simple 17-Aug-2019 20:19:04 Build Clowder - extractors-msc - Default Job #40 (CATS-MSC-JOB1-40) started building on agent buildserver-1.os.ncsa.edu simple 17-Aug-2019 20:19:04 Remote agent on host buildserver-1.os.ncsa.edu simple 17-Aug-2019 20:19:04 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1 simple 17-Aug-2019 20:19:04 Executing build Clowder - extractors-msc - Default Job #40 (CATS-MSC-JOB1-40) simple 17-Aug-2019 20:19:04 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 17-Aug-2019 20:19:04 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1 simple 17-Aug-2019 20:19:04 Updating source code to revision: 6aaab3692bc88bb1c0016521723c45399615c5f2 simple 17-Aug-2019 20:19:04 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1/.git'. simple 17-Aug-2019 20:19:04 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1/.git/ simple 17-Aug-2019 20:19:04 Fetching 'refs/heads/master' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git'. Will try to do a shallow fetch. simple 17-Aug-2019 20:19:04 Warning: Permanently added '[127.0.0.1]:45630' (RSA) to the list of known hosts. simple 17-Aug-2019 20:19:06 From ssh://127.0.0.1:45630/cats/extractors-msc simple 17-Aug-2019 20:19:06 * [new branch] master -> master simple 17-Aug-2019 20:19:06 * [new tag] browndog_v0.2.0 -> browndog_v0.2.0 simple 17-Aug-2019 20:19:06 * [new tag] browndog_v0.3.0 -> browndog_v0.3.0 simple 17-Aug-2019 20:19:06 Checking out revision 6aaab3692bc88bb1c0016521723c45399615c5f2. simple 17-Aug-2019 20:19:06 Already on 'master' simple 17-Aug-2019 20:19:06 Updated source code to revision: 6aaab3692bc88bb1c0016521723c45399615c5f2 simple 17-Aug-2019 20:19:06 Finished task 'Checkout Default Repository' with result: Success simple 17-Aug-2019 20:19:06 Running pre-build action: VCS Version Collector simple 17-Aug-2019 20:19:06 Starting task 'docker build' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 17-Aug-2019 20:19:06 Beginning to execute external process for build 'Clowder - extractors-msc - Default Job #40 (CATS-MSC-JOB1-40)'\n ... running command line: \n/bin/sh docker.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=master\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster\nbamboo_dependency_parent_0=CATS-PYC2-76\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_dependency_parent_total=1\nbamboo_planRepository_1_branchDisplayName=master\nbamboo_repository_revision_number=6aaab3692bc88bb1c0016521723c45399615c5f2\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-MSC-JOB1-40\nbamboo_repository_127172627_branch_name=master\nbamboo_repository_127172627_git_branch=master\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1\nbamboo_planRepository_1_name=extractors-msc\nbamboo_buildKey=CATS-MSC-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=extractors-msc\nbamboo_planRepository_name=extractors-msc\nbamboo_repository_127172627_git_username=\nbamboo_buildNumber=40\nbamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-MSC-JOB1-40\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git\nbamboo_agentId=140673027\nbamboo_planName=Clowder - extractors-msc\nbamboo_repository_127172627_revision_number=6aaab3692bc88bb1c0016521723c45399615c5f2\nbamboo_shortPlanKey=MSC\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_shortJobKey=JOB1\nbamboo_planRepository_revision=6aaab3692bc88bb1c0016521723c45399615c5f2\nbamboo_buildTimeStamp=2019-08-17T19:44:33.114-05:00\nbamboo_repository_previous_revision_number=6aaab3692bc88bb1c0016521723c45399615c5f2\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_planRepository_previousRevision=6aaab3692bc88bb1c0016521723c45399615c5f2\nbamboo_repository_git_branch=master\nbamboo_buildResultKey=CATS-MSC-JOB1-40\nbamboo_repository_branch_name=master\nbamboo_buildPlanName=Clowder - extractors-msc - Default Job\nbamboo_planRepository_1_revision=6aaab3692bc88bb1c0016521723c45399615c5f2\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=extractors-msc\nbamboo_buildFailed=false\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_branch=master\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=6aaab3692bc88bb1c0016521723c45399615c5f2\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_repository_127172627_name=extractors-msc\nbamboo_planRepository_branchDisplayName=master\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=master\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-126976035\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git\nbamboo_repository_127172627_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1\nbamboo_planKey=CATS-MSC\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_repository_127172627_previous_revision_number=6aaab3692bc88bb1c0016521723c45399615c5f2\nbamboo_planRepository_1_branchName=master\n build 17-Aug-2019 20:19:07 Sending build context to Docker daemon 2.284MB build 17-Aug-2019 20:19:07 build 17-Aug-2019 20:19:07 Step 1/11 : FROM clowder/pyclowder:1 build 17-Aug-2019 20:19:07 ---> d1a9e970ed30 build 17-Aug-2019 20:19:07 Step 2/11 : MAINTAINER Rob Kooper build 17-Aug-2019 20:19:07 ---> Running in 83081b5f1525 build 17-Aug-2019 20:19:08 Removing intermediate container 83081b5f1525 build 17-Aug-2019 20:19:08 ---> e2d481cca5a3 build 17-Aug-2019 20:19:08 Step 3/11 : VOLUME /matlab build 17-Aug-2019 20:19:08 ---> Running in ed446c7333e4 build 17-Aug-2019 20:19:09 Removing intermediate container ed446c7333e4 build 17-Aug-2019 20:19:09 ---> 6a2b2693e534 build 17-Aug-2019 20:19:09 Step 4/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.diagnosis" MATLAB_BINARY="/matlab/bin/matlab" MAIN_SCRIPT="diagnosis.py" build 17-Aug-2019 20:19:09 ---> Running in 2e32a2fa03d7 build 17-Aug-2019 20:19:09 Removing intermediate container 2e32a2fa03d7 build 17-Aug-2019 20:19:09 ---> 8f92516f4d88 build 17-Aug-2019 20:19:09 Step 5/11 : USER root build 17-Aug-2019 20:19:09 ---> Running in 68ad9b8c9c57 build 17-Aug-2019 20:19:10 Removing intermediate container 68ad9b8c9c57 build 17-Aug-2019 20:19:10 ---> b0aff34f52a4 build 17-Aug-2019 20:19:10 Step 6/11 : RUN pip install --upgrade pip build 17-Aug-2019 20:19:10 ---> Running in f9aae64e874c build 17-Aug-2019 20:19:12 Collecting pip build 17-Aug-2019 20:19:12 Downloading https://files.pythonhosted.org/packages/8d/07/f7d7ced2f97ca3098c16565efbe6b15fafcba53e8d9bdb431e09140514b0/pip-19.2.2-py2.py3-none-any.whl (1.4MB) build 17-Aug-2019 20:19:12 Installing collected packages: pip build 17-Aug-2019 20:19:12 Found existing installation: pip 8.1.1 build 17-Aug-2019 20:19:12 Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr build 17-Aug-2019 20:19:13 Successfully installed pip-19.2.2 build 17-Aug-2019 20:19:15 Removing intermediate container f9aae64e874c build 17-Aug-2019 20:19:15 ---> affb93ff8dff build 17-Aug-2019 20:19:15 Step 7/11 : RUN apt-get -qq -y update && apt-get -y install libxext6 libxmu6 libxt6 wget && mkdir -p /matlab && rm -rf /var/lib/apt/lists/* build 17-Aug-2019 20:19:15 ---> Running in 77f6ff928732 build 17-Aug-2019 20:19:22 Reading package lists... build 17-Aug-2019 20:19:22 Building dependency tree... build 17-Aug-2019 20:19:22 Reading state information... build 17-Aug-2019 20:19:22 The following additional packages will be installed: build 17-Aug-2019 20:19:22 libice6 libidn11 libsm6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 build 17-Aug-2019 20:19:22 x11-common build 17-Aug-2019 20:19:22 The following NEW packages will be installed: build 17-Aug-2019 20:19:22 libice6 libidn11 libsm6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 build 17-Aug-2019 20:19:22 libxext6 libxmu6 libxt6 wget x11-common build 17-Aug-2019 20:19:22 0 upgraded, 13 newly installed, 0 to remove and 55 not upgraded. build 17-Aug-2019 20:19:22 Need to get 1402 kB of archives. build 17-Aug-2019 20:19:22 After this operation, 5597 kB of additional disk space will be used. build 17-Aug-2019 20:19:22 Get:1 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] build 17-Aug-2019 20:19:22 Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxdmcp6 amd64 1:1.1.2-1.1 [11.0 kB] build 17-Aug-2019 20:19:22 Get:3 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb1 amd64 1.11.1-1ubuntu1 [40.0 kB] build 17-Aug-2019 20:19:22 Get:4 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-data all 2:1.6.3-1ubuntu2.1 [113 kB] build 17-Aug-2019 20:19:22 Get:5 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-6 amd64 2:1.6.3-1ubuntu2.1 [570 kB] build 17-Aug-2019 20:19:23 Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB] build 17-Aug-2019 20:19:23 Get:7 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 x11-common all 1:7.7+13ubuntu3.1 [22.9 kB] build 17-Aug-2019 20:19:23 Get:8 http://archive.ubuntu.com/ubuntu xenial/main amd64 libice6 amd64 2:1.0.9-1 [39.2 kB] build 17-Aug-2019 20:19:23 Get:9 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB] build 17-Aug-2019 20:19:23 Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libidn11 amd64 1.32-3ubuntu1.2 [46.5 kB] build 17-Aug-2019 20:19:23 Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 wget amd64 1.17.1-1ubuntu1.5 [299 kB] build 17-Aug-2019 20:19:23 Get:12 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxt6 amd64 1:1.1.5-0ubuntu1 [160 kB] build 17-Aug-2019 20:19:23 Get:13 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxmu6 amd64 2:1.1.2-2 [46.0 kB] build 17-Aug-2019 20:19:23 debconf: delaying package configuration, since apt-utils is not installed build 17-Aug-2019 20:19:23 Fetched 1402 kB in 0s (1612 kB/s) build 17-Aug-2019 20:19:24 Selecting previously unselected package libxau6:amd64. build 17-Aug-2019 20:19:24 (Reading database ... build 17-Aug-2019 20:19:24 (Reading database ... 