simple 13-Apr-2017 11:23:45 Build Clowder - extractors-msc - master - Default Job #3 (CATS-MSC1-JOB1-3) started building on agent buildserver-1.os.ncsa.edu simple 13-Apr-2017 11:23:45 Remote agent on host buildserver-1.os.ncsa.edu simple 13-Apr-2017 11:23:45 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC1-JOB1 simple 13-Apr-2017 11:23:45 Executing build Clowder - extractors-msc - master - Default Job #3 (CATS-MSC1-JOB1-3) simple 13-Apr-2017 11:23:45 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 13-Apr-2017 11:23:45 Updating source code to revision: 6aaab3692bc88bb1c0016521723c45399615c5f2 simple 13-Apr-2017 11:23:45 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC1-JOB1/.git'. simple 13-Apr-2017 11:23:45 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC1-JOB1/.git/ simple 13-Apr-2017 11:23:45 Fetching 'refs/heads/master' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git'. Will try to do a shallow fetch. simple 13-Apr-2017 11:23:45 Warning: Permanently added '[127.0.0.1]:45799' (RSA) to the list of known hosts. simple 13-Apr-2017 11:23:46 From ssh://127.0.0.1:45799/cats/extractors-msc simple 13-Apr-2017 11:23:46 * [new branch] master -> master simple 13-Apr-2017 11:23:46 Checking out revision 6aaab3692bc88bb1c0016521723c45399615c5f2. simple 13-Apr-2017 11:23:46 Already on 'master' simple 13-Apr-2017 11:23:46 Updated source code to revision: 6aaab3692bc88bb1c0016521723c45399615c5f2 simple 13-Apr-2017 11:23:46 Finished task 'Checkout Default Repository' with result: Success simple 13-Apr-2017 11:23:46 Running pre-build action: VCS Version Collector simple 13-Apr-2017 11:23:46 Starting task 'docker build' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 13-Apr-2017 11:23:46 Beginning to execute external process for build 'Clowder - extractors-msc - master - Default Job #3 (CATS-MSC1-JOB1-3)'\n ... running command line: \n/bin/sh docker.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC1-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=master\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_planRepository_1_branchDisplayName=master\nbamboo_repository_revision_number=6aaab3692bc88bb1c0016521723c45399615c5f2\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-MSC1-JOB1-3\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_planRepository_1_name=extractors-msc\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC1-JOB1\nbamboo_buildKey=CATS-MSC1-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=master\nbamboo_repository_127172629_branch_name=master\nbamboo_planRepository_name=extractors-msc\nbamboo_buildNumber=3\nbamboo_repository_127172629_git_username=\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-MSC1-JOB1-3\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git\nbamboo_agentId=140673027\nbamboo_planName=Clowder - extractors-msc - master\nbamboo_shortPlanKey=MSC1\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_repository_127172629_git_branch=master\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_repository_127172629_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git\nbamboo_repository_127172629_name=extractors-msc\nbamboo_planRepository_revision=6aaab3692bc88bb1c0016521723c45399615c5f2\nbamboo_repository_previous_revision_number=85e47c135cd2d896597c8dd58362bfc12d4463d0\nbamboo_buildTimeStamp=2017-04-13T11:23:45.044-05:00\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_planRepository_previousRevision=85e47c135cd2d896597c8dd58362bfc12d4463d0\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_buildResultKey=CATS-MSC1-JOB1-3\nbamboo_repository_git_branch=master\nbamboo_repository_branch_name=master\nbamboo_buildPlanName=Clowder - extractors-msc - master - Default Job\nbamboo_planRepository_1_revision=6aaab3692bc88bb1c0016521723c45399615c5f2\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=extractors-msc\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_branch=master\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_planRepository_1_previousRevision=85e47c135cd2d896597c8dd58362bfc12d4463d0\nbamboo_repository_git_username=\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_planRepository_branchDisplayName=master\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=master\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_repository_127172629_previous_revision_number=85e47c135cd2d896597c8dd58362bfc12d4463d0\nbamboo_capability_system_hostname=buildserver-1\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-126976039\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_planRepository_type=bbserver\nbamboo_planRepository_1_username=\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC1-JOB1\nbamboo_planKey=CATS-MSC1\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_1_branchName=master\nbamboo_repository_127172629_revision_number=6aaab3692bc88bb1c0016521723c45399615c5f2\n