simple 30-Oct-2019 13:06:56 Build Clowder - extractors-msc - Default Job #43 (CATS-MSC-JOB1-43) started building on agent buildserver-3.os.ncsa.edu simple 30-Oct-2019 13:06:56 Remote agent on host buildserver-3.os.ncsa.edu simple 30-Oct-2019 13:06:56 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1 simple 30-Oct-2019 13:06:56 Executing build Clowder - extractors-msc - Default Job #43 (CATS-MSC-JOB1-43) simple 30-Oct-2019 13:06:56 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 30-Oct-2019 13:06:56 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1 simple 30-Oct-2019 13:06:56 Updating source code to revision: 6aaab3692bc88bb1c0016521723c45399615c5f2 simple 30-Oct-2019 13:06:56 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1/.git'. simple 30-Oct-2019 13:06:56 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1/.git/ simple 30-Oct-2019 13:06:57 Fetching 'refs/heads/master' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git'. Will try to do a shallow fetch. simple 30-Oct-2019 13:06:57 Warning: Permanently added '[127.0.0.1]:36965' (RSA) to the list of known hosts. simple 30-Oct-2019 13:07:02 From ssh://127.0.0.1:36965/cats/extractors-msc simple 30-Oct-2019 13:07:02 * [new branch] master -> master simple 30-Oct-2019 13:07:02 * [new tag] browndog_v0.2.0 -> browndog_v0.2.0 simple 30-Oct-2019 13:07:02 * [new tag] browndog_v0.3.0 -> browndog_v0.3.0 simple 30-Oct-2019 13:07:02 Checking out revision 6aaab3692bc88bb1c0016521723c45399615c5f2. simple 30-Oct-2019 13:07:02 Already on 'master' simple 30-Oct-2019 13:07:02 Updated source code to revision: 6aaab3692bc88bb1c0016521723c45399615c5f2 simple 30-Oct-2019 13:07:02 Finished task 'Checkout Default Repository' with result: Success simple 30-Oct-2019 13:07:02 Running pre-build action: VCS Version Collector simple 30-Oct-2019 13:07:02 Starting task 'docker build' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 30-Oct-2019 13:07:02 Beginning to execute external process for build 'Clowder - extractors-msc - Default Job #43 (CATS-MSC-JOB1-43)'\n ... running command line: \n/bin/sh docker.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=master\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster\nbamboo_dependency_parent_0=CATS-PYC2-77\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_dependency_parent_total=1\nbamboo_planRepository_1_branchDisplayName=master\nbamboo_repository_revision_number=6aaab3692bc88bb1c0016521723c45399615c5f2\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-MSC-JOB1-43\nbamboo_repository_127172627_branch_name=master\nbamboo_repository_127172627_git_branch=master\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1\nbamboo_planRepository_1_name=extractors-msc\nbamboo_buildKey=CATS-MSC-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=extractors-msc\nbamboo_planRepository_name=extractors-msc\nbamboo_repository_127172627_git_username=\nbamboo_buildNumber=43\nbamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-MSC-JOB1-43\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git\nbamboo_agentId=143032321\nbamboo_planName=Clowder - extractors-msc\nbamboo_repository_127172627_revision_number=6aaab3692bc88bb1c0016521723c45399615c5f2\nbamboo_shortPlanKey=MSC\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_shortJobKey=JOB1\nbamboo_planRepository_revision=6aaab3692bc88bb1c0016521723c45399615c5f2\nbamboo_buildTimeStamp=2019-10-30T12:26:10.209-05:00\nbamboo_repository_previous_revision_number=6aaab3692bc88bb1c0016521723c45399615c5f2\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_planRepository_previousRevision=6aaab3692bc88bb1c0016521723c45399615c5f2\nbamboo_repository_git_branch=master\nbamboo_buildResultKey=CATS-MSC-JOB1-43\nbamboo_repository_branch_name=master\nbamboo_buildPlanName=Clowder - extractors-msc - Default Job\nbamboo_planRepository_1_revision=6aaab3692bc88bb1c0016521723c45399615c5f2\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=extractors-msc\nbamboo_buildFailed=false\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_branch=master\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=6aaab3692bc88bb1c0016521723c45399615c5f2\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_repository_127172627_name=extractors-msc\nbamboo_planRepository_branchDisplayName=master\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=master\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-126976035\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git\nbamboo_repository_127172627_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC-JOB1\nbamboo_planKey=CATS-MSC\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_repository_127172627_previous_revision_number=6aaab3692bc88bb1c0016521723c45399615c5f2\nbamboo_planRepository_1_branchName=master\n build 30-Oct-2019 13:07:02 Sending build context to Docker daemon 2.284MB build 30-Oct-2019 13:07:02 build 30-Oct-2019 13:07:02 Step 1/11 : FROM clowder/pyclowder:1 build 30-Oct-2019 13:07:02 ---> d1a9e970ed30 build 30-Oct-2019 13:07:02 Step 2/11 : MAINTAINER Rob Kooper build 30-Oct-2019 13:07:03 ---> Running in 844762c5e03e build 30-Oct-2019 13:07:03 Removing intermediate container 844762c5e03e build 30-Oct-2019 13:07:03 ---> 8cf42f9dae40 build 30-Oct-2019 13:07:03 Step 3/11 : VOLUME /matlab build 30-Oct-2019 13:07:04 ---> Running in 328c16f3a5ea build 30-Oct-2019 13:07:04 Removing intermediate container 328c16f3a5ea build 30-Oct-2019 13:07:04 ---> 23da094f58ba build 30-Oct-2019 13:07:04 Step 4/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.diagnosis" MATLAB_BINARY="/matlab/bin/matlab" MAIN_SCRIPT="diagnosis.py" build 30-Oct-2019 13:07:04 ---> Running in 2adda246dff5 build 30-Oct-2019 13:07:05 Removing intermediate container 2adda246dff5 build 30-Oct-2019 13:07:05 ---> b706d051997e build 30-Oct-2019 13:07:05 Step 5/11 : USER root build 30-Oct-2019 13:07:05 ---> Running in e315b26236b6 build 30-Oct-2019 13:07:06 Removing intermediate container e315b26236b6 build 30-Oct-2019 13:07:06 ---> 8e1ce2fb4b85 build 30-Oct-2019 13:07:06 Step 6/11 : RUN pip install --upgrade pip build 30-Oct-2019 13:07:07 ---> Running in f68fbd90c04b build 30-Oct-2019 13:07:09 Collecting pip build 30-Oct-2019 13:07:09 Downloading https://files.pythonhosted.org/packages/00/b6/9cfa56b4081ad13874b0c6f96af8ce16cfbc1cb06bedf8e9164ce5551ec1/pip-19.3.1-py2.py3-none-any.whl (1.4MB) build 30-Oct-2019 13:07:09 Installing collected packages: pip build 30-Oct-2019 13:07:09 Found existing installation: pip 8.1.1 build 30-Oct-2019 13:07:09 Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr build 30-Oct-2019 13:07:10 Successfully installed pip-19.3.1 build 30-Oct-2019 13:07:13 Removing intermediate container f68fbd90c04b build 30-Oct-2019 13:07:13 ---> 5e6bbfd4b1bc build 30-Oct-2019 13:07:13 Step 7/11 : RUN apt-get -qq -y update && apt-get -y install libxext6 libxmu6 libxt6 wget && mkdir -p /matlab && rm -rf /var/lib/apt/lists/* build 30-Oct-2019 13:07:14 ---> Running in ebbd1971e9e1 build 30-Oct-2019 13:07:26 Reading package lists... build 30-Oct-2019 13:07:27 Building dependency tree... build 30-Oct-2019 13:07:27 Reading state information... build 30-Oct-2019 13:07:27 The following additional packages will be installed: build 30-Oct-2019 13:07:27 libice6 libidn11 libsm6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 build 30-Oct-2019 13:07:27 x11-common build 30-Oct-2019 13:07:27 The following NEW packages will be installed: build 30-Oct-2019 13:07:27 libice6 libidn11 libsm6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 build 30-Oct-2019 13:07:27 libxext6 libxmu6 libxt6 wget x11-common build 30-Oct-2019 13:07:27 0 upgraded, 13 newly installed, 0 to remove and 59 not upgraded. build 30-Oct-2019 13:07:27 Need to get 1402 kB of archives. build 30-Oct-2019 13:07:27 After this operation, 5597 kB of additional disk space will be used. build 30-Oct-2019 13:07:27 Get:1 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] build 30-Oct-2019 13:07:27 Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxdmcp6 amd64 1:1.1.2-1.1 [11.0 kB] build 30-Oct-2019 13:07:27 Get:3 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb1 amd64 1.11.1-1ubuntu1 [40.0 kB] build 30-Oct-2019 13:07:28 Get:4 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-data all 2:1.6.3-1ubuntu2.1 [113 kB] build 30-Oct-2019 13:07:28 Get:5 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-6 amd64 2:1.6.3-1ubuntu2.1 [570 kB] build 30-Oct-2019 13:07:29 Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB] build 30-Oct-2019 13:07:29 Get:7 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 x11-common all 1:7.7+13ubuntu3.1 [22.9 kB] build 30-Oct-2019 13:07:29 Get:8 http://archive.ubuntu.com/ubuntu xenial/main amd64 libice6 amd64 2:1.0.9-1 [39.2 kB] build 30-Oct-2019 13:07:30 Get:9 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB] build 30-Oct-2019 13:07:30 Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libidn11 amd64 1.32-3ubuntu1.2 [46.5 kB] build 30-Oct-2019 13:07:31 Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 wget amd64 1.17.1-1ubuntu1.5 [299 kB] build 30-Oct-2019 13:07:31 Get:12 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxt6 amd64 1:1.1.5-0ubuntu1 [160 kB] build 30-Oct-2019 13:07:32 Get:13 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxmu6 amd64 2:1.1.2-2 [46.0 kB] build 30-Oct-2019 13:07:32 debconf: delaying package configuration, since apt-utils is not installed build 30-Oct-2019 13:07:32 Fetched 1402 kB in 5s (265 kB/s) build 30-Oct-2019 13:07:33 Selecting previously unselected package libxau6:amd64. build 30-Oct-2019 13:07:33 (Reading database ... build 30-Oct-2019 13:07:33 (Reading database ... 