5% build 17-Aug-2019 20:19:24 (Reading database ... 10% build 17-Aug-2019 20:19:24 (Reading database ... 15% build 17-Aug-2019 20:19:24 (Reading database ... 20% build 17-Aug-2019 20:19:24 (Reading database ... 25% build 17-Aug-2019 20:19:24 (Reading database ... 30% build 17-Aug-2019 20:19:24 (Reading database ... 35% build 17-Aug-2019 20:19:24 (Reading database ... 40% build 17-Aug-2019 20:19:24 (Reading database ... 45% build 17-Aug-2019 20:19:24 (Reading database ... 50% build 17-Aug-2019 20:19:24 (Reading database ... 55% build 17-Aug-2019 20:19:24 (Reading database ... 60% build 17-Aug-2019 20:19:24 (Reading database ... 65% build 17-Aug-2019 20:19:24 (Reading database ... 70% build 17-Aug-2019 20:19:24 (Reading database ... 75% build 17-Aug-2019 20:19:24 (Reading database ... 80% build 17-Aug-2019 20:19:24 (Reading database ... 85% build 17-Aug-2019 20:19:24 (Reading database ... 90% build 17-Aug-2019 20:19:24 (Reading database ... 95% build 17-Aug-2019 20:19:24 (Reading database ... 100% build 17-Aug-2019 20:19:24 (Reading database ... 6101 files and directories currently installed.) build 17-Aug-2019 20:19:24 Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... build 17-Aug-2019 20:19:24 Unpacking libxau6:amd64 (1:1.0.8-1) ... build 17-Aug-2019 20:19:24 Selecting previously unselected package libxdmcp6:amd64. build 17-Aug-2019 20:19:24 Preparing to unpack .../libxdmcp6_1%3a1.1.2-1.1_amd64.deb ... build 17-Aug-2019 20:19:24 Unpacking libxdmcp6:amd64 (1:1.1.2-1.1) ... build 17-Aug-2019 20:19:25 Selecting previously unselected package libxcb1:amd64. build 17-Aug-2019 20:19:25 Preparing to unpack .../libxcb1_1.11.1-1ubuntu1_amd64.deb ... build 17-Aug-2019 20:19:25 Unpacking libxcb1:amd64 (1.11.1-1ubuntu1) ... build 17-Aug-2019 20:19:25 Selecting previously unselected package libx11-data. build 17-Aug-2019 20:19:25 Preparing to unpack .../libx11-data_2%3a1.6.3-1ubuntu2.1_all.deb ... build 17-Aug-2019 20:19:25 Unpacking libx11-data (2:1.6.3-1ubuntu2.1) ... build 17-Aug-2019 20:19:27 Selecting previously unselected package libx11-6:amd64. build 17-Aug-2019 20:19:27 Preparing to unpack .../libx11-6_2%3a1.6.3-1ubuntu2.1_amd64.deb ... build 17-Aug-2019 20:19:27 Unpacking libx11-6:amd64 (2:1.6.3-1ubuntu2.1) ... build 17-Aug-2019 20:19:28 Selecting previously unselected package libxext6:amd64. build 17-Aug-2019 20:19:28 Preparing to unpack .../libxext6_2%3a1.3.3-1_amd64.deb ... build 17-Aug-2019 20:19:29 Unpacking libxext6:amd64 (2:1.3.3-1) ... build 17-Aug-2019 20:19:29 Selecting previously unselected package x11-common. build 17-Aug-2019 20:19:29 Preparing to unpack .../x11-common_1%3a7.7+13ubuntu3.1_all.deb ... build 17-Aug-2019 20:19:29 dpkg-query: no packages found matching nux-tools build 17-Aug-2019 20:19:29 Unpacking x11-common (1:7.7+13ubuntu3.1) ... build 17-Aug-2019 20:19:30 Selecting previously unselected package libice6:amd64. build 17-Aug-2019 20:19:30 Preparing to unpack .../libice6_2%3a1.0.9-1_amd64.deb ... build 17-Aug-2019 20:19:30 Unpacking libice6:amd64 (2:1.0.9-1) ... build 17-Aug-2019 20:19:32 Selecting previously unselected package libsm6:amd64. build 17-Aug-2019 20:19:32 Preparing to unpack .../libsm6_2%3a1.2.2-1_amd64.deb ... build 17-Aug-2019 20:19:32 Unpacking libsm6:amd64 (2:1.2.2-1) ... build 17-Aug-2019 20:19:33 Selecting previously unselected package libidn11:amd64. build 17-Aug-2019 20:19:33 Preparing to unpack .../libidn11_1.32-3ubuntu1.2_amd64.deb ... build 17-Aug-2019 20:19:33 Unpacking libidn11:amd64 (1.32-3ubuntu1.2) ... build 17-Aug-2019 20:19:34 Selecting previously unselected package wget. build 17-Aug-2019 20:19:34 Preparing to unpack .../wget_1.17.1-1ubuntu1.5_amd64.deb ... build 17-Aug-2019 20:19:34 Unpacking wget (1.17.1-1ubuntu1.5) ... build 17-Aug-2019 20:19:35 Selecting previously unselected package libxt6:amd64. build 17-Aug-2019 20:19:35 Preparing to unpack .../libxt6_1%3a1.1.5-0ubuntu1_amd64.deb ... build 17-Aug-2019 20:19:35 Unpacking libxt6:amd64 (1:1.1.5-0ubuntu1) ... build 17-Aug-2019 20:19:36 Selecting previously unselected package libxmu6:amd64. build 17-Aug-2019 20:19:36 Preparing to unpack .../libxmu6_2%3a1.1.2-2_amd64.deb ... build 17-Aug-2019 20:19:36 Unpacking libxmu6:amd64 (2:1.1.2-2) ... build 17-Aug-2019 20:19:37 Processing triggers for libc-bin (2.23-0ubuntu9) ... build 17-Aug-2019 20:19:37 Processing triggers for systemd (229-4ubuntu19) ... build 17-Aug-2019 20:19:37 Setting up libxau6:amd64 (1:1.0.8-1) ... build 17-Aug-2019 20:19:38 Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... build 17-Aug-2019 20:19:38 Setting up libxcb1:amd64 (1.11.1-1ubuntu1) ... build 17-Aug-2019 20:19:39 Setting up libx11-data (2:1.6.3-1ubuntu2.1) ... build 17-Aug-2019 20:19:39 Setting up libx11-6:amd64 (2:1.6.3-1ubuntu2.1) ... build 17-Aug-2019 20:19:40 Setting up libxext6:amd64 (2:1.3.3-1) ... build 17-Aug-2019 20:19:40 Setting up x11-common (1:7.7+13ubuntu3.1) ... build 17-Aug-2019 20:19:42 debconf: unable to initialize frontend: Dialog build 17-Aug-2019 20:19:42 debconf: (TERM is not set, so the dialog frontend is not usable.) build 17-Aug-2019 20:19:42 debconf: falling back to frontend: Readline build 17-Aug-2019 20:19:42 debconf: unable to initialize frontend: Readline build 17-Aug-2019 20:19:42 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) build 17-Aug-2019 20:19:42 debconf: falling back to frontend: Teletype build 17-Aug-2019 20:19:42 update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults build 17-Aug-2019 20:19:42 invoke-rc.d: could not determine current runlevel build 17-Aug-2019 20:19:42 invoke-rc.d: policy-rc.d denied execution of start. build 17-Aug-2019 20:19:42 Setting up libice6:amd64 (2:1.0.9-1) ... build 17-Aug-2019 20:19:43 Setting up libsm6:amd64 (2:1.2.2-1) ... build 17-Aug-2019 20:19:44 Setting up libidn11:amd64 (1.32-3ubuntu1.2) ... build 17-Aug-2019 20:19:44 Setting up wget (1.17.1-1ubuntu1.5) ... build 17-Aug-2019 20:19:44 Setting up libxt6:amd64 (1:1.1.5-0ubuntu1) ... build 17-Aug-2019 20:19:44 Setting up libxmu6:amd64 (2:1.1.2-2) ... build 17-Aug-2019 20:19:45 Processing triggers for libc-bin (2.23-0ubuntu9) ... build 17-Aug-2019 20:19:45 Processing triggers for systemd (229-4ubuntu19) ... build 17-Aug-2019 20:19:47 Removing intermediate container 77f6ff928732 build 17-Aug-2019 20:19:47 ---> 2c019d780774 build 17-Aug-2019 20:19:47 Step 8/11 : USER clowder build 17-Aug-2019 20:19:48 ---> Running in b825a8e5fee0 build 17-Aug-2019 20:19:49 Removing intermediate container b825a8e5fee0 build 17-Aug-2019 20:19:49 ---> ce435c4e674d build 17-Aug-2019 20:19:49 Step 9/11 : COPY entrypoint.sh *.py *.m data/*.mat *.json /home/clowder/ build 17-Aug-2019 20:19:51 ---> 10aeaabd067e build 17-Aug-2019 20:19:51 Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 17-Aug-2019 20:19:51 ---> Running in f0aaea24b033 build 17-Aug-2019 20:19:51 Removing intermediate container f0aaea24b033 build 17-Aug-2019 20:19:51 ---> 3144db607c40 build 17-Aug-2019 20:19:51 Step 11/11 : CMD ["extractor"] build 17-Aug-2019 20:19:52 ---> Running in 242cab7d6529 build 17-Aug-2019 20:19:53 Removing intermediate container 242cab7d6529 build 17-Aug-2019 20:19:53 ---> 121042f8ed7e build 17-Aug-2019 20:19:53 Successfully built 121042f8ed7e build 17-Aug-2019 20:19:53 Successfully tagged 5903:latest build 17-Aug-2019 20:19:54 The push refers to repository [docker.io/clowder/extractors-msc-kidney] build 17-Aug-2019 20:19:54 af84e69b700c: Preparing build 17-Aug-2019 20:19:54 18c165cdf8c8: Preparing build 17-Aug-2019 20:19:54 ee18a427d82a: Preparing build 17-Aug-2019 20:19:54 0cdb02ac1d86: Preparing build 17-Aug-2019 20:19:54 f2297bdfc824: Preparing build 17-Aug-2019 20:19:54 0fbe2bcb1bf9: Preparing build 17-Aug-2019 20:19:54 59669fcdd5eb: Preparing build 17-Aug-2019 20:19:54 7f7a065d245a: Preparing build 17-Aug-2019 20:19:54 f96e6b25195f: Preparing build 17-Aug-2019 20:19:54 c56153825175: Preparing build 17-Aug-2019 20:19:54 ae620432889d: Preparing build 17-Aug-2019 20:19:54 a2022691bf95: Preparing build 17-Aug-2019 20:19:54 59669fcdd5eb: Waiting build 17-Aug-2019 20:19:54 7f7a065d245a: Waiting build 17-Aug-2019 20:19:54 f96e6b25195f: Waiting build 17-Aug-2019 20:19:54 c56153825175: Waiting build 17-Aug-2019 20:19:54 ae620432889d: Waiting build 17-Aug-2019 20:19:54 a2022691bf95: Waiting build 17-Aug-2019 20:19:54 0fbe2bcb1bf9: Waiting