build 13-Apr-2017 11:23:47 Sending build context to Docker daemon 2.284 MB build 13-Apr-2017 11:23:47 build 13-Apr-2017 11:23:47 Step 1/11 : FROM clowder/pyclowder:1 build 13-Apr-2017 11:23:47 ---> 2dd17798784b build 13-Apr-2017 11:23:47 Step 2/11 : MAINTAINER Rob Kooper build 13-Apr-2017 11:23:47 ---> Using cache build 13-Apr-2017 11:23:47 ---> 25d6b5080f64 build 13-Apr-2017 11:23:47 Step 3/11 : VOLUME /matlab build 13-Apr-2017 11:23:47 ---> Using cache build 13-Apr-2017 11:23:47 ---> ede0a0d3c320 build 13-Apr-2017 11:23:47 Step 4/11 : ENV RABBITMQ_URI "" RABBITMQ_EXCHANGE "clowder" RABBITMQ_VHOST "%2F" RABBITMQ_QUEUE "ncsa.msc.diagnosis" MATLAB_BINARY "/matlab/bin/matlab" MAIN_SCRIPT "diagnosis.py" build 13-Apr-2017 11:23:47 ---> Using cache build 13-Apr-2017 11:23:47 ---> e41d78828e2e build 13-Apr-2017 11:23:47 Step 5/11 : USER root build 13-Apr-2017 11:23:47 ---> Using cache build 13-Apr-2017 11:23:47 ---> d0c45edca894 build 13-Apr-2017 11:23:47 Step 6/11 : RUN pip install --upgrade pip build 13-Apr-2017 11:23:47 ---> Using cache build 13-Apr-2017 11:23:47 ---> d21763e96731 build 13-Apr-2017 11:23:47 Step 7/11 : RUN apt-get -qq -y update && apt-get -y install libxext6 libxmu6 libxt6 wget && mkdir -p /matlab && rm -rf /var/lib/apt/lists/* build 13-Apr-2017 11:23:47 ---> Using cache build 13-Apr-2017 11:23:47 ---> fbbb991f9177 build 13-Apr-2017 11:23:47 Step 8/11 : USER clowder build 13-Apr-2017 11:23:47 ---> Using cache build 13-Apr-2017 11:23:47 ---> 0e2b3727481d build 13-Apr-2017 11:23:47 Step 9/11 : COPY entrypoint.sh *.py *.m data/*.mat *.json /home/clowder/ build 13-Apr-2017 11:23:48 ---> 9d05d0a68672 build 13-Apr-2017 11:23:48 Removing intermediate container 2b81eb939f5d build 13-Apr-2017 11:23:48 Step 10/11 : ENTRYPOINT /home/clowder/entrypoint.sh build 13-Apr-2017 11:23:48 ---> Running in 3d71baa6ac86 build 13-Apr-2017 11:23:48 ---> 59143dc46d67 build 13-Apr-2017 11:23:48 Removing intermediate container 3d71baa6ac86 build 13-Apr-2017 11:23:48 Step 11/11 : CMD extractor build 13-Apr-2017 11:23:48 ---> Running in 489aa01f9b5d build 13-Apr-2017 11:23:48 ---> 9e981d09e7cd build 13-Apr-2017 11:23:49 Removing intermediate container 489aa01f9b5d build 13-Apr-2017 11:23:49 Successfully built 9e981d09e7cd build 13-Apr-2017 11:23:49 The push refers to a repository [docker.io/clowder/extractors-msc-kidney] build 13-Apr-2017 11:23:49 e14b7f0f2b41: Preparing build 13-Apr-2017 11:23:49 f7012088fb0f: Preparing build 13-Apr-2017 11:23:49 fad976092c90: Preparing build 13-Apr-2017 11:23:49 5e269aa11a2f: Preparing build 13-Apr-2017 11:23:49 7d760664bbad: Preparing build 13-Apr-2017 11:23:49 a2688f6622a7: Preparing build 13-Apr-2017 11:23:49 e24a372680fc: Preparing build 13-Apr-2017 11:23:49 5eb5bd4c5014: Preparing build 13-Apr-2017 11:23:49 d195a7a18c70: Preparing build 13-Apr-2017 11:23:49 af605e724c5a: Preparing build 13-Apr-2017 11:23:49 a2688f6622a7: Waiting build 13-Apr-2017 11:23:49 59f161c3069d: Preparing build 13-Apr-2017 11:23:49 4f03495a4d7d: Preparing build 13-Apr-2017 11:23:49 e24a372680fc: Waiting build 13-Apr-2017 11:23:49 af605e724c5a: Waiting build 13-Apr-2017 11:23:49 5eb5bd4c5014: Waiting build 13-Apr-2017 11:23:49 d195a7a18c70: Waiting build 13-Apr-2017 11:23:49 4f03495a4d7d: Waiting build 13-Apr-2017 11:23:49 5e269aa11a2f: Mounted from clowder/extractors-geo-tiff build 13-Apr-2017 11:23:50 7d760664bbad: Mounted from clowder/extractors-geo-tiff build 13-Apr-2017 11:23:50 a2688f6622a7: Mounted from clowder/extractors-geo-tiff build 13-Apr-2017 11:23:50 e24a372680fc: Mounted from clowder/extractors-geo-tiff build 13-Apr-2017 11:23:50 5eb5bd4c5014: Mounted from clowder/extractors-geo-tiff build 13-Apr-2017 11:23:51 d195a7a18c70: Mounted from clowder/extractors-geo-tiff build 13-Apr-2017 11:23:51 e14b7f0f2b41: Pushed build 13-Apr-2017 11:23:51 f7012088fb0f: Pushed build 13-Apr-2017 11:23:52 59f161c3069d: Mounted from clowder/extractors-geo-tiff build 13-Apr-2017 11:23:52 4f03495a4d7d: Mounted from clowder/extractors-geo-tiff build 13-Apr-2017 11:23:52 fad976092c90: Pushed build 13-Apr-2017 11:23:54 af605e724c5a: Mounted from clowder/extractors-geo-tiff build 13-Apr-2017 11:23:57 master: digest: sha256:43972a77b756b511332846697c3628c07d35d8617ae36ae34533b9df5407ef39 size: 2826 build 13-Apr-2017 11:23:57 The push refers to a repository [docker.io/clowder/extractors-msc-kidney] build 13-Apr-2017 11:23:57 e14b7f0f2b41: Preparing build 13-Apr-2017 11:23:57 f7012088fb0f: Preparing build 13-Apr-2017 11:23:57 fad976092c90: Preparing build 13-Apr-2017 11:23:57 5e269aa11a2f: Preparing build 13-Apr-2017 11:23:57 7d760664bbad: Preparing build 13-Apr-2017 11:23:57 a2688f6622a7: Preparing build 13-Apr-2017 11:23:57 e24a372680fc: Preparing build 13-Apr-2017 11:23:57 5eb5bd4c5014: Preparing build 13-Apr-2017 11:23:57 d195a7a18c70: Preparing build 13-Apr-2017 11:23:57 af605e724c5a: Preparing build 13-Apr-2017 11:23:57 59f161c3069d: Preparing build 13-Apr-2017 11:23:57 4f03495a4d7d: Preparing build 13-Apr-2017 11:23:57 d195a7a18c70: Waiting build 13-Apr-2017 11:23:57 af605e724c5a: Waiting build 13-Apr-2017 11:23:57 a2688f6622a7: Waiting build 13-Apr-2017 11:23:57 e24a372680fc: Waiting build 13-Apr-2017 11:23:57 5eb5bd4c5014: Waiting build 13-Apr-2017 11:23:57 4f03495a4d7d: Waiting build 13-Apr-2017 11:23:57 7d760664bbad: Layer already exists build 13-Apr-2017 11:23:57 fad976092c90: Layer already exists build 13-Apr-2017 11:23:57 f7012088fb0f: Layer already exists build 13-Apr-2017 11:23:57 5e269aa11a2f: Layer already exists build 13-Apr-2017 11:23:57 e14b7f0f2b41: Layer already exists build 13-Apr-2017 11:23:57 af605e724c5a: Layer already exists build 13-Apr-2017 11:23:57 e24a372680fc: Layer already exists build 13-Apr-2017 11:23:57 d195a7a18c70: Layer already exists build 13-Apr-2017 11:23:57 a2688f6622a7: Layer already exists build 13-Apr-2017 11:23:57 5eb5bd4c5014: Layer already exists build 13-Apr-2017 11:23:58 59f161c3069d: Layer already exists build 13-Apr-2017 11:23:58 4f03495a4d7d: Layer already exists build 13-Apr-2017 11:23:58 latest: digest: sha256:43972a77b756b511332846697c3628c07d35d8617ae36ae34533b9df5407ef39 size: 2826 build 13-Apr-2017 11:23:58 Untagged: 13148:latest build 13-Apr-2017 11:23:58 Sending build context to Docker daemon 67.07 kB build 13-Apr-2017 11:23:58 build 13-Apr-2017 11:23:58 Step 1/11 : FROM clowder/pyclowder:1 build 13-Apr-2017 11:23:58 ---> 2dd17798784b build 13-Apr-2017 11:23:58 Step 2/11 : MAINTAINER Yan Zhao build 13-Apr-2017 11:23:58 ---> Using cache build 13-Apr-2017 11:23:58 ---> bc9047907227 build 13-Apr-2017 11:23:58 Step 3/11 : ENV RABBITMQ_URI "" RABBITMQ_EXCHANGE "clowder" RABBITMQ_VHOST "%2F" RABBITMQ_QUEUE "ncsa.msc.IsletExtractor" MONGO_URI "" DB_USERNAME "" DB_PASSWORD "" MAIN_SCRIPT "extractor-Islet.py" build 13-Apr-2017 11:23:58 ---> Using cache build 13-Apr-2017 11:23:58 ---> 9ceb63774634 build 13-Apr-2017 11:23:58 Step 4/11 : USER root build 13-Apr-2017 11:23:58 ---> Using cache build 13-Apr-2017 11:23:58 ---> ba9cdcd753c0 build 13-Apr-2017 11:23:58 Step 5/11 : COPY requirements.txt /home/clowder/ build 13-Apr-2017 11:23:58 ---> Using cache build 13-Apr-2017 11:23:58 ---> db24dd66192d build 13-Apr-2017 11:23:58 Step 6/11 : RUN pip install --upgrade pip build 13-Apr-2017 11:23:58 ---> Using cache build 13-Apr-2017 11:23:58 ---> d5975c0da0d8 build 13-Apr-2017 11:23:58 Step 7/11 : RUN pip install -r /home/clowder/requirements.txt build 13-Apr-2017 11:23:58 ---> Using cache build 13-Apr-2017 11:23:58 ---> 9dc5b4d4fd4c build 13-Apr-2017 11:23:58 Step 8/11 : USER clowder build 13-Apr-2017 11:23:58 ---> Using cache build 13-Apr-2017 11:23:58 ---> 4574e4c8d885 build 13-Apr-2017 11:23:58 Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ build 13-Apr-2017 11:23:59 ---> c1d774007e13 build 13-Apr-2017 11:23:59 Removing intermediate container 58be289dc481 build 13-Apr-2017 11:23:59 Step 10/11 : ENTRYPOINT /home/clowder/entrypoint.sh build 13-Apr-2017 11:23:59 ---> Running in 18f9dd2363c5 build 13-Apr-2017 11:23:59 ---> a9304997b6b0 build 13-Apr-2017 11:23:59 Removing intermediate container 18f9dd2363c5 build 13-Apr-2017 11:23:59 Step 11/11 : CMD extractor build 13-Apr-2017 11:23:59 ---> Running in ff5e99d9c020 build 13-Apr-2017 11:23:59 ---> 784fa9def69a build 13-Apr-2017 11:23:59 Removing intermediate container ff5e99d9c020 build 13-Apr-2017 11:23:59 Successfully built 784fa9def69a build 13-Apr-2017 11:23:59 The push refers to a repository [docker.io/clowder/extractors-msc-islet] build 13-Apr-2017 11:24:00 1b67db9566db: Preparing build 13-Apr-2017 11:24:00 8e498a665c7d: Preparing build 13-Apr-2017 11:24:00 7c7c71d2f9d6: Preparing build 13-Apr-2017 11:24:00 327cd9a955a7: Preparing build 13-Apr-2017 11:24:00 5e269aa11a2f: Preparing build 13-Apr-2017 11:24:00 7d760664bbad: Preparing build 13-Apr-2017 11:24:00 a2688f6622a7: Preparing build 13-Apr-2017 11:24:00 e24a372680fc: Preparing build 13-Apr-2017 11:24:00 5eb5bd4c5014: Preparing build 13-Apr-2017 11:24:00 d195a7a18c70: Preparing build 13-Apr-2017 11:24:00 af605e724c5a: Preparing build 13-Apr-2017 11:24:00 59f161c3069d: Preparing build 13-Apr-2017 11:24:00 4f03495a4d7d: Preparing build 13-Apr-2017 11:24:00 5eb5bd4c5014: Waiting build 13-Apr-2017 11:24:00 d195a7a18c70: Waiting build 13-Apr-2017 11:24:00 af605e724c5a: Waiting build 13-Apr-2017 11:24:00 59f161c3069d: Waiting build 13-Apr-2017 11:24:00 4f03495a4d7d: Waiting build 13-Apr-2017 11:24:00 e24a372680fc: Waiting build 13-Apr-2017 11:24:00 a2688f6622a7: Waiting build 13-Apr-2017 11:24:00 5e269aa11a2f: Mounted from clowder/extractors-msc-kidney build 13-Apr-2017 