5% build 30-Oct-2019 13:07:33 (Reading database ... 10% build 30-Oct-2019 13:07:33 (Reading database ... 15% build 30-Oct-2019 13:07:33 (Reading database ... 20% build 30-Oct-2019 13:07:33 (Reading database ... 25% build 30-Oct-2019 13:07:33 (Reading database ... 30% build 30-Oct-2019 13:07:33 (Reading database ... 35% build 30-Oct-2019 13:07:33 (Reading database ... 40% build 30-Oct-2019 13:07:33 (Reading database ... 45% build 30-Oct-2019 13:07:33 (Reading database ... 50% build 30-Oct-2019 13:07:33 (Reading database ... 55% build 30-Oct-2019 13:07:33 (Reading database ... 60% build 30-Oct-2019 13:07:33 (Reading database ... 65% build 30-Oct-2019 13:07:33 (Reading database ... 70% build 30-Oct-2019 13:07:33 (Reading database ... 75% build 30-Oct-2019 13:07:33 (Reading database ... 80% build 30-Oct-2019 13:07:33 (Reading database ... 85% build 30-Oct-2019 13:07:33 (Reading database ... 90% build 30-Oct-2019 13:07:33 (Reading database ... 95% build 30-Oct-2019 13:07:33 (Reading database ... 100% build 30-Oct-2019 13:07:33 (Reading database ... 6101 files and directories currently installed.) build 30-Oct-2019 13:07:33 Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... build 30-Oct-2019 13:07:33 Unpacking libxau6:amd64 (1:1.0.8-1) ... build 30-Oct-2019 13:07:33 Selecting previously unselected package libxdmcp6:amd64. build 30-Oct-2019 13:07:33 Preparing to unpack .../libxdmcp6_1%3a1.1.2-1.1_amd64.deb ... build 30-Oct-2019 13:07:33 Unpacking libxdmcp6:amd64 (1:1.1.2-1.1) ... build 30-Oct-2019 13:07:34 Selecting previously unselected package libxcb1:amd64. build 30-Oct-2019 13:07:34 Preparing to unpack .../libxcb1_1.11.1-1ubuntu1_amd64.deb ... build 30-Oct-2019 13:07:35 Unpacking libxcb1:amd64 (1.11.1-1ubuntu1) ... build 30-Oct-2019 13:07:35 Selecting previously unselected package libx11-data. build 30-Oct-2019 13:07:35 Preparing to unpack .../libx11-data_2%3a1.6.3-1ubuntu2.1_all.deb ... build 30-Oct-2019 13:07:36 Unpacking libx11-data (2:1.6.3-1ubuntu2.1) ... build 30-Oct-2019 13:07:36 Selecting previously unselected package libx11-6:amd64. build 30-Oct-2019 13:07:36 Preparing to unpack .../libx11-6_2%3a1.6.3-1ubuntu2.1_amd64.deb ... build 30-Oct-2019 13:07:36 Unpacking libx11-6:amd64 (2:1.6.3-1ubuntu2.1) ... build 30-Oct-2019 13:07:37 Selecting previously unselected package libxext6:amd64. build 30-Oct-2019 13:07:37 Preparing to unpack .../libxext6_2%3a1.3.3-1_amd64.deb ... build 30-Oct-2019 13:07:37 Unpacking libxext6:amd64 (2:1.3.3-1) ... build 30-Oct-2019 13:07:38 Selecting previously unselected package x11-common. build 30-Oct-2019 13:07:38 Preparing to unpack .../x11-common_1%3a7.7+13ubuntu3.1_all.deb ... build 30-Oct-2019 13:07:38 dpkg-query: no packages found matching nux-tools build 30-Oct-2019 13:07:38 Unpacking x11-common (1:7.7+13ubuntu3.1) ... build 30-Oct-2019 13:07:39 Selecting previously unselected package libice6:amd64. build 30-Oct-2019 13:07:39 Preparing to unpack .../libice6_2%3a1.0.9-1_amd64.deb ... build 30-Oct-2019 13:07:40 Unpacking libice6:amd64 (2:1.0.9-1) ... build 30-Oct-2019 13:07:40 Selecting previously unselected package libsm6:amd64. build 30-Oct-2019 13:07:40 Preparing to unpack .../libsm6_2%3a1.2.2-1_amd64.deb ... build 30-Oct-2019 13:07:41 Unpacking libsm6:amd64 (2:1.2.2-1) ... build 30-Oct-2019 13:07:42 Selecting previously unselected package libidn11:amd64. build 30-Oct-2019 13:07:42 Preparing to unpack .../libidn11_1.32-3ubuntu1.2_amd64.deb ... build 30-Oct-2019 13:07:42 Unpacking libidn11:amd64 (1.32-3ubuntu1.2) ... build 30-Oct-2019 13:07:43 Selecting previously unselected package wget. build 30-Oct-2019 13:07:43 Preparing to unpack .../wget_1.17.1-1ubuntu1.5_amd64.deb ... build 30-Oct-2019 13:07:43 Unpacking wget (1.17.1-1ubuntu1.5) ... build 30-Oct-2019 13:07:43 Selecting previously unselected package libxt6:amd64. build 30-Oct-2019 13:07:43 Preparing to unpack .../libxt6_1%3a1.1.5-0ubuntu1_amd64.deb ... build 30-Oct-2019 13:07:44 Unpacking libxt6:amd64 (1:1.1.5-0ubuntu1) ... build 30-Oct-2019 13:07:45 Selecting previously unselected package libxmu6:amd64. build 30-Oct-2019 13:07:45 Preparing to unpack .../libxmu6_2%3a1.1.2-2_amd64.deb ... build 30-Oct-2019 13:07:45 Unpacking libxmu6:amd64 (2:1.1.2-2) ... build 30-Oct-2019 13:07:46 Processing triggers for libc-bin (2.23-0ubuntu9) ... build 30-Oct-2019 13:07:46 Processing triggers for systemd (229-4ubuntu19) ... build 30-Oct-2019 13:07:46 Setting up libxau6:amd64 (1:1.0.8-1) ... build 30-Oct-2019 13:07:47 Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... build 30-Oct-2019 13:07:47 Setting up libxcb1:amd64 (1.11.1-1ubuntu1) ... build 30-Oct-2019 13:07:48 Setting up libx11-data (2:1.6.3-1ubuntu2.1) ... build 30-Oct-2019 13:07:48 Setting up libx11-6:amd64 (2:1.6.3-1ubuntu2.1) ... build 30-Oct-2019 13:07:49 Setting up libxext6:amd64 (2:1.3.3-1) ... build 30-Oct-2019 13:07:49 Setting up x11-common (1:7.7+13ubuntu3.1) ... build 30-Oct-2019 13:07:52 debconf: unable to initialize frontend: Dialog build 30-Oct-2019 13:07:52 debconf: (TERM is not set, so the dialog frontend is not usable.) build 30-Oct-2019 13:07:52 debconf: falling back to frontend: Readline build 30-Oct-2019 13:07:52 debconf: unable to initialize frontend: Readline build 30-Oct-2019 13:07:52 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) build 30-Oct-2019 13:07:52 debconf: falling back to frontend: Teletype build 30-Oct-2019 13:07:52 update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults build 30-Oct-2019 13:07:52 invoke-rc.d: could not determine current runlevel build 30-Oct-2019 13:07:52 invoke-rc.d: policy-rc.d denied execution of start. build 30-Oct-2019 13:07:52 Setting up libice6:amd64 (2:1.0.9-1) ... build 30-Oct-2019 13:07:53 Setting up libsm6:amd64 (2:1.2.2-1) ... build 30-Oct-2019 13:07:53 Setting up libidn11:amd64 (1.32-3ubuntu1.2) ... build 30-Oct-2019 13:07:54 Setting up wget (1.17.1-1ubuntu1.5) ... build 30-Oct-2019 13:07:54 Setting up libxt6:amd64 (1:1.1.5-0ubuntu1) ... build 30-Oct-2019 13:07:55 Setting up libxmu6:amd64 (2:1.1.2-2) ... build 30-Oct-2019 13:07:55 Processing triggers for libc-bin (2.23-0ubuntu9) ... build 30-Oct-2019 13:07:55 Processing triggers for systemd (229-4ubuntu19) ... build 30-Oct-2019 13:07:57 Removing intermediate container ebbd1971e9e1 build 30-Oct-2019 13:07:57 ---> c9ac4a2ad2bc build 30-Oct-2019 13:07:57 Step 8/11 : USER clowder build 30-Oct-2019 13:07:58 ---> Running in edd00db5908b build 30-Oct-2019 13:07:58 Removing intermediate container edd00db5908b build 30-Oct-2019 13:07:58 ---> d18a82c8f4fa build 30-Oct-2019 13:07:58 Step 9/11 : COPY entrypoint.sh *.py *.m data/*.mat *.json /home/clowder/ build 30-Oct-2019 13:08:00 ---> e554722c2be6 build 30-Oct-2019 13:08:00 Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 30-Oct-2019 13:08:02 ---> Running in d0fa64445aa5 build 30-Oct-2019 13:08:03 Removing intermediate container d0fa64445aa5 build 30-Oct-2019 13:08:03 ---> c3cc70cc12dd build 30-Oct-2019 13:08:03 Step 11/11 : CMD ["extractor"] build 30-Oct-2019 13:08:04 ---> Running in 3e0dac433f8e build 30-Oct-2019 13:08:04 Removing intermediate container 3e0dac433f8e build 30-Oct-2019 13:08:04 ---> db5c8f98f4fa build 30-Oct-2019 13:08:04 Successfully built db5c8f98f4fa build 30-Oct-2019 13:08:04 Successfully tagged 24169:latest build 30-Oct-2019 13:08:05 The push refers to repository [docker.io/clowder/extractors-msc-kidney] build 30-Oct-2019 13:08:05 4e9f558717e8: Preparing build 30-Oct-2019 13:08:05 11bf6cf717a0: Preparing build 30-Oct-2019 13:08:05 939703534799: Preparing build 30-Oct-2019 13:08:05 0cdb02ac1d86: Preparing build 30-Oct-2019 13:08:05 f2297bdfc824: Preparing build 30-Oct-2019 13:08:05 0fbe2bcb1bf9: Preparing build 30-Oct-2019 13:08:05 59669fcdd5eb: Preparing build 30-Oct-2019 13:08:05 7f7a065d245a: Preparing build 30-Oct-2019 13:08:05 f96e6b25195f: Preparing build 30-Oct-2019 13:08:05 c56153825175: Preparing build 30-Oct-2019 13:08:05 ae620432889d: Preparing build 30-Oct-2019 13:08:05 a2022691bf95: Preparing build 30-Oct-2019 13:08:05 f96e6b25195f: Waiting build 