build 17-Aug-2019 20:19:54 f2297bdfc824: Layer already exists build 17-Aug-2019 20:19:54 0cdb02ac1d86: Layer already exists build 17-Aug-2019 20:19:55 0fbe2bcb1bf9: Layer already exists build 17-Aug-2019 20:19:55 59669fcdd5eb: Layer already exists build 17-Aug-2019 20:19:55 7f7a065d245a: Layer already exists build 17-Aug-2019 20:19:55 f96e6b25195f: Layer already exists build 17-Aug-2019 20:19:55 c56153825175: Layer already exists build 17-Aug-2019 20:19:55 ae620432889d: Layer already exists build 17-Aug-2019 20:19:55 a2022691bf95: Layer already exists build 17-Aug-2019 20:19:56 af84e69b700c: Pushed build 17-Aug-2019 20:19:56 18c165cdf8c8: Pushed build 17-Aug-2019 20:19:56 ee18a427d82a: Pushed build 17-Aug-2019 20:19:59 browndog_v0.2.0: digest: sha256:84a6605aaf1c5c36f8305aab20360aed8b0ff6a349dbbf7365ca9294f1827f47 size: 2826 build 17-Aug-2019 20:19:59 The push refers to repository [docker.io/clowder/extractors-msc-kidney] build 17-Aug-2019 20:19:59 af84e69b700c: Preparing build 17-Aug-2019 20:19:59 18c165cdf8c8: Preparing build 17-Aug-2019 20:19:59 ee18a427d82a: Preparing build 17-Aug-2019 20:19:59 0cdb02ac1d86: Preparing build 17-Aug-2019 20:19:59 f2297bdfc824: Preparing build 17-Aug-2019 20:19:59 0fbe2bcb1bf9: Preparing build 17-Aug-2019 20:19:59 59669fcdd5eb: Preparing build 17-Aug-2019 20:19:59 7f7a065d245a: Preparing build 17-Aug-2019 20:19:59 f96e6b25195f: Preparing build 17-Aug-2019 20:19:59 c56153825175: Preparing build 17-Aug-2019 20:19:59 ae620432889d: Preparing build 17-Aug-2019 20:19:59 a2022691bf95: Preparing build 17-Aug-2019 20:19:59 0fbe2bcb1bf9: Waiting build 17-Aug-2019 20:19:59 c56153825175: Waiting build 17-Aug-2019 20:19:59 ae620432889d: Waiting build 17-Aug-2019 20:19:59 59669fcdd5eb: Waiting build 17-Aug-2019 20:19:59 a2022691bf95: Waiting build 17-Aug-2019 20:19:59 7f7a065d245a: Waiting build 17-Aug-2019 20:19:59 f96e6b25195f: Waiting build 17-Aug-2019 20:20:00 f2297bdfc824: Layer already exists build 17-Aug-2019 20:20:00 ee18a427d82a: Layer already exists build 17-Aug-2019 20:20:00 0cdb02ac1d86: Layer already exists build 17-Aug-2019 20:20:00 af84e69b700c: Layer already exists build 17-Aug-2019 20:20:00 18c165cdf8c8: Layer already exists build 17-Aug-2019 20:20:00 0fbe2bcb1bf9: Layer already exists build 17-Aug-2019 20:20:00 f96e6b25195f: Layer already exists build 17-Aug-2019 20:20:00 59669fcdd5eb: Layer already exists build 17-Aug-2019 20:20:00 c56153825175: Layer already exists build 17-Aug-2019 20:20:00 7f7a065d245a: Layer already exists build 17-Aug-2019 20:20:00 ae620432889d: Layer already exists build 17-Aug-2019 20:20:00 a2022691bf95: Layer already exists build 17-Aug-2019 20:20:01 browndog_v0.3.0: digest: sha256:84a6605aaf1c5c36f8305aab20360aed8b0ff6a349dbbf7365ca9294f1827f47 size: 2826 build 17-Aug-2019 20:20:01 The push refers to repository [docker.io/clowder/extractors-msc-kidney] build 17-Aug-2019 20:20:01 af84e69b700c: Preparing build 17-Aug-2019 20:20:01 18c165cdf8c8: Preparing build 17-Aug-2019 20:20:01 ee18a427d82a: Preparing build 17-Aug-2019 20:20:01 0cdb02ac1d86: Preparing build 17-Aug-2019 20:20:01 f2297bdfc824: Preparing build 17-Aug-2019 20:20:01 0fbe2bcb1bf9: Preparing build 17-Aug-2019 20:20:01 59669fcdd5eb: Preparing build 17-Aug-2019 20:20:01 7f7a065d245a: Preparing build 17-Aug-2019 20:20:01 f96e6b25195f: Preparing build 17-Aug-2019 20:20:01 c56153825175: Preparing build 17-Aug-2019 20:20:01 ae620432889d: Preparing build 17-Aug-2019 20:20:01 a2022691bf95: Preparing build 17-Aug-2019 20:20:01 59669fcdd5eb: Waiting build 17-Aug-2019 20:20:01 7f7a065d245a: Waiting build 17-Aug-2019 20:20:01 f96e6b25195f: Waiting build 17-Aug-2019 20:20:01 c56153825175: Waiting build 17-Aug-2019 20:20:01 0fbe2bcb1bf9: Waiting build 17-Aug-2019 20:20:01 ae620432889d: Waiting build 17-Aug-2019 20:20:01 a2022691bf95: Waiting build 17-Aug-2019 20:20:01 18c165cdf8c8: Layer already exists build 17-Aug-2019 20:20:02 0cdb02ac1d86: Layer already exists build 17-Aug-2019 20:20:02 ee18a427d82a: Layer already exists build 17-Aug-2019 20:20:02 af84e69b700c: Layer already exists build 17-Aug-2019 20:20:02 f2297bdfc824: Layer already exists build 17-Aug-2019 20:20:02 7f7a065d245a: Layer already exists build 17-Aug-2019 20:20:02 0fbe2bcb1bf9: Layer already exists build 17-Aug-2019 20:20:02 c56153825175: Layer already exists build 17-Aug-2019 20:20:02 ae620432889d: Layer already exists build 17-Aug-2019 20:20:02 59669fcdd5eb: Layer already exists build 17-Aug-2019 20:20:02 f96e6b25195f: Layer already exists build 17-Aug-2019 20:20:02 a2022691bf95: Layer already exists build 17-Aug-2019 20:20:03 latest: digest: sha256:84a6605aaf1c5c36f8305aab20360aed8b0ff6a349dbbf7365ca9294f1827f47 size: 2826 build 17-Aug-2019 20:20:03 Untagged: 5903:latest build 17-Aug-2019 20:20:03 Sending build context to Docker daemon 67.07kB build 17-Aug-2019 20:20:03 build 17-Aug-2019 20:20:03 Step 1/11 : FROM clowder/pyclowder:1 build 17-Aug-2019 20:20:03 ---> d1a9e970ed30 build 17-Aug-2019 20:20:03 Step 2/11 : MAINTAINER Yan Zhao build 17-Aug-2019 20:20:04 ---> Running in 2642227af74e build 17-Aug-2019 20:20:04 Removing intermediate container 2642227af74e build 17-Aug-2019 20:20:04 ---> 46f6d1fdf076 build 17-Aug-2019 20:20:04 Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.IsletExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Islet.py" build 17-Aug-2019 20:20:04 ---> Running in 5c7c383af8e0 build 17-Aug-2019 20:20:05 Removing intermediate container 5c7c383af8e0 build 17-Aug-2019 20:20:05 ---> af9d0d799b73 build 17-Aug-2019 20:20:05 Step 4/11 : USER root build 17-Aug-2019 20:20:05 ---> Running in e6e7075b7730 build 17-Aug-2019 20:20:06 Removing intermediate container e6e7075b7730 build 17-Aug-2019 20:20:06 ---> 23fdccd890ec build 17-Aug-2019 20:20:06 Step 5/11 : COPY requirements.txt /home/clowder/ build 17-Aug-2019 20:20:07 ---> 3b2ac778ff8b build 17-Aug-2019 20:20:07 Step 6/11 : RUN pip install --upgrade pip build 17-Aug-2019 20:20:07 ---> Running in f4d97ba420ee build 17-Aug-2019 20:20:09 Collecting pip build 17-Aug-2019 20:20:09 Downloading https://files.pythonhosted.org/packages/8d/07/f7d7ced2f97ca3098c16565efbe6b15fafcba53e8d9bdb431e09140514b0/pip-19.2.2-py2.py3-none-any.whl (1.4MB) build 17-Aug-2019 20:20:09 Installing collected packages: pip build 17-Aug-2019 20:20:09 Found existing installation: pip 8.1.1 build 17-Aug-2019 20:20:09 Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr build 17-Aug-2019 20:20:10 Successfully installed pip-19.2.2 build 17-Aug-2019 20:20:12 Removing intermediate container f4d97ba420ee build 17-Aug-2019 20:20:12 ---> 61fe9668549b build 17-Aug-2019 20:20:12 Step 7/11 : RUN pip install -r /home/clowder/requirements.txt build 17-Aug-2019 20:20:12 ---> Running in 5c99558a171f build 17-Aug-2019 20:20:15 DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support build 17-Aug-2019 20:20:15 Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) build 17-Aug-2019 20:20:15 Collecting openpyxl==1.6.2 (from -r /home/clowder/requirements.txt (line 2)) build 17-Aug-2019 20:20:15 Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) build 17-Aug-2019 20:20:15 Collecting pika==0.9.14 (from -r /home/clowder/requirements.txt (line 3)) build 17-Aug-2019 20:20:15 Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) build 17-Aug-2019 20:20:15 Collecting pymongo==3.2.1 (from -r /home/clowder/requirements.txt (line 4)) build 17-Aug-2019 20:20:16 Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) build 17-Aug-2019 20:20:16 Collecting pytz==2014.3 (from -r /home/clowder/requirements.txt (line 5)) build 17-Aug-2019 20:20:17 Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) build 17-Aug-2019 20:20:17 Collecting requests==2.2.1 (from -r /home/clowder/requirements.txt (line 6)) build 17-Aug-2019 20:20:17 Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) build 17-Aug-2019 20:20:17 Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) build 17-Aug-2019 20:20:17 Collecting xlrd==0.9.3 (from -r /home/clowder/requirements.txt (line 8)) build 17-Aug-2019 20:20:17 Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) build 17-Aug-2019 20:20:18 Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd build 17-Aug-2019 20:20:18 Running setup.py install for openpyxl: started build 17-Aug-2019 20:20:18 Running setup.py install for openpyxl: finished with status 'done' build 17-Aug-2019 20:20:18 Found existing installation: pika 0.11.0 build 17-Aug-2019 20:20:18 Uninstalling pika-0.11.0: build 17-Aug-2019 20:20:18 Successfully uninstalled pika-0.11.0 build 17-Aug-2019 20:20:18 Running setup.py install for pika: started build 17-Aug-2019 20:20:18 Running setup.py install for pika: finished with status 'done' build 17-Aug-2019 20:20:18 Running setup.py install for pymongo: started build 17-Aug-2019 20:20:19 Running setup.py install for pymongo: finished with status 'done' build 17-Aug-2019 20:20:19 Running setup.py install for pytz: started build 17-Aug-2019 20:20:19 Running setup.py install for pytz: finished