11:24:01 7d760664bbad: Mounted from clowder/extractors-msc-kidney build 13-Apr-2017 11:24:01 1b67db9566db: Pushed build 13-Apr-2017 11:24:01 a2688f6622a7: Mounted from clowder/extractors-msc-kidney build 13-Apr-2017 11:24:01 e24a372680fc: Mounted from clowder/extractors-msc-kidney build 13-Apr-2017 11:24:01 327cd9a955a7: Pushed build 13-Apr-2017 11:24:02 d195a7a18c70: Mounted from clowder/extractors-msc-kidney build 13-Apr-2017 11:24:02 5eb5bd4c5014: Mounted from clowder/extractors-msc-kidney build 13-Apr-2017 11:24:02 af605e724c5a: Mounted from clowder/extractors-msc-kidney build 13-Apr-2017 11:24:02 59f161c3069d: Mounted from clowder/extractors-msc-kidney build 13-Apr-2017 11:24:02 4f03495a4d7d: Mounted from clowder/extractors-msc-kidney build 13-Apr-2017 11:24:03 8e498a665c7d: Pushed build 13-Apr-2017 11:24:03 7c7c71d2f9d6: Pushed build 13-Apr-2017 11:24:06 master: digest: sha256:fdc07b39f1b2ff11d947eed7e38fbd710b48686ab4e4f3f8571bcbf89c1ab2d3 size: 3031 build 13-Apr-2017 11:24:06 The push refers to a repository [docker.io/clowder/extractors-msc-islet] build 13-Apr-2017 11:24:06 1b67db9566db: Preparing build 13-Apr-2017 11:24:06 8e498a665c7d: Preparing build 13-Apr-2017 11:24:06 7c7c71d2f9d6: Preparing build 13-Apr-2017 11:24:06 327cd9a955a7: Preparing build 13-Apr-2017 11:24:06 5e269aa11a2f: Preparing build 13-Apr-2017 11:24:06 7d760664bbad: Preparing build 13-Apr-2017 11:24:06 a2688f6622a7: Preparing build 13-Apr-2017 11:24:06 e24a372680fc: Preparing build 13-Apr-2017 11:24:06 5eb5bd4c5014: Preparing build 13-Apr-2017 11:24:06 d195a7a18c70: Preparing build 13-Apr-2017 11:24:06 af605e724c5a: Preparing build 13-Apr-2017 11:24:06 59f161c3069d: Preparing build 13-Apr-2017 11:24:06 4f03495a4d7d: Preparing build 13-Apr-2017 11:24:06 e24a372680fc: Waiting build 13-Apr-2017 11:24:06 5eb5bd4c5014: Waiting build 13-Apr-2017 11:24:06 d195a7a18c70: Waiting build 13-Apr-2017 11:24:06 af605e724c5a: Waiting build 13-Apr-2017 11:24:06 59f161c3069d: Waiting build 13-Apr-2017 11:24:06 4f03495a4d7d: Waiting build 13-Apr-2017 11:24:06 7d760664bbad: Waiting build 13-Apr-2017 11:24:06 a2688f6622a7: Waiting build 13-Apr-2017 11:24:06 8e498a665c7d: Layer already exists build 13-Apr-2017 11:24:06 5e269aa11a2f: Layer already exists build 13-Apr-2017 11:24:06 1b67db9566db: Layer already exists build 13-Apr-2017 11:24:06 327cd9a955a7: Layer already exists build 13-Apr-2017 11:24:06 7c7c71d2f9d6: Layer already exists build 13-Apr-2017 11:24:06 a2688f6622a7: Layer already exists build 13-Apr-2017 11:24:06 e24a372680fc: Layer already exists build 13-Apr-2017 11:24:06 7d760664bbad: Layer already exists build 13-Apr-2017 11:24:06 d195a7a18c70: Layer already exists build 13-Apr-2017 11:24:06 5eb5bd4c5014: Layer already exists build 13-Apr-2017 11:24:06 af605e724c5a: Layer already exists build 13-Apr-2017 11:24:06 59f161c3069d: Layer already exists build 13-Apr-2017 11:24:06 4f03495a4d7d: Layer already exists build 13-Apr-2017 11:24:07 latest: digest: sha256:fdc07b39f1b2ff11d947eed7e38fbd710b48686ab4e4f3f8571bcbf89c1ab2d3 size: 3031 build 13-Apr-2017 11:24:07 Untagged: 13148:latest build 13-Apr-2017 11:24:07 Sending build context to Docker daemon 66.05 kB build 13-Apr-2017 11:24:07 build 13-Apr-2017 11:24:07 Step 1/11 : FROM clowder/pyclowder:1 build 13-Apr-2017 11:24:07 ---> 2dd17798784b build 13-Apr-2017 11:24:07 Step 2/11 : MAINTAINER Yan Zhao build 13-Apr-2017 11:24:07 ---> Using cache build 13-Apr-2017 11:24:07 ---> bc9047907227 build 13-Apr-2017 11:24:07 Step 3/11 : ENV RABBITMQ_URI "" RABBITMQ_EXCHANGE "clowder" RABBITMQ_VHOST "%2F" RABBITMQ_QUEUE "ncsa.msc.ChemCBCExtractor" MONGO_URI "" DB_USERNAME "" DB_PASSWORD "" MAIN_SCRIPT "extractor-Chem.py" build 13-Apr-2017 11:24:07 ---> Using cache build 13-Apr-2017 11:24:07 ---> f9533b555a2c build 13-Apr-2017 11:24:07 Step 4/11 : USER root build 13-Apr-2017 11:24:07 ---> Using cache build 13-Apr-2017 11:24:07 ---> e895b7bbafa3 build 13-Apr-2017 11:24:07 Step 5/11 : COPY requirements.txt /home/clowder/ build 13-Apr-2017 11:24:07 ---> Using cache build 13-Apr-2017 11:24:07 ---> bd4cac8f5785 build 13-Apr-2017 11:24:07 Step 6/11 : RUN pip install --upgrade pip build 13-Apr-2017 11:24:07 ---> Using cache build 13-Apr-2017 11:24:07 ---> 3a830dd14194 build 13-Apr-2017 11:24:07 Step 7/11 : RUN pip install -r /home/clowder/requirements.txt build 13-Apr-2017 11:24:07 ---> Using cache build 13-Apr-2017 11:24:07 ---> a3fab8f49c15 build 13-Apr-2017 11:24:07 Step 8/11 : USER clowder build 13-Apr-2017 11:24:07 ---> Using cache build 13-Apr-2017 11:24:07 ---> 3b2a96fa0433 build 13-Apr-2017 11:24:07 Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ build 13-Apr-2017 11:24:08 ---> 180926de3ff2 build 13-Apr-2017 11:24:08 Removing intermediate container bf88c9195515 build 13-Apr-2017 11:24:08 Step 10/11 : ENTRYPOINT /home/clowder/entrypoint.sh build 13-Apr-2017 11:24:08 ---> Running in c4ceadb94f8c build 13-Apr-2017 11:24:08 ---> b06a54f1e451 build 13-Apr-2017 11:24:08 Removing intermediate container c4ceadb94f8c build 13-Apr-2017 11:24:08 Step 11/11 : CMD extractor build 13-Apr-2017 11:24:08 ---> Running in 9b03b09fc4ac build 13-Apr-2017 11:24:08 ---> d3b265d4848a build 13-Apr-2017 11:24:08 Removing intermediate container 9b03b09fc4ac build 13-Apr-2017 11:24:08 Successfully built d3b265d4848a build 13-Apr-2017 11:24:08 The push refers to a repository [docker.io/clowder/extractors-msc-chemcbc] build 13-Apr-2017 11:24:08 547f2efd0d66: Preparing build 13-Apr-2017 11:24:08 b55df840f97d: Preparing build 13-Apr-2017 11:24:08 ad97842ae705: Preparing build 13-Apr-2017 11:24:08 a0145b94122b: Preparing build 13-Apr-2017 11:24:08 5e269aa11a2f: Preparing build 13-Apr-2017 11:24:08 7d760664bbad: Preparing build 13-Apr-2017 11:24:08 a2688f6622a7: Preparing build 13-Apr-2017 11:24:08 e24a372680fc: Preparing build 13-Apr-2017 11:24:08 5eb5bd4c5014: Preparing build 13-Apr-2017 11:24:08 d195a7a18c70: Preparing build 13-Apr-2017 11:24:08 af605e724c5a: Preparing build 13-Apr-2017 11:24:08 59f161c3069d: Preparing build 13-Apr-2017 11:24:08 4f03495a4d7d: Preparing build 13-Apr-2017 11:24:08 7d760664bbad: Waiting build 13-Apr-2017 11:24:08 a2688f6622a7: Waiting build 13-Apr-2017 11:24:08 e24a372680fc: Waiting build 13-Apr-2017 11:24:08 5eb5bd4c5014: Waiting build 13-Apr-2017 11:24:08 d195a7a18c70: Waiting build 13-Apr-2017 11:24:08 af605e724c5a: Waiting build 13-Apr-2017 11:24:08 59f161c3069d: Waiting build 13-Apr-2017 11:24:08 4f03495a4d7d: Waiting build 13-Apr-2017 11:24:09 5e269aa11a2f: Mounted from clowder/extractors-msc-islet build 13-Apr-2017 11:24:10 7d760664bbad: Mounted from clowder/extractors-msc-islet build 13-Apr-2017 11:24:10 a2688f6622a7: Mounted from clowder/extractors-msc-islet build 13-Apr-2017 11:24:10 547f2efd0d66: Pushed build 13-Apr-2017 11:24:10 a0145b94122b: Pushed build 13-Apr-2017 11:24:11 e24a372680fc: Mounted from clowder/extractors-msc-islet build 13-Apr-2017 11:24:11 d195a7a18c70: Mounted from clowder/extractors-msc-islet build 13-Apr-2017 11:24:11 b55df840f97d: Pushed build 13-Apr-2017 11:24:11 5eb5bd4c5014: Mounted from clowder/extractors-msc-islet build 13-Apr-2017 11:24:11 af605e724c5a: Mounted from clowder/extractors-msc-islet build 13-Apr-2017 11:24:11 59f161c3069d: Mounted from clowder/extractors-msc-islet build 13-Apr-2017 11:24:11 ad97842ae705: Pushed build 13-Apr-2017 11:24:11 4f03495a4d7d: Mounted from clowder/extractors-msc-islet build 13-Apr-2017 11:24:13 master: digest: sha256:ff341a4c44e6956d0d1d2429595b337f8503d8f13c8b7761978ada9feed1aa3b size: 3031 build 13-Apr-2017 11:24:13 The push refers to a repository [docker.io/clowder/extractors-msc-chemcbc] build 13-Apr-2017 11:24:13 547f2efd0d66: Preparing build 13-Apr-2017 11:24:13 b55df840f97d: Preparing build 13-Apr-2017 11:24:13 ad97842ae705: Preparing build 13-Apr-2017 11:24:13 a0145b94122b: Preparing build 13-Apr-2017 11:24:13 5e269aa11a2f: Preparing build 13-Apr-2017 11:24:13 7d760664bbad: Preparing build 13-Apr-2017 11:24:13 a2688f6622a7: Preparing build 13-Apr-2017 11:24:13 e24a372680fc: Preparing build 13-Apr-2017 11:24:13 5eb5bd4c5014: Preparing build 13-Apr-2017 11:24:13 d195a7a18c70: Preparing build 13-Apr-2017 11:24:13 af605e724c5a: Preparing build 13-Apr-2017 11:24:13 59f161c3069d: Preparing build 13-Apr-2017 11:24:13 4f03495a4d7d: Preparing build 13-Apr-2017 11:24:13 7d760664bbad: Waiting build 13-Apr-2017 11:24:13 a2688f6622a7: Waiting build 13-Apr-2017 11:24:13 e24a372680fc: Waiting build 13-Apr-2017 11:24:13 5eb5bd4c5014: Waiting build 13-Apr-2017 11:24:13 d195a7a18c70: Waiting build 13-Apr-2017 11:24:13 af605e724c5a: Waiting build 13-Apr-2017 11:24:13 59f161c3069d: Waiting build 13-Apr-2017 11:24:14 5e269aa11a2f: Layer already exists build 13-Apr-2017 11:24:14 ad97842ae705: Layer already exists build 13-Apr-2017 11:24:14 b55df840f97d: Layer already exists build 13-Apr-2017 11:24:14 547f2efd0d66: Layer already exists build 13-Apr-2017 11:24:14 a0145b94122b: Layer already exists build 13-Apr-2017 11:24:14 7d760664bbad: Layer already exists build 13-Apr-2017 11:24:14 a2688f6622a7: Layer already exists build 13-Apr-2017 11:24:14 e24a372680fc: Layer already exists build 13-Apr-2017 11:24:14 5eb5bd4c5014: Layer already exists build 13-Apr-2017 11:24:14 d195a7a18c70: Layer already exists build 13-Apr-2017 11:24:14 af605e724c5a: Layer already exists build 13-Apr-2017 11:24:14 59f161c3069d: Layer already exists build 13-Apr-2017 11:24:14 4f03495a4d7d: Layer already exists build 13-Apr-2017 11:24:14 latest: digest: sha256:ff341a4c44e6956d0d1d2429595b337f8503d8f13c8b7761978ada9feed1aa3b size: 3031 build 13-Apr-2017 11:24:15 Untagged: 13148:latest build 13-Apr-2017 