simple 12-Jul-2018 14:12:31 Build Clowder - extractors-msc - Default Job #38 (CATS-MSC-JOB1-38) started building on agent buildserver-2.os.ncsa.edu simple 12-Jul-2018 14:12:31 Remote agent on host buildserver-2.os.ncsa.edu simple 12-Jul-2018 14:12:31 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1 simple 12-Jul-2018 14:12:31 Executing build Clowder - extractors-msc - Default Job #38 (CATS-MSC-JOB1-38) simple 12-Jul-2018 14:12:31 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 12-Jul-2018 14:12:31 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1 simple 12-Jul-2018 14:12:31 Updating source code to revision: 6aaab3692bc88bb1c0016521723c45399615c5f2 simple 12-Jul-2018 14:12:31 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1/.git'. simple 12-Jul-2018 14:12:31 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1/.git/ simple 12-Jul-2018 14:12:31 Fetching 'refs/heads/master' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git'. Will try to do a shallow fetch. simple 12-Jul-2018 14:12:31 Warning: Permanently added '[127.0.0.1]:42343' (RSA) to the list of known hosts. simple 12-Jul-2018 14:12:34 From ssh://127.0.0.1:42343/cats/extractors-msc simple 12-Jul-2018 14:12:34 * [new branch] master -> master simple 12-Jul-2018 14:12:34 * [new tag] browndog_v0.2.0 -> browndog_v0.2.0 simple 12-Jul-2018 14:12:34 * [new tag] browndog_v0.3.0 -> browndog_v0.3.0 simple 12-Jul-2018 14:12:34 Checking out revision 6aaab3692bc88bb1c0016521723c45399615c5f2. simple 12-Jul-2018 14:12:34 Already on 'master' simple 12-Jul-2018 14:12:34 Updated source code to revision: 6aaab3692bc88bb1c0016521723c45399615c5f2 simple 12-Jul-2018 14:12:34 Finished task 'Checkout Default Repository' with result: Success simple 12-Jul-2018 14:12:34 Running pre-build action: VCS Version Collector simple 12-Jul-2018 14:12:34 Starting task 'docker build' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 12-Jul-2018 14:12:34 Beginning to execute external process for build 'Clowder - extractors-msc - Default Job #38 (CATS-MSC-JOB1-38)'\n ... running command line: \n/bin/sh docker.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=master\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_dependency_parent_0=CATS-PYC2-73\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_dependency_parent_total=1\nbamboo_planRepository_1_branchDisplayName=master\nbamboo_repository_revision_number=6aaab3692bc88bb1c0016521723c45399615c5f2\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-MSC-JOB1-38\nbamboo_repository_127172627_branch_name=master\nbamboo_repository_127172627_git_branch=master\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1\nbamboo_planRepository_1_name=extractors-msc\nbamboo_buildKey=CATS-MSC-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=extractors-msc\nbamboo_planRepository_name=extractors-msc\nbamboo_repository_127172627_git_username=\nbamboo_buildNumber=38\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-MSC-JOB1-38\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git\nbamboo_agentId=140673028\nbamboo_planName=Clowder - extractors-msc\nbamboo_repository_127172627_revision_number=6aaab3692bc88bb1c0016521723c45399615c5f2\nbamboo_shortPlanKey=MSC\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_shortJobKey=JOB1\nbamboo_planRepository_revision=6aaab3692bc88bb1c0016521723c45399615c5f2\nbamboo_buildTimeStamp=2018-07-12T13:40:48.659-05:00\nbamboo_repository_previous_revision_number=6aaab3692bc88bb1c0016521723c45399615c5f2\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_planRepository_previousRevision=6aaab3692bc88bb1c0016521723c45399615c5f2\nbamboo_repository_git_branch=master\nbamboo_buildResultKey=CATS-MSC-JOB1-38\nbamboo_repository_branch_name=master\nbamboo_buildPlanName=Clowder - extractors-msc - Default Job\nbamboo_planRepository_1_revision=6aaab3692bc88bb1c0016521723c45399615c5f2\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=extractors-msc\nbamboo_buildFailed=false\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_branch=master\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=6aaab3692bc88bb1c0016521723c45399615c5f2\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_repository_127172627_name=extractors-msc\nbamboo_planRepository_branchDisplayName=master\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=master\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-126976035\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git\nbamboo_repository_127172627_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1\nbamboo_planKey=CATS-MSC\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_repository_127172627_previous_revision_number=6aaab3692bc88bb1c0016521723c45399615c5f2\nbamboo_planRepository_1_branchName=master\n build 12-Jul-2018 14:12:34 Sending build context to Docker daemon 2.284MB build 12-Jul-2018 14:12:34 build 12-Jul-2018 14:12:34 Step 1/11 : FROM clowder/pyclowder:1 build 12-Jul-2018 14:12:34 1: Pulling from clowder/pyclowder build 12-Jul-2018 14:12:34 9fb6c798fa41: Pulling fs layer build 12-Jul-2018 14:12:34 3b61febd4aef: Pulling fs layer build 12-Jul-2018 14:12:34 9d99b9777eb0: Pulling fs layer build 12-Jul-2018 14:12:34 d010c8cf75d7: Pulling fs layer build 12-Jul-2018 14:12:34 7fac07fb303e: Pulling fs layer build 12-Jul-2018 14:12:34 7ed77dc4484e: Pulling fs layer build 12-Jul-2018 14:12:34 8703bf9e3153: Pulling fs layer build 12-Jul-2018 14:12:34 1797373d3c97: Pulling fs layer build 12-Jul-2018 14:12:34 bc81e92cfe84: Pulling fs layer build 12-Jul-2018 14:12:34 7ed77dc4484e: Waiting build 12-Jul-2018 14:12:34 bc81e92cfe84: Waiting build 12-Jul-2018 14:12:34 8703bf9e3153: Waiting build 12-Jul-2018 14:12:34 1797373d3c97: Waiting build 12-Jul-2018 14:12:34 d010c8cf75d7: Waiting build 12-Jul-2018 14:12:34 7fac07fb303e: Waiting build 12-Jul-2018 14:12:34 9d99b9777eb0: Verifying Checksum build 12-Jul-2018 14:12:34 9d99b9777eb0: Download complete build 12-Jul-2018 14:12:34 3b61febd4aef: Download complete build 12-Jul-2018 14:12:35 d010c8cf75d7: Verifying Checksum build 12-Jul-2018 14:12:35 d010c8cf75d7: Download complete build 12-Jul-2018 14:12:35 7fac07fb303e: Download complete build 12-Jul-2018 14:12:35 8703bf9e3153: Verifying Checksum build 12-Jul-2018 14:12:35 8703bf9e3153: Download complete build 12-Jul-2018 14:12:35 1797373d3c97: Verifying Checksum build 12-Jul-2018 14:12:35 1797373d3c97: Download complete build 12-Jul-2018 14:12:35 bc81e92cfe84: Verifying Checksum build 12-Jul-2018 14:12:35 bc81e92cfe84: Download complete build 12-Jul-2018 14:12:36 7ed77dc4484e: Verifying Checksum build 12-Jul-2018 14:12:36 7ed77dc4484e: Download complete build 12-Jul-2018 14:12:40 9fb6c798fa41: Verifying Checksum build 12-Jul-2018 14:12:40 9fb6c798fa41: Download complete build 12-Jul-2018 14:12:42 9fb6c798fa41: Pull complete build 12-Jul-2018 14:12:43 3b61febd4aef: Pull complete build 12-Jul-2018 14:12:44 9d99b9777eb0: Pull complete build 12-Jul-2018 14:12:44 d010c8cf75d7: Pull complete build 12-Jul-2018 14:12:44 7fac07fb303e: Pull complete build 12-Jul-2018 14:12:46 7ed77dc4484e: Pull complete build 12-Jul-2018 14:12:46 8703bf9e3153: Pull complete build 12-Jul-2018 14:12:47 1797373d3c97: Pull complete build 12-Jul-2018 14:12:47 bc81e92cfe84: Pull complete build 12-Jul-2018 14:12:47 Digest: sha256:c54f3dbe5c8afe1aaadf070212c982dc7b46a6c070aaed30edf17e59e5698316 build 12-Jul-2018 14:12:47 Status: Downloaded newer image for clowder/pyclowder:1 build 12-Jul-2018 14:12:47 ---> d1a9e970ed30 build 12-Jul-2018 14:12:47 Step 2/11 : MAINTAINER Rob Kooper build 12-Jul-2018 14:12:47 ---> Running in 2661df0168cb build 12-Jul-2018 14:12:48 Removing intermediate container 2661df0168cb build 12-Jul-2018 14:12:48 ---> 1ae5761b9b87 build 12-Jul-2018 14:12:48 Step 3/11 : VOLUME /matlab build 12-Jul-2018 14:12:48 ---> Running in 350e5861f72a build 12-Jul-2018 14:12:49 Removing intermediate container 350e5861f72a build 12-Jul-2018 14:12:49 ---> 331be6196635 build 12-Jul-2018 14:12:49 Step 4/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.diagnosis" MATLAB_BINARY="/matlab/bin/matlab" MAIN_SCRIPT="diagnosis.py" build 12-Jul-2018 14:12:49 ---> Running in fbcd00bc82c1 build 12-Jul-2018 14:12:49 Removing intermediate container fbcd00bc82c1 build 12-Jul-2018 14:12:49 ---> de795794b588 build 12-Jul-2018 14:12:49 Step 5/11 : USER root build 12-Jul-2018 14:12:49 ---> Running in 07da68b2c9ad build 12-Jul-2018 14:12:50 Removing intermediate container 07da68b2c9ad build 12-Jul-2018 14:12:50 ---> f43c27991c23 build 12-Jul-2018 14:12:50 Step 6/11 : RUN pip install --upgrade pip build 12-Jul-2018 14:12:51 ---> Running in 44c29db479b0 build 12-Jul-2018 14:12:52 Collecting pip build 12-Jul-2018 14:12:52 Downloading https://files.pythonhosted.org/packages/0f/74/ecd13431bcc456ed390b44c8a6e917c1820365cbebcb6a8974d1cd045ab4/pip-10.0.1-py2.py3-none-any.whl (1.3MB) build 12-Jul-2018 14:12:53 Installing collected packages: pip build 12-Jul-2018 14:12:53 Found existing installation: pip 8.1.1 build 12-Jul-2018 14:12:53 Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr build 12-Jul-2018 14:12:53 Successfully installed pip-10.0.1 build 12-Jul-2018 14:12:55 Removing intermediate container 44c29db479b0 build 12-Jul-2018 14:12:55 ---> 082251a7be19 build 12-Jul-2018 