with status 'done' build 17-Aug-2019 20:20:19 Found existing installation: requests 2.18.4 build 17-Aug-2019 20:20:19 Uninstalling requests-2.18.4: build 17-Aug-2019 20:20:19 Successfully uninstalled requests-2.18.4 build 17-Aug-2019 20:20:19 Running setup.py install for xlrd: started build 17-Aug-2019 20:20:20 Running setup.py install for xlrd: finished with status 'done' build 17-Aug-2019 20:20:20 Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 build 17-Aug-2019 20:20:22 Removing intermediate container 5c99558a171f build 17-Aug-2019 20:20:22 ---> 0ca0af53c3d9 build 17-Aug-2019 20:20:22 Step 8/11 : USER clowder build 17-Aug-2019 20:20:23 ---> Running in 3dbdee021426 build 17-Aug-2019 20:20:23 Removing intermediate container 3dbdee021426 build 17-Aug-2019 20:20:23 ---> 616b5d3c750b build 17-Aug-2019 20:20:23 Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ build 17-Aug-2019 20:20:24 ---> 6ddcfe283daf build 17-Aug-2019 20:20:24 Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 17-Aug-2019 20:20:24 ---> Running in e145cf7a8c4b build 17-Aug-2019 20:20:25 Removing intermediate container e145cf7a8c4b build 17-Aug-2019 20:20:25 ---> f37d40b6aa68 build 17-Aug-2019 20:20:25 Step 11/11 : CMD ["extractor"] build 17-Aug-2019 20:20:25 ---> Running in d4e5e94afccf build 17-Aug-2019 20:20:26 Removing intermediate container d4e5e94afccf build 17-Aug-2019 20:20:26 ---> 85500ed90c5e build 17-Aug-2019 20:20:26 Successfully built 85500ed90c5e build 17-Aug-2019 20:20:26 Successfully tagged 5903:latest build 17-Aug-2019 20:20:26 The push refers to repository [docker.io/clowder/extractors-msc-islet] build 17-Aug-2019 20:20:27 dfd2181cf16e: Preparing build 17-Aug-2019 20:20:27 2baf610cb686: Preparing build 17-Aug-2019 20:20:27 4f423416bc8b: Preparing build 17-Aug-2019 20:20:27 fe60c3145332: Preparing build 17-Aug-2019 20:20:27 0cdb02ac1d86: Preparing build 17-Aug-2019 20:20:27 f2297bdfc824: Preparing build 17-Aug-2019 20:20:27 0fbe2bcb1bf9: Preparing build 17-Aug-2019 20:20:27 59669fcdd5eb: Preparing build 17-Aug-2019 20:20:27 7f7a065d245a: Preparing build 17-Aug-2019 20:20:27 f96e6b25195f: Preparing build 17-Aug-2019 20:20:27 c56153825175: Preparing build 17-Aug-2019 20:20:27 ae620432889d: Preparing build 17-Aug-2019 20:20:27 a2022691bf95: Preparing build 17-Aug-2019 20:20:27 f2297bdfc824: Waiting build 17-Aug-2019 20:20:27 0fbe2bcb1bf9: Waiting build 17-Aug-2019 20:20:27 59669fcdd5eb: Waiting build 17-Aug-2019 20:20:27 7f7a065d245a: Waiting build 17-Aug-2019 20:20:27 f96e6b25195f: Waiting build 17-Aug-2019 20:20:27 c56153825175: Waiting build 17-Aug-2019 20:20:27 ae620432889d: Waiting build 17-Aug-2019 20:20:27 a2022691bf95: Waiting build 17-Aug-2019 20:20:27 0cdb02ac1d86: Layer already exists build 17-Aug-2019 20:20:27 f2297bdfc824: Layer already exists build 17-Aug-2019 20:20:27 0fbe2bcb1bf9: Layer already exists build 17-Aug-2019 20:20:28 59669fcdd5eb: Layer already exists build 17-Aug-2019 20:20:28 7f7a065d245a: Layer already exists build 17-Aug-2019 20:20:28 dfd2181cf16e: Pushed build 17-Aug-2019 20:20:28 f96e6b25195f: Layer already exists build 17-Aug-2019 20:20:28 fe60c3145332: Pushed build 17-Aug-2019 20:20:28 c56153825175: Layer already exists build 17-Aug-2019 20:20:28 ae620432889d: Layer already exists build 17-Aug-2019 20:20:29 a2022691bf95: Layer already exists build 17-Aug-2019 20:20:29 4f423416bc8b: Pushed build 17-Aug-2019 20:20:29 2baf610cb686: Pushed build 17-Aug-2019 20:20:31 browndog_v0.2.0: digest: sha256:c90c27244fa5a60e1fbeb4fb4365c426df627e6257391abeac420cc384572367 size: 3031 build 17-Aug-2019 20:20:32 The push refers to repository [docker.io/clowder/extractors-msc-islet] build 17-Aug-2019 20:20:32 dfd2181cf16e: Preparing build 17-Aug-2019 20:20:32 2baf610cb686: Preparing build 17-Aug-2019 20:20:32 4f423416bc8b: Preparing build 17-Aug-2019 20:20:32 fe60c3145332: Preparing build 17-Aug-2019 20:20:32 0cdb02ac1d86: Preparing build 17-Aug-2019 20:20:32 f2297bdfc824: Preparing build 17-Aug-2019 20:20:32 0fbe2bcb1bf9: Preparing build 17-Aug-2019 20:20:32 59669fcdd5eb: Preparing build 17-Aug-2019 20:20:32 7f7a065d245a: Preparing build 17-Aug-2019 20:20:32 f96e6b25195f: Preparing build 17-Aug-2019 20:20:32 c56153825175: Preparing build 17-Aug-2019 20:20:32 ae620432889d: Preparing build 17-Aug-2019 20:20:32 a2022691bf95: Preparing build 17-Aug-2019 20:20:32 f2297bdfc824: Waiting build 17-Aug-2019 20:20:32 0fbe2bcb1bf9: Waiting build 17-Aug-2019 20:20:32 59669fcdd5eb: Waiting build 17-Aug-2019 20:20:32 7f7a065d245a: Waiting build 17-Aug-2019 20:20:32 f96e6b25195f: Waiting build 17-Aug-2019 20:20:32 c56153825175: Waiting build 17-Aug-2019 20:20:32 ae620432889d: Waiting build 17-Aug-2019 20:20:32 a2022691bf95: Waiting build 17-Aug-2019 20:20:32 fe60c3145332: Layer already exists build 17-Aug-2019 20:20:32 2baf610cb686: Layer already exists build 17-Aug-2019 20:20:32 4f423416bc8b: Layer already exists build 17-Aug-2019 20:20:32 dfd2181cf16e: Layer already exists build 17-Aug-2019 20:20:32 0cdb02ac1d86: Layer already exists build 17-Aug-2019 20:20:32 f2297bdfc824: Layer already exists build 17-Aug-2019 20:20:32 0fbe2bcb1bf9: Layer already exists build 17-Aug-2019 20:20:32 59669fcdd5eb: Layer already exists build 17-Aug-2019 20:20:32 7f7a065d245a: Layer already exists build 17-Aug-2019 20:20:33 f96e6b25195f: Layer already exists build 17-Aug-2019 20:20:33 c56153825175: Layer already exists build 17-Aug-2019 20:20:33 ae620432889d: Layer already exists build 17-Aug-2019 20:20:33 a2022691bf95: Layer already exists build 17-Aug-2019 20:20:33 browndog_v0.3.0: digest: sha256:c90c27244fa5a60e1fbeb4fb4365c426df627e6257391abeac420cc384572367 size: 3031 build 17-Aug-2019 20:20:34 The push refers to repository [docker.io/clowder/extractors-msc-islet] build 17-Aug-2019 20:20:34 dfd2181cf16e: Preparing build 17-Aug-2019 20:20:34 2baf610cb686: Preparing build 17-Aug-2019 20:20:34 4f423416bc8b: Preparing build 17-Aug-2019 20:20:34 fe60c3145332: Preparing build 17-Aug-2019 20:20:34 0cdb02ac1d86: Preparing build 17-Aug-2019 20:20:34 f2297bdfc824: Preparing build 17-Aug-2019 20:20:34 0fbe2bcb1bf9: Preparing build 17-Aug-2019 20:20:34 59669fcdd5eb: Preparing build 17-Aug-2019 20:20:34 7f7a065d245a: Preparing build 17-Aug-2019 20:20:34 f96e6b25195f: Preparing build 17-Aug-2019 20:20:34 c56153825175: Preparing build 17-Aug-2019 20:20:34 ae620432889d: Preparing build 17-Aug-2019 20:20:34 a2022691bf95: Preparing build 17-Aug-2019 20:20:34 f2297bdfc824: Waiting build 17-Aug-2019 20:20:34 0fbe2bcb1bf9: Waiting build 17-Aug-2019 20:20:34 59669fcdd5eb: Waiting build 17-Aug-2019 20:20:34 7f7a065d245a: Waiting build 17-Aug-2019 20:20:34 f96e6b25195f: Waiting build 17-Aug-2019 20:20:34 c56153825175: Waiting build 17-Aug-2019 20:20:34 ae620432889d: Waiting build 17-Aug-2019 20:20:34 a2022691bf95: Waiting build 17-Aug-2019 20:20:34 4f423416bc8b: Layer already exists build 17-Aug-2019 20:20:34 0cdb02ac1d86: Layer already exists build 17-Aug-2019 20:20:34 dfd2181cf16e: Layer already exists build 17-Aug-2019 20:20:34 fe60c3145332: Layer already exists build 17-Aug-2019 20:20:34 2baf610cb686: Layer already exists build 17-Aug-2019 20:20:34 f2297bdfc824: Layer already exists build 17-Aug-2019 20:20:34 0fbe2bcb1bf9: Layer already exists build 17-Aug-2019 20:20:34 7f7a065d245a: Layer already exists build 17-Aug-2019 20:20:34 59669fcdd5eb: Layer already exists build 17-Aug-2019 20:20:34 f96e6b25195f: Layer already exists build 17-Aug-2019 20:20:34 c56153825175: Layer already exists build 17-Aug-2019 20:20:34 a2022691bf95: Layer already exists build 17-Aug-2019 20:20:35 ae620432889d: Layer already exists build 17-Aug-2019 20:20:35 latest: digest: sha256:c90c27244fa5a60e1fbeb4fb4365c426df627e6257391abeac420cc384572367 size: 3031 build 17-Aug-2019 20:20:35 Untagged: 5903:latest build 17-Aug-2019 20:20:35 Sending build context to Docker daemon 66.05kB build 17-Aug-2019 20:20:35 build 17-Aug-2019 20:20:35 Step 1/11 : FROM clowder/pyclowder:1 build 17-Aug-2019 20:20:35 ---> d1a9e970ed30 build 17-Aug-2019 20:20:35 Step 2/11 : MAINTAINER Yan Zhao build 17-Aug-2019 20:20:35 ---> Using cache build 17-Aug-2019 20:20:35 ---> 46f6d1fdf076 build 17-Aug-2019 20:20:35 Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.ChemCBCExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Chem.py" build 17-Aug-2019 20:20:36 ---> Running in 768456e09d46 build 17-Aug-2019 20:20:36 Removing intermediate container 768456e09d46 build 17-Aug-2019 20:20:36 ---> 1ce841923ee8 build 17-Aug-2019 20:20:36 Step 4/11 : USER root build 17-Aug-2019 20:20:36 ---> Running in 3d4224514c81 build 17-Aug-2019 20:20:37 Removing intermediate container 3d4224514c81 build 17-Aug-2019 20:20:37 ---> 31f46bba6828 build 17-Aug-2019 20:20:37 Step 5/11 : COPY requirements.txt /home/clowder/ build 17-Aug-2019 20:20:38 ---> 56c4c259f8ba build 17-Aug-2019 20:20:38 Step 6/11 : RUN pip install --upgrade pip build 17-Aug-2019 20:20:38 ---> Running in b7686fc2e6a6 build 17-Aug-2019 20:20:40 Collecting pip build 17-Aug-2019 