11:24:15 Sending build context to Docker daemon 198.1 kB build 13-Apr-2017 11:24:15 build 13-Apr-2017 11:24:15 Step 1/11 : FROM clowder/pyclowder:1 build 13-Apr-2017 11:24:15 ---> 2dd17798784b build 13-Apr-2017 11:24:15 Step 2/11 : MAINTAINER Yan Zhao build 13-Apr-2017 11:24:15 ---> Using cache build 13-Apr-2017 11:24:15 ---> bc9047907227 build 13-Apr-2017 11:24:15 Step 3/11 : ENV RABBITMQ_URI "" RABBITMQ_EXCHANGE "clowder" RABBITMQ_VHOST "%2F" RABBITMQ_QUEUE "ncsa.msc.MonitorExtractor" MONGO_URI "" DB_USERNAME "" DB_PASSWORD "" MAIN_SCRIPT "extractor-Monitor.py" build 13-Apr-2017 11:24:15 ---> Using cache build 13-Apr-2017 11:24:15 ---> b661a0041567 build 13-Apr-2017 11:24:15 Step 4/11 : USER root build 13-Apr-2017 11:24:15 ---> Using cache build 13-Apr-2017 11:24:15 ---> e7bc66966044 build 13-Apr-2017 11:24:15 Step 5/11 : COPY requirements.txt /home/clowder/ build 13-Apr-2017 11:24:15 ---> Using cache build 13-Apr-2017 11:24:15 ---> 3ec5ab59c61d build 13-Apr-2017 11:24:15 Step 6/11 : RUN pip install --upgrade pip build 13-Apr-2017 11:24:15 ---> Using cache build 13-Apr-2017 11:24:15 ---> 89e0ef8225af build 13-Apr-2017 11:24:15 Step 7/11 : RUN pip install -r /home/clowder/requirements.txt build 13-Apr-2017 11:24:15 ---> Using cache build 13-Apr-2017 11:24:15 ---> 6170f134661c build 13-Apr-2017 11:24:15 Step 8/11 : USER clowder build 13-Apr-2017 11:24:15 ---> Using cache build 13-Apr-2017 11:24:15 ---> d72ea4deba96 build 13-Apr-2017 11:24:15 Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ build 13-Apr-2017 11:24:15 ---> 0267abc16a58 build 13-Apr-2017 11:24:15 Removing intermediate container dbd71df7ea1f build 13-Apr-2017 11:24:15 Step 10/11 : ENTRYPOINT /home/clowder/entrypoint.sh build 13-Apr-2017 11:24:16 ---> Running in b55f23cdab57 build 13-Apr-2017 11:24:16 ---> ee0620fca904 build 13-Apr-2017 11:24:16 Removing intermediate container b55f23cdab57 build 13-Apr-2017 11:24:16 Step 11/11 : CMD extractor build 13-Apr-2017 11:24:16 ---> Running in a59187e3a5db build 13-Apr-2017 11:24:16 ---> 776a615243cb build 13-Apr-2017 11:24:16 Removing intermediate container a59187e3a5db build 13-Apr-2017 11:24:16 Successfully built 776a615243cb build 13-Apr-2017 11:24:16 The push refers to a repository [docker.io/clowder/extractors-msc-monitor] build 13-Apr-2017 11:24:16 df9d07df8405: Preparing build 13-Apr-2017 11:24:16 1687def61c7d: Preparing build 13-Apr-2017 11:24:16 2df1b7187a19: Preparing build 13-Apr-2017 11:24:16 de586ccf9c4a: Preparing build 13-Apr-2017 11:24:16 5e269aa11a2f: Preparing build 13-Apr-2017 11:24:16 7d760664bbad: Preparing build 13-Apr-2017 11:24:16 a2688f6622a7: Preparing build 13-Apr-2017 11:24:16 e24a372680fc: Preparing build 13-Apr-2017 11:24:16 5eb5bd4c5014: Preparing build 13-Apr-2017 11:24:16 d195a7a18c70: Preparing build 13-Apr-2017 11:24:16 af605e724c5a: Preparing build 13-Apr-2017 11:24:16 59f161c3069d: Preparing build 13-Apr-2017 11:24:16 4f03495a4d7d: Preparing build 13-Apr-2017 11:24:16 5eb5bd4c5014: Waiting build 13-Apr-2017 11:24:16 7d760664bbad: Waiting build 13-Apr-2017 11:24:16 a2688f6622a7: Waiting build 13-Apr-2017 11:24:16 e24a372680fc: Waiting build 13-Apr-2017 11:24:16 d195a7a18c70: Waiting build 13-Apr-2017 11:24:16 59f161c3069d: Waiting build 13-Apr-2017 11:24:16 af605e724c5a: Waiting build 13-Apr-2017 11:24:16 4f03495a4d7d: Waiting build 13-Apr-2017 11:24:17 5e269aa11a2f: Mounted from clowder/extractors-msc-chemcbc build 13-Apr-2017 11:24:17 7d760664bbad: Mounted from clowder/extractors-msc-chemcbc build 13-Apr-2017 11:24:18 a2688f6622a7: Mounted from clowder/extractors-msc-chemcbc build 13-Apr-2017 11:24:18 df9d07df8405: Pushed build 13-Apr-2017 11:24:18 de586ccf9c4a: Pushed build 13-Apr-2017 11:24:18 5eb5bd4c5014: Mounted from clowder/extractors-msc-chemcbc build 13-Apr-2017 11:24:18 e24a372680fc: Mounted from clowder/extractors-msc-chemcbc build 13-Apr-2017 11:24:19 2df1b7187a19: Pushed build 13-Apr-2017 11:24:19 d195a7a18c70: Mounted from clowder/extractors-msc-chemcbc build 13-Apr-2017 11:24:19 59f161c3069d: Mounted from clowder/extractors-msc-chemcbc build 13-Apr-2017 11:24:19 af605e724c5a: Mounted from clowder/extractors-msc-chemcbc build 13-Apr-2017 11:24:19 1687def61c7d: Pushed build 13-Apr-2017 11:24:19 4f03495a4d7d: Mounted from clowder/extractors-msc-chemcbc build 13-Apr-2017 11:24:21 master: digest: sha256:70ce8595532dde51de7778847162fbbc8ab8ce320f2e302590a2ac72e207b92a size: 3031 build 13-Apr-2017 11:24:21 The push refers to a repository [docker.io/clowder/extractors-msc-monitor] build 13-Apr-2017 11:24:21 df9d07df8405: Preparing build 13-Apr-2017 11:24:21 1687def61c7d: Preparing build 13-Apr-2017 11:24:21 2df1b7187a19: Preparing build 13-Apr-2017 11:24:21 de586ccf9c4a: Preparing build 13-Apr-2017 11:24:21 5e269aa11a2f: Preparing build 13-Apr-2017 11:24:21 7d760664bbad: Preparing