14:12:55 Step 7/11 : RUN apt-get -qq -y update && apt-get -y install libxext6 libxmu6 libxt6 wget && mkdir -p /matlab && rm -rf /var/lib/apt/lists/* build 12-Jul-2018 14:12:56 ---> Running in 59fd7da6f4fc build 12-Jul-2018 14:13:02 Reading package lists... build 12-Jul-2018 14:13:02 Building dependency tree... build 12-Jul-2018 14:13:02 Reading state information... build 12-Jul-2018 14:13:02 The following additional packages will be installed: build 12-Jul-2018 14:13:02 libice6 libidn11 libsm6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 build 12-Jul-2018 14:13:02 x11-common build 12-Jul-2018 14:13:02 The following NEW packages will be installed: build 12-Jul-2018 14:13:02 libice6 libidn11 libsm6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 build 12-Jul-2018 14:13:02 libxext6 libxmu6 libxt6 wget x11-common build 12-Jul-2018 14:13:02 0 upgraded, 13 newly installed, 0 to remove and 47 not upgraded. build 12-Jul-2018 14:13:02 Need to get 1402 kB of archives. build 12-Jul-2018 14:13:02 After this operation, 5596 kB of additional disk space will be used. build 12-Jul-2018 14:13:02 Get:1 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] build 12-Jul-2018 14:13:02 Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxdmcp6 amd64 1:1.1.2-1.1 [11.0 kB] build 12-Jul-2018 14:13:02 Get:3 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb1 amd64 1.11.1-1ubuntu1 [40.0 kB] build 12-Jul-2018 14:13:02 Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 libx11-data all 2:1.6.3-1ubuntu2 [113 kB] build 12-Jul-2018 14:13:02 Get:5 http://archive.ubuntu.com/ubuntu xenial/main amd64 libx11-6 amd64 2:1.6.3-1ubuntu2 [571 kB] build 12-Jul-2018 14:13:03 Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB] build 12-Jul-2018 14:13:03 Get:7 http://archive.ubuntu.com/ubuntu xenial/main amd64 x11-common all 1:7.7+13ubuntu3 [22.4 kB] build 12-Jul-2018 14:13:03 Get:8 http://archive.ubuntu.com/ubuntu xenial/main amd64 libice6 amd64 2:1.0.9-1 [39.2 kB] build 12-Jul-2018 14:13:03 Get:9 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB] build 12-Jul-2018 14:13:03 Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libidn11 amd64 1.32-3ubuntu1.2 [46.5 kB] build 12-Jul-2018 14:13:03 Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 wget amd64 1.17.1-1ubuntu1.4 [299 kB] build 12-Jul-2018 14:13:03 Get:12 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxt6 amd64 1:1.1.5-0ubuntu1 [160 kB] build 12-Jul-2018 14:13:03 Get:13 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxmu6 amd64 2:1.1.2-2 [46.0 kB] build 12-Jul-2018 14:13:03 debconf: delaying package configuration, since apt-utils is not installed build 12-Jul-2018 14:13:03 Fetched 1402 kB in 0s (1586 kB/s) build 12-Jul-2018 14:13:03 Selecting previously unselected package libxau6:amd64. build 12-Jul-2018 14:13:03 (Reading database ... build 12-Jul-2018 14:13:03 (Reading database ... 5% build 12-Jul-2018 14:13:03 (Reading database ... 10% build 12-Jul-2018 14:13:03 (Reading database ... 15% build 12-Jul-2018 14:13:03 (Reading database ... 20% build 12-Jul-2018 14:13:03 (Reading database ... 25% build 12-Jul-2018 14:13:03 (Reading database ... 30% build 12-Jul-2018 14:13:03 (Reading database ... 35% build 12-Jul-2018 14:13:03 (Reading database ... 40% build 12-Jul-2018 14:13:03 (Reading database ... 45% build 12-Jul-2018 14:13:03 (Reading database ... 50% build 12-Jul-2018 14:13:03 (Reading database ... 55% build 12-Jul-2018 14:13:03 (Reading database ... 60% build 12-Jul-2018 14:13:03 (Reading database ... 65% build 12-Jul-2018 14:13:03 (Reading database ... 70% build 12-Jul-2018 14:13:03 (Reading database ... 75% build 12-Jul-2018 14:13:03 (Reading database ... 80% build 12-Jul-2018 14:13:03 (Reading database ... 85% build 12-Jul-2018 14:13:03 (Reading database ... 90% build 12-Jul-2018 14:13:03 (Reading database ... 95% build 12-Jul-2018 14:13:03 (Reading database ... 100% build 12-Jul-2018 14:13:03 (Reading database ... 6101 files and directories currently installed.) build 12-Jul-2018 14:13:03 Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... build 12-Jul-2018 14:13:03 Unpacking libxau6:amd64 (1:1.0.8-1) ... build 12-Jul-2018 14:13:04 Selecting previously unselected package libxdmcp6:amd64. build 12-Jul-2018 14:13:04 Preparing to unpack .../libxdmcp6_1%3a1.1.2-1.1_amd64.deb ... build 12-Jul-2018 14:13:04 Unpacking libxdmcp6:amd64 (1:1.1.2-1.1) ... build 12-Jul-2018 14:13:04 Selecting previously unselected package libxcb1:amd64. build 12-Jul-2018 14:13:04 Preparing to unpack .../libxcb1_1.11.1-1ubuntu1_amd64.deb ... build 12-Jul-2018 14:13:05 Unpacking libxcb1:amd64 (1.11.1-1ubuntu1) ... build 12-Jul-2018 14:13:05 Selecting previously unselected package libx11-data. build 12-Jul-2018 14:13:05 Preparing to unpack .../libx11-data_2%3a1.6.3-1ubuntu2_all.deb ... build 12-Jul-2018 14:13:05 Unpacking libx11-data (2:1.6.3-1ubuntu2) ... build 12-Jul-2018 14:13:07 Selecting previously unselected package libx11-6:amd64. build 12-Jul-2018 14:13:07 Preparing to unpack .../libx11-6_2%3a1.6.3-1ubuntu2_amd64.deb ... build 12-Jul-2018 14:13:07 Unpacking libx11-6:amd64 (2:1.6.3-1ubuntu2) ... build 12-Jul-2018 14:13:07 Selecting previously unselected package libxext6:amd64. build 12-Jul-2018 14:13:07 Preparing to unpack .../libxext6_2%3a1.3.3-1_amd64.deb ... build 12-Jul-2018 14:13:07 Unpacking libxext6:amd64 (2:1.3.3-1) ... build 12-Jul-2018 14:13:08 Selecting previously unselected package x11-common. build 12-Jul-2018 14:13:08 Preparing to unpack .../x11-common_1%3a7.7+13ubuntu3_all.deb ... build 12-Jul-2018 14:13:08 Unpacking x11-common (1:7.7+13ubuntu3) ... build 12-Jul-2018 14:13:09 Selecting previously unselected package libice6:amd64. build 12-Jul-2018 14:13:09 Preparing to unpack .../libice6_2%3a1.0.9-1_amd64.deb ... build 12-Jul-2018 14:13:09 Unpacking libice6:amd64 (2:1.0.9-1) ... build 12-Jul-2018 14:13:10 Selecting previously unselected package libsm6:amd64. build 12-Jul-2018 14:13:10 Preparing to unpack .../libsm6_2%3a1.2.2-1_amd64.deb ... build 12-Jul-2018 14:13:10 Unpacking libsm6:amd64 (2:1.2.2-1) ... build 12-Jul-2018 14:13:11 Selecting previously unselected package libidn11:amd64. build 12-Jul-2018 14:13:11 Preparing to unpack .../libidn11_1.32-3ubuntu1.2_amd64.deb ... build 12-Jul-2018 14:13:11 Unpacking libidn11:amd64 (1.32-3ubuntu1.2) ... build 12-Jul-2018 14:13:11 Selecting previously unselected package wget. build 12-Jul-2018 14:13:11 Preparing to unpack .../wget_1.17.1-1ubuntu1.4_amd64.deb ... build 12-Jul-2018 14:13:11 Unpacking wget (1.17.1-1ubuntu1.4) ... build 12-Jul-2018 14:13:12 Selecting previously unselected package libxt6:amd64. build 12-Jul-2018 14:13:12 Preparing to unpack .../libxt6_1%3a1.1.5-0ubuntu1_amd64.deb ... build 12-Jul-2018 14:13:12 Unpacking libxt6:amd64 (1:1.1.5-0ubuntu1) ... build 12-Jul-2018 14:13:14 Selecting previously unselected package libxmu6:amd64. build 12-Jul-2018 14:13:14 Preparing to unpack .../libxmu6_2%3a1.1.2-2_amd64.deb ... build 12-Jul-2018 14:13:14 Unpacking libxmu6:amd64 (2:1.1.2-2) ... build 12-Jul-2018 14:13:15 Processing triggers for libc-bin (2.23-0ubuntu9) ... build 12-Jul-2018 14:13:16 Processing triggers for systemd (229-4ubuntu19) ... build 12-Jul-2018 14:13:16 Setting up libxau6:amd64 (1:1.0.8-1) ... build 12-Jul-2018 14:13:17 Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... build 12-Jul-2018 14:13:17 Setting up libxcb1:amd64 (1.11.1-1ubuntu1) ... build 12-Jul-2018 14:13:17 Setting up libx11-data (2:1.6.3-1ubuntu2) ... build 12-Jul-2018 14:13:17 Setting up libx11-6:amd64 (2:1.6.3-1ubuntu2) ... build 12-Jul-2018 14:13:18 Setting up libxext6:amd64 (2:1.3.3-1) ... build 12-Jul-2018 14:13:18 Setting up x11-common (1:7.7+13ubuntu3) ... build 12-Jul-2018 14:13:21 debconf: unable to initialize frontend: Dialog build 12-Jul-2018 14:13:21 debconf: (TERM is not set, so the dialog frontend is not usable.) build 12-Jul-2018 14:13:21 debconf: falling back to frontend: Readline build 12-Jul-2018 14:13:21 debconf: unable to initialize frontend: Readline build 12-Jul-2018 14:13:21 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) build 12-Jul-2018 14:13:21 debconf: falling back to frontend: Teletype build 12-Jul-2018 14:13:21 update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults build 12-Jul-2018 14:13:21 invoke-rc.d: could not determine current runlevel build 12-Jul-2018 14:13:21 invoke-rc.d: policy-rc.d denied execution of start. build 12-Jul-2018 14:13:21 Setting up libice6:amd64 (2:1.0.9-1) ... build 12-Jul-2018 14:13:22 Setting up libsm6:amd64 (2:1.2.2-1) ... build 12-Jul-2018 14:13:22 Setting up libidn11:amd64 (1.32-3ubuntu1.2) ... build 12-Jul-2018 14:13:23 Setting up wget (1.17.1-1ubuntu1.4) ... build 12-Jul-2018 14:13:23 Setting up libxt6:amd64 (1:1.1.5-0ubuntu1) ... build 12-Jul-2018 14:13:23 Setting up libxmu6:amd64 (2:1.1.2-2) ... build 12-Jul-2018 14:13:23 Processing triggers for libc-bin (2.23-0ubuntu9) ... build 12-Jul-2018 14:13:24 Processing triggers for systemd (229-4ubuntu19) ... build 12-Jul-2018 14:13:25 Removing intermediate container 59fd7da6f4fc build 12-Jul-2018 14:13:25 ---> d49db99d0077 build 12-Jul-2018 14:13:25 Step 8/11 : USER clowder build 12-Jul-2018 14:13:25 ---> Running in af1d5be62fe4 build 12-Jul-2018 14:13:26 