20:20:40 Downloading https://files.pythonhosted.org/packages/8d/07/f7d7ced2f97ca3098c16565efbe6b15fafcba53e8d9bdb431e09140514b0/pip-19.2.2-py2.py3-none-any.whl (1.4MB) build 17-Aug-2019 20:20:40 Installing collected packages: pip build 17-Aug-2019 20:20:40 Found existing installation: pip 8.1.1 build 17-Aug-2019 20:20:40 Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr build 17-Aug-2019 20:20:41 Successfully installed pip-19.2.2 build 17-Aug-2019 20:20:43 Removing intermediate container b7686fc2e6a6 build 17-Aug-2019 20:20:43 ---> ab0eaf595b56 build 17-Aug-2019 20:20:43 Step 7/11 : RUN pip install -r /home/clowder/requirements.txt build 17-Aug-2019 20:20:43 ---> Running in 4a948a80c4ed build 17-Aug-2019 20:20:44 DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support build 17-Aug-2019 20:20:44 Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) build 17-Aug-2019 20:20:44 Collecting openpyxl==1.6.2 (from -r /home/clowder/requirements.txt (line 2)) build 17-Aug-2019 20:20:45 Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) build 17-Aug-2019 20:20:45 Collecting pika==0.9.14 (from -r /home/clowder/requirements.txt (line 3)) build 17-Aug-2019 20:20:45 Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) build 17-Aug-2019 20:20:45 Collecting pymongo==3.2.1 (from -r /home/clowder/requirements.txt (line 4)) build 17-Aug-2019 20:20:46 Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) build 17-Aug-2019 20:20:46 Collecting pytz==2014.3 (from -r /home/clowder/requirements.txt (line 5)) build 17-Aug-2019 20:20:46 Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) build 17-Aug-2019 20:20:47 Collecting requests==2.2.1 (from -r /home/clowder/requirements.txt (line 6)) build 17-Aug-2019 20:20:47 Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) build 17-Aug-2019 20:20:47 Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) build 17-Aug-2019 20:20:47 Collecting xlrd==0.9.3 (from -r /home/clowder/requirements.txt (line 8)) build 17-Aug-2019 20:20:47 Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) build 17-Aug-2019 20:20:47 Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd build 17-Aug-2019 20:20:47 Running setup.py install for openpyxl: started build 17-Aug-2019 20:20:48 Running setup.py install for openpyxl: finished with status 'done' build 17-Aug-2019 20:20:48 Found existing installation: pika 0.11.0 build 17-Aug-2019 20:20:48 Uninstalling pika-0.11.0: build 17-Aug-2019 20:20:48 Successfully uninstalled pika-0.11.0 build 17-Aug-2019 20:20:48 Running setup.py install for pika: started build 17-Aug-2019 20:20:48 Running setup.py install for pika: finished with status 'done' build 17-Aug-2019 20:20:48 Running setup.py install for pymongo: started build 17-Aug-2019 20:20:48 Running setup.py install for pymongo: finished with status 'done' build 17-Aug-2019 20:20:48 Running setup.py install for pytz: started build 17-Aug-2019 20:20:49 Running setup.py install for pytz: finished with status 'done' build 17-Aug-2019 20:20:49 Found existing installation: requests 2.18.4 build 17-Aug-2019 20:20:49 Uninstalling requests-2.18.4: build 17-Aug-2019 20:20:49 Successfully uninstalled requests-2.18.4 build 17-Aug-2019 20:20:49 Running setup.py install for xlrd: started build 17-Aug-2019 20:20:50 Running setup.py install for xlrd: finished with status 'done' build 17-Aug-2019 20:20:50 Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 build 17-Aug-2019 20:20:51 Removing intermediate container 4a948a80c4ed build 17-Aug-2019 20:20:51 ---> 8115d9f642e2 build 17-Aug-2019 20:20:51 Step 8/11 : USER clowder build 17-Aug-2019 20:20:52 ---> Running in 34ba97592dd2 build 17-Aug-2019 20:20:53 Removing intermediate container 34ba97592dd2 build 17-Aug-2019 20:20:53 ---> 64c03002ac37 build 17-Aug-2019 20:20:53 Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ build 17-Aug-2019 20:20:54 ---> c483b1845260 build 17-Aug-2019 20:20:54 Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 17-Aug-2019 20:20:55 ---> Running in c02a2923cbe2 build 17-Aug-2019 20:20:55 Removing intermediate container c02a2923cbe2 build 17-Aug-2019 20:20:55 ---> c15d5523124b build 17-Aug-2019 20:20:55 Step 11/11 : CMD ["extractor"] build 17-Aug-2019 20:20:56 ---> Running in 25ba79dc6873 build 17-Aug-2019 20:20:56 Removing intermediate container 25ba79dc6873 build 17-Aug-2019 20:20:56 ---> 5e9040bbdf15 build 17-Aug-2019 20:20:56 Successfully built 5e9040bbdf15 build 17-Aug-2019 20:20:56 Successfully tagged 5903:latest build 17-Aug-2019 20:20:56 The push refers to repository [docker.io/clowder/extractors-msc-chemcbc] build 17-Aug-2019 20:20:57 1c090297c37c: Preparing build 17-Aug-2019 20:20:57 654c8e3bc7f1: Preparing build 17-Aug-2019 20:20:57 796d512eb240: Preparing build 17-Aug-2019 20:20:57 b8558f2a0b6f: Preparing build 17-Aug-2019 20:20:57 0cdb02ac1d86: Preparing build 17-Aug-2019 20:20:57 f2297bdfc824: Preparing build 17-Aug-2019 20:20:57 0fbe2bcb1bf9: Preparing build 17-Aug-2019 20:20:57 59669fcdd5eb: Preparing build 17-Aug-2019 20:20:57 7f7a065d245a: Preparing build 17-Aug-2019 20:20:57 f96e6b25195f: Preparing build 17-Aug-2019 20:20:57 c56153825175: Preparing build 17-Aug-2019 20:20:57 ae620432889d: Preparing build 17-Aug-2019 20:20:57 a2022691bf95: Preparing build 17-Aug-2019 20:20:57 7f7a065d245a: Waiting build 17-Aug-2019 20:20:57 ae620432889d: Waiting build 17-Aug-2019 20:20:57 f96e6b25195f: Waiting build 17-Aug-2019 20:20:57 c56153825175: Waiting build 17-Aug-2019 20:20:57 0fbe2bcb1bf9: Waiting build 17-Aug-2019 20:20:57 a2022691bf95: Waiting build 17-Aug-2019 20:20:57 f2297bdfc824: Waiting build 17-Aug-2019 20:20:57 59669fcdd5eb: Waiting build 17-Aug-2019 20:20:57 0cdb02ac1d86: Layer already exists build 17-Aug-2019 20:20:57 f2297bdfc824: Layer already exists build 17-Aug-2019 20:20:58 0fbe2bcb1bf9: Layer already exists build 17-Aug-2019 20:20:58 59669fcdd5eb: Layer already exists build 17-Aug-2019 20:20:58 7f7a065d245a: Layer already exists build 17-Aug-2019 20:20:58 f96e6b25195f: Layer already exists build 17-Aug-2019 20:20:58 1c090297c37c: Pushed build 17-Aug-2019 20:20:58 b8558f2a0b6f: Pushed build 17-Aug-2019 20:20:58 c56153825175: Layer already exists build 17-Aug-2019 20:20:59 ae620432889d: Layer already exists build 17-Aug-2019 20:20:59 a2022691bf95: Layer already exists build 17-Aug-2019 20:20:59 796d512eb240: Pushed build 17-Aug-2019 20:20:59 654c8e3bc7f1: Pushed build 17-Aug-2019 20:21:02 browndog_v0.2.0: digest: sha256:3c0f413530aae2c6974c55cc6b96ad409760a9055c41109d60ffc1910d440b53 size: 3031 build 17-Aug-2019 20:21:02 The push refers to repository [docker.io/clowder/extractors-msc-chemcbc] build 17-Aug-2019 20:21:02 1c090297c37c: Preparing build 17-Aug-2019 20:21:02 654c8e3bc7f1: Preparing build 17-Aug-2019 20:21:02 796d512eb240: Preparing build 17-Aug-2019 20:21:02 b8558f2a0b6f: Preparing build 17-Aug-2019 20:21:02 0cdb02ac1d86: Preparing build 17-Aug-2019 20:21:02 f2297bdfc824: Preparing build 17-Aug-2019 20:21:02 0fbe2bcb1bf9: Preparing build 17-Aug-2019 20:21:02 59669fcdd5eb: Preparing build 17-Aug-2019 20:21:02 7f7a065d245a: Preparing build 17-Aug-2019 20:21:02 f96e6b25195f: Preparing build 17-Aug-2019 20:21:02 c56153825175: Preparing build 17-Aug-2019 20:21:02 ae620432889d: Preparing build 17-Aug-2019 20:21:02 a2022691bf95: Preparing build 17-Aug-2019 20:21:02 59669fcdd5eb: Waiting build 17-Aug-2019 20:21:02 7f7a065d245a: Waiting build 17-Aug-2019 20:21:02 f96e6b25195f: Waiting build 17-Aug-2019 20:21:02 c56153825175: Waiting build 17-Aug-2019 20:21:02 ae620432889d: Waiting build 17-Aug-2019 20:21:02 a2022691bf95: Waiting build 17-Aug-2019 20:21:02 f2297bdfc824: Waiting build 17-Aug-2019 20:21:02 0fbe2bcb1bf9: Waiting build 17-Aug-2019 20:21:02 0cdb02ac1d86: Layer already exists build 17-Aug-2019 20:21:02 654c8e3bc7f1: Layer already exists build 17-Aug-2019 20:21:02 b8558f2a0b6f: Layer already exists build 17-Aug-2019 20:21:03 796d512eb240: Layer already exists build 17-Aug-2019 20:21:03 1c090297c37c: Layer already exists build 17-Aug-2019 20:21:03 f2297bdfc824: Layer already exists build 17-Aug-2019 20:21:03 59669fcdd5eb: Layer already exists build 17-Aug-2019 20:21:03 0fbe2bcb1bf9: Layer already exists build 17-Aug-2019 20:21:03 7f7a065d245a: Layer already exists build 17-Aug-2019 20:21:03 f96e6b25195f: Layer already exists build 17-Aug-2019 20:21:03 c56153825175: Layer already exists build 17-Aug-2019 20:21:03 a2022691bf95: Layer already exists build 17-Aug-2019 20:21:03 ae620432889d: Layer already exists build 17-Aug-2019 20:21:03 browndog_v0.3.0: digest: sha256:3c0f413530aae2c6974c55cc6b96ad409760a9055c41109d60ffc1910d440b53 size: 3031 build 17-Aug-2019 20:21:04 The push refers to repository [docker.io/clowder/extractors-msc-chemcbc] build 17-Aug-2019 20:21:04 1c090297c37c: Preparing build 17-Aug-2019 20:21:04 654c8e3bc7f1: Preparing build 17-Aug-2019 20:21:04 796d512eb240: Preparing build 17-Aug-2019 20:21:04 b8558f2a0b6f: Preparing build 17-Aug-2019 20:21:04 0cdb02ac1d86: Preparing build 17-Aug-2019 