30-Oct-2019 13:08:05 c56153825175: Waiting build 30-Oct-2019 13:08:05 ae620432889d: Waiting build 30-Oct-2019 13:08:05 0fbe2bcb1bf9: Waiting build 30-Oct-2019 13:08:05 a2022691bf95: Waiting build 30-Oct-2019 13:08:05 59669fcdd5eb: Waiting build 30-Oct-2019 13:08:05 7f7a065d245a: Waiting build 30-Oct-2019 13:08:05 f2297bdfc824: Layer already exists build 30-Oct-2019 13:08:05 0cdb02ac1d86: Layer already exists build 30-Oct-2019 13:08:06 0fbe2bcb1bf9: Layer already exists build 30-Oct-2019 13:08:06 59669fcdd5eb: Layer already exists build 30-Oct-2019 13:08:06 7f7a065d245a: Layer already exists build 30-Oct-2019 13:08:06 f96e6b25195f: Layer already exists build 30-Oct-2019 13:08:06 ae620432889d: Layer already exists build 30-Oct-2019 13:08:06 a2022691bf95: Layer already exists build 30-Oct-2019 13:08:07 4e9f558717e8: Pushed build 30-Oct-2019 13:08:08 11bf6cf717a0: Pushed build 30-Oct-2019 13:08:08 939703534799: Pushed build 30-Oct-2019 13:08:10 c56153825175: Layer already exists build 30-Oct-2019 13:08:12 browndog_v0.2.0: digest: sha256:9c1b647358d76220364d4c8ba6126711e3b25a8ea82433fec721e1701582b79e size: 2826 build 30-Oct-2019 13:08:12 The push refers to repository [docker.io/clowder/extractors-msc-kidney] build 30-Oct-2019 13:08:12 4e9f558717e8: Preparing build 30-Oct-2019 13:08:12 11bf6cf717a0: Preparing build 30-Oct-2019 13:08:12 939703534799: Preparing build 30-Oct-2019 13:08:12 0cdb02ac1d86: Preparing build 30-Oct-2019 13:08:12 f2297bdfc824: Preparing build 30-Oct-2019 13:08:12 0fbe2bcb1bf9: Preparing build 30-Oct-2019 13:08:12 59669fcdd5eb: Preparing build 30-Oct-2019 13:08:12 7f7a065d245a: Preparing build 30-Oct-2019 13:08:12 f96e6b25195f: Preparing build 30-Oct-2019 13:08:12 c56153825175: Preparing build 30-Oct-2019 13:08:12 ae620432889d: Preparing build 30-Oct-2019 13:08:12 a2022691bf95: Preparing build 30-Oct-2019 13:08:12 59669fcdd5eb: Waiting build 30-Oct-2019 13:08:12 7f7a065d245a: Waiting build 30-Oct-2019 13:08:12 f96e6b25195f: Waiting build 30-Oct-2019 13:08:12 c56153825175: Waiting build 30-Oct-2019 13:08:12 ae620432889d: Waiting build 30-Oct-2019 13:08:12 a2022691bf95: Waiting build 30-Oct-2019 13:08:12 0fbe2bcb1bf9: Waiting build 30-Oct-2019 13:08:13 0cdb02ac1d86: Layer already exists build 30-Oct-2019 13:08:13 f2297bdfc824: Layer already exists build 30-Oct-2019 13:08:13 4e9f558717e8: Layer already exists build 30-Oct-2019 13:08:13 11bf6cf717a0: Layer already exists build 30-Oct-2019 13:08:13 939703534799: Layer already exists build 30-Oct-2019 13:08:13 0fbe2bcb1bf9: Layer already exists build 30-Oct-2019 13:08:13 59669fcdd5eb: Layer already exists build 30-Oct-2019 13:08:13 7f7a065d245a: Layer already exists build 30-Oct-2019 13:08:13 c56153825175: Layer already exists build 30-Oct-2019 13:08:13 f96e6b25195f: Layer already exists build 30-Oct-2019 13:08:13 ae620432889d: Layer already exists build 30-Oct-2019 13:08:13 a2022691bf95: Layer already exists build 30-Oct-2019 13:08:13 browndog_v0.3.0: digest: sha256:9c1b647358d76220364d4c8ba6126711e3b25a8ea82433fec721e1701582b79e size: 2826 build 30-Oct-2019 13:08:14 The push refers to repository [docker.io/clowder/extractors-msc-kidney] build 30-Oct-2019 13:08:14 4e9f558717e8: Preparing build 30-Oct-2019 13:08:14 11bf6cf717a0: Preparing build 30-Oct-2019 13:08:14 939703534799: Preparing build 30-Oct-2019 13:08:14 0cdb02ac1d86: Preparing build 30-Oct-2019 13:08:14 f2297bdfc824: Preparing build 30-Oct-2019 13:08:14 0fbe2bcb1bf9: Preparing build 30-Oct-2019 13:08:14 59669fcdd5eb: Preparing build 30-Oct-2019 13:08:14 7f7a065d245a: Preparing build 30-Oct-2019 13:08:14 f96e6b25195f: Preparing build 30-Oct-2019 13:08:14 c56153825175: Preparing build 30-Oct-2019 13:08:14 ae620432889d: Preparing build 30-Oct-2019 13:08:14 a2022691bf95: Preparing build 30-Oct-2019 13:08:14 f96e6b25195f: Waiting build 30-Oct-2019 13:08:14 c56153825175: Waiting build 30-Oct-2019 13:08:14 ae620432889d: Waiting build 30-Oct-2019 13:08:14 a2022691bf95: Waiting build 30-Oct-2019 13:08:14 0fbe2bcb1bf9: Waiting build 30-Oct-2019 13:08:14 59669fcdd5eb: Waiting build 30-Oct-2019 13:08:14 7f7a065d245a: Waiting build 30-Oct-2019 13:08:14 939703534799: Layer already exists build 30-Oct-2019 13:08:14 4e9f558717e8: Layer already exists build 30-Oct-2019 13:08:14 f2297bdfc824: Layer already exists build 30-Oct-2019 13:08:14 11bf6cf717a0: Layer already exists build 30-Oct-2019 13:08:14 0cdb02ac1d86: Layer already exists build 30-Oct-2019 13:08:14 0fbe2bcb1bf9: Layer already exists build 30-Oct-2019 13:08:14 7f7a065d245a: Layer already exists build 30-Oct-2019 13:08:14 59669fcdd5eb: Layer already exists build 30-Oct-2019 13:08:14 f96e6b25195f: Layer already exists build 30-Oct-2019 13:08:14 c56153825175: Layer already exists build 30-Oct-2019 13:08:14 ae620432889d: Layer already exists build 30-Oct-2019 13:08:14 a2022691bf95: Layer already exists build 30-Oct-2019 13:08:15 latest: digest: sha256:9c1b647358d76220364d4c8ba6126711e3b25a8ea82433fec721e1701582b79e size: 2826 build 30-Oct-2019 13:08:15 Untagged: 24169:latest build 30-Oct-2019 13:08:15 Sending build context to Docker daemon 67.07kB build 30-Oct-2019 13:08:15 build 30-Oct-2019 13:08:15 Step 1/11 : FROM clowder/pyclowder:1 build 30-Oct-2019 13:08:15 ---> d1a9e970ed30 build 30-Oct-2019 13:08:15 Step 2/11 : MAINTAINER Yan Zhao build 30-Oct-2019 13:08:16 ---> Running in a09e5b0285db build 30-Oct-2019 13:08:17 Removing intermediate container a09e5b0285db build 30-Oct-2019 13:08:17 ---> 32c601b8037e build 30-Oct-2019 13:08:17 Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.IsletExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Islet.py" build 30-Oct-2019 13:08:17 ---> Running in a4c4a9107956 build 30-Oct-2019 13:08:17 Removing intermediate container a4c4a9107956 build 30-Oct-2019 13:08:17 ---> c21ae4a6942d build 30-Oct-2019 13:08:17 Step 4/11 : USER root build 30-Oct-2019 13:08:18 ---> Running in bc07b39b728a build 30-Oct-2019 13:08:18 Removing intermediate container bc07b39b728a build 30-Oct-2019 13:08:18 ---> 032ecb514ab2 build 30-Oct-2019 13:08:18 Step 5/11 : COPY requirements.txt /home/clowder/ build 30-Oct-2019 13:08:19 ---> 8baada361d81 build 30-Oct-2019 13:08:19 Step 6/11 : RUN pip install --upgrade pip build 30-Oct-2019 13:08:19 ---> Running in b104a230c5a3 build 30-Oct-2019 13:08:21 Collecting pip build 30-Oct-2019 13:08:21 Downloading https://files.pythonhosted.org/packages/00/b6/9cfa56b4081ad13874b0c6f96af8ce16cfbc1cb06bedf8e9164ce5551ec1/pip-19.3.1-py2.py3-none-any.whl (1.4MB) build 30-Oct-2019 13:08:22 Installing collected packages: pip build 30-Oct-2019 13:08:22 Found existing installation: pip 8.1.1 build 30-Oct-2019 13:08:22 Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr build 30-Oct-2019 13:08:22 Successfully installed pip-19.3.1 build 30-Oct-2019 13:08:25 Removing intermediate container b104a230c5a3 build 30-Oct-2019 13:08:25 ---> 240052f680d8 build 30-Oct-2019 13:08:25 Step 7/11 : RUN pip install -r /home/clowder/requirements.txt build 30-Oct-2019 13:08:25 ---> Running in 20dd07260024 build 30-Oct-2019 13:08:27 DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support build 30-Oct-2019 13:08:27 Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) build 30-Oct-2019 13:08:27 Collecting openpyxl==1.6.2 build 30-Oct-2019 13:08:27 Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) build 30-Oct-2019 13:08:28 Collecting pika==0.9.14 build 30-Oct-2019 13:08:28 Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) build 30-Oct-2019 13:08:28 Collecting pymongo==3.2.1 build 30-Oct-2019 13:08:28 Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) build 30-Oct-2019 13:08:29 Collecting pytz==2014.3 build 30-Oct-2019 13:08:29 Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) build 30-Oct-2019 13:08:30 Collecting requests==2.2.1 build 30-Oct-2019 13:08:30 Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) build 30-Oct-2019 13:08:30 Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) build 30-Oct-2019 13:08:30 Collecting xlrd==0.9.3 build 30-Oct-2019 13:08:30 Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) build 30-Oct-2019 13:08:30 Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd build 30-Oct-2019 13:08:30 Running setup.py install for openpyxl: started build 30-Oct-2019 13:08:31 Running setup.py install for openpyxl: finished with status 'done' build 30-Oct-2019 13:08:31 Found existing installation: pika 0.11.0 build 30-Oct-2019 13:08:31 Uninstalling pika-0.11.0: build 30-Oct-2019 13:08:31 Successfully uninstalled pika-0.11.0 build 30-Oct-2019 13:08:31 Running setup.py install for pika: started build 30-Oct-2019 13:08:31 Running setup.py install for pika: finished with status 'done' build 30-Oct-2019 13:08:31 Running setup.py install for pymongo: started build 30-Oct-2019 13:08:31 Running setup.py install for pymongo: finished with status 'done' build 