Removing intermediate container af1d5be62fe4 build 12-Jul-2018 14:13:26 ---> b48deeb59a45 build 12-Jul-2018 14:13:26 Step 9/11 : COPY entrypoint.sh *.py *.m data/*.mat *.json /home/clowder/ build 12-Jul-2018 14:13:27 ---> 7e079c919b9a build 12-Jul-2018 14:13:27 Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 12-Jul-2018 14:13:27 ---> Running in 0009a942fe50 build 12-Jul-2018 14:13:28 Removing intermediate container 0009a942fe50 build 12-Jul-2018 14:13:28 ---> 7100bf64b4ad build 12-Jul-2018 14:13:28 Step 11/11 : CMD ["extractor"] build 12-Jul-2018 14:13:28 ---> Running in f7da38904459 build 12-Jul-2018 14:13:28 Removing intermediate container f7da38904459 build 12-Jul-2018 14:13:28 ---> 9ad814c64136 build 12-Jul-2018 14:13:28 Successfully built 9ad814c64136 build 12-Jul-2018 14:13:29 Successfully tagged 6184:latest build 12-Jul-2018 14:13:29 The push refers to repository [docker.io/clowder/extractors-msc-kidney] build 12-Jul-2018 14:13:29 348f612055a3: Preparing build 12-Jul-2018 14:13:29 0418e9eae634: Preparing build 12-Jul-2018 14:13:29 43645af78199: Preparing build 12-Jul-2018 14:13:29 0cdb02ac1d86: Preparing build 12-Jul-2018 14:13:29 f2297bdfc824: Preparing build 12-Jul-2018 14:13:29 0fbe2bcb1bf9: Preparing build 12-Jul-2018 14:13:29 59669fcdd5eb: Preparing build 12-Jul-2018 14:13:29 7f7a065d245a: Preparing build 12-Jul-2018 14:13:29 f96e6b25195f: Preparing build 12-Jul-2018 14:13:29 c56153825175: Preparing build 12-Jul-2018 14:13:29 ae620432889d: Preparing build 12-Jul-2018 14:13:29 a2022691bf95: Preparing build 12-Jul-2018 14:13:29 0fbe2bcb1bf9: Waiting build 12-Jul-2018 14:13:29 c56153825175: Waiting build 12-Jul-2018 14:13:29 ae620432889d: Waiting build 12-Jul-2018 14:13:29 59669fcdd5eb: Waiting build 12-Jul-2018 14:13:29 a2022691bf95: Waiting build 12-Jul-2018 14:13:29 7f7a065d245a: Waiting build 12-Jul-2018 14:13:29 f96e6b25195f: Waiting build 12-Jul-2018 14:13:29 f2297bdfc824: Layer already exists build 12-Jul-2018 14:13:29 0cdb02ac1d86: Layer already exists build 12-Jul-2018 14:13:30 0fbe2bcb1bf9: Layer already exists build 12-Jul-2018 14:13:30 59669fcdd5eb: Layer already exists build 12-Jul-2018 14:13:30 7f7a065d245a: Layer already exists build 12-Jul-2018 14:13:30 f96e6b25195f: Layer already exists build 12-Jul-2018 14:13:30 c56153825175: Layer already exists build 12-Jul-2018 14:13:30 ae620432889d: Layer already exists build 12-Jul-2018 14:13:30 a2022691bf95: Layer already exists build 12-Jul-2018 14:13:31 348f612055a3: Pushed build 12-Jul-2018 14:13:31 0418e9eae634: Pushed build 12-Jul-2018 14:13:31 43645af78199: Pushed build 12-Jul-2018 14:13:33 browndog_v0.2.0: digest: sha256:e7848692da0aa93013ebe4f3e02dc423c4cb2c32b4a80947bfab62398726ce1d size: 2826 build 12-Jul-2018 14:13:33 The push refers to repository [docker.io/clowder/extractors-msc-kidney] build 12-Jul-2018 14:13:33 348f612055a3: Preparing build 12-Jul-2018 14:13:33 0418e9eae634: Preparing build 12-Jul-2018 14:13:33 43645af78199: Preparing build 12-Jul-2018 14:13:33 0cdb02ac1d86: Preparing build 12-Jul-2018 14:13:33 f2297bdfc824: Preparing build 12-Jul-2018 14:13:33 0fbe2bcb1bf9: Preparing build 12-Jul-2018 14:13:33 59669fcdd5eb: Preparing build 12-Jul-2018 14:13:33 7f7a065d245a: Preparing build 12-Jul-2018 14:13:33 f96e6b25195f: Preparing build 12-Jul-2018 14:13:33 c56153825175: Preparing build 12-Jul-2018 14:13:33 ae620432889d: Preparing build 12-Jul-2018 14:13:33 a2022691bf95: Preparing build 12-Jul-2018 14:13:33 7f7a065d245a: Waiting build 12-Jul-2018 14:13:33 f96e6b25195f: Waiting build 12-Jul-2018 14:13:33 c56153825175: Waiting build 12-Jul-2018 14:13:33 ae620432889d: Waiting build 12-Jul-2018 14:13:33 0fbe2bcb1bf9: Waiting build 12-Jul-2018 14:13:33 a2022691bf95: Waiting build 12-Jul-2018 14:13:33 59669fcdd5eb: Waiting build 12-Jul-2018 14:13:34 0418e9eae634: Layer already exists build 12-Jul-2018 14:13:34 43645af78199: Layer already exists build 12-Jul-2018 14:13:34 348f612055a3: Layer already exists build 12-Jul-2018 14:13:34 0cdb02ac1d86: Layer already exists build 12-Jul-2018 14:13:34 f2297bdfc824: Layer already exists build 12-Jul-2018 14:13:34 0fbe2bcb1bf9: Layer already exists build 12-Jul-2018 14:13:34 59669fcdd5eb: Layer already exists build 12-Jul-2018 14:13:34 7f7a065d245a: Layer already exists build 12-Jul-2018 14:13:34 f96e6b25195f: Layer already exists build 12-Jul-2018 14:13:34 c56153825175: Layer already exists build 12-Jul-2018 14:13:34 ae620432889d: Layer already exists build 12-Jul-2018 14:13:34 a2022691bf95: Layer already exists build 12-Jul-2018 14:13:34 browndog_v0.3.0: digest: sha256:e7848692da0aa93013ebe4f3e02dc423c4cb2c32b4a80947bfab62398726ce1d size: 2826 build 12-Jul-2018 14:13:35 The push refers to repository [docker.io/clowder/extractors-msc-kidney] build 12-Jul-2018 14:13:35 348f612055a3: Preparing build 12-Jul-2018 14:13:35 0418e9eae634: Preparing build 12-Jul-2018 14:13:35 43645af78199: Preparing build 12-Jul-2018 14:13:35 0cdb02ac1d86: Preparing build 12-Jul-2018 14:13:35 f2297bdfc824: Preparing build 12-Jul-2018 14:13:35 0fbe2bcb1bf9: Preparing build 12-Jul-2018 14:13:35 59669fcdd5eb: Preparing build 12-Jul-2018 14:13:35 7f7a065d245a: Preparing build 12-Jul-2018 14:13:35 f96e6b25195f: Preparing build 12-Jul-2018 14:13:35 c56153825175: Preparing build 12-Jul-2018 14:13:35 ae620432889d: Preparing build 12-Jul-2018 14:13:35 a2022691bf95: Preparing build 12-Jul-2018 14:13:35 f96e6b25195f: Waiting build 12-Jul-2018 14:13:35 c56153825175: Waiting build 12-Jul-2018 14:13:35 ae620432889d: Waiting build 12-Jul-2018 14:13:35 a2022691bf95: Waiting build 12-Jul-2018 14:13:35 0fbe2bcb1bf9: Waiting build 12-Jul-2018 14:13:35 59669fcdd5eb: Waiting build 12-Jul-2018 14:13:35 7f7a065d245a: Waiting build 12-Jul-2018 14:13:35 348f612055a3: Layer already exists build 12-Jul-2018 14:13:35 43645af78199: Layer already exists build 12-Jul-2018 14:13:35 0cdb02ac1d86: Layer already exists build 12-Jul-2018 14:13:35 0418e9eae634: Layer already exists build 12-Jul-2018 14:13:35 f2297bdfc824: Layer already exists build 12-Jul-2018 14:13:35 7f7a065d245a: Layer already exists build 12-Jul-2018 14:13:35 59669fcdd5eb: Layer already exists build 12-Jul-2018 14:13:35 c56153825175: Layer already exists build 12-Jul-2018 14:13:35 f96e6b25195f: Layer already exists build 12-Jul-2018 14:13:35 0fbe2bcb1bf9: Layer already exists build 12-Jul-2018 14:13:36 ae620432889d: Layer already exists build 12-Jul-2018 14:13:36 a2022691bf95: Layer already exists build 12-Jul-2018 14:13:36 latest: digest: sha256:e7848692da0aa93013ebe4f3e02dc423c4cb2c32b4a80947bfab62398726ce1d size: 2826 build 12-Jul-2018 14:13:36 Untagged: 6184:latest build 12-Jul-2018 14:13:36 Sending build context to Docker daemon 67.07kB build 12-Jul-2018 14:13:36 build 12-Jul-2018 14:13:36 Step 1/11 : FROM clowder/pyclowder:1 build 12-Jul-2018 14:13:36 ---> d1a9e970ed30 build 12-Jul-2018 14:13:36 Step 2/11 : MAINTAINER Yan Zhao build 12-Jul-2018 14:13:36 ---> Running in 70b00e8cff98 build 12-Jul-2018 14:13:37 Removing intermediate container 70b00e8cff98 build 12-Jul-2018 14:13:37 ---> 1b1daf5ef823 build 12-Jul-2018 14:13:37 Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.IsletExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Islet.py" build 12-Jul-2018 14:13:37 ---> Running in f2c863e74fbe build 12-Jul-2018 14:13:38 Removing intermediate container f2c863e74fbe build 12-Jul-2018 14:13:38 ---> 09f8b6e1e832 build 12-Jul-2018 14:13:38 Step 4/11 : USER root build 12-Jul-2018 14:13:38 ---> Running in da285e473453 build 12-Jul-2018 14:13:38 Removing intermediate container da285e473453 build 12-Jul-2018 14:13:38 ---> 493b13c7548d build 12-Jul-2018 14:13:38 Step 5/11 : COPY requirements.txt /home/clowder/ build 12-Jul-2018 14:13:39 ---> 480255bc34dc build 12-Jul-2018 14:13:39 Step 6/11 : RUN pip install --upgrade pip build 12-Jul-2018 14:13:39 ---> Running in 0d6392a002ac build 12-Jul-2018 14:13:41 Collecting pip build 12-Jul-2018 14:13:41 Downloading https://files.pythonhosted.org/packages/0f/74/ecd13431bcc456ed390b44c8a6e917c1820365cbebcb6a8974d1cd045ab4/pip-10.0.1-py2.py3-none-any.whl (1.3MB) build 12-Jul-2018 14:13:41 Installing collected packages: pip build 12-Jul-2018 14:13:41 Found existing installation: pip 8.1.1 build 12-Jul-2018 14:13:41 Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr build 12-Jul-2018 14:13:42 Successfully installed pip-10.0.1 build 12-Jul-2018 14:13:44 Removing intermediate container 0d6392a002ac build 12-Jul-2018 14:13:44 ---> 81b12ee1fb0a build 12-Jul-2018 14:13:44 Step 7/11 : RUN pip install -r /home/clowder/requirements.txt build 12-Jul-2018 14:13:44 ---> Running in 5c14543fc9b1 build 12-Jul-2018 14:13:45 Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) build 12-Jul-2018 14:13:45 Collecting openpyxl==1.6.2 (from -r /home/clowder/requirements.txt (line 2)) build 12-Jul-2018 14:13:45 Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) build 12-Jul-2018 14:13:46 Collecting pika==0.9.14 (from -r /home/clowder/requirements.txt (line 3)) build 12-Jul-2018 14:13:46 Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) build 12-Jul-2018 14:13:46 Collecting pymongo==3.2.1 (from -r /home/clowder/requirements.txt (line 4)) build 12-Jul-2018 14:13:46 Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) build 