20:21:04 f2297bdfc824: Preparing build 17-Aug-2019 20:21:04 0fbe2bcb1bf9: Preparing build 17-Aug-2019 20:21:04 59669fcdd5eb: Preparing build 17-Aug-2019 20:21:04 7f7a065d245a: Preparing build 17-Aug-2019 20:21:04 f96e6b25195f: Preparing build 17-Aug-2019 20:21:04 c56153825175: Preparing build 17-Aug-2019 20:21:04 ae620432889d: Preparing build 17-Aug-2019 20:21:04 a2022691bf95: Preparing build 17-Aug-2019 20:21:04 59669fcdd5eb: Waiting build 17-Aug-2019 20:21:04 7f7a065d245a: Waiting build 17-Aug-2019 20:21:04 f96e6b25195f: Waiting build 17-Aug-2019 20:21:04 c56153825175: Waiting build 17-Aug-2019 20:21:04 ae620432889d: Waiting build 17-Aug-2019 20:21:04 a2022691bf95: Waiting build 17-Aug-2019 20:21:04 f2297bdfc824: Waiting build 17-Aug-2019 20:21:04 0fbe2bcb1bf9: Waiting build 17-Aug-2019 20:21:04 796d512eb240: Layer already exists build 17-Aug-2019 20:21:04 654c8e3bc7f1: Layer already exists build 17-Aug-2019 20:21:04 1c090297c37c: Layer already exists build 17-Aug-2019 20:21:04 b8558f2a0b6f: Layer already exists build 17-Aug-2019 20:21:04 0cdb02ac1d86: Layer already exists build 17-Aug-2019 20:21:04 59669fcdd5eb: Layer already exists build 17-Aug-2019 20:21:04 0fbe2bcb1bf9: Layer already exists build 17-Aug-2019 20:21:04 f2297bdfc824: Layer already exists build 17-Aug-2019 20:21:04 7f7a065d245a: Layer already exists build 17-Aug-2019 20:21:04 f96e6b25195f: Layer already exists build 17-Aug-2019 20:21:04 c56153825175: Layer already exists build 17-Aug-2019 20:21:04 ae620432889d: Layer already exists build 17-Aug-2019 20:21:05 a2022691bf95: Layer already exists build 17-Aug-2019 20:21:05 latest: digest: sha256:3c0f413530aae2c6974c55cc6b96ad409760a9055c41109d60ffc1910d440b53 size: 3031 build 17-Aug-2019 20:21:05 Untagged: 5903:latest build 17-Aug-2019 20:21:05 Sending build context to Docker daemon 198.1kB build 17-Aug-2019 20:21:05 build 17-Aug-2019 20:21:05 Step 1/11 : FROM clowder/pyclowder:1 build 17-Aug-2019 20:21:05 ---> d1a9e970ed30 build 17-Aug-2019 20:21:05 Step 2/11 : MAINTAINER Yan Zhao build 17-Aug-2019 20:21:05 ---> Using cache build 17-Aug-2019 20:21:05 ---> 46f6d1fdf076 build 17-Aug-2019 20:21:05 Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.MonitorExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Monitor.py" build 17-Aug-2019 20:21:05 ---> Running in 83f1181c0307 build 17-Aug-2019 20:21:06 Removing intermediate container 83f1181c0307 build 17-Aug-2019 20:21:06 ---> 4a22d5bfe6c8 build 17-Aug-2019 20:21:06 Step 4/11 : USER root build 17-Aug-2019 20:21:06 ---> Running in 24f3218652a4 build 17-Aug-2019 20:21:06 Removing intermediate container 24f3218652a4 build 17-Aug-2019 20:21:06 ---> f9d027cb844d build 17-Aug-2019 20:21:06 Step 5/11 : COPY requirements.txt /home/clowder/ build 17-Aug-2019 20:21:07 ---> 5fc609d2b96d build 17-Aug-2019 20:21:07 Step 6/11 : RUN pip install --upgrade pip build 17-Aug-2019 20:21:08 ---> Running in 201f014c871c build 17-Aug-2019 20:21:10 Collecting pip build 17-Aug-2019 20:21:10 Downloading https://files.pythonhosted.org/packages/8d/07/f7d7ced2f97ca3098c16565efbe6b15fafcba53e8d9bdb431e09140514b0/pip-19.2.2-py2.py3-none-any.whl (1.4MB) build 17-Aug-2019 20:21:10 Installing collected packages: pip build 17-Aug-2019 20:21:10 Found existing installation: pip 8.1.1 build 17-Aug-2019 20:21:10 Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr build 17-Aug-2019 20:21:11 Successfully installed pip-19.2.2 build 17-Aug-2019 20:21:13 Removing intermediate container 201f014c871c build 17-Aug-2019 20:21:13 ---> 61efa874323c build 17-Aug-2019 20:21:13 Step 7/11 : RUN pip install -r /home/clowder/requirements.txt build 17-Aug-2019 20:21:13 ---> Running in 29c902e849ca build 17-Aug-2019 20:21:15 DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support build 17-Aug-2019 20:21:15 Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) build 17-Aug-2019 20:21:15 Collecting openpyxl==1.6.2 (from -r /home/clowder/requirements.txt (line 2)) build 17-Aug-2019 20:21:15 Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) build 17-Aug-2019 20:21:15 Collecting pika==0.9.14 (from -r /home/clowder/requirements.txt (line 3)) build 17-Aug-2019 20:21:15 Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) build 17-Aug-2019 20:21:15 Collecting pymongo==3.2.1 (from -r /home/clowder/requirements.txt (line 4)) build 17-Aug-2019 20:21:16 Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) build 17-Aug-2019 20:21:16 Collecting pytz==2014.3 (from -r /home/clowder/requirements.txt (line 5)) build 17-Aug-2019 20:21:17 Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) build 17-Aug-2019 20:21:17 Collecting requests==2.2.1 (from -r /home/clowder/requirements.txt (line 6)) build 17-Aug-2019 20:21:17 Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) build 17-Aug-2019 20:21:17 Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) build 17-Aug-2019 20:21:17 Collecting xlrd==0.9.3 (from -r /home/clowder/requirements.txt (line 8)) build 17-Aug-2019 20:21:17 Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) build 17-Aug-2019 20:21:18 Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd build 17-Aug-2019 20:21:18 Running setup.py install for openpyxl: started build 17-Aug-2019 20:21:18 Running setup.py install for openpyxl: finished with status 'done' build 17-Aug-2019 20:21:18 Found existing installation: pika 0.11.0 build 17-Aug-2019 20:21:18 Uninstalling pika-0.11.0: build 17-Aug-2019 20:21:18 Successfully uninstalled pika-0.11.0 build 17-Aug-2019 20:21:18 Running setup.py install for pika: started build 17-Aug-2019 20:21:18 Running setup.py install for pika: finished with status 'done' build 17-Aug-2019 20:21:18 Running setup.py install for pymongo: started build 17-Aug-2019 20:21:19 Running setup.py install for pymongo: finished with status 'done' build 17-Aug-2019 20:21:19 Running setup.py install for pytz: started build 17-Aug-2019 20:21:19 Running setup.py install for pytz: finished with status 'done' build 17-Aug-2019 20:21:19 Found existing installation: requests 2.18.4 build 17-Aug-2019 20:21:19 Uninstalling requests-2.18.4: build 17-Aug-2019 20:21:19 Successfully uninstalled requests-2.18.4 build 17-Aug-2019 20:21:20 Running setup.py install for xlrd: started build 17-Aug-2019 20:21:20 Running setup.py install for xlrd: finished with status 'done' build 17-Aug-2019 20:21:20 Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 build 17-Aug-2019 20:21:21 Removing intermediate container 29c902e849ca build 17-Aug-2019 20:21:21 ---> 2930d34bd461 build 17-Aug-2019 20:21:21 Step 8/11 : USER clowder build 17-Aug-2019 20:21:22 ---> Running in a6b1f380c334 build 17-Aug-2019 20:21:23 Removing intermediate container a6b1f380c334 build 17-Aug-2019 20:21:23 ---> 9eebc2194b25 build 17-Aug-2019 20:21:23 Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ build 17-Aug-2019 20:21:24 ---> a05a484be24d build 17-Aug-2019 20:21:24 Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 17-Aug-2019 20:21:24 ---> Running in 15f144599bbb build 17-Aug-2019 20:21:24 Removing intermediate container 15f144599bbb build 17-Aug-2019 20:21:24 ---> aaf0de8444ed build 17-Aug-2019 20:21:24 Step 11/11 : CMD ["extractor"] build 17-Aug-2019 20:21:24 ---> Running in 2028900bdc16 build 17-Aug-2019 20:21:25 Removing intermediate container 2028900bdc16 build 17-Aug-2019 20:21:25 ---> d8cb999f0f94 build 17-Aug-2019 20:21:25 Successfully built d8cb999f0f94 build 17-Aug-2019 20:21:25 Successfully tagged 5903:latest build 17-Aug-2019 20:21:25 The push refers to repository [docker.io/clowder/extractors-msc-monitor] build 17-Aug-2019 20:21:25 77a9f3189e94: Preparing build 17-Aug-2019 20:21:25 2889adc23b49: Preparing build 17-Aug-2019 20:21:25 e60a00ae94f1: Preparing build 17-Aug-2019 20:21:25 ae296cdea338: Preparing build 17-Aug-2019 20:21:25 0cdb02ac1d86: Preparing build 17-Aug-2019 20:21:25 f2297bdfc824: Preparing build 17-Aug-2019 20:21:25 0fbe2bcb1bf9: Preparing build 17-Aug-2019 20:21:25 59669fcdd5eb: Preparing build 17-Aug-2019 20:21:25 7f7a065d245a: Preparing build 17-Aug-2019 20:21:25 f96e6b25195f: Preparing build 17-Aug-2019 20:21:25 c56153825175: Preparing build 17-Aug-2019 20:21:25 ae620432889d: Preparing build 17-Aug-2019 20:21:25 a2022691bf95: Preparing build 17-Aug-2019 20:21:25 f2297bdfc824: Waiting build 17-Aug-2019 20:21:25 0fbe2bcb1bf9: Waiting build 17-Aug-2019 20:21:25 59669fcdd5eb: Waiting build 17-Aug-2019 20:21:25 7f7a065d245a: Waiting build 17-Aug-2019 20:21:25 f96e6b25195f: Waiting build 17-Aug-2019 20:21:25 c56153825175: Waiting build 17-Aug-2019 20:21:25 ae620432889d: Waiting build 17-Aug-2019 20:21:25 a2022691bf95: Waiting build 17-Aug-2019 20:21:26 0cdb02ac1d86: Layer already exists build 17-Aug-2019 20:21:26 f2297bdfc824: Layer already exists build 17-Aug-2019 20:21:26 0fbe2bcb1bf9: Layer already exists build 17-Aug-2019 20:21:26 59669fcdd5eb: Layer already exists build 17-Aug-2019 20:21:26 7f7a065d245a: Layer already exists build 17-Aug-2019 20:21:27 ae296cdea338: Pushed build 17-Aug-2019 