30-Oct-2019 13:08:31 Running setup.py install for pytz: started build 30-Oct-2019 13:08:32 Running setup.py install for pytz: finished with status 'done' build 30-Oct-2019 13:08:32 Found existing installation: requests 2.18.4 build 30-Oct-2019 13:08:32 Uninstalling requests-2.18.4: build 30-Oct-2019 13:08:32 Successfully uninstalled requests-2.18.4 build 30-Oct-2019 13:08:32 Running setup.py install for xlrd: started build 30-Oct-2019 13:08:33 Running setup.py install for xlrd: finished with status 'done' build 30-Oct-2019 13:08:33 Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 build 30-Oct-2019 13:08:35 Removing intermediate container 20dd07260024 build 30-Oct-2019 13:08:35 ---> 04ac6b47f285 build 30-Oct-2019 13:08:35 Step 8/11 : USER clowder build 30-Oct-2019 13:08:35 ---> Running in 9f8f61fb4324 build 30-Oct-2019 13:08:36 Removing intermediate container 9f8f61fb4324 build 30-Oct-2019 13:08:36 ---> f74f0b021616 build 30-Oct-2019 13:08:36 Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ build 30-Oct-2019 13:08:38 ---> 3329056c4465 build 30-Oct-2019 13:08:38 Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 30-Oct-2019 13:08:38 ---> Running in dd0ef67c3d2e build 30-Oct-2019 13:08:38 Removing intermediate container dd0ef67c3d2e build 30-Oct-2019 13:08:38 ---> 05b1d257158a build 30-Oct-2019 13:08:38 Step 11/11 : CMD ["extractor"] build 30-Oct-2019 13:08:39 ---> Running in 57d1709e8532 build 30-Oct-2019 13:08:39 Removing intermediate container 57d1709e8532 build 30-Oct-2019 13:08:39 ---> 26ef71626485 build 30-Oct-2019 13:08:39 Successfully built 26ef71626485 build 30-Oct-2019 13:08:39 Successfully tagged 24169:latest build 30-Oct-2019 13:08:39 The push refers to repository [docker.io/clowder/extractors-msc-islet] build 30-Oct-2019 13:08:40 6e29138a39fb: Preparing build 30-Oct-2019 13:08:40 c4793ada3d2f: Preparing build 30-Oct-2019 13:08:40 d697cf12f622: Preparing build 30-Oct-2019 13:08:40 df35a8bda7fa: Preparing build 30-Oct-2019 13:08:40 0cdb02ac1d86: Preparing build 30-Oct-2019 13:08:40 f2297bdfc824: Preparing build 30-Oct-2019 13:08:40 0fbe2bcb1bf9: Preparing build 30-Oct-2019 13:08:40 59669fcdd5eb: Preparing build 30-Oct-2019 13:08:40 7f7a065d245a: Preparing build 30-Oct-2019 13:08:40 f96e6b25195f: Preparing build 30-Oct-2019 13:08:40 c56153825175: Preparing build 30-Oct-2019 13:08:40 ae620432889d: Preparing build 30-Oct-2019 13:08:40 a2022691bf95: Preparing build 30-Oct-2019 13:08:40 f2297bdfc824: Waiting build 30-Oct-2019 13:08:40 0fbe2bcb1bf9: Waiting build 30-Oct-2019 13:08:40 59669fcdd5eb: Waiting build 30-Oct-2019 13:08:40 7f7a065d245a: Waiting build 30-Oct-2019 13:08:40 f96e6b25195f: Waiting build 30-Oct-2019 13:08:40 c56153825175: Waiting build 30-Oct-2019 13:08:40 ae620432889d: Waiting build 30-Oct-2019 13:08:40 a2022691bf95: Waiting build 30-Oct-2019 13:08:40 0cdb02ac1d86: Layer already exists build 30-Oct-2019 13:08:40 f2297bdfc824: Layer already exists build 30-Oct-2019 13:08:40 0fbe2bcb1bf9: Layer already exists build 30-Oct-2019 13:08:41 59669fcdd5eb: Layer already exists build 30-Oct-2019 13:08:41 7f7a065d245a: Layer already exists build 30-Oct-2019 13:08:41 f96e6b25195f: Layer already exists build 30-Oct-2019 13:08:41 c56153825175: Layer already exists build 30-Oct-2019 13:08:41 df35a8bda7fa: Pushed build 30-Oct-2019 13:08:41 ae620432889d: Layer already exists build 30-Oct-2019 13:08:42 6e29138a39fb: Pushed build 30-Oct-2019 13:08:42 a2022691bf95: Layer already exists build 30-Oct-2019 13:08:42 d697cf12f622: Pushed build 30-Oct-2019 13:08:43 c4793ada3d2f: Pushed build 30-Oct-2019 13:08:46 browndog_v0.2.0: digest: sha256:203db2da656547406ce802c2e94dc1f28d4cad5844bad431ebe31a74201cdf09 size: 3031 build 30-Oct-2019 13:08:46 The push refers to repository [docker.io/clowder/extractors-msc-islet] build 30-Oct-2019 13:08:46 6e29138a39fb: Preparing build 30-Oct-2019 13:08:46 c4793ada3d2f: Preparing build 30-Oct-2019 13:08:46 d697cf12f622: Preparing build 30-Oct-2019 13:08:46 df35a8bda7fa: Preparing build 30-Oct-2019 13:08:46 0cdb02ac1d86: Preparing build 30-Oct-2019 13:08:46 f2297bdfc824: Preparing build 30-Oct-2019 13:08:46 0fbe2bcb1bf9: Preparing build 30-Oct-2019 13:08:46 59669fcdd5eb: Preparing build 30-Oct-2019 13:08:46 7f7a065d245a: Preparing build 30-Oct-2019 13:08:46 f96e6b25195f: Preparing build 30-Oct-2019 13:08:46 c56153825175: Preparing build 30-Oct-2019 13:08:46 ae620432889d: Preparing build 30-Oct-2019 13:08:46 a2022691bf95: Preparing build 30-Oct-2019 13:08:46 7f7a065d245a: Waiting build 30-Oct-2019 13:08:46 f96e6b25195f: Waiting build 30-Oct-2019 13:08:46 c56153825175: Waiting build 30-Oct-2019 13:08:46 ae620432889d: Waiting build 30-Oct-2019 13:08:46 a2022691bf95: Waiting build 30-Oct-2019 13:08:46 f2297bdfc824: Waiting build 30-Oct-2019 13:08:46 0fbe2bcb1bf9: Waiting build 30-Oct-2019 13:08:46 59669fcdd5eb: Waiting build 30-Oct-2019 13:08:46 d697cf12f622: Layer already exists build 30-Oct-2019 13:08:46 df35a8bda7fa: Layer already exists build 30-Oct-2019 13:08:46 0cdb02ac1d86: Layer already exists build 30-Oct-2019 13:08:46 6e29138a39fb: Layer already exists build 30-Oct-2019 13:08:46 c4793ada3d2f: Layer already exists build 30-Oct-2019 13:08:46 59669fcdd5eb: Layer already exists build 30-Oct-2019 13:08:46 f2297bdfc824: Layer already exists build 30-Oct-2019 13:08:46 0fbe2bcb1bf9: Layer already exists build 30-Oct-2019 13:08:46 7f7a065d245a: Layer already exists build 30-Oct-2019 13:08:47 ae620432889d: Layer already exists build 30-Oct-2019 13:08:47 c56153825175: Layer already exists build 30-Oct-2019 13:08:47 a2022691bf95: Layer already exists build 30-Oct-2019 13:08:50 f96e6b25195f: Layer already exists build 30-Oct-2019 13:08:51 browndog_v0.3.0: digest: sha256:203db2da656547406ce802c2e94dc1f28d4cad5844bad431ebe31a74201cdf09 size: 3031 build 30-Oct-2019 13:08:51 The push refers to repository [docker.io/clowder/extractors-msc-islet] build 30-Oct-2019 13:08:51 6e29138a39fb: Preparing build 30-Oct-2019 13:08:51 c4793ada3d2f: Preparing build 30-Oct-2019 13:08:51 d697cf12f622: Preparing build 30-Oct-2019 13:08:51 df35a8bda7fa: Preparing build 30-Oct-2019 13:08:51 0cdb02ac1d86: Preparing build 30-Oct-2019 13:08:51 f2297bdfc824: Preparing build 30-Oct-2019 13:08:51 0fbe2bcb1bf9: Preparing build 30-Oct-2019 13:08:51 59669fcdd5eb: Preparing build 30-Oct-2019 13:08:51 7f7a065d245a: Preparing build 30-Oct-2019 13:08:51 f96e6b25195f: Preparing build 30-Oct-2019 13:08:51 c56153825175: Preparing build 30-Oct-2019 13:08:51 ae620432889d: Preparing build 30-Oct-2019 13:08:51 a2022691bf95: Preparing build 30-Oct-2019 13:08:51 59669fcdd5eb: Waiting build 30-Oct-2019 13:08:51 7f7a065d245a: Waiting build 30-Oct-2019 13:08:51 f96e6b25195f: Waiting build 30-Oct-2019 13:08:51 c56153825175: Waiting build 30-Oct-2019 13:08:51 ae620432889d: Waiting build 30-Oct-2019 13:08:51 a2022691bf95: Waiting build 30-Oct-2019 13:08:51 f2297bdfc824: Waiting build 30-Oct-2019 13:08:51 0fbe2bcb1bf9: Waiting build 30-Oct-2019 13:08:52 df35a8bda7fa: Layer already exists build 30-Oct-2019 13:08:52 d697cf12f622: Layer already exists build 30-Oct-2019 13:08:52 c4793ada3d2f: Layer already exists build 30-Oct-2019 13:08:52 6e29138a39fb: Layer already exists build 30-Oct-2019 13:08:52 0cdb02ac1d86: Layer already exists build 30-Oct-2019 13:08:52 7f7a065d245a: Layer already exists build 30-Oct-2019 13:08:52 59669fcdd5eb: Layer already exists build 30-Oct-2019 13:08:52 f2297bdfc824: Layer already exists build 30-Oct-2019 13:08:52 f96e6b25195f: Layer already exists build 30-Oct-2019 13:08:52 0fbe2bcb1bf9: Layer already exists build 30-Oct-2019 13:08:52 c56153825175: Layer already exists build 30-Oct-2019 13:08:52 ae620432889d: Layer already exists build 30-Oct-2019 13:08:52 a2022691bf95: Layer already exists build 30-Oct-2019 13:08:52 latest: digest: sha256:203db2da656547406ce802c2e94dc1f28d4cad5844bad431ebe31a74201cdf09 size: 3031 build 30-Oct-2019 13:08:52 Untagged: 24169:latest build 30-Oct-2019 13:08:52 Sending build context to Docker daemon 66.05kB build 30-Oct-2019 13:08:52 build 30-Oct-2019 13:08:53 Step 1/11 : FROM clowder/pyclowder:1 build 30-Oct-2019 13:08:53 ---> d1a9e970ed30 build 30-Oct-2019 13:08:53 Step 2/11 : MAINTAINER Yan Zhao build 30-Oct-2019 13:08:53 ---> Using cache build 30-Oct-2019 13:08:53 ---> 32c601b8037e build 30-Oct-2019 13:08:53 Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.ChemCBCExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Chem.py" build 30-Oct-2019 13:08:53 ---> Running in 93ba7cce564e build 30-Oct-2019 13:08:53 Removing intermediate container 93ba7cce564e build 30-Oct-2019 13:08:53 ---> 1eeba75093d6 build 30-Oct-2019 13:08:53 Step 4/11 : USER root build 30-Oct-2019 13:08:53 ---> Running in c37a6e343627 build 30-Oct-2019 13:08:54 Removing intermediate container c37a6e343627 build 30-Oct-2019 13:08:54 ---> e8a8fa379c58 build 30-Oct-2019 13:08:54 