oct-2020 10:15:46 Step 1/10 : FROM python:3.7-slim build 28-Oct-2020 10:15:46 ---> 217e85391449 build 28-Oct-2020 10:15:46 Step 2/10 : MAINTAINER Max Burnette build 28-Oct-2020 10:15:46 ---> Using cache build 28-Oct-2020 10:15:46 ---> 57882a253314 build 28-Oct-2020 10:15:46 Step 3/10 : ARG VERSION="unknown" build 28-Oct-2020 10:15:46 ---> Using cache build 28-Oct-2020 10:15:46 ---> 985f0d62b27c build 28-Oct-2020 10:15:46 Step 4/10 : ARG BUILDNUMBER="unknown" build 28-Oct-2020 10:15:46 ---> Using cache build 28-Oct-2020 10:15:46 ---> d7dbda93fa4d build 28-Oct-2020 10:15:46 Step 5/10 : ARG GITSHA1="unknown" build 28-Oct-2020 10:15:46 ---> Using cache build 28-Oct-2020 10:15:46 ---> 4727656b30b8 build 28-Oct-2020 10:15:46 Step 6/10 : COPY entrypoint.sh *.py extractor_info.json requirements.txt /home/clowder/ build 28-Oct-2020 10:15:46 ---> 5bab40d318ea build 28-Oct-2020 10:15:46 Step 7/10 : RUN pip install -r /home/clowder/requirements.txt build 28-Oct-2020 10:15:47 ---> Running in fa27b473ba06 build 28-Oct-2020 10:15:49 Collecting pyclowder==2.3.4 build 28-Oct-2020 10:15:49 Downloading pyclowder-2.3.4-py3-none-any.whl (32 kB) build 28-Oct-2020 10:15:49 Collecting pika==1.1.0 build 28-Oct-2020 10:15:49 Downloading pika-1.1.0-py2.py3-none-any.whl (148 kB) build 28-Oct-2020 10:15:49 Collecting PyYAML==5.1 build 28-Oct-2020 10:15:49 Downloading PyYAML-5.1.tar.gz (274 kB) build 28-Oct-2020 10:15:50 Collecting requests-toolbelt==0.9.1 build 28-Oct-2020 10:15:50 Downloading requests_toolbelt-0.9.1-py2.py3-none-any.whl (54 kB) build 28-Oct-2020 10:15:50 Collecting enum34==1.1.6 build 28-Oct-2020 10:15:50 Downloading enum34-1.1.6-py3-none-any.whl (12 kB) build 28-Oct-2020 10:15:50 Collecting requests==2.24.0 build 28-Oct-2020 10:15:50 Downloading requests-2.24.0-py2.py3-none-any.whl (61 kB) build 28-Oct-2020 10:15:50 Collecting idna<3,>=2.5 build 28-Oct-2020 10:15:50 Downloading idna-2.10-py2.py3-none-any.whl (58 kB) build 28-Oct-2020 10:15:50 Collecting certifi>=2017.4.17 build 28-Oct-2020 10:15:50 Downloading certifi-2020.6.20-py2.py3-none-any.whl (156 kB) build 28-Oct-2020 10:15:51 Collecting chardet<4,>=3.0.2 build 28-Oct-2020 10:15:51 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) build 28-Oct-2020 10:15:51 Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 build 28-Oct-2020 10:15:51 Downloading urllib3-1.25.11-py2.py3-none-any.whl (127 kB) build 28-Oct-2020 10:15:51 Building wheels for collected packages: PyYAML build 28-Oct-2020 10:15:51 Building wheel for PyYAML (setup.py): started build 28-Oct-2020 10:15:51 Building wheel for PyYAML (setup.py): finished with status 'done' build 28-Oct-2020 10:15:51 Created wheel for PyYAML: filename=PyYAML-5.1-cp37-cp37m-linux_x86_64.whl size=44074 sha256=6b9e3b4502503330b14bb9a901c79ecf713fea490481b8a2bc4ca2fb1fb8b6a0 build 28-Oct-2020 10:15:51 Stored in directory: /root/.cache/pip/wheels/77/f5/10/d00a2bd30928b972790053b5de0c703ca87324f3fead0f2fd9 build 28-Oct-2020 10:15:51 Successfully built PyYAML build 28-Oct-2020 10:15:51 Installing collected packages: pika, PyYAML, idna, certifi, chardet, urllib3, requests, requests-toolbelt, enum34, pyclowder build 28-Oct-2020 10:15:53 Successfully installed PyYAML-5.1 certifi-2020.6.20 chardet-3.0.4 enum34-1.1.6 idna-2.10 pika-1.1.0 pyclowder-2.3.4 requests-2.24.0 requests-toolbelt-0.9.1 urllib3-1.25.11 