20:21:27 f96e6b25195f: Layer already exists build 17-Aug-2019 20:21:27 77a9f3189e94: Pushed build 17-Aug-2019 20:21:27 c56153825175: Layer already exists build 17-Aug-2019 20:21:27 ae620432889d: Layer already exists build 17-Aug-2019 20:21:27 a2022691bf95: Layer already exists build 17-Aug-2019 20:21:28 2889adc23b49: Pushed build 17-Aug-2019 20:21:28 e60a00ae94f1: Pushed build 17-Aug-2019 20:21:30 browndog_v0.2.0: digest: sha256:04c8eb77fee9504f2483ea88cf0f852070113741ca933bf855dc66fe69d6a186 size: 3031 build 17-Aug-2019 20:21:30 The push refers to repository [docker.io/clowder/extractors-msc-monitor] build 17-Aug-2019 20:21:30 77a9f3189e94: Preparing build 17-Aug-2019 20:21:30 2889adc23b49: Preparing build 17-Aug-2019 20:21:30 e60a00ae94f1: Preparing build 17-Aug-2019 20:21:30 ae296cdea338: Preparing build 17-Aug-2019 20:21:30 0cdb02ac1d86: Preparing build 17-Aug-2019 20:21:30 f2297bdfc824: Preparing build 17-Aug-2019 20:21:30 0fbe2bcb1bf9: Preparing build 17-Aug-2019 20:21:30 59669fcdd5eb: Preparing build 17-Aug-2019 20:21:30 7f7a065d245a: Preparing build 17-Aug-2019 20:21:30 f96e6b25195f: Preparing build 17-Aug-2019 20:21:30 c56153825175: Preparing build 17-Aug-2019 20:21:30 ae620432889d: Preparing build 17-Aug-2019 20:21:30 a2022691bf95: Preparing build 17-Aug-2019 20:21:30 f2297bdfc824: Waiting build 17-Aug-2019 20:21:30 c56153825175: Waiting build 17-Aug-2019 20:21:30 0fbe2bcb1bf9: Waiting build 17-Aug-2019 20:21:30 ae620432889d: Waiting build 17-Aug-2019 20:21:30 59669fcdd5eb: Waiting build 17-Aug-2019 20:21:30 a2022691bf95: Waiting build 17-Aug-2019 20:21:30 f96e6b25195f: Waiting build 17-Aug-2019 20:21:30 7f7a065d245a: Waiting build 17-Aug-2019 20:21:31 2889adc23b49: Layer already exists build 17-Aug-2019 20:21:31 e60a00ae94f1: Layer already exists build 17-Aug-2019 20:21:31 0cdb02ac1d86: Layer already exists build 17-Aug-2019 20:21:31 77a9f3189e94: Layer already exists build 17-Aug-2019 20:21:31 ae296cdea338: Layer already exists build 17-Aug-2019 20:21:31 f2297bdfc824: Layer already exists build 17-Aug-2019 20:21:31 59669fcdd5eb: Layer already exists build 17-Aug-2019 20:21:31 0fbe2bcb1bf9: Layer already exists build 17-Aug-2019 20:21:31 f96e6b25195f: Layer already exists build 17-Aug-2019 20:21:31 7f7a065d245a: Layer already exists build 17-Aug-2019 20:21:31 c56153825175: Layer already exists build 17-Aug-2019 20:21:31 ae620432889d: Layer already exists build 17-Aug-2019 20:21:31 a2022691bf95: Layer already exists build 17-Aug-2019 20:21:32 browndog_v0.3.0: digest: sha256:04c8eb77fee9504f2483ea88cf0f852070113741ca933bf855dc66fe69d6a186 size: 3031 build 17-Aug-2019 20:21:32 The push refers to repository [docker.io/clowder/extractors-msc-monitor] build 17-Aug-2019 20:21:32 77a9f3189e94: Preparing build 17-Aug-2019 20:21:32 2889adc23b49: Preparing build 17-Aug-2019 20:21:32 e60a00ae94f1: Preparing build 17-Aug-2019 20:21:32 ae296cdea338: Preparing build 17-Aug-2019 20:21:32 0cdb02ac1d86: Preparing build 17-Aug-2019 20:21:32 f2297bdfc824: Preparing build 17-Aug-2019 20:21:32 0fbe2bcb1bf9: Preparing build 17-Aug-2019 20:21:32 59669fcdd5eb: Preparing build 17-Aug-2019 20:21:32 7f7a065d245a: Preparing build 17-Aug-2019 20:21:32 f96e6b25195f: Preparing build 17-Aug-2019 20:21:32 c56153825175: Preparing build 17-Aug-2019 20:21:32 ae620432889d: Preparing build 17-Aug-2019 20:21:32 a2022691bf95: Preparing build 17-Aug-2019 20:21:32 7f7a065d245a: Waiting build 17-Aug-2019 20:21:32 f96e6b25195f: Waiting build 17-Aug-2019 20:21:32 c56153825175: Waiting build 17-Aug-2019 20:21:32 ae620432889d: Waiting build 17-Aug-2019 20:21:32 a2022691bf95: Waiting build 17-Aug-2019 20:21:32 f2297bdfc824: Waiting build 17-Aug-2019 20:21:32 0fbe2bcb1bf9: Waiting build 17-Aug-2019 20:21:32 59669fcdd5eb: Waiting build 17-Aug-2019 20:21:33 77a9f3189e94: Layer already exists build 17-Aug-2019 20:21:33 ae296cdea338: Layer already exists build 17-Aug-2019 20:21:33 0cdb02ac1d86: Layer already exists build 17-Aug-2019 20:21:33 2889adc23b49: Layer already exists build 17-Aug-2019 20:21:33 e60a00ae94f1: Layer already exists build 17-Aug-2019 20:21:33 59669fcdd5eb: Layer already exists build 17-Aug-2019 20:21:33 f96e6b25195f: Layer already exists build 17-Aug-2019 20:21:33 0fbe2bcb1bf9: Layer already exists build 17-Aug-2019 20:21:33 f2297bdfc824: Layer already exists build 17-Aug-2019 20:21:33 7f7a065d245a: Layer already exists build 17-Aug-2019 20:21:33 c56153825175: Layer already exists build 17-Aug-2019 20:21:33 ae620432889d: Layer already exists build 17-Aug-2019 20:21:33 a2022691bf95: Layer already exists build 17-Aug-2019 20:21:34 latest: digest: sha256:04c8eb77fee9504f2483ea88cf0f852070113741ca933bf855dc66fe69d6a186 size: 3031 build 17-Aug-2019 20:21:34 Untagged: 5903:latest build 17-Aug-2019 20:21:34 Sending build context to Docker daemon 12.1MB build 17-Aug-2019 20:21:34 build 17-Aug-2019 20:21:34 Step 1/11 : FROM clowder/pyclowder:1 build 17-Aug-2019 20:21:34 ---> d1a9e970ed30 build 17-Aug-2019 20:21:34 Step 2/11 : MAINTAINER Yan Zhao build 17-Aug-2019 20:21:34 ---> Using cache build 17-Aug-2019 20:21:34 ---> 46f6d1fdf076 build 17-Aug-2019 20:21:34 Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.PhenotypeExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Phenotype.py" build 17-Aug-2019 20:21:34 ---> Running in 0ada6c9aa74f build 17-Aug-2019 20:21:35 Removing intermediate container 0ada6c9aa74f build 17-Aug-2019 20:21:35 ---> f6ceb84b37bf build 17-Aug-2019 20:21:35 Step 4/11 : USER root build 17-Aug-2019 20:21:35 ---> Running in 326d062a2d6a build 17-Aug-2019 20:21:35 Removing intermediate container 326d062a2d6a build 17-Aug-2019 20:21:35 ---> c0109ad8ecf8 build 17-Aug-2019 20:21:35 Step 5/11 : COPY requirements.txt /home/clowder/ build 17-Aug-2019 20:21:35 ---> d2af425a8c36 build 17-Aug-2019 20:21:35 Step 6/11 : RUN pip install --upgrade pip build 17-Aug-2019 20:21:36 ---> Running in 920ff5016ecd build 17-Aug-2019 20:21:37 Collecting pip build 17-Aug-2019 20:21:38 Downloading https://files.pythonhosted.org/packages/8d/07/f7d7ced2f97ca3098c16565efbe6b15fafcba53e8d9bdb431e09140514b0/pip-19.2.2-py2.py3-none-any.whl (1.4MB) build 17-Aug-2019 20:21:38 Installing collected packages: pip build 17-Aug-2019 20:21:38 Found existing installation: pip 8.1.1 build 17-Aug-2019 20:21:38 Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr build 17-Aug-2019 20:21:39 Successfully installed pip-19.2.2 build 17-Aug-2019 20:21:40 Removing intermediate container 920ff5016ecd build 17-Aug-2019 20:21:40 ---> 4240500ecb9c build 17-Aug-2019 20:21:40 Step 7/11 : RUN pip install -r /home/clowder/requirements.txt build 17-Aug-2019 20:21:40 ---> Running in 30745a23ac35 build 17-Aug-2019 20:21:41 DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support build 17-Aug-2019 20:21:41 Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) build 17-Aug-2019 20:21:41 Collecting openpyxl==1.6.2 (from -r /home/clowder/requirements.txt (line 2)) build 17-Aug-2019 20:21:41 Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) build 17-Aug-2019 20:21:42 Collecting pika==0.9.14 (from -r /home/clowder/requirements.txt (line 3)) build 17-Aug-2019 20:21:42 Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) build 17-Aug-2019 20:21:42 Collecting pymongo==3.2.1 (from -r /home/clowder/requirements.txt (line 4)) build 17-Aug-2019 20:21:43 Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) build 17-Aug-2019 20:21:43 Collecting pytz==2014.3 (from -r /home/clowder/requirements.txt (line 5)) build 17-Aug-2019 20:21:43 Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) build 17-Aug-2019 20:21:44 Collecting requests==2.2.1 (from -r /home/clowder/requirements.txt (line 6)) build 17-Aug-2019 20:21:44 Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) build 17-Aug-2019 20:21:44 Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) build 17-Aug-2019 20:21:44 Collecting xlrd==0.9.3 (from -r /home/clowder/requirements.txt (line 8)) build 17-Aug-2019 20:21:44 Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) build 17-Aug-2019 20:21:44 Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd build 17-Aug-2019 20:21:44 Running setup.py install for openpyxl: started build 17-Aug-2019 20:21:45 Running setup.py install for openpyxl: finished with status 'done' build 17-Aug-2019 20:21:45 Found existing installation: pika 0.11.0 build 17-Aug-2019 20:21:45 Uninstalling pika-0.11.0: build 17-Aug-2019 20:21:45 Successfully uninstalled pika-0.11.0 build 17-Aug-2019 20:21:45 Running setup.py install for pika: started build 17-Aug-2019 20:21:45 Running setup.py install for pika: finished with status 'done' build 17-Aug-2019 20:21:45 Running setup.py install for pymongo: started build 17-Aug-2019 20:21:45 Running setup.py install for pymongo: finished with status 'done' build 17-Aug-2019 20:21:45 Running setup.py install for pytz: started build 17-Aug-2019 20:21:46 Running setup.py install for pytz: finished with status 'done' build 17-Aug-2019 20:21:46 Found existing installation: requests 