build 13-Apr-2017 11:24:21 a2688f6622a7: Preparing build 13-Apr-2017 11:24:21 e24a372680fc: Preparing build 13-Apr-2017 11:24:21 5eb5bd4c5014: Preparing build 13-Apr-2017 11:24:21 d195a7a18c70: Preparing build 13-Apr-2017 11:24:21 af605e724c5a: Preparing build 13-Apr-2017 11:24:21 59f161c3069d: Preparing build 13-Apr-2017 11:24:21 4f03495a4d7d: Preparing build 13-Apr-2017 11:24:21 a2688f6622a7: Waiting build 13-Apr-2017 11:24:21 e24a372680fc: Waiting build 13-Apr-2017 11:24:21 7d760664bbad: Waiting build 13-Apr-2017 11:24:21 5eb5bd4c5014: Waiting build 13-Apr-2017 11:24:21 d195a7a18c70: Waiting build 13-Apr-2017 11:24:21 af605e724c5a: Waiting build 13-Apr-2017 11:24:21 59f161c3069d: Waiting build 13-Apr-2017 11:24:21 4f03495a4d7d: Waiting build 13-Apr-2017 11:24:22 df9d07df8405: Layer already exists build 13-Apr-2017 11:24:22 5e269aa11a2f: Layer already exists build 13-Apr-2017 11:24:22 de586ccf9c4a: Layer already exists build 13-Apr-2017 11:24:22 2df1b7187a19: Layer already exists build 13-Apr-2017 11:24:22 1687def61c7d: Layer already exists build 13-Apr-2017 11:24:22 7d760664bbad: Layer already exists build 13-Apr-2017 11:24:22 a2688f6622a7: Layer already exists build 13-Apr-2017 11:24:22 e24a372680fc: Layer already exists build 13-Apr-2017 11:24:22 5eb5bd4c5014: Layer already exists build 13-Apr-2017 11:24:22 d195a7a18c70: Layer already exists build 13-Apr-2017 11:24:22 af605e724c5a: Layer already exists build 13-Apr-2017 11:24:22 59f161c3069d: Layer already exists build 13-Apr-2017 11:24:22 4f03495a4d7d: Layer already exists build 13-Apr-2017 11:24:23 latest: digest: sha256:70ce8595532dde51de7778847162fbbc8ab8ce320f2e302590a2ac72e207b92a size: 3031 build 13-Apr-2017 11:24:23 Untagged: 13148:latest build 13-Apr-2017 11:24:23 Sending build context to Docker daemon 12.1 MB build 13-Apr-2017 11:24:23 build 13-Apr-2017 11:24:23 Step 1/11 : FROM clowder/pyclowder:1 build 13-Apr-2017 11:24:23 ---> 2dd17798784b build 13-Apr-2017 11:24:23 Step 2/11 : MAINTAINER Yan Zhao build 13-Apr-2017 11:24:23 ---> Using cache build 13-Apr-2017 11:24:23 ---> bc9047907227 build 13-Apr-2017 11:24:23 Step 3/11 : ENV RABBITMQ_URI "" RABBITMQ_EXCHANGE "clowder" RABBITMQ_VHOST "%2F" RABBITMQ_QUEUE "ncsa.msc.PhenotypeExtractor" MONGO_URI "" DB_USERNAME "" DB_PASSWORD "" MAIN_SCRIPT "extractor-Phenotype.py" build 13-Apr-2017 11:24:23 ---> Using cache build 13-Apr-2017 11:24:23 ---> 5f5007e3b206 build 13-Apr-2017 11:24:23 Step 4/11 : USER root build 13-Apr-2017 11:24:23 ---> Using cache build 13-Apr-2017 11:24:23 ---> 0a6e79b664c6 build 13-Apr-2017 11:24:23 Step 5/11 : COPY requirements.txt /home/clowder/ build 13-Apr-2017 11:24:23 ---> Using cache build 13-Apr-2017 11:24:23 ---> 7bacfaeeca18 build 13-Apr-2017 11:24:23 Step 6/11 : RUN pip install --upgrade pip build 13-Apr-2017 11:24:23 ---> Using cache build 13-Apr-2017 11:24:23 ---> af96bba085db build 13-Apr-2017 11:24:23 Step 7/11 : RUN pip install -r /home/clowder/requirements.txt build 13-Apr-2017 11:24:23 ---> Using cache build 13-Apr-2017 11:24:23 ---> b7818941ea67 build 13-Apr-2017 11:24:23 Step 8/11 : USER clowder build 13-Apr-2017 11:24:23 ---> Using cache build 13-Apr-2017 11:24:23 ---> f81f136db980 build 13-Apr-2017 11:24:23 Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ build 13-Apr-2017 11:24:24 ---> 4759a7b18e70 build 13-Apr-2017 11:24:24 Removing intermediate container 8d9fffc2536e build 13-Apr-2017 11:24:24 Step 10/11 : ENTRYPOINT /home/clowder/entrypoint.sh build 13-Apr-2017 11:24:24 ---> Running in cb8853e5a24f build 13-Apr-2017 11:24:24 ---> 3ccc5564c5a1 build 13-Apr-2017 11:24:24 Removing intermediate container cb8853e5a24f build 13-Apr-2017 11:24:24 Step 11/11 : CMD extractor build 13-Apr-2017 11:24:24 ---> Running in 9e79656c1569 build 13-Apr-2017 11:24:24 ---> 74a6e7ef4110 build 13-Apr-2017 11:24:24 Removing intermediate container 9e79656c1569 build 13-Apr-2017 11:24:24 Successfully built 74a6e7ef4110 build 13-Apr-2017 11:24:24 The push refers to a repository [docker.io/clowder/extractors-msc-phenotype] build 13-Apr-2017 11:24:24 7c148820c5f8: Preparing build 13-Apr-2017 11:24:24 9ee39071d09d: Preparing build 13-Apr-2017 11:24:24 6bece1ab73e7: Preparing build 13-Apr-2017 11:24:24 1ad5df38e0be: Preparing build 13-Apr-2017 11:24:24 5e269aa11a2f: Preparing build 13-Apr-2017 11:24:24 7d760664bbad: Preparing build 13-Apr-2017 11:24:24 a2688f6622a7: Preparing build 13-Apr-2017 11:24:24 e24a372680fc: Preparing build 13-Apr-2017 11:24:24 5eb5bd4c5014: Preparing build 13-Apr-2017 11:24:24 d195a7a18c70: Preparing build 13-Apr-2017 11:24:24 af605e724c5a: Preparing build 13-Apr-2017 11:24:24 59f161c3069d: Preparing build 13-Apr-2017 11:24:24 4f03495a4d7d: Preparing build 13-Apr-2017 11:24:24 5eb5bd4c5014: Waiting build 13-Apr-2017 11:24:24 d195a7a18c70: Waiting build 13-Apr-2017 11:24:24 