build 28-Oct-2020 10:15:54 Removing intermediate container fa27b473ba06 build 28-Oct-2020 10:15:54 ---> b27b3dcd1e7c build 28-Oct-2020 10:15:54 Step 8/10 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 28-Oct-2020 10:15:54 ---> Running in 91d1210770e3 build 28-Oct-2020 10:15:55 Removing intermediate container 91d1210770e3 build 28-Oct-2020 10:15:55 ---> 00a5143da851 build 28-Oct-2020 10:15:55 Step 9/10 : CMD ["extractor"] build 28-Oct-2020 10:15:55 ---> Running in 702d3080bbf4 build 28-Oct-2020 10:15:55 Removing intermediate container 702d3080bbf4 build 28-Oct-2020 10:15:55 ---> 9ed0b559ae73 build 28-Oct-2020 10:15:55 Step 10/10 : ENV VERSION=${VERSION} BUILDNUMBER=${BUILDNUMBER} GITSHA1=${GITSHA1} RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.zip.inventory" MAIN_SCRIPT="ncsa.zip.inventory.py" build 28-Oct-2020 10:15:55 ---> Running in 65f2afdb84c2 build 28-Oct-2020 10:15:56 Removing intermediate container 65f2afdb84c2 build 28-Oct-2020 10:15:56 ---> f65a6a4f1ccd build 28-Oct-2020 10:15:56 Successfully built f65a6a4f1ccd build 28-Oct-2020 10:15:56 Successfully tagged clowder/extractors-inventory:latest simple 28-Oct-2020 10:15:56 Finished task 'docker build' with result: Success simple 28-Oct-2020 10:15:56 Starting task 'docker push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 28-Oct-2020 10:15:56 Beginning to execute external process for build 'Clowder - extractors-zip - Default Job #4 (CATS-EXZIP-JOB1-4)'\n ... running command line: \n/bin/sh release.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXZIP-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=master\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_planRepository_1_branchDisplayName=master\nbamboo_repository_revision_number=2f970bc457771477e80682c3a4064a03b8d6baed\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-EXZIP-JOB1-4\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXZIP-JOB1\nbamboo_planRepository_1_name=extractors-zip\nbamboo_buildKey=CATS-EXZIP-JOB1\nbamboo_repository_164986903_name=extractors-zip\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=extractors-zip\nbamboo_repository_164986903_git_username=\nbamboo_planRepository_name=extractors-zip\nbamboo_buildNumber=4\nbamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt\nbamboo_capability_system_jdk_JDK_1_8_0_252=/home/bamboo/jdk8u252-b09\nbamboo_shortJobName=Default Job\nbamboo_capability_system_builder_command_python3_6=/usr/bin/python3.6\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-EXZIP-JOB1-4\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-zip.git\nbamboo_agentId=140673028\nbamboo_planName=Clowder - extractors-zip\nbamboo_shortPlanKey=EXZIP\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_repository_164986903_revision_number=2f970bc457771477e80682c3a4064a03b8d6baed\nbamboo_repository_164986903_git_branch=master\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_builder_node_Node_js_v12_14_1=/home/bamboo/node-v12.14.1/bin/node\nbamboo_planRepository_revision=2f970bc457771477e80682c3a4064a03b8d6baed\nbamboo_buildTimeStamp=2020-10-28T10:13:57.826-05:00\nbamboo_repository_previous_revision_number=be4e310c889348b8d038c0efd778d16e6ef0c41b\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_planRepository_previousRevision=be4e310c889348b8d038c0efd778d16e6ef0c41b\nbamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_2=/bin/sh