2.18.4 build 17-Aug-2019 20:21:46 Uninstalling requests-2.18.4: build 17-Aug-2019 20:21:46 Successfully uninstalled requests-2.18.4 build 17-Aug-2019 20:21:46 Running setup.py install for xlrd: started build 17-Aug-2019 20:21:47 Running setup.py install for xlrd: finished with status 'done' build 17-Aug-2019 20:21:47 Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 build 17-Aug-2019 20:21:49 Removing intermediate container 30745a23ac35 build 17-Aug-2019 20:21:49 ---> 1797dde8f847 build 17-Aug-2019 20:21:49 Step 8/11 : USER clowder build 17-Aug-2019 20:21:49 ---> Running in 19deddab843e build 17-Aug-2019 20:21:49 Removing intermediate container 19deddab843e build 17-Aug-2019 20:21:49 ---> c193e004c918 build 17-Aug-2019 20:21:49 Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ build 17-Aug-2019 20:21:51 ---> a6a9b3729b73 build 17-Aug-2019 20:21:51 Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 17-Aug-2019 20:21:51 ---> Running in 7b16d43a738a build 17-Aug-2019 20:21:52 Removing intermediate container 7b16d43a738a build 17-Aug-2019 20:21:52 ---> fe8b5bf4a7c9 build 17-Aug-2019 20:21:52 Step 11/11 : CMD ["extractor"] build 17-Aug-2019 20:21:52 ---> Running in 8d40e84f64b6 build 17-Aug-2019 20:21:53 Removing intermediate container 8d40e84f64b6 build 17-Aug-2019 20:21:53 ---> eec26e3fc5b7 build 17-Aug-2019 20:21:53 Successfully built eec26e3fc5b7 build 17-Aug-2019 20:21:53 Successfully tagged 5903:latest build 17-Aug-2019 20:21:53 The push refers to repository [docker.io/clowder/extractors-msc-phenotype] build 17-Aug-2019 20:21:53 8bec6f89fe17: Preparing build 17-Aug-2019 20:21:53 84f606e1b641: Preparing build 17-Aug-2019 20:21:53 2b533ea8819b: Preparing build 17-Aug-2019 20:21:53 70d7547e4efd: Preparing build 17-Aug-2019 20:21:53 0cdb02ac1d86: Preparing build 17-Aug-2019 20:21:53 f2297bdfc824: Preparing build 17-Aug-2019 20:21:53 0fbe2bcb1bf9: Preparing build 17-Aug-2019 20:21:53 59669fcdd5eb: Preparing build 17-Aug-2019 20:21:53 7f7a065d245a: Preparing build 17-Aug-2019 20:21:53 f96e6b25195f: Preparing build 17-Aug-2019 20:21:53 c56153825175: Preparing build 17-Aug-2019 20:21:53 ae620432889d: Preparing build 17-Aug-2019 20:21:53 a2022691bf95: Preparing build 17-Aug-2019 20:21:53 59669fcdd5eb: Waiting build 17-Aug-2019 20:21:53 7f7a065d245a: Waiting build 17-Aug-2019 20:21:53 f96e6b25195f: Waiting build 17-Aug-2019 20:21:53 c56153825175: Waiting build 17-Aug-2019 20:21:53 ae620432889d: Waiting build 17-Aug-2019 20:21:53 a2022691bf95: Waiting build 17-Aug-2019 20:21:53 f2297bdfc824: Waiting build 17-Aug-2019 20:21:53 0fbe2bcb1bf9: Waiting build 17-Aug-2019 20:21:54 0cdb02ac1d86: Layer already exists build 17-Aug-2019 20:21:54 f2297bdfc824: Layer already exists build 17-Aug-2019 20:21:54 0fbe2bcb1bf9: Layer already exists build 17-Aug-2019 20:21:54 59669fcdd5eb: Layer already exists build 17-Aug-2019 20:21:55 7f7a065d245a: Layer already exists build 17-Aug-2019 20:21:55 8bec6f89fe17: Pushed build 17-Aug-2019 20:21:55 f96e6b25195f: Layer already exists build 17-Aug-2019 20:21:55 70d7547e4efd: Pushed build 17-Aug-2019 20:21:55 ae620432889d: Layer already exists build 17-Aug-2019 20:21:55 c56153825175: Layer already exists build 17-Aug-2019 20:21:55 a2022691bf95: Layer already exists build 17-Aug-2019 20:21:56 84f606e1b641: Pushed build 17-Aug-2019 20:21:56 2b533ea8819b: Pushed build 17-Aug-2019 20:21:59 browndog_v0.2.0: digest: sha256:062091ca4c1cd318f2c45de8439012781be496c5110a07abc234f53097a293fc size: 3031 build 17-Aug-2019 20:21:59 The push refers to repository [docker.io/clowder/extractors-msc-phenotype] build 17-Aug-2019 20:21:59 8bec6f89fe17: Preparing build 17-Aug-2019 20:21:59 84f606e1b641: Preparing build 17-Aug-2019 20:21:59 2b533ea8819b: Preparing build 17-Aug-2019 20:21:59 70d7547e4efd: Preparing build 17-Aug-2019 20:21:59 0cdb02ac1d86: Preparing build 17-Aug-2019 20:21:59 f2297bdfc824: Preparing build 17-Aug-2019 20:21:59 0fbe2bcb1bf9: Preparing build 17-Aug-2019 20:21:59 59669fcdd5eb: Preparing build 17-Aug-2019 20:21:59 7f7a065d245a: Preparing build 17-Aug-2019 20:21:59 f96e6b25195f: Preparing build 17-Aug-2019 20:21:59 c56153825175: Preparing build 17-Aug-2019 20:21:59 ae620432889d: Preparing build 17-Aug-2019 20:21:59 a2022691bf95: Preparing build 17-Aug-2019 20:21:59 59669fcdd5eb: Waiting build 17-Aug-2019 20:21:59 0fbe2bcb1bf9: Waiting build 17-Aug-2019 20:21:59 7f7a065d245a: Waiting build 17-Aug-2019 20:21:59 f96e6b25195f: Waiting build 17-Aug-2019 20:21:59 ae620432889d: Waiting build 17-Aug-2019 20:21:59 c56153825175: Waiting build 17-Aug-2019 20:21:59 a2022691bf95: Waiting build 17-Aug-2019 20:21:59 84f606e1b641: Layer already exists build 17-Aug-2019 20:21:59 2b533ea8819b: Layer already exists build 17-Aug-2019 20:21:59 70d7547e4efd: Layer already exists build 17-Aug-2019 20:21:59 8bec6f89fe17: Layer already exists build 17-Aug-2019 20:21:59 0cdb02ac1d86: Layer already exists build 17-Aug-2019 20:21:59 f2297bdfc824: Layer already exists build 17-Aug-2019 20:21:59 7f7a065d245a: Layer already exists build 17-Aug-2019 20:21:59 59669fcdd5eb: Layer already exists build 17-Aug-2019 20:21:59 0fbe2bcb1bf9: Layer already exists build 17-Aug-2019 20:22:00 f96e6b25195f: Layer already exists build 17-Aug-2019 20:22:00 c56153825175: Layer already exists build 17-Aug-2019 20:22:00 ae620432889d: Layer already exists build 17-Aug-2019 20:22:00 a2022691bf95: Layer already exists build 17-Aug-2019 20:22:00 browndog_v0.3.0: digest: sha256:062091ca4c1cd318f2c45de8439012781be496c5110a07abc234f53097a293fc size: 3031 build 17-Aug-2019 20:22:01 The push refers to repository [docker.io/clowder/extractors-msc-phenotype] build 17-Aug-2019 20:22:01 8bec6f89fe17: Preparing build 17-Aug-2019 20:22:01 84f606e1b641: Preparing build 17-Aug-2019 20:22:01 2b533ea8819b: Preparing build 17-Aug-2019 20:22:01 70d7547e4efd: Preparing build 17-Aug-2019 20:22:01 0cdb02ac1d86: Preparing build 17-Aug-2019 20:22:01 f2297bdfc824: Preparing build 17-Aug-2019 20:22:01 0fbe2bcb1bf9: Preparing build 17-Aug-2019 20:22:01 59669fcdd5eb: Preparing build 17-Aug-2019 20:22:01 7f7a065d245a: Preparing build 17-Aug-2019 20:22:01 f96e6b25195f: Preparing build 17-Aug-2019 20:22:01 c56153825175: Preparing build 17-Aug-2019 20:22:01 ae620432889d: Preparing build 17-Aug-2019 20:22:01 a2022691bf95: Preparing build 17-Aug-2019 20:22:01 f2297bdfc824: Waiting build 17-Aug-2019 20:22:01 0fbe2bcb1bf9: Waiting build 17-Aug-2019 20:22:01 59669fcdd5eb: Waiting build 17-Aug-2019 20:22:01 7f7a065d245a: Waiting build 17-Aug-2019 20:22:01 f96e6b25195f: Waiting build 17-Aug-2019 20:22:01 c56153825175: Waiting build 17-Aug-2019 20:22:01 ae620432889d: Waiting build 17-Aug-2019 20:22:01 a2022691bf95: Waiting build 17-Aug-2019 20:22:01 2b533ea8819b: Layer already exists build 17-Aug-2019 20:22:01 8bec6f89fe17: Layer already exists build 17-Aug-2019 20:22:01 70d7547e4efd: Layer already exists build 17-Aug-2019 20:22:01 0cdb02ac1d86: Layer already exists build 17-Aug-2019 20:22:01 84f606e1b641: Layer already exists build 17-Aug-2019 20:22:01 f2297bdfc824: Layer already exists build 17-Aug-2019 20:22:01 7f7a065d245a: Layer already exists build 17-Aug-2019 20:22:02 f96e6b25195f: Layer already exists build 17-Aug-2019 20:22:02 59669fcdd5eb: Layer already exists build 17-Aug-2019 20:22:02 0fbe2bcb1bf9: Layer already exists build 17-Aug-2019 20:22:02 c56153825175: Layer already exists build 17-Aug-2019 20:22:02 ae620432889d: Layer already exists build 17-Aug-2019 20:22:02 a2022691bf95: Layer already exists build 17-Aug-2019 20:22:02 latest: digest: sha256:062091ca4c1cd318f2c45de8439012781be496c5110a07abc234f53097a293fc size: 3031 build 17-Aug-2019 20:22:02 Untagged: 5903:latest simple 17-Aug-2019 20:22:02 Finished task 'docker build' with result: Success simple 17-Aug-2019 20:22:02 Running post build plugin 'Docker Container Cleanup' simple 17-Aug-2019 20:22:02 Running post build plugin 'NCover Results Collector' simple 17-Aug-2019 20:22:02 Running post build plugin 'Clover Results Collector' simple 17-Aug-2019 20:22:02 Running post build plugin 'npm Cache Cleanup' simple 17-Aug-2019 20:22:02 Running post build plugin 'Artifact Copier' simple 17-Aug-2019 20:22:02 Finalising the build... simple 17-Aug-2019 20:22:02 Stopping timer. simple 17-Aug-2019 20:22:02 Build CATS-MSC-JOB1-40 completed. simple 17-Aug-2019 20:22:02 Running on server: post build plugin 'NCover Results Collector' simple 17-Aug-2019 20:22:02 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 17-Aug-2019 20:22:02 Running on server: post build plugin 'Clover Delta Calculator' simple 17-Aug-2019 20:22:02 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 17-Aug-2019 20:22:02 All post build plugins have finished simple 17-Aug-2019 20:22:02 Generating build results summary... simple 17-Aug-2019 20:22:02 Saving build results to disk... simple 17-Aug-2019 20:22:02 Logging substituted variables... simple 17-Aug-2019 20:22:02 Indexing build results... simple 17-Aug-2019 20:22:02 Finished building CATS-MSC-JOB1-40.