12-Jul-2018 14:13:47 Collecting pytz==2014.3 (from -r /home/clowder/requirements.txt (line 5)) build 12-Jul-2018 14:13:47 Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) build 12-Jul-2018 14:13:47 Collecting requests==2.2.1 (from -r /home/clowder/requirements.txt (line 6)) build 12-Jul-2018 14:13:47 Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) build 12-Jul-2018 14:13:47 Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) build 12-Jul-2018 14:13:47 Collecting xlrd==0.9.3 (from -r /home/clowder/requirements.txt (line 8)) build 12-Jul-2018 14:13:48 Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) build 12-Jul-2018 14:13:48 Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd build 12-Jul-2018 14:13:48 Running setup.py install for openpyxl: started build 12-Jul-2018 14:13:48 Running setup.py install for openpyxl: finished with status 'done' build 12-Jul-2018 14:13:48 Found existing installation: pika 0.11.0 build 12-Jul-2018 14:13:48 Uninstalling pika-0.11.0: build 12-Jul-2018 14:13:51 Successfully uninstalled pika-0.11.0 build 12-Jul-2018 14:13:51 Running setup.py install for pika: started build 12-Jul-2018 14:13:52 Running setup.py install for pika: finished with status 'done' build 12-Jul-2018 14:13:52 Running setup.py install for pymongo: started build 12-Jul-2018 14:13:52 Running setup.py install for pymongo: finished with status 'done' build 12-Jul-2018 14:13:52 Running setup.py install for pytz: started build 12-Jul-2018 14:13:52 Running setup.py install for pytz: finished with status 'done' build 12-Jul-2018 14:13:52 Found existing installation: requests 2.18.4 build 12-Jul-2018 14:13:52 Uninstalling requests-2.18.4: build 12-Jul-2018 14:13:56 Successfully uninstalled requests-2.18.4 build 12-Jul-2018 14:13:56 Running setup.py install for xlrd: started build 12-Jul-2018 14:13:56 Running setup.py install for xlrd: finished with status 'done' build 12-Jul-2018 14:13:56 Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 build 12-Jul-2018 14:13:58 Removing intermediate container 5c14543fc9b1 build 12-Jul-2018 14:13:58 ---> 5b3bd244f33c build 12-Jul-2018 14:13:58 Step 8/11 : USER clowder build 12-Jul-2018 14:13:58 ---> Running in 600b2e66c4c4 build 12-Jul-2018 14:13:59 Removing intermediate container 600b2e66c4c4 build 12-Jul-2018 14:13:59 ---> b540b99ca2bc build 12-Jul-2018 14:13:59 Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ build 12-Jul-2018 14:14:01 ---> 72968d1ec1f9 build 12-Jul-2018 14:14:01 Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 12-Jul-2018 14:14:01 ---> Running in 1ee8787a68f3 build 12-Jul-2018 14:14:01 Removing intermediate container 1ee8787a68f3 build 12-Jul-2018 14:14:01 ---> 024fb0ae82fa build 12-Jul-2018 14:14:01 Step 11/11 : CMD ["extractor"] build 12-Jul-2018 14:14:01 ---> Running in 237a25783b4a build 12-Jul-2018 14:14:02 Removing intermediate container 237a25783b4a build 12-Jul-2018 14:14:02 ---> 01179f1dfd70 build 12-Jul-2018 14:14:02 Successfully built 01179f1dfd70 build 12-Jul-2018 14:14:02 Successfully tagged 6184:latest build 12-Jul-2018 14:14:02 The push refers to repository [docker.io/clowder/extractors-msc-islet] build 12-Jul-2018 14:14:02 7df031fbf90f: Preparing build 12-Jul-2018 14:14:02 cc459a36f3f4: Preparing build 12-Jul-2018 14:14:02 220fcddb886b: Preparing build 12-Jul-2018 14:14:02 f62e4ab8310e: Preparing build 12-Jul-2018 14:14:02 0cdb02ac1d86: Preparing build 12-Jul-2018 14:14:02 f2297bdfc824: Preparing build 12-Jul-2018 14:14:02 0fbe2bcb1bf9: Preparing build 12-Jul-2018 14:14:02 59669fcdd5eb: Preparing build 12-Jul-2018 14:14:02 7f7a065d245a: Preparing build 12-Jul-2018 14:14:02 f96e6b25195f: Preparing build 12-Jul-2018 14:14:02 c56153825175: Preparing build 12-Jul-2018 14:14:02 ae620432889d: Preparing build 12-Jul-2018 14:14:02 a2022691bf95: Preparing build 12-Jul-2018 14:14:02 f2297bdfc824: Waiting build 12-Jul-2018 14:14:02 c56153825175: Waiting build 12-Jul-2018 14:14:02 7f7a065d245a: Waiting build 12-Jul-2018 14:14:02 ae620432889d: Waiting build 12-Jul-2018 14:14:02 f96e6b25195f: Waiting build 12-Jul-2018 14:14:02 0fbe2bcb1bf9: Waiting build 12-Jul-2018 14:14:02 a2022691bf95: Waiting build 12-Jul-2018 14:14:02 59669fcdd5eb: Waiting build 12-Jul-2018 14:14:03 0cdb02ac1d86: Layer already exists build 12-Jul-2018 14:14:03 f2297bdfc824: Layer already exists build 12-Jul-2018 14:14:03 0fbe2bcb1bf9: Layer already exists build 12-Jul-2018 14:14:08 59669fcdd5eb: Layer already exists build 12-Jul-2018 14:14:08 f62e4ab8310e: Pushed build 12-Jul-2018 14:14:08 7f7a065d245a: Layer already exists build 12-Jul-2018 14:14:09 f96e6b25195f: Layer already exists build 12-Jul-2018 14:14:09 c56153825175: Layer already exists build 12-Jul-2018 14:14:09 ae620432889d: Layer already exists build 12-Jul-2018 14:14:09 cc459a36f3f4: Pushed build 12-Jul-2018 14:14:09 a2022691bf95: Layer already exists build 12-Jul-2018 14:14:09 7df031fbf90f: Pushed build 12-Jul-2018 14:14:09 220fcddb886b: Pushed build 12-Jul-2018 14:14:13 browndog_v0.2.0: digest: sha256:5d6ae4fc3fe144d68ff5442056ea5376ca5190974604ea79c17f1691d6dbc6ba size: 3031 build 12-Jul-2018 14:14:13 The push refers to repository [docker.io/clowder/extractors-msc-islet] build 12-Jul-2018 14:14:13 7df031fbf90f: Preparing build 12-Jul-2018 14:14:13 cc459a36f3f4: Preparing build 12-Jul-2018 14:14:13 220fcddb886b: Preparing build 12-Jul-2018 14:14:13 f62e4ab8310e: Preparing build 12-Jul-2018 14:14:13 0cdb02ac1d86: Preparing build 12-Jul-2018 14:14:13 f2297bdfc824: Preparing build 12-Jul-2018 14:14:13 0fbe2bcb1bf9: Preparing build 12-Jul-2018 14:14:13 59669fcdd5eb: Preparing build 12-Jul-2018 14:14:13 7f7a065d245a: Preparing build 12-Jul-2018 14:14:13 f96e6b25195f: Preparing build 12-Jul-2018 14:14:13 c56153825175: Preparing build 12-Jul-2018 14:14:13 ae620432889d: Preparing build 12-Jul-2018 14:14:13 a2022691bf95: Preparing build 12-Jul-2018 14:14:13 59669fcdd5eb: Waiting build 12-Jul-2018 14:14:13 7f7a065d245a: Waiting build 12-Jul-2018 14:14:13 f96e6b25195f: Waiting build 12-Jul-2018 14:14:13 c56153825175: Waiting build 12-Jul-2018 14:14:13 ae620432889d: Waiting build 12-Jul-2018 14:14:13 a2022691bf95: Waiting build 12-Jul-2018 14:14:13 f2297bdfc824: Waiting build 12-Jul-2018 14:14:13 0fbe2bcb1bf9: Waiting build 12-Jul-2018 14:14:14 7df031fbf90f: Layer already exists build 12-Jul-2018 14:14:14 0cdb02ac1d86: Layer already exists build 12-Jul-2018 14:14:14 cc459a36f3f4: Layer already exists build 12-Jul-2018 14:14:14 f62e4ab8310e: Layer already exists build 12-Jul-2018 14:14:14 220fcddb886b: Layer already exists build 12-Jul-2018 14:14:14 f2297bdfc824: Layer already exists build 12-Jul-2018 14:14:14 0fbe2bcb1bf9: Layer already exists build 12-Jul-2018 14:14:14 59669fcdd5eb: Layer already exists build 12-Jul-2018 14:14:14 7f7a065d245a: Layer already exists build 12-Jul-2018 14:14:14 f96e6b25195f: Layer already exists build 12-Jul-2018 14:14:14 c56153825175: Layer already exists build 12-Jul-2018 14:14:14 a2022691bf95: Layer already exists build 12-Jul-2018 14:14:14 ae620432889d: Layer already exists build 12-Jul-2018 14:14:15 browndog_v0.3.0: digest: sha256:5d6ae4fc3fe144d68ff5442056ea5376ca5190974604ea79c17f1691d6dbc6ba size: 3031 build 12-Jul-2018 14:14:15 The push refers to repository [docker.io/clowder/extractors-msc-islet] build 12-Jul-2018 14:14:15 7df031fbf90f: Preparing build 12-Jul-2018 14:14:15 cc459a36f3f4: Preparing build 12-Jul-2018 14:14:15 220fcddb886b: Preparing build 12-Jul-2018 14:14:15 f62e4ab8310e: Preparing build 12-Jul-2018 14:14:15 0cdb02ac1d86: Preparing build 12-Jul-2018 14:14:15 f2297bdfc824: Preparing build 12-Jul-2018 14:14:15 0fbe2bcb1bf9: Preparing build 12-Jul-2018 14:14:15 59669fcdd5eb: Preparing build 12-Jul-2018 14:14:15 7f7a065d245a: Preparing build 12-Jul-2018 14:14:15 f96e6b25195f: Preparing build 12-Jul-2018 14:14:15 c56153825175: Preparing build 12-Jul-2018 14:14:15 ae620432889d: Preparing build 12-Jul-2018 14:14:15 a2022691bf95: Preparing build 12-Jul-2018 14:14:15 f2297bdfc824: Waiting build 12-Jul-2018 14:14:15 0fbe2bcb1bf9: Waiting build 12-Jul-2018 14:14:15 59669fcdd5eb: Waiting build 12-Jul-2018 14:14:15 7f7a065d245a: Waiting build 12-Jul-2018 14:14:15 f96e6b25195f: Waiting build 12-Jul-2018 14:14:15 c56153825175: Waiting build 12-Jul-2018 14:14:15 ae620432889d: Waiting build 12-Jul-2018 14:14:15 a2022691bf95: Waiting build 12-Jul-2018 14:14:15 220fcddb886b: Layer already exists build 12-Jul-2018 14:14:15 0cdb02ac1d86: Layer already exists build 12-Jul-2018 14:14:15 cc459a36f3f4: Layer already exists build 12-Jul-2018 14:14:15 f62e4ab8310e: Layer already exists build 12-Jul-2018 14:14:15 7df031fbf90f: Layer already exists build 12-Jul-2018 14:14:16 f2297bdfc824: Layer already exists build 12-Jul-2018 14:14:16 59669fcdd5eb: Layer already exists build 12-Jul-2018 14:14:16 f96e6b25195f: Layer already exists build 12-Jul-2018 14:14:16 7f7a065d245a: Layer already exists build 12-Jul-2018 14:14:16 0fbe2bcb1bf9: Layer already exists build 12-Jul-2018 14:14:16 c56153825175: Layer already exists build 12-Jul-2018 14:14:16 ae620432889d: Layer already exists build 12-Jul-2018 14:14:16 a2022691bf95: Layer already exists build 12-Jul-2018 14:14:16 latest: digest: sha256:5d6ae4fc3fe144d68ff5442056ea5376ca5190974604ea79c17f1691d6dbc6ba