docker.sh\nbamboo_repository_git_branch=master\nbamboo_buildResultKey=CATS-EXZIP-JOB1-4\nbamboo_repository_branch_name=master\nbamboo_buildPlanName=Clowder - extractors-zip - Default Job\nbamboo_planRepository_1_revision=2f970bc457771477e80682c3a4064a03b8d6baed\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=extractors-zip\nbamboo_buildFailed=false\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_repository_164986903_branch_name=master\nbamboo_planRepository_branch=master\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=be4e310c889348b8d038c0efd778d16e6ef0c41b\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_repository_164986903_previous_revision_number=be4e310c889348b8d038c0efd778d16e6ef0c41b\nbamboo_planRepository_branchDisplayName=master\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=master\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_repository_164986903_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-zip.git\nbamboo_plan_storageTag=plan-164790317\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-zip.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_node_Node_js_v9_3_0=/home/bamboo/node-v9.3.0/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXZIP-JOB1\nbamboo_planKey=CATS-EXZIP\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-zip.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_1_branchName=master\n build 28-Oct-2020 10:15:56 Sending build context to Docker daemon 10.75kB build 28-Oct-2020 10:15:56 build 28-Oct-2020 10:15:56 Step 1/10 : FROM python:3.7-slim build 28-Oct-2020 10:15:56 ---> 217e85391449 build 28-Oct-2020 10:15:56 Step 2/10 : MAINTAINER Max Burnette build 28-Oct-2020 10:15:56 ---> Using cache build 28-Oct-2020 10:15:56 ---> 57882a253314 build 28-Oct-2020 10:15:56 Step 3/10 : ARG VERSION="unknown" build 28-Oct-2020 10:15:56 ---> Using cache build 28-Oct-2020 10:15:56 ---> 985f0d62b27c build 28-Oct-2020 10:15:56 Step 4/10 : ARG BUILDNUMBER="unknown" build 28-Oct-2020 10:15:56 ---> Using cache build 28-Oct-2020 10:15:56 ---> d7dbda93fa4d build 28-Oct-2020 10:15:56 Step 5/10 : ARG GITSHA1="unknown" build 28-Oct-2020 10:15:56 ---> Using cache build 28-Oct-2020 10:15:56 ---> 4727656b30b8 build 28-Oct-2020 10:15:56 Step 6/10 : COPY entrypoint.sh *.py extractor_info.json requirements.txt /home/clowder/ build 28-Oct-2020 10:15:56 ---> Using cache build 28-Oct-2020 10:15:56 ---> f4213501d2b8 build 28-Oct-2020 10:15:56 Step 7/10 : RUN pip install -r /home/clowder/requirements.txt build 28-Oct-2020 10:15:56 ---> Using cache build 28-Oct-2020 10:15:56 ---> 40b704ca031b build 28-Oct-2020 10:15:56 Step 8/10 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 28-Oct-2020 10:15:56 ---> Using cache build 28-Oct-2020 10:15:56 ---> 8d6989da7cd7 build 28-Oct-2020 10:15:56 Step 9/10 : CMD ["extractor"] build 28-Oct-2020 10:15:56 ---> Using cache build 28-Oct-2020 10:15:56 ---> 19f82f58696b build 28-Oct-2020 10:15:56 Step 10/10 : ENV VERSION=${VERSION} BUILDNUMBER=${BUILDNUMBER} GITSHA1=${GITSHA1} RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.zip.extract2folder" MAIN_SCRIPT="ncsa.zip.extract2folder.py" build 28-Oct-2020 10:15:56 ---> Using cache build 28-Oct-2020 10:15:56 ---> 6516a10ff817 build 28-Oct-2020 10:15:56 Successfully built 6516a10ff817 build 28-Oct-2020 