af605e724c5a: Waiting build 13-Apr-2017 11:24:24 59f161c3069d: Waiting build 13-Apr-2017 11:24:24 7d760664bbad: Waiting build 13-Apr-2017 11:24:24 4f03495a4d7d: Waiting build 13-Apr-2017 11:24:24 a2688f6622a7: Waiting build 13-Apr-2017 11:24:24 e24a372680fc: Waiting build 13-Apr-2017 11:24:25 5e269aa11a2f: Mounted from clowder/extractors-msc-monitor build 13-Apr-2017 11:24:25 7d760664bbad: Mounted from clowder/extractors-msc-monitor build 13-Apr-2017 11:24:26 a2688f6622a7: Mounted from clowder/extractors-msc-monitor build 13-Apr-2017 11:24:26 1ad5df38e0be: Pushed build 13-Apr-2017 11:24:26 e24a372680fc: Mounted from clowder/extractors-msc-monitor build 13-Apr-2017 11:24:27 6bece1ab73e7: Pushed build 13-Apr-2017 11:24:27 d195a7a18c70: Mounted from clowder/extractors-msc-monitor build 13-Apr-2017 11:24:27 5eb5bd4c5014: Mounted from clowder/extractors-msc-monitor build 13-Apr-2017 11:24:27 59f161c3069d: Mounted from clowder/extractors-msc-monitor build 13-Apr-2017 11:24:27 af605e724c5a: Mounted from clowder/extractors-msc-monitor build 13-Apr-2017 11:24:27 9ee39071d09d: Pushed build 13-Apr-2017 11:24:27 7c148820c5f8: Pushed build 13-Apr-2017 11:24:28 4f03495a4d7d: Mounted from clowder/extractors-msc-monitor build 13-Apr-2017 11:24:30 master: digest: sha256:a70117e6dc272f2d0cd2e763768f9fdbb81cabc247bf354099021e85b341ec3d size: 3031 build 13-Apr-2017 11:24:30 The push refers to a repository [docker.io/clowder/extractors-msc-phenotype] build 13-Apr-2017 11:24:30 7c148820c5f8: Preparing build 13-Apr-2017 11:24:30 9ee39071d09d: Preparing build 13-Apr-2017 11:24:30 6bece1ab73e7: Preparing build 13-Apr-2017 11:24:30 1ad5df38e0be: Preparing build 13-Apr-2017 11:24:30 5e269aa11a2f: Preparing build 13-Apr-2017 11:24:30 7d760664bbad: Preparing build 13-Apr-2017 11:24:30 a2688f6622a7: Preparing build 13-Apr-2017 11:24:30 e24a372680fc: Preparing build 13-Apr-2017 11:24:30 5eb5bd4c5014: Preparing build 13-Apr-2017 11:24:30 d195a7a18c70: Preparing build 13-Apr-2017 11:24:30 af605e724c5a: Preparing build 13-Apr-2017 11:24:30 59f161c3069d: Preparing build 13-Apr-2017 11:24:30 4f03495a4d7d: Preparing build 13-Apr-2017 11:24:30 7d760664bbad: Waiting build 13-Apr-2017 11:24:30 a2688f6622a7: Waiting build 13-Apr-2017 11:24:30 e24a372680fc: Waiting build 13-Apr-2017 11:24:30 5eb5bd4c5014: Waiting build 13-Apr-2017 11:24:30 d195a7a18c70: Waiting build 13-Apr-2017 11:24:30 af605e724c5a: Waiting build 13-Apr-2017 11:24:30 59f161c3069d: Waiting build 13-Apr-2017 11:24:30 4f03495a4d7d: Waiting build 13-Apr-2017 11:24:30 1ad5df38e0be: Layer already exists build 13-Apr-2017 11:24:30 7c148820c5f8: Layer already exists build 13-Apr-2017 11:24:30 9ee39071d09d: Layer already exists build 13-Apr-2017 11:24:30 5e269aa11a2f: Layer already exists build 13-Apr-2017 11:24:30 6bece1ab73e7: Layer already exists build 13-Apr-2017 11:24:30 e24a372680fc: Layer already exists build 13-Apr-2017 11:24:30 d195a7a18c70: Layer already exists build 13-Apr-2017 11:24:30 7d760664bbad: Layer already exists build 13-Apr-2017 11:24:30 5eb5bd4c5014: Layer already exists build 13-Apr-2017 11:24:30 a2688f6622a7: Layer already exists build 13-Apr-2017 11:24:30 af605e724c5a: Layer already exists build 13-Apr-2017 11:24:30 59f161c3069d: Layer already exists build 13-Apr-2017 11:24:31 4f03495a4d7d: Layer already exists build 13-Apr-2017 11:24:31 latest: digest: sha256:a70117e6dc272f2d0cd2e763768f9fdbb81cabc247bf354099021e85b341ec3d size: 3031 build 13-Apr-2017 11:24:31 Untagged: 13148:latest simple 13-Apr-2017 11:24:31 Finished task 'docker build' with result: Success simple 13-Apr-2017 11:24:31 Running post build plugin 'Docker Container Cleanup' simple 13-Apr-2017 11:24:31 Running post build plugin 'NCover Results Collector' simple 13-Apr-2017 11:24:31 Running post build plugin 'Clover Results Collector' simple 13-Apr-2017 11:24:31 Running post build plugin 'npm Cache Cleanup' simple 13-Apr-2017 11:24:31 Running post build plugin 'Artifact Copier' simple 13-Apr-2017 11:24:31 Finalising the build... simple 13-Apr-2017 11:24:31 Stopping timer. simple 13-Apr-2017 11:24:31 Build CATS-MSC1-JOB1-3 completed. simple 13-Apr-2017 11:24:31 Running on server: post build plugin 'NCover Results Collector' simple 13-Apr-2017 11:24:31 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 13-Apr-2017 11:24:31 Running on server: post build plugin 'Clover Delta Calculator' simple 13-Apr-2017 11:24:31 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 13-Apr-2017 11:24:31 All post build plugins have finished simple 13-Apr-2017 11:24:31 Generating build results summary... simple 13-Apr-2017 11:24:31 Saving build results to disk... simple 13-Apr-2017 11:24:31 Logging substituted variables... simple 13-Apr-2017 11:24:31 Indexing build results... simple 13-Apr-2017 11:24:31 Finished building CATS-MSC1-JOB1-3.