size: 3031 build 12-Jul-2018 14:14:16 Untagged: 6184:latest build 12-Jul-2018 14:14:16 Sending build context to Docker daemon 66.05kB build 12-Jul-2018 14:14:16 build 12-Jul-2018 14:14:16 Step 1/11 : FROM clowder/pyclowder:1 build 12-Jul-2018 14:14:16 ---> d1a9e970ed30 build 12-Jul-2018 14:14:16 Step 2/11 : MAINTAINER Yan Zhao build 12-Jul-2018 14:14:16 ---> Using cache build 12-Jul-2018 14:14:16 ---> 1b1daf5ef823 build 12-Jul-2018 14:14:16 Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.ChemCBCExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Chem.py" build 12-Jul-2018 14:14:17 ---> Running in 7dc984ca47fb build 12-Jul-2018 14:14:18 Removing intermediate container 7dc984ca47fb build 12-Jul-2018 14:14:18 ---> 587fcd69d49f build 12-Jul-2018 14:14:18 Step 4/11 : USER root build 12-Jul-2018 14:14:18 ---> Running in cb4b5ae00f74 build 12-Jul-2018 14:14:18 Removing intermediate container cb4b5ae00f74 build 12-Jul-2018 14:14:18 ---> f69145a1d0df build 12-Jul-2018 14:14:18 Step 5/11 : COPY requirements.txt /home/clowder/ build 12-Jul-2018 14:14:19 ---> e1d7194a4c4c build 12-Jul-2018 14:14:19 Step 6/11 : RUN pip install --upgrade pip build 12-Jul-2018 14:14:19 ---> Running in 27ea2b34527d build 12-Jul-2018 14:14:20 Collecting pip build 12-Jul-2018 14:14:21 Downloading https://files.pythonhosted.org/packages/0f/74/ecd13431bcc456ed390b44c8a6e917c1820365cbebcb6a8974d1cd045ab4/pip-10.0.1-py2.py3-none-any.whl (1.3MB) build 12-Jul-2018 14:14:21 Installing collected packages: pip build 12-Jul-2018 14:14:21 Found existing installation: pip 8.1.1 build 12-Jul-2018 14:14:21 Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr build 12-Jul-2018 14:14:21 Successfully installed pip-10.0.1 build 12-Jul-2018 14:14:23 Removing intermediate container 27ea2b34527d build 12-Jul-2018 14:14:23 ---> 67089b72ac0b build 12-Jul-2018 14:14:23 Step 7/11 : RUN pip install -r /home/clowder/requirements.txt build 12-Jul-2018 14:14:24 ---> Running in 1ef9ed99c84a build 12-Jul-2018 14:14:24 Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) build 12-Jul-2018 14:14:24 Collecting openpyxl==1.6.2 (from -r /home/clowder/requirements.txt (line 2)) build 12-Jul-2018 14:14:25 Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) build 12-Jul-2018 14:14:25 Collecting pika==0.9.14 (from -r /home/clowder/requirements.txt (line 3)) build 12-Jul-2018 14:14:25 Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) build 12-Jul-2018 14:14:25 Collecting pymongo==3.2.1 (from -r /home/clowder/requirements.txt (line 4)) build 12-Jul-2018 14:14:26 Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) build 12-Jul-2018 14:14:26 Collecting pytz==2014.3 (from -r /home/clowder/requirements.txt (line 5)) build 12-Jul-2018 14:14:26 Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) build 12-Jul-2018 14:14:27 Collecting requests==2.2.1 (from -r /home/clowder/requirements.txt (line 6)) build 12-Jul-2018 14:14:27 Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) build 12-Jul-2018 14:14:27 Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) build 12-Jul-2018 14:14:27 Collecting xlrd==0.9.3 (from -r /home/clowder/requirements.txt (line 8)) build 12-Jul-2018 14:14:27 Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) build 12-Jul-2018 14:14:27 Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd build 12-Jul-2018 14:14:27 Running setup.py install for openpyxl: started build 12-Jul-2018 14:14:27 Running setup.py install for openpyxl: finished with status 'done' build 12-Jul-2018 14:14:27 Found existing installation: pika 0.11.0 build 12-Jul-2018 14:14:27 Uninstalling pika-0.11.0: build 12-Jul-2018 14:14:29 Successfully uninstalled pika-0.11.0 build 12-Jul-2018 14:14:29 Running setup.py install for pika: started build 12-Jul-2018 14:14:29 Running setup.py install for pika: finished with status 'done' build 12-Jul-2018 14:14:29 Running setup.py install for pymongo: started build 12-Jul-2018 14:14:30 Running setup.py install for pymongo: finished with status 'done' build 12-Jul-2018 14:14:30 Running setup.py install for pytz: started build 12-Jul-2018 14:14:30 Running setup.py install for pytz: finished with status 'done' build 12-Jul-2018 14:14:30 Found existing installation: requests 2.18.4 build 12-Jul-2018 14:14:30 Uninstalling requests-2.18.4: build 12-Jul-2018 14:14:31 Successfully uninstalled requests-2.18.4 build 12-Jul-2018 14:14:31 Running setup.py install for xlrd: started build 12-Jul-2018 14:14:32 Running setup.py install for xlrd: finished with status 'done' build 12-Jul-2018 14:14:32 Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 build 12-Jul-2018 14:14:33 Removing intermediate container 1ef9ed99c84a build 12-Jul-2018 14:14:33 ---> cac81b86eccc build 12-Jul-2018 14:14:33 Step 8/11 : USER clowder build 12-Jul-2018 14:14:34 ---> Running in 1e3c9ff38398 build 12-Jul-2018 14:14:34 Removing intermediate container 1e3c9ff38398 build 12-Jul-2018 14:14:34 ---> 65c3b7f81fb7 build 12-Jul-2018 14:14:34 Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ build 12-Jul-2018 14:14:35 ---> 92a67dbd3288 build 12-Jul-2018 14:14:35 Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 12-Jul-2018 14:14:35 ---> Running in d6df8c0a1602 build 12-Jul-2018 14:14:35 Removing intermediate container d6df8c0a1602 build 12-Jul-2018 14:14:35 ---> 649a7eeb5b73 build 12-Jul-2018 14:14:35 Step 11/11 : CMD ["extractor"] build 12-Jul-2018 14:14:35 ---> Running in 4301aa7009a3 build 12-Jul-2018 14:14:36 Removing intermediate container 4301aa7009a3 build 12-Jul-2018 14:14:36 ---> 880e242c9d2c build 12-Jul-2018 14:14:36 Successfully built 880e242c9d2c build 12-Jul-2018 14:14:36 Successfully tagged 6184:latest build 12-Jul-2018 14:14:36 The push refers to repository [docker.io/clowder/extractors-msc-chemcbc] build 12-Jul-2018 14:14:36 a0db69d5072d: Preparing build 12-Jul-2018 14:14:36 0892292c24bf: Preparing build 12-Jul-2018 14:14:36 4ba8d14a2dba: Preparing build 12-Jul-2018 14:14:36 aef0cd477448: Preparing build 12-Jul-2018 14:14:36 0cdb02ac1d86: Preparing build 12-Jul-2018 14:14:36 f2297bdfc824: Preparing build 12-Jul-2018 14:14:36 0fbe2bcb1bf9: Preparing build 12-Jul-2018 14:14:36 59669fcdd5eb: Preparing build 12-Jul-2018 14:14:36 7f7a065d245a: Preparing build 12-Jul-2018 14:14:36 f96e6b25195f: Preparing build 12-Jul-2018 14:14:36 c56153825175: Preparing build 12-Jul-2018 14:14:36 ae620432889d: Preparing build 12-Jul-2018 14:14:36 a2022691bf95: Preparing build 12-Jul-2018 14:14:36 f2297bdfc824: Waiting build 12-Jul-2018 14:14:36 0fbe2bcb1bf9: Waiting build 12-Jul-2018 14:14:36 59669fcdd5eb: Waiting build 12-Jul-2018 14:14:36 7f7a065d245a: Waiting build 12-Jul-2018 14:14:36 f96e6b25195f: Waiting build 12-Jul-2018 14:14:36 c56153825175: Waiting build 12-Jul-2018 14:14:36 ae620432889d: Waiting build 12-Jul-2018 14:14:37 0cdb02ac1d86: Layer already exists build 12-Jul-2018 14:14:37 f2297bdfc824: Layer already exists build 12-Jul-2018 14:14:37 0fbe2bcb1bf9: Layer already exists build 12-Jul-2018 14:14:37 59669fcdd5eb: Layer already exists build 12-Jul-2018 14:14:37 7f7a065d245a: Layer already exists build 12-Jul-2018 14:14:37 aef0cd477448: Pushed build 12-Jul-2018 14:14:37 f96e6b25195f: Layer already exists build 12-Jul-2018 14:14:38 c56153825175: Layer already exists build 12-Jul-2018 14:14:38 ae620432889d: Layer already exists build 12-Jul-2018 14:14:38 a2022691bf95: Layer already exists build 12-Jul-2018 14:14:38 a0db69d5072d: Pushed build 12-Jul-2018 14:14:38 0892292c24bf: Pushed build 12-Jul-2018 14:14:39 4ba8d14a2dba: Pushed build 12-Jul-2018 14:14:41 browndog_v0.2.0: digest: sha256:69342f3fbd6a6c066926566266b085fa21ad40270dcb31605d2c2ba4a8e2d0ac size: 3031 build 12-Jul-2018 14:14:41 The push refers to repository [docker.io/clowder/extractors-msc-chemcbc] build 12-Jul-2018 14:14:42 a0db69d5072d: Preparing build 12-Jul-2018 14:14:42 0892292c24bf: Preparing build 12-Jul-2018 14:14:42 4ba8d14a2dba: Preparing build 12-Jul-2018 14:14:42 aef0cd477448: Preparing build 12-Jul-2018 14:14:42 0cdb02ac1d86: Preparing build 12-Jul-2018 14:14:42 f2297bdfc824: Preparing build 12-Jul-2018 14:14:42 0fbe2bcb1bf9: Preparing build 12-Jul-2018 14:14:42 59669fcdd5eb: Preparing build 12-Jul-2018 14:14:42 7f7a065d245a: Preparing build 12-Jul-2018 14:14:42 f96e6b25195f: Preparing build 12-Jul-2018 14:14:42 0fbe2bcb1bf9: Waiting build 12-Jul-2018 14:14:42 f2297bdfc824: Waiting build 12-Jul-2018 14:14:42 59669fcdd5eb: Waiting build 12-Jul-2018 14:14:42 7f7a065d245a: Waiting build 12-Jul-2018 14:14:42 c56153825175: Preparing build 12-Jul-2018 14:14:42 ae620432889d: Preparing build 12-Jul-2018 14:14:42 a2022691bf95: Preparing build 12-Jul-2018 14:14:42 f96e6b25195f: Waiting build 12-Jul-2018 14:14:42 ae620432889d: Waiting build 12-Jul-2018 14:14:42 c56153825175: Waiting build 12-Jul-2018 14:14:42 a2022691bf95: Waiting build 12-Jul-2018 14:14:42 4ba8d14a2dba: Layer already exists build 12-Jul-2018 14:14:42 aef0cd477448: Layer already exists build 12-Jul-2018 14:14:42 a0db69d5072d: Layer already exists build 12-Jul-2018 14:14:42 0cdb02ac1d86: Layer already exists build 12-Jul-2018 14:14:42 0892292c24bf: Layer already exists build 12-Jul-2018 14:14:42 f2297bdfc824: Layer already exists build 12-Jul-2018 14:14:42 7f7a065d245a: Layer