Step 5/11 : COPY requirements.txt /home/clowder/ build 30-Oct-2019 13:08:55 ---> 6d57b8d9eaf8 build 30-Oct-2019 13:08:55 Step 6/11 : RUN pip install --upgrade pip build 30-Oct-2019 13:08:55 ---> Running in 22a5f6d711ad build 30-Oct-2019 13:08:58 Collecting pip build 30-Oct-2019 13:08:58 Downloading https://files.pythonhosted.org/packages/00/b6/9cfa56b4081ad13874b0c6f96af8ce16cfbc1cb06bedf8e9164ce5551ec1/pip-19.3.1-py2.py3-none-any.whl (1.4MB) build 30-Oct-2019 13:08:58 Installing collected packages: pip build 30-Oct-2019 13:08:58 Found existing installation: pip 8.1.1 build 30-Oct-2019 13:08:58 Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr build 30-Oct-2019 13:08:59 Successfully installed pip-19.3.1 build 30-Oct-2019 13:09:01 Removing intermediate container 22a5f6d711ad build 30-Oct-2019 13:09:01 ---> daf1696a559d build 30-Oct-2019 13:09:01 Step 7/11 : RUN pip install -r /home/clowder/requirements.txt build 30-Oct-2019 13:09:01 ---> Running in e9fd7c1476f5 build 30-Oct-2019 13:09:03 DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support build 30-Oct-2019 13:09:03 Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) build 30-Oct-2019 13:09:03 Collecting openpyxl==1.6.2 build 30-Oct-2019 13:09:03 Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) build 30-Oct-2019 13:09:04 Collecting pika==0.9.14 build 30-Oct-2019 13:09:04 Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) build 30-Oct-2019 13:09:05 Collecting pymongo==3.2.1 build 30-Oct-2019 13:09:05 Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) build 30-Oct-2019 13:09:06 Collecting pytz==2014.3 build 30-Oct-2019 13:09:06 Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) build 30-Oct-2019 13:09:07 Collecting requests==2.2.1 build 30-Oct-2019 13:09:07 Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) build 30-Oct-2019 13:09:07 Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) build 30-Oct-2019 13:09:07 Collecting xlrd==0.9.3 build 30-Oct-2019 13:09:07 Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) build 30-Oct-2019 13:09:08 Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd build 30-Oct-2019 13:09:08 Running setup.py install for openpyxl: started build 30-Oct-2019 13:09:08 Running setup.py install for openpyxl: finished with status 'done' build 30-Oct-2019 13:09:08 Found existing installation: pika 0.11.0 build 30-Oct-2019 13:09:08 Uninstalling pika-0.11.0: build 30-Oct-2019 13:09:08 Successfully uninstalled pika-0.11.0 build 30-Oct-2019 13:09:08 Running setup.py install for pika: started build 30-Oct-2019 13:09:08 Running setup.py install for pika: finished with status 'done' build 30-Oct-2019 13:09:08 Running setup.py install for pymongo: started build 30-Oct-2019 13:09:09 Running setup.py install for pymongo: finished with status 'done' build 30-Oct-2019 13:09:09 Running setup.py install for pytz: started build 30-Oct-2019 13:09:09 Running setup.py install for pytz: finished with status 'done' build 30-Oct-2019 13:09:09 Found existing installation: requests 2.18.4 build 30-Oct-2019 13:09:09 Uninstalling requests-2.18.4: build 30-Oct-2019 13:09:09 Successfully uninstalled requests-2.18.4 build 30-Oct-2019 13:09:10 Running setup.py install for xlrd: started build 30-Oct-2019 13:09:10 Running setup.py install for xlrd: finished with status 'done' build 30-Oct-2019 13:09:10 Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 build 30-Oct-2019 13:09:13 Removing intermediate container e9fd7c1476f5 build 30-Oct-2019 13:09:13 ---> 407f76a92477 build 30-Oct-2019 13:09:13 Step 8/11 : USER clowder build 30-Oct-2019 13:09:14 ---> Running in fbd498a6b4d2 build 30-Oct-2019 13:09:14 Removing intermediate container fbd498a6b4d2 build 30-Oct-2019 13:09:14 ---> 788abf79dae2 build 30-Oct-2019 13:09:14 Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ build 30-Oct-2019 13:09:15 ---> a7d9220a8408 build 30-Oct-2019 13:09:15 Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 30-Oct-2019 13:09:15 ---> Running in b36dd9503fd3 build 30-Oct-2019 13:09:16 Removing intermediate container b36dd9503fd3 build 30-Oct-2019 13:09:16 ---> 31c4f0ebf6b9 build 30-Oct-2019 13:09:16 Step 11/11 : CMD ["extractor"] build 30-Oct-2019 13:09:16 ---> Running in a40c46d11ac5 build 30-Oct-2019 13:09:17 Removing intermediate container a40c46d11ac5 build 30-Oct-2019 13:09:17 ---> 1299f62209ba build 30-Oct-2019 13:09:17 Successfully built 1299f62209ba build 30-Oct-2019 13:09:18 Successfully tagged 24169:latest build 30-Oct-2019 13:09:18 The push refers to repository [docker.io/clowder/extractors-msc-chemcbc] build 30-Oct-2019 13:09:18 77e579ebc1ed: Preparing build 30-Oct-2019 13:09:18 b5ea620b9fee: Preparing build 30-Oct-2019 13:09:18 871d39024ec0: Preparing build 30-Oct-2019 13:09:18 43a3a96d7f2d: Preparing build 30-Oct-2019 13:09:18 0cdb02ac1d86: Preparing build 30-Oct-2019 13:09:18 f2297bdfc824: Preparing build 30-Oct-2019 13:09:18 0fbe2bcb1bf9: Preparing build 30-Oct-2019 13:09:18 59669fcdd5eb: Preparing build 30-Oct-2019 13:09:18 7f7a065d245a: Preparing build 30-Oct-2019 13:09:18 f96e6b25195f: Preparing build 30-Oct-2019 13:09:18 c56153825175: Preparing build 30-Oct-2019 13:09:18 ae620432889d: Preparing build 30-Oct-2019 13:09:18 a2022691bf95: Preparing build 30-Oct-2019 13:09:18 f2297bdfc824: Waiting build 30-Oct-2019 13:09:18 c56153825175: Waiting build 30-Oct-2019 13:09:18 ae620432889d: Waiting build 30-Oct-2019 13:09:18 0fbe2bcb1bf9: Waiting build 30-Oct-2019 13:09:18 a2022691bf95: Waiting build 30-Oct-2019 13:09:18 59669fcdd5eb: Waiting build 30-Oct-2019 13:09:18 7f7a065d245a: Waiting build 30-Oct-2019 13:09:18 f96e6b25195f: Waiting build 30-Oct-2019 13:09:18 0cdb02ac1d86: Layer already exists build 30-Oct-2019 13:09:19 f2297bdfc824: Layer already exists build 30-Oct-2019 13:09:19 0fbe2bcb1bf9: Layer already exists build 30-Oct-2019 13:09:19 59669fcdd5eb: Layer already exists build 30-Oct-2019 13:09:19 7f7a065d245a: Layer already exists build 30-Oct-2019 13:09:19 f96e6b25195f: Layer already exists build 30-Oct-2019 13:09:20 c56153825175: Layer already exists build 30-Oct-2019 13:09:20 ae620432889d: Layer already exists build 30-Oct-2019 13:09:20 77e579ebc1ed: Pushed build 30-Oct-2019 13:09:20 a2022691bf95: Layer already exists build 30-Oct-2019 13:09:20 43a3a96d7f2d: Pushed build 30-Oct-2019 13:09:21 b5ea620b9fee: Pushed build 30-Oct-2019 13:09:21 871d39024ec0: Pushed build 30-Oct-2019 13:09:24 browndog_v0.2.0: digest: sha256:b4c89d04bbc38899239915b4322dab353e5cce32e5ba0e8792f6e3befac99b72 size: 3031 build 30-Oct-2019 13:09:24 The push refers to repository [docker.io/clowder/extractors-msc-chemcbc] build 30-Oct-2019 13:09:24 77e579ebc1ed: Preparing build 30-Oct-2019 13:09:24 b5ea620b9fee: Preparing build 30-Oct-2019 13:09:24 871d39024ec0: Preparing build 30-Oct-2019 13:09:24 43a3a96d7f2d: Preparing build 30-Oct-2019 13:09:24 0cdb02ac1d86: Preparing build 30-Oct-2019 13:09:24 f2297bdfc824: Preparing build 30-Oct-2019 13:09:24 0fbe2bcb1bf9: Preparing build 30-Oct-2019 13:09:24 59669fcdd5eb: Preparing build 30-Oct-2019 13:09:24 7f7a065d245a: Preparing build 30-Oct-2019 13:09:24 f96e6b25195f: Preparing build 30-Oct-2019 13:09:24 c56153825175: Preparing build 30-Oct-2019 13:09:24 ae620432889d: Preparing build 30-Oct-2019 13:09:24 a2022691bf95: Preparing build 30-Oct-2019 13:09:24 f2297bdfc824: Waiting build 30-Oct-2019 13:09:24 ae620432889d: Waiting build 30-Oct-2019 13:09:24 59669fcdd5eb: Waiting build 30-Oct-2019 13:09:24 0fbe2bcb1bf9: Waiting build 30-Oct-2019 13:09:24 7f7a065d245a: Waiting build 30-Oct-2019 13:09:24 c56153825175: Waiting build 30-Oct-2019 13:09:24 a2022691bf95: Waiting build 30-Oct-2019 13:09:24 f96e6b25195f: Waiting build 30-Oct-2019 13:09:25 871d39024ec0: Layer already exists build 30-Oct-2019 13:09:25 77e579ebc1ed: Layer already exists build 30-Oct-2019 13:09:25 43a3a96d7f2d: Layer already exists build 30-Oct-2019 13:09:25 b5ea620b9fee: Layer already exists build 30-Oct-2019 13:09:25 0cdb02ac1d86: Layer already exists build 30-Oct-2019 13:09:25 0fbe2bcb1bf9: Layer already exists build 30-Oct-2019 13:09:25 f2297bdfc824: Layer already exists build 30-Oct-2019 13:09:25 7f7a065d245a: Layer already exists build 30-Oct-2019 13:09:25 59669fcdd5eb: Layer already exists build 30-Oct-2019 13:09:25 f96e6b25195f: Layer already exists build 30-Oct-2019 13:09:25 c56153825175: Layer already exists build 30-Oct-2019 13:09:25 ae620432889d: Layer already exists build 30-Oct-2019 13:09:25 a2022691bf95: Layer already exists build 30-Oct-2019 13:09:25 browndog_v0.3.0: digest: sha256:b4c89d04bbc38899239915b4322dab353e5cce32e5ba0e8792f6e3befac99b72 size: 3031 build 30-Oct-2019 13:09:26 The push refers to repository [docker.io/clowder/extractors-msc-chemcbc] build 30-Oct-2019 13:09:26 77e579ebc1ed: Preparing build 30-Oct-2019 13:09:26 b5ea620b9fee: Preparing build 30-Oct-2019 13:09:26 871d39024ec0: Preparing