10:15:56 Successfully tagged clowder/extractors-extract2folder:latest build 28-Oct-2020 10:15:56 Sending build context to Docker daemon 10.24kB build 28-Oct-2020 10:15:56 build 28-Oct-2020 10:15:57 Step 1/10 : FROM python:3.7-slim build 28-Oct-2020 10:15:57 ---> 217e85391449 build 28-Oct-2020 10:15:57 Step 2/10 : MAINTAINER Max Burnette build 28-Oct-2020 10:15:57 ---> Using cache build 28-Oct-2020 10:15:57 ---> 57882a253314 build 28-Oct-2020 10:15:57 Step 3/10 : ARG VERSION="unknown" build 28-Oct-2020 10:15:57 ---> Using cache build 28-Oct-2020 10:15:57 ---> 985f0d62b27c build 28-Oct-2020 10:15:57 Step 4/10 : ARG BUILDNUMBER="unknown" build 28-Oct-2020 10:15:57 ---> Using cache build 28-Oct-2020 10:15:57 ---> d7dbda93fa4d build 28-Oct-2020 10:15:57 Step 5/10 : ARG GITSHA1="unknown" build 28-Oct-2020 10:15:57 ---> Using cache build 28-Oct-2020 10:15:57 ---> 4727656b30b8 build 28-Oct-2020 10:15:57 Step 6/10 : COPY entrypoint.sh *.py extractor_info.json requirements.txt /home/clowder/ build 28-Oct-2020 10:15:57 ---> Using cache build 28-Oct-2020 10:15:57 ---> 5bab40d318ea build 28-Oct-2020 10:15:57 Step 7/10 : RUN pip install -r /home/clowder/requirements.txt build 28-Oct-2020 10:15:57 ---> Using cache build 28-Oct-2020 10:15:57 ---> b27b3dcd1e7c build 28-Oct-2020 10:15:57 Step 8/10 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 28-Oct-2020 10:15:57 ---> Using cache build 28-Oct-2020 10:15:57 ---> 00a5143da851 build 28-Oct-2020 10:15:57 Step 9/10 : CMD ["extractor"] build 28-Oct-2020 10:15:57 ---> Using cache build 28-Oct-2020 10:15:57 ---> 9ed0b559ae73 build 28-Oct-2020 10:15:57 Step 10/10 : ENV VERSION=${VERSION} BUILDNUMBER=${BUILDNUMBER} GITSHA1=${GITSHA1} RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.zip.inventory" MAIN_SCRIPT="ncsa.zip.inventory.py" build 28-Oct-2020 10:15:57 ---> Using cache build 28-Oct-2020 10:15:57 ---> f65a6a4f1ccd build 28-Oct-2020 10:15:57 Successfully built f65a6a4f1ccd build 28-Oct-2020 10:15:57 Successfully tagged clowder/extractors-inventory:latest simple 28-Oct-2020 10:15:57 Finished task 'docker push' with result: Success simple 28-Oct-2020 10:15:57 Running post build plugin 'Docker Container Cleanup' simple 28-Oct-2020 10:15:57 Running post build plugin 'NCover Results Collector' simple 28-Oct-2020 10:15:57 Running post build plugin 'Clover Results Collector' simple 28-Oct-2020 10:15:57 Running post build plugin 'npm Cache Cleanup' simple 28-Oct-2020 10:15:57 Running post build plugin 'Artifact Copier' simple 28-Oct-2020 10:15:57 Finalising the build... simple 28-Oct-2020 10:15:57 Stopping timer. simple 28-Oct-2020 10:15:57 Build CATS-EXZIP-JOB1-4 completed. simple 28-Oct-2020 10:15:57 Running on server: post build plugin 'NCover Results Collector' simple 28-Oct-2020 10:15:57 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 28-Oct-2020 10:15:57 Running on server: post build plugin 'Clover Delta Calculator' simple 28-Oct-2020 10:15:57 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 28-Oct-2020 10:15:57 All post build plugins have finished simple 28-Oct-2020 10:15:57 Generating build results summary... simple 28-Oct-2020 10:15:57 Saving build results to disk... simple 28-Oct-2020 10:15:57 Store variable context... simple 28-Oct-2020 10:15:57 Indexing build results... simple 28-Oct-2020 10:15:57 Finished building CATS-EXZIP-JOB1-4.