already exists build 12-Jul-2018 14:14:42 59669fcdd5eb: Layer already exists build 12-Jul-2018 14:14:42 0fbe2bcb1bf9: Layer already exists build 12-Jul-2018 14:14:42 f96e6b25195f: Layer already exists build 12-Jul-2018 14:14:42 c56153825175: Layer already exists build 12-Jul-2018 14:14:42 ae620432889d: Layer already exists build 12-Jul-2018 14:14:42 a2022691bf95: Layer already exists build 12-Jul-2018 14:14:43 browndog_v0.3.0: digest: sha256:69342f3fbd6a6c066926566266b085fa21ad40270dcb31605d2c2ba4a8e2d0ac size: 3031 build 12-Jul-2018 14:14:43 The push refers to repository [docker.io/clowder/extractors-msc-chemcbc] build 12-Jul-2018 14:14:43 a0db69d5072d: Preparing build 12-Jul-2018 14:14:43 0892292c24bf: Preparing build 12-Jul-2018 14:14:43 4ba8d14a2dba: Preparing build 12-Jul-2018 14:14:43 aef0cd477448: Preparing build 12-Jul-2018 14:14:43 0cdb02ac1d86: Preparing build 12-Jul-2018 14:14:43 f2297bdfc824: Preparing build 12-Jul-2018 14:14:43 0fbe2bcb1bf9: Preparing build 12-Jul-2018 14:14:43 59669fcdd5eb: Preparing build 12-Jul-2018 14:14:43 7f7a065d245a: Preparing build 12-Jul-2018 14:14:43 f96e6b25195f: Preparing build 12-Jul-2018 14:14:43 c56153825175: Preparing build 12-Jul-2018 14:14:43 ae620432889d: Preparing build 12-Jul-2018 14:14:43 a2022691bf95: Preparing build 12-Jul-2018 14:14:43 f2297bdfc824: Waiting build 12-Jul-2018 14:14:43 0fbe2bcb1bf9: Waiting build 12-Jul-2018 14:14:43 59669fcdd5eb: Waiting build 12-Jul-2018 14:14:43 7f7a065d245a: Waiting build 12-Jul-2018 14:14:43 f96e6b25195f: Waiting build 12-Jul-2018 14:14:43 c56153825175: Waiting build 12-Jul-2018 14:14:43 ae620432889d: Waiting build 12-Jul-2018 14:14:43 a2022691bf95: Waiting build 12-Jul-2018 14:14:43 0892292c24bf: Layer already exists build 12-Jul-2018 14:14:43 aef0cd477448: Layer already exists build 12-Jul-2018 14:14:43 4ba8d14a2dba: Layer already exists build 12-Jul-2018 14:14:43 0cdb02ac1d86: Layer already exists build 12-Jul-2018 14:14:43 a0db69d5072d: Layer already exists build 12-Jul-2018 14:14:44 0fbe2bcb1bf9: Layer already exists build 12-Jul-2018 14:14:44 59669fcdd5eb: Layer already exists build 12-Jul-2018 14:14:44 7f7a065d245a: Layer already exists build 12-Jul-2018 14:14:44 f2297bdfc824: Layer already exists build 12-Jul-2018 14:14:44 f96e6b25195f: Layer already exists build 12-Jul-2018 14:14:44 c56153825175: Layer already exists build 12-Jul-2018 14:14:44 a2022691bf95: Layer already exists build 12-Jul-2018 14:14:44 ae620432889d: Layer already exists build 12-Jul-2018 14:14:44 latest: digest: sha256:69342f3fbd6a6c066926566266b085fa21ad40270dcb31605d2c2ba4a8e2d0ac size: 3031 build 12-Jul-2018 14:14:44 Untagged: 6184:latest build 12-Jul-2018 14:14:44 Sending build context to Docker daemon 198.1kB build 12-Jul-2018 14:14:44 build 12-Jul-2018 14:14:44 Step 1/11 : FROM clowder/pyclowder:1 build 12-Jul-2018 14:14:44 ---> d1a9e970ed30 build 12-Jul-2018 14:14:44 Step 2/11 : MAINTAINER Yan Zhao build 12-Jul-2018 14:14:44 ---> Using cache build 12-Jul-2018 14:14:44 ---> 1b1daf5ef823 build 12-Jul-2018 14:14:44 Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.MonitorExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Monitor.py" build 12-Jul-2018 14:14:45 ---> Running in 5d61d18368e5 build 12-Jul-2018 14:14:45 Removing intermediate container 5d61d18368e5 build 12-Jul-2018 14:14:45 ---> 0493d953fac7 build 12-Jul-2018 14:14:45 Step 4/11 : USER root build 12-Jul-2018 14:14:45 ---> Running in 0266a705fe8a build 12-Jul-2018 14:14:45 Removing intermediate container 0266a705fe8a build 12-Jul-2018 14:14:45 ---> 569648ccc2f2 build 12-Jul-2018 14:14:45 Step 5/11 : COPY requirements.txt /home/clowder/ build 12-Jul-2018 14:14:46 ---> 6f39f63a0774 build 12-Jul-2018 14:14:46 Step 6/11 : RUN pip install --upgrade pip build 12-Jul-2018 14:14:46 ---> Running in 17bb03d48e27 build 12-Jul-2018 14:14:47 Collecting pip build 12-Jul-2018 14:14:47 Downloading https://files.pythonhosted.org/packages/0f/74/ecd13431bcc456ed390b44c8a6e917c1820365cbebcb6a8974d1cd045ab4/pip-10.0.1-py2.py3-none-any.whl (1.3MB) build 12-Jul-2018 14:14:47 Installing collected packages: pip build 12-Jul-2018 14:14:47 Found existing installation: pip 8.1.1 build 12-Jul-2018 14:14:47 Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr build 12-Jul-2018 14:14:48 Successfully installed pip-10.0.1 build 12-Jul-2018 14:14:49 Removing intermediate container 17bb03d48e27 build 12-Jul-2018 14:14:49 ---> 4276a247af28 build 12-Jul-2018 14:14:49 Step 7/11 : RUN pip install -r /home/clowder/requirements.txt build 12-Jul-2018 14:14:50 ---> Running in de0c0175851b build 12-Jul-2018 14:14:50 Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) build 12-Jul-2018 14:14:50 Collecting openpyxl==1.6.2 (from -r /home/clowder/requirements.txt (line 2)) build 12-Jul-2018 14:14:50 Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) build 12-Jul-2018 14:14:51 Collecting pika==0.9.14 (from -r /home/clowder/requirements.txt (line 3)) build 12-Jul-2018 14:14:51 Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) build 12-Jul-2018 14:14:51 Collecting pymongo==3.2.1 (from -r /home/clowder/requirements.txt (line 4)) build 12-Jul-2018 14:14:52 Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) build 12-Jul-2018 14:14:52 Collecting pytz==2014.3 (from -r /home/clowder/requirements.txt (line 5)) build 12-Jul-2018 14:14:52 Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) build 12-Jul-2018 14:14:53 Collecting requests==2.2.1 (from -r /home/clowder/requirements.txt (line 6)) build 12-Jul-2018 14:14:53 Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) build 12-Jul-2018 14:14:53 Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) build 12-Jul-2018 14:14:53 Collecting xlrd==0.9.3 (from -r /home/clowder/requirements.txt (line 8)) build 12-Jul-2018 14:14:53 Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) build 12-Jul-2018 14:14:53 Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd build 12-Jul-2018 14:14:53 Running setup.py install for openpyxl: started build 12-Jul-2018 14:14:53 Running setup.py install for openpyxl: finished with status 'done' build 12-Jul-2018 14:14:53 Found existing installation: pika 0.11.0 build 12-Jul-2018 14:14:53 Uninstalling pika-0.11.0: build 12-Jul-2018 14:14:54 Successfully uninstalled pika-0.11.0 build 12-Jul-2018 14:14:54 Running setup.py install for pika: started build 12-Jul-2018 14:14:55 Running setup.py install for pika: finished with status 'done' build 12-Jul-2018 14:14:55 Running setup.py install for pymongo: started build 12-Jul-2018 14:14:55 Running setup.py install for pymongo: finished with status 'done' build 12-Jul-2018 14:14:55 Running setup.py install for pytz: started build 12-Jul-2018 14:14:56 Running setup.py install for pytz: finished with status 'done' build 12-Jul-2018 14:14:56 Found existing installation: requests 2.18.4 build 12-Jul-2018 14:14:56 Uninstalling requests-2.18.4: build 12-Jul-2018 14:14:57 Successfully uninstalled requests-2.18.4 build 12-Jul-2018 14:14:58 Running setup.py install for xlrd: started build 12-Jul-2018 14:14:58 Running setup.py install for xlrd: finished with status 'done' build 12-Jul-2018 14:14:58 Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 build 12-Jul-2018 14:14:59 Removing intermediate container de0c0175851b build 12-Jul-2018 14:14:59 ---> 405413e755ed build 12-Jul-2018 14:14:59 Step 8/11 : USER clowder build 12-Jul-2018 14:15:00 ---> Running in 3d8193d8b89a build 12-Jul-2018 14:15:00 Removing intermediate container 3d8193d8b89a build 12-Jul-2018 14:15:00 ---> e53ddd82a952 build 12-Jul-2018 14:15:00 Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ build 12-Jul-2018 14:15:01 ---> 72b8b1f89e60 build 12-Jul-2018 14:15:01 Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 12-Jul-2018 14:15:02 ---> Running in 19fddae1f2ac build 12-Jul-2018 14:15:03 Removing intermediate container 19fddae1f2ac build 12-Jul-2018 14:15:03 ---> fe119c3684a8 build 12-Jul-2018 14:15:03 Step 11/11 : CMD ["extractor"] build 12-Jul-2018 14:15:03 ---> Running in 6ec5bee289d7 build 12-Jul-2018 14:15:03 Removing intermediate container 6ec5bee289d7 build 12-Jul-2018 14:15:03 ---> 8fadfbf81071 build 12-Jul-2018 14:15:03 Successfully built 8fadfbf81071 build 12-Jul-2018 14:15:04 Successfully tagged 6184:latest build 12-Jul-2018 14:15:04 The push refers to repository [docker.io/clowder/extractors-msc-monitor] build 12-Jul-2018 14:15:04 dc989afa6c96: Preparing build 12-Jul-2018 14:15:04 8759b325e544: Preparing build 12-Jul-2018 14:15:04 46ac2faea553: Preparing build 12-Jul-2018 14:15:04 4664189bd5db: Preparing build 12-Jul-2018 14:15:04 0cdb02ac1d86: Preparing build 12-Jul-2018 14:15:04 f2297bdfc824: Preparing build 12-Jul-2018 14:15:04 0fbe2bcb1bf9: Preparing build 12-Jul-2018 14:15:04 59669fcdd5eb: Preparing build 12-Jul-2018 14:15:04 7f7a065d245a: Preparing build 12-Jul-2018 14:15:04 f96e6b25195f: Preparing build 12-Jul-2018 14:15:04 c56153825175: Preparing build 12-Jul-2018 14:15:04 ae620432889d: Preparing build 12-Jul-2018 14:15:04 a2022691bf95: Preparing build 12-Jul-2018 14:15:04 f2297bdfc824: Waiting build 12-Jul-2018 14:15:04 0fbe2bcb1bf9: Waiting build 12-Jul-2018 14:15:04 59669fcdd5eb: Waiting build 12-Jul-2018 14:15:04 7f7a065d245a: Waiting build 12-Jul-2018 14:15:04 