build 30-Oct-2019 13:09:26 43a3a96d7f2d: Preparing build 30-Oct-2019 13:09:26 0cdb02ac1d86: Preparing build 30-Oct-2019 13:09:26 f2297bdfc824: Preparing build 30-Oct-2019 13:09:26 0fbe2bcb1bf9: Preparing build 30-Oct-2019 13:09:26 59669fcdd5eb: Preparing build 30-Oct-2019 13:09:26 7f7a065d245a: Preparing build 30-Oct-2019 13:09:26 f96e6b25195f: Preparing build 30-Oct-2019 13:09:26 c56153825175: Preparing build 30-Oct-2019 13:09:26 ae620432889d: Preparing build 30-Oct-2019 13:09:26 a2022691bf95: Preparing build 30-Oct-2019 13:09:26 7f7a065d245a: Waiting build 30-Oct-2019 13:09:26 f2297bdfc824: Waiting build 30-Oct-2019 13:09:26 f96e6b25195f: Waiting build 30-Oct-2019 13:09:26 0fbe2bcb1bf9: Waiting build 30-Oct-2019 13:09:26 c56153825175: Waiting build 30-Oct-2019 13:09:26 ae620432889d: Waiting build 30-Oct-2019 13:09:26 59669fcdd5eb: Waiting build 30-Oct-2019 13:09:26 a2022691bf95: Waiting build 30-Oct-2019 13:09:26 871d39024ec0: Layer already exists build 30-Oct-2019 13:09:26 77e579ebc1ed: Layer already exists build 30-Oct-2019 13:09:26 b5ea620b9fee: Layer already exists build 30-Oct-2019 13:09:26 0cdb02ac1d86: Layer already exists build 30-Oct-2019 13:09:26 f2297bdfc824: Layer already exists build 30-Oct-2019 13:09:26 59669fcdd5eb: Layer already exists build 30-Oct-2019 13:09:26 f96e6b25195f: Layer already exists build 30-Oct-2019 13:09:26 0fbe2bcb1bf9: Layer already exists build 30-Oct-2019 13:09:26 c56153825175: Layer already exists build 30-Oct-2019 13:09:27 ae620432889d: Layer already exists build 30-Oct-2019 13:09:27 a2022691bf95: Layer already exists build 30-Oct-2019 13:09:27 7f7a065d245a: Layer already exists build 30-Oct-2019 13:09:27 43a3a96d7f2d: Layer already exists build 30-Oct-2019 13:09:28 latest: digest: sha256:b4c89d04bbc38899239915b4322dab353e5cce32e5ba0e8792f6e3befac99b72 size: 3031 build 30-Oct-2019 13:09:28 Untagged: 24169:latest build 30-Oct-2019 13:09:28 Sending build context to Docker daemon 198.1kB build 30-Oct-2019 13:09:28 build 30-Oct-2019 13:09:28 Step 1/11 : FROM clowder/pyclowder:1 build 30-Oct-2019 13:09:28 ---> d1a9e970ed30 build 30-Oct-2019 13:09:28 Step 2/11 : MAINTAINER Yan Zhao build 30-Oct-2019 13:09:28 ---> Using cache build 30-Oct-2019 13:09:28 ---> 32c601b8037e build 30-Oct-2019 13:09:28 Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.MonitorExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Monitor.py" build 30-Oct-2019 13:09:29 ---> Running in 752f15f2f3cc build 30-Oct-2019 13:09:29 Removing intermediate container 752f15f2f3cc build 30-Oct-2019 13:09:29 ---> 398b6f5db2f2 build 30-Oct-2019 13:09:29 Step 4/11 : USER root build 30-Oct-2019 13:09:30 ---> Running in 17ce5bad31fa build 30-Oct-2019 13:09:30 Removing intermediate container 17ce5bad31fa build 30-Oct-2019 13:09:30 ---> 0a410455b157 build 30-Oct-2019 13:09:30 Step 5/11 : COPY requirements.txt /home/clowder/ build 30-Oct-2019 13:09:31 ---> 15e93e93a1f0 build 30-Oct-2019 13:09:31 Step 6/11 : RUN pip install --upgrade pip build 30-Oct-2019 13:09:32 ---> Running in 3a1a632ee3d7 build 30-Oct-2019 13:09:34 Collecting pip build 30-Oct-2019 13:09:34 Downloading https://files.pythonhosted.org/packages/00/b6/9cfa56b4081ad13874b0c6f96af8ce16cfbc1cb06bedf8e9164ce5551ec1/pip-19.3.1-py2.py3-none-any.whl (1.4MB) build 30-Oct-2019 13:09:34 Installing collected packages: pip build 30-Oct-2019 13:09:34 Found existing installation: pip 8.1.1 build 30-Oct-2019 13:09:34 Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr build 30-Oct-2019 13:09:35 Successfully installed pip-19.3.1 build 30-Oct-2019 13:09:37 Removing intermediate container 3a1a632ee3d7 build 30-Oct-2019 13:09:37 ---> bfb60b34f72a build 30-Oct-2019 13:09:37 Step 7/11 : RUN pip install -r /home/clowder/requirements.txt build 30-Oct-2019 13:09:38 ---> Running in 3736068cad29 build 30-Oct-2019 13:09:40 DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support build 30-Oct-2019 13:09:40 Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) build 30-Oct-2019 13:09:40 Collecting openpyxl==1.6.2 build 30-Oct-2019 13:09:40 Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) build 30-Oct-2019 13:09:40 Collecting pika==0.9.14 build 30-Oct-2019 13:09:40 Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) build 30-Oct-2019 13:09:41 Collecting pymongo==3.2.1 build 30-Oct-2019 13:09:41 Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) build 30-Oct-2019 13:09:42 Collecting pytz==2014.3 build 30-Oct-2019 13:09:42 Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) build 30-Oct-2019 13:09:43 Collecting requests==2.2.1 build 30-Oct-2019 13:09:43 Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) build 30-Oct-2019 13:09:43 Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) build 30-Oct-2019 13:09:43 Collecting xlrd==0.9.3 build 30-Oct-2019 13:09:43 Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) build 30-Oct-2019 13:09:43 Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd build 30-Oct-2019 13:09:43 Running setup.py install for openpyxl: started build 30-Oct-2019 13:09:44 Running setup.py install for openpyxl: finished with status 'done' build 30-Oct-2019 13:09:44 Found existing installation: pika 0.11.0 build 30-Oct-2019 13:09:44 Uninstalling pika-0.11.0: build 30-Oct-2019 13:09:44 Successfully uninstalled pika-0.11.0 build 30-Oct-2019 13:09:44 Running setup.py install for pika: started build 30-Oct-2019 13:09:44 Running setup.py install for pika: finished with status 'done' build 30-Oct-2019 13:09:44 Running setup.py install for pymongo: started build 30-Oct-2019 13:09:44 Running setup.py install for pymongo: finished with status 'done' build 30-Oct-2019 13:09:44 Running setup.py install for pytz: started build 30-Oct-2019 13:09:45 Running setup.py install for pytz: finished with status 'done' build 30-Oct-2019 13:09:45 Found existing installation: requests 2.18.4 build 30-Oct-2019 13:09:45 Uninstalling requests-2.18.4: build 30-Oct-2019 13:09:45 Successfully uninstalled requests-2.18.4 build 30-Oct-2019 13:09:45 Running setup.py install for xlrd: started build 30-Oct-2019 13:09:46 Running setup.py install for xlrd: finished with status 'done' build 30-Oct-2019 13:09:46 Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 build 30-Oct-2019 13:09:48 Removing intermediate container 3736068cad29 build 30-Oct-2019 13:09:48 ---> c754b7ae8195 build 30-Oct-2019 13:09:48 Step 8/11 : USER clowder build 30-Oct-2019 13:09:49 ---> Running in 44989eeb4771 build 30-Oct-2019 13:09:50 Removing intermediate container 44989eeb4771 build 30-Oct-2019 13:09:50 ---> dc27acf343e4 build 30-Oct-2019 13:09:50 Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ build 30-Oct-2019 13:09:51 ---> 9000ce40cd0f build 30-Oct-2019 13:09:51 Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 30-Oct-2019 13:09:51 ---> Running in f0e1a34d38f1 build 30-Oct-2019 13:09:52 Removing intermediate container f0e1a34d38f1 build 30-Oct-2019 13:09:52 ---> 5232133a95a0 build 30-Oct-2019 13:09:52 Step 11/11 : CMD ["extractor"] build 30-Oct-2019 13:09:52 ---> Running in 2a80e1e00fa4 build 30-Oct-2019 13:09:52 Removing intermediate container 2a80e1e00fa4 build 30-Oct-2019 13:09:52 ---> 5d8582e94f5f build 30-Oct-2019 13:09:52 Successfully built 5d8582e94f5f build 30-Oct-2019 13:09:52 Successfully tagged 24169:latest build 30-Oct-2019 13:09:53 The push refers to repository [docker.io/clowder/extractors-msc-monitor] build 30-Oct-2019 13:09:53 fca1ee144aeb: Preparing build 30-Oct-2019 13:09:53 3bf76b316fec: Preparing build 30-Oct-2019 13:09:53 0aa66b177f1a: Preparing build 30-Oct-2019 13:09:53 4dd656f557f4: Preparing build 30-Oct-2019 13:09:53 0cdb02ac1d86: Preparing build 30-Oct-2019 13:09:53 f2297bdfc824: Preparing build 30-Oct-2019 13:09:53 0fbe2bcb1bf9: Preparing build 30-Oct-2019 13:09:53 59669fcdd5eb: Preparing build 30-Oct-2019 13:09:53 7f7a065d245a: Preparing build 30-Oct-2019 13:09:53 f96e6b25195f: Preparing build 30-Oct-2019 13:09:53 c56153825175: Preparing build 30-Oct-2019 13:09:53 ae620432889d: Preparing build 30-Oct-2019 13:09:53 a2022691bf95: Preparing build 30-Oct-2019 13:09:53 59669fcdd5eb: Waiting build 30-Oct-2019 13:09:53 7f7a065d245a: Waiting build 30-Oct-2019 13:09:53 f96e6b25195f: Waiting build 30-Oct-2019 13:09:53 c56153825175: Waiting build 30-Oct-2019 13:09:53 a2022691bf95: Waiting build 30-Oct-2019 13:09:53 ae620432889d: Waiting build 30-Oct-2019 13:09:53 f2297bdfc824: Waiting build 30-Oct-2019 13:09:53 0fbe2bcb1bf9: Waiting build 30-Oct-2019 13:09:53 0cdb02ac1d86: Layer already exists build 30-Oct-2019 13:09:53 f2297bdfc824: Layer already exists build 30-Oct-2019 13:09:53 0fbe2bcb1bf9: Layer already exists build 30-Oct-2019 13:09:54 59669fcdd5eb: Layer already exists build 30-Oct-2019 13:09:54 7f7a065d245a: Layer already exists build 30-Oct-2019 13:09:54 f96e6b25195f: Layer already exists build 30-Oct-2019 13:09:55 c56153825175: Layer