f96e6b25195f: Waiting build 12-Jul-2018 14:15:04 c56153825175: Waiting build 12-Jul-2018 14:15:04 ae620432889d: Waiting build 12-Jul-2018 14:15:04 a2022691bf95: Waiting build 12-Jul-2018 14:15:04 0cdb02ac1d86: Layer already exists build 12-Jul-2018 14:15:05 f2297bdfc824: Layer already exists build 12-Jul-2018 14:15:05 0fbe2bcb1bf9: Layer already exists build 12-Jul-2018 14:15:05 59669fcdd5eb: Layer already exists build 12-Jul-2018 14:15:05 7f7a065d245a: Layer already exists build 12-Jul-2018 14:15:05 f96e6b25195f: Layer already exists build 12-Jul-2018 14:15:05 dc989afa6c96: Pushed build 12-Jul-2018 14:15:06 c56153825175: Layer already exists build 12-Jul-2018 14:15:06 ae620432889d: Layer already exists build 12-Jul-2018 14:15:06 a2022691bf95: Layer already exists build 12-Jul-2018 14:15:06 46ac2faea553: Pushed build 12-Jul-2018 14:15:06 4664189bd5db: Pushed build 12-Jul-2018 14:15:07 8759b325e544: Pushed build 12-Jul-2018 14:15:08 browndog_v0.2.0: digest: sha256:0c8e0c3ae356f29d0c5e14c379e5a484f753a97f0053d38591a28ec0b47d3801 size: 3031 build 12-Jul-2018 14:15:09 The push refers to repository [docker.io/clowder/extractors-msc-monitor] build 12-Jul-2018 14:15:09 dc989afa6c96: Preparing build 12-Jul-2018 14:15:09 8759b325e544: Preparing build 12-Jul-2018 14:15:09 46ac2faea553: Preparing build 12-Jul-2018 14:15:09 4664189bd5db: Preparing build 12-Jul-2018 14:15:09 0cdb02ac1d86: Preparing build 12-Jul-2018 14:15:09 f2297bdfc824: Preparing build 12-Jul-2018 14:15:09 0fbe2bcb1bf9: Preparing build 12-Jul-2018 14:15:09 59669fcdd5eb: Preparing build 12-Jul-2018 14:15:09 7f7a065d245a: Preparing build 12-Jul-2018 14:15:09 f96e6b25195f: Preparing build 12-Jul-2018 14:15:09 c56153825175: Preparing build 12-Jul-2018 14:15:09 ae620432889d: Preparing build 12-Jul-2018 14:15:09 a2022691bf95: Preparing build 12-Jul-2018 14:15:09 59669fcdd5eb: Waiting build 12-Jul-2018 14:15:09 7f7a065d245a: Waiting build 12-Jul-2018 14:15:09 f96e6b25195f: Waiting build 12-Jul-2018 14:15:09 a2022691bf95: Waiting build 12-Jul-2018 14:15:09 c56153825175: Waiting build 12-Jul-2018 14:15:09 ae620432889d: Waiting build 12-Jul-2018 14:15:09 f2297bdfc824: Waiting build 12-Jul-2018 14:15:09 0fbe2bcb1bf9: Waiting build 12-Jul-2018 14:15:09 46ac2faea553: Layer already exists build 12-Jul-2018 14:15:09 4664189bd5db: Layer already exists build 12-Jul-2018 14:15:09 8759b325e544: Layer already exists build 12-Jul-2018 14:15:09 dc989afa6c96: Layer already exists build 12-Jul-2018 14:15:09 0cdb02ac1d86: Layer already exists build 12-Jul-2018 14:15:09 f2297bdfc824: Layer already exists build 12-Jul-2018 14:15:10 59669fcdd5eb: Layer already exists build 12-Jul-2018 14:15:10 0fbe2bcb1bf9: Layer already exists build 12-Jul-2018 14:15:10 7f7a065d245a: Layer already exists build 12-Jul-2018 14:15:10 f96e6b25195f: Layer already exists build 12-Jul-2018 14:15:10 ae620432889d: Layer already exists build 12-Jul-2018 14:15:10 c56153825175: Layer already exists build 12-Jul-2018 14:15:10 a2022691bf95: Layer already exists build 12-Jul-2018 14:15:10 browndog_v0.3.0: digest: sha256:0c8e0c3ae356f29d0c5e14c379e5a484f753a97f0053d38591a28ec0b47d3801 size: 3031 build 12-Jul-2018 14:15:10 The push refers to repository [docker.io/clowder/extractors-msc-monitor] build 12-Jul-2018 14:15:10 dc989afa6c96: Preparing build 12-Jul-2018 14:15:10 8759b325e544: Preparing build 12-Jul-2018 14:15:10 46ac2faea553: Preparing build 12-Jul-2018 14:15:10 4664189bd5db: Preparing build 12-Jul-2018 14:15:10 0cdb02ac1d86: Preparing build 12-Jul-2018 14:15:10 f2297bdfc824: Preparing build 12-Jul-2018 14:15:10 0fbe2bcb1bf9: Preparing build 12-Jul-2018 14:15:10 59669fcdd5eb: Preparing build 12-Jul-2018 14:15:10 7f7a065d245a: Preparing build 12-Jul-2018 14:15:10 f96e6b25195f: Preparing build 12-Jul-2018 14:15:10 c56153825175: Preparing build 12-Jul-2018 14:15:10 ae620432889d: Preparing build 12-Jul-2018 14:15:10 a2022691bf95: Preparing build 12-Jul-2018 14:15:10 f2297bdfc824: Waiting build 12-Jul-2018 14:15:10 0fbe2bcb1bf9: Waiting build 12-Jul-2018 14:15:10 59669fcdd5eb: Waiting build 12-Jul-2018 14:15:10 7f7a065d245a: Waiting build 12-Jul-2018 14:15:10 f96e6b25195f: Waiting build 12-Jul-2018 14:15:10 c56153825175: Waiting build 12-Jul-2018 14:15:10 ae620432889d: Waiting build 12-Jul-2018 14:15:10 a2022691bf95: Waiting build 12-Jul-2018 14:15:11 0cdb02ac1d86: Layer already exists build 12-Jul-2018 14:15:11 8759b325e544: Layer already exists build 12-Jul-2018 14:15:11 dc989afa6c96: Layer already exists build 12-Jul-2018 14:15:11 46ac2faea553: Layer already exists build 12-Jul-2018 14:15:11 4664189bd5db: Layer already exists build 12-Jul-2018 14:15:11 f2297bdfc824: Layer already exists build 12-Jul-2018 14:15:11 59669fcdd5eb: Layer already exists build 12-Jul-2018 14:15:11 0fbe2bcb1bf9: Layer already exists build 12-Jul-2018 14:15:11 7f7a065d245a: Layer already exists build 12-Jul-2018 14:15:11 f96e6b25195f: Layer already exists build 12-Jul-2018 14:15:11 c56153825175: Layer already exists build 12-Jul-2018 14:15:11 ae620432889d: Layer already exists build 12-Jul-2018 14:15:11 a2022691bf95: Layer already exists build 12-Jul-2018 14:15:11 latest: digest: sha256:0c8e0c3ae356f29d0c5e14c379e5a484f753a97f0053d38591a28ec0b47d3801 size: 3031 build 12-Jul-2018 14:15:12 Untagged: 6184:latest build 12-Jul-2018 14:15:12 Sending build context to Docker daemon 12.1MB build 12-Jul-2018 14:15:12 build 12-Jul-2018 14:15:12 Step 1/11 : FROM clowder/pyclowder:1 build 12-Jul-2018 14:15:12 ---> d1a9e970ed30 build 12-Jul-2018 14:15:12 Step 2/11 : MAINTAINER Yan Zhao build 12-Jul-2018 14:15:12 ---> Using cache build 12-Jul-2018 14:15:12 ---> 1b1daf5ef823 build 12-Jul-2018 14:15:12 Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.PhenotypeExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Phenotype.py" build 12-Jul-2018 14:15:12 ---> Running in 67498b8594bf build 12-Jul-2018 14:15:12 Removing intermediate container 67498b8594bf build 12-Jul-2018 14:15:12 ---> 596229e8ce31 build 12-Jul-2018 14:15:12 Step 4/11 : USER root build 12-Jul-2018 14:15:12 ---> Running in 59507408e486 build 12-Jul-2018 14:15:13 Removing intermediate container 59507408e486 build 12-Jul-2018 14:15:13 ---> 6e3d4fa1824a build 12-Jul-2018 14:15:13 Step 5/11 : COPY requirements.txt /home/clowder/ build 12-Jul-2018 14:15:13 ---> 9fbb399afeba build 12-Jul-2018 14:15:13 Step 6/11 : RUN pip install --upgrade pip build 12-Jul-2018 14:15:14 ---> Running in 8c86e4a92adc build 12-Jul-2018 14:15:15 Collecting pip build 12-Jul-2018 14:15:15 Downloading https://files.pythonhosted.org/packages/0f/74/ecd13431bcc456ed390b44c8a6e917c1820365cbebcb6a8974d1cd045ab4/pip-10.0.1-py2.py3-none-any.whl (1.3MB) build 12-Jul-2018 14:15:15 Installing collected packages: pip build 12-Jul-2018 14:15:15 Found existing installation: pip 8.1.1 build 12-Jul-2018 14:15:15 Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr build 12-Jul-2018 14:15:16 Successfully installed pip-10.0.1 build 12-Jul-2018 14:15:17 Removing intermediate container 8c86e4a92adc build 12-Jul-2018 14:15:17 ---> d6094bc42ca9 build 12-Jul-2018 14:15:17 Step 7/11 : RUN pip install -r /home/clowder/requirements.txt build 12-Jul-2018 14:15:18 ---> Running in 9f4774db4789 build 12-Jul-2018 14:15:18 Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) build 12-Jul-2018 14:15:18 Collecting openpyxl==1.6.2 (from -r /home/clowder/requirements.txt (line 2)) build 12-Jul-2018 14:15:19 Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) build 12-Jul-2018 14:15:19 Collecting pika==0.9.14 (from -r /home/clowder/requirements.txt (line 3)) build 12-Jul-2018 14:15:19 Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) build 12-Jul-2018 14:15:19 Collecting pymongo==3.2.1 (from -r /home/clowder/requirements.txt (line 4)) build 12-Jul-2018 14:15:20 Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) build 12-Jul-2018 14:15:20 Collecting pytz==2014.3 (from -r /home/clowder/requirements.txt (line 5)) build 12-Jul-2018 14:15:20 Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) build 12-Jul-2018 14:15:21 Collecting requests==2.2.1 (from -r /home/clowder/requirements.txt (line 6)) build 12-Jul-2018 14:15:21 Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) build 12-Jul-2018 14:15:21 Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) build 12-Jul-2018 14:15:21 Collecting xlrd==0.9.3 (from -r /home/clowder/requirements.txt (line 8)) build 12-Jul-2018 14:15:21 Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) build 12-Jul-2018 14:15:21 Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd build 12-Jul-2018 14:15:21 Running setup.py install for openpyxl: started build 12-Jul-2018 14:15:22 Running setup.py install for openpyxl: finished with status 'done' build 12-Jul-2018 14:15:22 Found existing installation: pika 0.11.0 build 12-Jul-2018 14:15:22 Uninstalling pika-0.11.0: build 12-Jul-2018 14:15:23 Successfully uninstalled pika-0.11.0 build 12-Jul-2018 14:15:23 Running setup.py install for pika: started build 12-Jul-2018 14:15:23 Running setup.py install for pika: finished with status 'done' build 12-Jul-2018 14:15:23 Running setup.py install for pymongo: started build 12-Jul-2018 14:15:24 Running setup.py install for pymongo: finished with status 'done' build 12-Jul-2018 14:15:24 Running setup.py install for pytz: started build 12-Jul-2018 14:15:24 Running setup.py install for pytz: finished with status 'done' build 12-Jul-2018 14:15:24 Found existing installation: requests 2.18.4 build 12-Jul-2018 14:15:24 Uninstalling requests-2.18.4: build 12-Jul-2018 14:15:25 Successfully uninstalled requests-2.18.4 build 12-Jul-2018 14:15:26 Running setup.py install for xlrd: started build 12-Jul-2018 14:15:26 Running setup.py install for xlrd: finished with status 'done' build 12-Jul-2018 14:15:26 Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 build 12-Jul-2018 14:15:27 Removing intermediate container 9f4774db4789 build 12-Jul-2018 14:15:27 ---> d72b3ce14cec build 12-Jul-2018 14:15:27 Step 8/11 : USER clowder build 12-Jul-2018 14:15:27 ---> Running in 62b2adb3c193 build 12-Jul-2018 14:15:28 Removing intermediate container 62b2adb3c193 build 12-Jul-2018 14:15:28 ---> c8b810798f6c build 12-Jul-2018 14:15:28 Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ build 12-Jul-2018 14:15:29 ---> b56bde19362f build 12-Jul-2018 14:15:29 Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 12-Jul-2018 14:15:29 ---> Running in 0d961c176e7a build 12-Jul-2018 14:15:29 Removing intermediate container 0d961c176e7a build 12-Jul-2018 14:15:29 ---> 404e714daee0 build 12-Jul-2018 14:15:29 Step 11/11 : CMD ["extractor"] build 12-Jul-2018 14:15:29 ---> Running in 128c88f40d0c build 12-Jul-2018 14:15:30 Removing intermediate container 128c88f40d0c build 12-Jul-2018 14:15:30 ---> d55963b2f3a0 build 12-Jul-2018 14:15:30 Successfully built d55963b2f3a0 build 12-Jul-2018 14:15:30 Successfully tagged 6184:latest build 12-Jul-2018 14:15:30 The push refers to repository [docker.io/clowder/extractors-msc-phenotype] build 12-Jul-2018 14:15:30 36f7674bd726: Preparing build 12-Jul-2018 14:15:30 cb673411fe62: Preparing build 12-Jul-2018 14:15:30 34bfb2693129: Preparing build 12-Jul-2018 14:15:30 414d65f7ecb8: Preparing build 12-Jul-2018 14:15:30 0cdb02ac1d86: Preparing build 12-Jul-2018 14:15:30 f2297bdfc824: Preparing build 12-Jul-2018 14:15:30 0fbe2bcb1bf9: Preparing build 12-Jul-2018 14:15:30 59669fcdd5eb: Preparing build 12-Jul-2018 14:15:30 7f7a065d245a: Preparing build 12-Jul-2018 14:15:30 f96e6b25195f: Preparing build 12-Jul-2018 14:15:30 c56153825175: Preparing build 12-Jul-2018 14:15:30 ae620432889d: Preparing build 12-Jul-2018 14:15:30 a2022691bf95: Preparing build 12-Jul-2018 14:15:30 f2297bdfc824: Waiting build 12-Jul-2018 14:15:30 0fbe2bcb1bf9: Waiting build 12-Jul-2018 14:15:30 59669fcdd5eb: Waiting build 12-Jul-2018 14:15:30 7f7a065d245a: Waiting build 12-Jul-2018 14:15:30 f96e6b25195f: Waiting build 12-Jul-2018 14:15:30 c56153825175: Waiting build 12-Jul-2018 14:15:30 ae620432889d: Waiting build 12-Jul-2018 14:15:30 a2022691bf95: Waiting build 12-Jul-2018 14:15:36 0cdb02ac1d86: Layer already exists build 12-Jul-2018 14:15:36 f2297bdfc824: Layer already exists build 12-Jul-2018 14:15:36 0fbe2bcb1bf9: Layer already exists build 12-Jul-2018 14:15:36 59669fcdd5eb: Layer already exists build 12-Jul-2018 14:15:36 7f7a065d245a: Layer already exists build 12-Jul-2018 14:15:37 f96e6b25195f: Layer already exists build 12-Jul-2018 14:15:37 36f7674bd726: Pushed build 12-Jul-2018 14:15:37 c56153825175: Layer already exists build 12-Jul-2018 14:15:37 a2022691bf95: Layer already exists build 12-Jul-2018 14:15:37 ae620432889d: Layer already exists build 12-Jul-2018 14:15:37 414d65f7ecb8: Pushed build 12-Jul-2018 14:15:38 34bfb2693129: Pushed build 12-Jul-2018 14:15:39 cb673411fe62: Pushed build 12-Jul-2018 14:15:44 browndog_v0.2.0: digest: sha256:056447037fdd7f13a01a8d33dae60f6034f56c7f288dab53fb211e7bef379510 size: 3031 build 12-Jul-2018 14:15:44 The push refers to repository [docker.io/clowder/extractors-msc-phenotype] build 12-Jul-2018 14:15:44 36f7674bd726: Preparing build 12-Jul-2018 14:15:44 cb673411fe62: Preparing build 12-Jul-2018 14:15:44 34bfb2693129: Preparing build 12-Jul-2018 14:15:44 414d65f7ecb8: Preparing build 12-Jul-2018 14:15:44 0cdb02ac1d86: Preparing build 12-Jul-2018 14:15:44 f2297bdfc824: Preparing build 12-Jul-2018 14:15:44 0fbe2bcb1bf9: Preparing build 12-Jul-2018 14:15:44 59669fcdd5eb: Preparing build 12-Jul-2018 14:15:44 7f7a065d245a: Preparing build 12-Jul-2018 14:15:44 f96e6b25195f: Preparing build 12-Jul-2018 14:15:44 c56153825175: Preparing build 12-Jul-2018 14:15:44 ae620432889d: Preparing build 12-Jul-2018 14:15:44 a2022691bf95: Preparing build 12-Jul-2018 14:15:44 7f7a065d245a: Waiting build 12-Jul-2018 14:15:44 f96e6b25195f: Waiting build 12-Jul-2018 14:15:44 c56153825175: Waiting build 12-Jul-2018 14:15:44 ae620432889d: Waiting build 12-Jul-2018 14:15:44 a2022691bf95: Waiting build 12-Jul-2018 14:15:44 f2297bdfc824: Waiting build 12-Jul-2018 14:15:44 0fbe2bcb1bf9: Waiting build 12-Jul-2018 14:15:44 59669fcdd5eb: Waiting build 12-Jul-2018 14:15:45 0cdb02ac1d86: Layer already exists build 12-Jul-2018 14:15:45 cb673411fe62: Layer already exists build 12-Jul-2018 14:15:45 34bfb2693129: Layer already exists build 12-Jul-2018 14:15:45 414d65f7ecb8: Layer already exists build 12-Jul-2018 14:15:45 36f7674bd726: Layer already exists build 12-Jul-2018 14:15:45 7f7a065d245a: Layer already exists build 12-Jul-2018 14:15:45 f2297bdfc824: Layer already exists build 12-Jul-2018 14:15:45 0fbe2bcb1bf9: Layer already exists build 12-Jul-2018 14:15:45 59669fcdd5eb: Layer already exists build 12-Jul-2018 14:15:45 f96e6b25195f: Layer already exists build 12-Jul-2018 14:15:45 c56153825175: Layer already exists build 12-Jul-2018 14:15:45 ae620432889d: Layer already exists build 12-Jul-2018 14:15:45 a2022691bf95: Layer already exists build 12-Jul-2018 14:15:46 browndog_v0.3.0: digest: sha256:056447037fdd7f13a01a8d33dae60f6034f56c7f288dab53fb211e7bef379510 size: 3031 build 12-Jul-2018 14:15:47 The push refers to repository [docker.io/clowder/extractors-msc-phenotype] build 12-Jul-2018 14:15:47 36f7674bd726: Preparing build 12-Jul-2018 14:15:47 cb673411fe62: Preparing build 12-Jul-2018 14:15:47 34bfb2693129: Preparing build 12-Jul-2018 14:15:47 414d65f7ecb8: Preparing build 12-Jul-2018 14:15:47 0cdb02ac1d86: Preparing build 12-Jul-2018 14:15:47 f2297bdfc824: Preparing build 12-Jul-2018 14:15:47 0fbe2bcb1bf9: Preparing build 12-Jul-2018 14:15:47 59669fcdd5eb: Preparing build 12-Jul-2018 14:15:47 7f7a065d245a: Preparing build 12-Jul-2018 14:15:47 f96e6b25195f: Preparing build 12-Jul-2018 14:15:47 c56153825175: Preparing build 12-Jul-2018 14:15:47 ae620432889d: Preparing build 12-Jul-2018 14:15:47 a2022691bf95: Preparing build 12-Jul-2018 14:15:47 f2297bdfc824: Waiting build 12-Jul-2018 14:15:47 7f7a065d245a: Waiting build 12-Jul-2018 14:15:47 f96e6b25195f: Waiting build 12-Jul-2018 14:15:47 0fbe2bcb1bf9: Waiting build 12-Jul-2018 14:15:47 59669fcdd5eb: Waiting build 12-Jul-2018 14:15:47 c56153825175: Waiting build 12-Jul-2018 14:15:47 ae620432889d: Waiting build 12-Jul-2018 14:15:47 a2022691bf95: Waiting build 12-Jul-2018 14:15:47 414d65f7ecb8: Layer already exists build 12-Jul-2018 14:15:47 34bfb2693129: Layer already exists build 12-Jul-2018 14:15:47 cb673411fe62: Layer already exists build 12-Jul-2018 14:15:47 0cdb02ac1d86: Layer already exists build 12-Jul-2018 14:15:47 36f7674bd726: Layer already exists build 12-Jul-2018 14:15:47 f2297bdfc824: Layer already exists build 12-Jul-2018 14:15:47 0fbe2bcb1bf9: Layer already exists build 12-Jul-2018 14:15:47 7f7a065d245a: Layer already exists build 12-Jul-2018 14:15:47 59669fcdd5eb: Layer already exists build 12-Jul-2018 14:15:47 f96e6b25195f: Layer already exists build 12-Jul-2018 14:15:47 c56153825175: Layer already exists build 12-Jul-2018 14:15:47 a2022691bf95: Layer already exists build 12-Jul-2018 14:15:47 ae620432889d: Layer already exists build 12-Jul-2018 14:15:48 latest: digest: sha256:056447037fdd7f13a01a8d33dae60f6034f56c7f288dab53fb211e7bef379510 size: 3031 build 12-Jul-2018 14:15:48 Untagged: 6184:latest simple 12-Jul-2018 14:15:48 Finished task 'docker build' with result: Success simple 12-Jul-2018 14:15:48 Running post build plugin 'Docker Container Cleanup' simple 12-Jul-2018 14:15:48 Running post build plugin 'NCover Results Collector' simple 12-Jul-2018 14:15:48 Running post build plugin 'Clover Results Collector' simple 12-Jul-2018 14:15:48 Running post build plugin 'npm Cache Cleanup' simple 12-Jul-2018 14:15:48 Running post build plugin 'Artifact Copier' simple 12-Jul-2018 14:15:48 Finalising the build... simple 12-Jul-2018 14:15:48 Stopping timer. simple 12-Jul-2018 14:15:48 Build CATS-MSC-JOB1-38 completed. simple 12-Jul-2018 14:15:48 Running on server: post build plugin 'NCover Results Collector' simple 12-Jul-2018 14:15:48 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 12-Jul-2018 14:15:48 Running on server: post build plugin 'Clover Delta Calculator' simple 12-Jul-2018 14:15:48 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 12-Jul-2018 14:15:48 All post build plugins have finished simple 12-Jul-2018 14:15:48 Generating build results summary... simple 12-Jul-2018 14:15:48 Saving build results to disk... simple 12-Jul-2018 14:15:48 Logging substituted variables... simple 12-Jul-2018 14:15:48 Indexing build results... simple 12-Jul-2018 14:15:48 Finished building CATS-MSC-JOB1-38.