already exists build 30-Oct-2019 13:09:55 4dd656f557f4: Pushed build 30-Oct-2019 13:09:55 fca1ee144aeb: Pushed build 30-Oct-2019 13:09:55 ae620432889d: Layer already exists build 30-Oct-2019 13:09:55 a2022691bf95: Layer already exists build 30-Oct-2019 13:09:56 0aa66b177f1a: Pushed build 30-Oct-2019 13:09:56 3bf76b316fec: Pushed build 30-Oct-2019 13:09:59 browndog_v0.2.0: digest: sha256:adaa1ad86a6849180de327ce386d7d13180f546208e2b265f3383abcf645f1dc size: 3031 build 30-Oct-2019 13:09:59 The push refers to repository [docker.io/clowder/extractors-msc-monitor] build 30-Oct-2019 13:09:59 fca1ee144aeb: Preparing build 30-Oct-2019 13:09:59 3bf76b316fec: Preparing build 30-Oct-2019 13:09:59 0aa66b177f1a: Preparing build 30-Oct-2019 13:09:59 4dd656f557f4: Preparing build 30-Oct-2019 13:09:59 0cdb02ac1d86: Preparing build 30-Oct-2019 13:09:59 f2297bdfc824: Preparing build 30-Oct-2019 13:09:59 0fbe2bcb1bf9: Preparing build 30-Oct-2019 13:09:59 59669fcdd5eb: Preparing build 30-Oct-2019 13:09:59 7f7a065d245a: Preparing build 30-Oct-2019 13:09:59 f96e6b25195f: Preparing build 30-Oct-2019 13:09:59 c56153825175: Preparing build 30-Oct-2019 13:09:59 ae620432889d: Preparing build 30-Oct-2019 13:09:59 a2022691bf95: Preparing build 30-Oct-2019 13:09:59 0fbe2bcb1bf9: Waiting build 30-Oct-2019 13:09:59 59669fcdd5eb: Waiting build 30-Oct-2019 13:09:59 7f7a065d245a: Waiting build 30-Oct-2019 13:09:59 f2297bdfc824: Waiting build 30-Oct-2019 13:09:59 f96e6b25195f: Waiting build 30-Oct-2019 13:09:59 ae620432889d: Waiting build 30-Oct-2019 13:09:59 c56153825175: Waiting build 30-Oct-2019 13:09:59 a2022691bf95: Waiting build 30-Oct-2019 13:09:59 4dd656f557f4: Layer already exists build 30-Oct-2019 13:09:59 0cdb02ac1d86: Layer already exists build 30-Oct-2019 13:09:59 0aa66b177f1a: Layer already exists build 30-Oct-2019 13:09:59 3bf76b316fec: Layer already exists build 30-Oct-2019 13:09:59 fca1ee144aeb: Layer already exists build 30-Oct-2019 13:10:00 f2297bdfc824: Layer already exists build 30-Oct-2019 13:10:00 0fbe2bcb1bf9: Layer already exists build 30-Oct-2019 13:10:00 7f7a065d245a: Layer already exists build 30-Oct-2019 13:10:00 f96e6b25195f: Layer already exists build 30-Oct-2019 13:10:00 59669fcdd5eb: Layer already exists build 30-Oct-2019 13:10:00 c56153825175: Layer already exists build 30-Oct-2019 13:10:00 a2022691bf95: Layer already exists build 30-Oct-2019 13:10:00 ae620432889d: Layer already exists build 30-Oct-2019 13:10:00 browndog_v0.3.0: digest: sha256:adaa1ad86a6849180de327ce386d7d13180f546208e2b265f3383abcf645f1dc size: 3031 build 30-Oct-2019 13:10:00 The push refers to repository [docker.io/clowder/extractors-msc-monitor] build 30-Oct-2019 13:10:01 fca1ee144aeb: Preparing build 30-Oct-2019 13:10:01 3bf76b316fec: Preparing build 30-Oct-2019 13:10:01 0aa66b177f1a: Preparing build 30-Oct-2019 13:10:01 4dd656f557f4: Preparing build 30-Oct-2019 13:10:01 0cdb02ac1d86: Preparing build 30-Oct-2019 13:10:01 f2297bdfc824: Preparing build 30-Oct-2019 13:10:01 0fbe2bcb1bf9: Preparing build 30-Oct-2019 13:10:01 59669fcdd5eb: Preparing build 30-Oct-2019 13:10:01 7f7a065d245a: Preparing build 30-Oct-2019 13:10:01 f96e6b25195f: Preparing build 30-Oct-2019 13:10:01 c56153825175: Preparing build 30-Oct-2019 13:10:01 ae620432889d: Preparing build 30-Oct-2019 13:10:01 a2022691bf95: Preparing build 30-Oct-2019 13:10:01 f2297bdfc824: Waiting build 30-Oct-2019 13:10:01 0fbe2bcb1bf9: Waiting build 30-Oct-2019 13:10:01 59669fcdd5eb: Waiting build 30-Oct-2019 13:10:01 7f7a065d245a: Waiting build 30-Oct-2019 13:10:01 f96e6b25195f: Waiting build 30-Oct-2019 13:10:01 c56153825175: Waiting build 30-Oct-2019 13:10:01 ae620432889d: Waiting build 30-Oct-2019 13:10:01 a2022691bf95: Waiting build 30-Oct-2019 13:10:01 fca1ee144aeb: Layer already exists build 30-Oct-2019 13:10:01 0cdb02ac1d86: Layer already exists build 30-Oct-2019 13:10:01 3bf76b316fec: Layer already exists build 30-Oct-2019 13:10:01 0aa66b177f1a: Layer already exists build 30-Oct-2019 13:10:01 4dd656f557f4: Layer already exists build 30-Oct-2019 13:10:01 f2297bdfc824: Layer already exists build 30-Oct-2019 13:10:01 0fbe2bcb1bf9: Layer already exists build 30-Oct-2019 13:10:01 59669fcdd5eb: Layer already exists build 30-Oct-2019 13:10:01 7f7a065d245a: Layer already exists build 30-Oct-2019 13:10:01 f96e6b25195f: Layer already exists build 30-Oct-2019 13:10:01 c56153825175: Layer already exists build 30-Oct-2019 13:10:01 ae620432889d: Layer already exists build 30-Oct-2019 13:10:01 a2022691bf95: Layer already exists build 30-Oct-2019 13:10:02 latest: digest: sha256:adaa1ad86a6849180de327ce386d7d13180f546208e2b265f3383abcf645f1dc size: 3031 build 30-Oct-2019 13:10:02 Untagged: 24169:latest build 30-Oct-2019 13:10:02 Sending build context to Docker daemon 12.1MB build 30-Oct-2019 13:10:02 build 30-Oct-2019 13:10:02 Step 1/11 : FROM clowder/pyclowder:1 build 30-Oct-2019 13:10:02 ---> d1a9e970ed30 build 30-Oct-2019 13:10:02 Step 2/11 : MAINTAINER Yan Zhao build 30-Oct-2019 13:10:02 ---> Using cache build 30-Oct-2019 13:10:02 ---> 32c601b8037e build 30-Oct-2019 13:10:02 Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.PhenotypeExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Phenotype.py" build 30-Oct-2019 13:10:02 ---> Running in 76d3da50adf2 build 30-Oct-2019 13:10:04 Removing intermediate container 76d3da50adf2 build 30-Oct-2019 13:10:04 ---> 00b637c50b8b build 30-Oct-2019 13:10:04 Step 4/11 : USER root build 30-Oct-2019 13:10:04 ---> Running in 503a0b4fdcd8 build 30-Oct-2019 13:10:05 Removing intermediate container 503a0b4fdcd8 build 30-Oct-2019 13:10:05 ---> 09bde4f39762 build 30-Oct-2019 13:10:05 Step 5/11 : COPY requirements.txt /home/clowder/ build 30-Oct-2019 13:10:05 ---> d4b268b716a1 build 30-Oct-2019 13:10:05 Step 6/11 : RUN pip install --upgrade pip build 30-Oct-2019 13:10:06 ---> Running in 7494d7a9f400 build 30-Oct-2019 13:10:08 Collecting pip build 30-Oct-2019 13:10:08 Downloading https://files.pythonhosted.org/packages/00/b6/9cfa56b4081ad13874b0c6f96af8ce16cfbc1cb06bedf8e9164ce5551ec1/pip-19.3.1-py2.py3-none-any.whl (1.4MB) build 30-Oct-2019 13:10:08 Installing collected packages: pip build 30-Oct-2019 13:10:08 Found existing installation: pip 8.1.1 build 30-Oct-2019 13:10:08 Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr build 30-Oct-2019 13:10:09 Successfully installed pip-19.3.1 build 30-Oct-2019 13:10:11 Removing intermediate container 7494d7a9f400 build 30-Oct-2019 13:10:11 ---> 6ad55a49d68b build 30-Oct-2019 13:10:11 Step 7/11 : RUN pip install -r /home/clowder/requirements.txt build 30-Oct-2019 13:10:12 ---> Running in 77205f4b629c build 30-Oct-2019 13:10:14 DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support build 30-Oct-2019 13:10:14 Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) build 30-Oct-2019 13:10:14 Collecting openpyxl==1.6.2 build 30-Oct-2019 13:10:14 Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) build 30-Oct-2019 13:10:14 Collecting pika==0.9.14 build 30-Oct-2019 13:10:14 Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) build 30-Oct-2019 13:10:15 Collecting pymongo==3.2.1 build 30-Oct-2019 13:10:15 Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) build 30-Oct-2019 13:10:16 Collecting pytz==2014.3 build 30-Oct-2019 13:10:16 Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) build 30-Oct-2019 13:10:17 Collecting requests==2.2.1 build 30-Oct-2019 13:10:17 Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) build 30-Oct-2019 13:10:17 Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) build 30-Oct-2019 13:10:17 Collecting xlrd==0.9.3 build 30-Oct-2019 13:10:17 Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) build 30-Oct-2019 13:10:18 Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd build 30-Oct-2019 13:10:18 Running setup.py install for openpyxl: started build 30-Oct-2019 13:10:18 Running setup.py install for openpyxl: finished with status 'done' build 30-Oct-2019 13:10:18 Found existing installation: pika 0.11.0 build 30-Oct-2019 13:10:18 Uninstalling pika-0.11.0: build 30-Oct-2019 13:10:18 Successfully uninstalled pika-0.11.0 build 30-Oct-2019 13:10:18 Running setup.py install for pika: started build 30-Oct-2019 13:10:18 Running setup.py install for pika: finished with status 'done' build 30-Oct-2019 13:10:18 Running setup.py install for pymongo: started build 30-Oct-2019 13:10:19 Running setup.py install for pymongo: finished with status 'done' build 30-Oct-2019 13:10:19 Running setup.py install for pytz: started build 30-Oct-2019 13:10:19 Running setup.py install for pytz: finished with status 'done' build 30-Oct-2019 13:10:19 Found existing installation: requests 2.18.4 build 30-Oct-2019 13:10:19 Uninstalling requests-2.18.4: build 30-Oct-2019 13:10:19 Successfully uninstalled requests-2.18.4 build 30-Oct-2019 13:10:20 Running setup.py install for xlrd: started build 30-Oct-2019 13:10:20 Running setup.py install for xlrd: finished with status 'done' build 30-Oct-2019 13:10:20 Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 build 30-Oct-2019 13:10:22 Removing intermediate container 77205f4b629c build 30-Oct-2019 13:10:22 ---> b23a889fb5ef build 30-Oct-2019 13:10:22 Step 8/11 : USER clowder build 30-Oct-2019 13:10:23 ---> Running in 72fde3ae624f build 30-Oct-2019 13:10:24 Removing intermediate container 72fde3ae624f build 30-Oct-2019 13:10:24 ---> 0081c1deacc3 build 30-Oct-2019 13:10:24 Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ build 30-Oct-2019 13:10:25 ---> 112a90c770ae build 30-Oct-2019 13:10:25 Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 30-Oct-2019 13:10:25 ---> Running in 85454020831a build 30-Oct-2019 13:10:26 Removing intermediate container 85454020831a build 30-Oct-2019 13:10:26 ---> 01cc47b2af0a build 30-Oct-2019 13:10:26 Step 11/11 : CMD ["extractor"] build 30-Oct-2019 13:10:26 ---> Running in 4cbf371a2c7a build 30-Oct-2019 13:10:27 Removing intermediate container 4cbf371a2c7a build 30-Oct-2019 13:10:27 ---> 8f717ec8fe03 build 30-Oct-2019 13:10:27 Successfully built 8f717ec8fe03 build 30-Oct-2019 13:10:27 Successfully tagged 24169:latest build 30-Oct-2019 13:10:27 The push refers to repository [docker.io/clowder/extractors-msc-phenotype] build 30-Oct-2019 13:10:27 c06e7f4e1121: Preparing build 30-Oct-2019 13:10:27 9c68c2118994: Preparing build 30-Oct-2019 13:10:27 15265e61b4b1: Preparing build 30-Oct-2019 13:10:27 577b2565da47: Preparing build 30-Oct-2019 13:10:27 0cdb02ac1d86: Preparing build 30-Oct-2019 13:10:27 f2297bdfc824: Preparing build 30-Oct-2019 13:10:27 0fbe2bcb1bf9: Preparing build 30-Oct-2019 13:10:27 59669fcdd5eb: Preparing build 30-Oct-2019 13:10:27 7f7a065d245a: Preparing build 30-Oct-2019 13:10:27 f96e6b25195f: Preparing build 30-Oct-2019 13:10:27 c56153825175: Preparing build 30-Oct-2019 13:10:27 ae620432889d: Preparing build 30-Oct-2019 13:10:27 a2022691bf95: Preparing build 30-Oct-2019 13:10:27 f2297bdfc824: Waiting build 30-Oct-2019 13:10:27 0fbe2bcb1bf9: Waiting build 30-Oct-2019 13:10:27 59669fcdd5eb: Waiting build 30-Oct-2019 13:10:27 7f7a065d245a: Waiting build 30-Oct-2019 13:10:27 f96e6b25195f: Waiting build 30-Oct-2019 13:10:27 ae620432889d: Waiting build 30-Oct-2019 13:10:27 a2022691bf95: Waiting build 30-Oct-2019 13:10:27 c56153825175: Waiting build 30-Oct-2019 13:10:28 0cdb02ac1d86: Layer already exists build 30-Oct-2019 13:10:28 f2297bdfc824: Layer already exists build 30-Oct-2019 13:10:28 0fbe2bcb1bf9: Layer already exists build 30-Oct-2019 13:10:28 59669fcdd5eb: Layer already exists build 30-Oct-2019 13:10:29 7f7a065d245a: Layer already exists build 30-Oct-2019 13:10:29 f96e6b25195f: Layer already exists build 30-Oct-2019 13:10:29 c56153825175: Layer already exists build 30-Oct-2019 13:10:29 ae620432889d: Layer already exists build 30-Oct-2019 13:10:29 a2022691bf95: Layer already exists build 30-Oct-2019 13:10:30 c06e7f4e1121: Pushed build 30-Oct-2019 13:10:30 9c68c2118994: Pushed build 30-Oct-2019 13:10:31 15265e61b4b1: Pushed build 30-Oct-2019 13:10:31 577b2565da47: Pushed build 30-Oct-2019 13:10:34 browndog_v0.2.0: digest: sha256:4e07e5826a6ed23371705ccb9dac773c8d6b606fcb128aa73ed3b2a9185b71a3 size: 3031 build 30-Oct-2019 13:10:34 The push refers to repository [docker.io/clowder/extractors-msc-phenotype] build 30-Oct-2019 13:10:35 c06e7f4e1121: Preparing build 30-Oct-2019 13:10:35 9c68c2118994: Preparing build 30-Oct-2019 13:10:35 15265e61b4b1: Preparing build 30-Oct-2019 13:10:35 577b2565da47: Preparing build 30-Oct-2019 13:10:35 0cdb02ac1d86: Preparing build 30-Oct-2019 13:10:35 f2297bdfc824: Preparing build 30-Oct-2019 13:10:35 0fbe2bcb1bf9: Preparing build 30-Oct-2019 13:10:35 59669fcdd5eb: Preparing build 30-Oct-2019 13:10:35 7f7a065d245a: Preparing build 30-Oct-2019 13:10:35 f96e6b25195f: Preparing build 30-Oct-2019 13:10:35 c56153825175: Preparing build 30-Oct-2019 13:10:35 ae620432889d: Preparing build 30-Oct-2019 13:10:35 a2022691bf95: Preparing build 30-Oct-2019 13:10:35 f96e6b25195f: Waiting build 30-Oct-2019 13:10:35 f2297bdfc824: Waiting build 30-Oct-2019 13:10:35 0fbe2bcb1bf9: Waiting build 30-Oct-2019 13:10:35 c56153825175: Waiting build 30-Oct-2019 13:10:35 ae620432889d: Waiting build 30-Oct-2019 13:10:35 59669fcdd5eb: Waiting build 30-Oct-2019 13:10:35 7f7a065d245a: Waiting build 30-Oct-2019 13:10:35 a2022691bf95: Waiting build 30-Oct-2019 13:10:35 c06e7f4e1121: Layer already exists build 30-Oct-2019 13:10:35 0cdb02ac1d86: Layer already exists build 30-Oct-2019 13:10:35 15265e61b4b1: Layer already exists build 30-Oct-2019 13:10:35 9c68c2118994: Layer already exists build 30-Oct-2019 13:10:35 577b2565da47: Layer already exists build 30-Oct-2019 13:10:35 f2297bdfc824: Layer already exists build 30-Oct-2019 13:10:35 59669fcdd5eb: Layer already exists build 30-Oct-2019 13:10:35 0fbe2bcb1bf9: Layer already exists build 30-Oct-2019 13:10:35 7f7a065d245a: Layer already exists build 30-Oct-2019 13:10:35 f96e6b25195f: Layer already exists build 30-Oct-2019 13:10:35 c56153825175: Layer already exists build 30-Oct-2019 13:10:35 ae620432889d: Layer already exists build 30-Oct-2019 13:10:35 a2022691bf95: Layer already exists build 30-Oct-2019 13:10:36 browndog_v0.3.0: digest: sha256:4e07e5826a6ed23371705ccb9dac773c8d6b606fcb128aa73ed3b2a9185b71a3 size: 3031 build 30-Oct-2019 13:10:36 The push refers to repository [docker.io/clowder/extractors-msc-phenotype] build 30-Oct-2019 13:10:36 c06e7f4e1121: Preparing build 30-Oct-2019 13:10:36 9c68c2118994: Preparing build 30-Oct-2019 13:10:36 15265e61b4b1: Preparing build 30-Oct-2019 13:10:36 577b2565da47: Preparing build 30-Oct-2019 13:10:36 0cdb02ac1d86: Preparing build 30-Oct-2019 13:10:36 f2297bdfc824: Preparing build 30-Oct-2019 13:10:36 0fbe2bcb1bf9: Preparing build 30-Oct-2019 13:10:36 59669fcdd5eb: Preparing build 30-Oct-2019 13:10:36 7f7a065d245a: Preparing build 30-Oct-2019 13:10:36 f96e6b25195f: Preparing build 30-Oct-2019 13:10:36 c56153825175: Preparing build 30-Oct-2019 13:10:36 ae620432889d: Preparing build 30-Oct-2019 13:10:36 a2022691bf95: Preparing build 30-Oct-2019 13:10:36 f2297bdfc824: Waiting build 30-Oct-2019 13:10:36 0fbe2bcb1bf9: Waiting build 30-Oct-2019 13:10:36 59669fcdd5eb: Waiting build 30-Oct-2019 13:10:36 7f7a065d245a: Waiting build 30-Oct-2019 13:10:36 f96e6b25195f: Waiting build 30-Oct-2019 13:10:36 c56153825175: Waiting build 30-Oct-2019 13:10:36 ae620432889d: Waiting build 30-Oct-2019 13:10:36 a2022691bf95: Waiting build 30-Oct-2019 13:10:36 0cdb02ac1d86: Layer already exists build 30-Oct-2019 13:10:36 577b2565da47: Layer already exists build 30-Oct-2019 13:10:36 15265e61b4b1: Layer already exists build 30-Oct-2019 13:10:36 c06e7f4e1121: Layer already exists build 30-Oct-2019 13:10:36 9c68c2118994: Layer already exists build 30-Oct-2019 13:10:37 0fbe2bcb1bf9: Layer already exists build 30-Oct-2019 13:10:37 7f7a065d245a: Layer already exists build 30-Oct-2019 13:10:37 f2297bdfc824: Layer already exists build 30-Oct-2019 13:10:37 f96e6b25195f: Layer already exists build 30-Oct-2019 13:10:37 59669fcdd5eb: Layer already exists build 30-Oct-2019 13:10:37 c56153825175: Layer already exists build 30-Oct-2019 13:10:37 ae620432889d: Layer already exists build 30-Oct-2019 13:10:37 a2022691bf95: Layer already exists build 30-Oct-2019 13:10:37 latest: digest: sha256:4e07e5826a6ed23371705ccb9dac773c8d6b606fcb128aa73ed3b2a9185b71a3 size: 3031 build 30-Oct-2019 13:10:37 Untagged: 24169:latest simple 30-Oct-2019 13:10:37 Finished task 'docker build' with result: Success simple 30-Oct-2019 13:10:37 Running post build plugin 'Docker Container Cleanup' simple 30-Oct-2019 13:10:37 Running post build plugin 'NCover Results Collector' simple 30-Oct-2019 13:10:37 Running post build plugin 'Clover Results Collector' simple 30-Oct-2019 13:10:37 Running post build plugin 'npm Cache Cleanup' simple 30-Oct-2019 13:10:37 Running post build plugin 'Artifact Copier' simple 30-Oct-2019 13:10:37 Finalising the build... simple 30-Oct-2019 13:10:37 Stopping timer. simple 30-Oct-2019 13:10:37 Build CATS-MSC-JOB1-43 completed. simple 30-Oct-2019 13:10:37 Running on server: post build plugin 'NCover Results Collector' simple 30-Oct-2019 13:10:37 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 30-Oct-2019 13:10:37 Running on server: post build plugin 'Clover Delta Calculator' simple 30-Oct-2019 13:10:37 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 30-Oct-2019 13:10:37 All post build plugins have finished simple 30-Oct-2019 13:10:37 Generating build results summary... simple 30-Oct-2019 13:10:37 Saving build results to disk... simple 30-Oct-2019 13:10:37 Logging substituted variables... simple 30-Oct-2019 13:10:37 Indexing build results... simple 30-Oct-2019 13:10:37 Finished building CATS-MSC-JOB1-43.