simple 20-Oct-2016 18:16:40 Build Clowder - pyclowder - Default Job #18 (CATS-PYC-JOB1-18) started building on agent buildserver-1.ncsa.illinois.edu simple 20-Oct-2016 18:16:40 Remote Agent simple 20-Oct-2016 18:16:40 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC-JOB1 simple 20-Oct-2016 18:16:40 Executing build Clowder - pyclowder - Default Job #18 (CATS-PYC-JOB1-18) simple 20-Oct-2016 18:16:40 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 20-Oct-2016 18:16:40 Updating source code to revision: a1f2c6a970eefbb9060a0a9306bd30d1da712ab4 simple 20-Oct-2016 18:16:41 Fetching 'refs/heads/master' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git'. Will try to do a shallow fetch. simple 20-Oct-2016 18:16:41 Warning: Permanently added '[127.0.0.1]:51114' (RSA) to the list of known hosts. simple 20-Oct-2016 18:16:41 From ssh://127.0.0.1:51114/cats/pyclowder simple 20-Oct-2016 18:16:41 + 1e3a59b...a1f2c6a master -> master (forced update) simple 20-Oct-2016 18:16:41 Checking out revision a1f2c6a970eefbb9060a0a9306bd30d1da712ab4. simple 20-Oct-2016 18:16:41 Already on 'master' simple 20-Oct-2016 18:16:42 Updated source code to revision: a1f2c6a970eefbb9060a0a9306bd30d1da712ab4 simple 20-Oct-2016 18:16:42 Finished task 'Checkout Default Repository' with result: Success simple 20-Oct-2016 18:16:42 Running pre-build action: VCS Version Collector simple 20-Oct-2016 18:16:42 Starting task 'docker build and push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 20-Oct-2016 18:16:42 Beginning to execute external process for build 'Clowder - pyclowder - Default Job #18 (CATS-PYC-JOB1-18)'\n ... running command line: \n/bin/sh docker.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=master\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_repository_revision_number=a1f2c6a970eefbb9060a0a9306bd30d1da712ab4\nbamboo_repository_102203416_git_branch=master\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC-JOB1-18\nbamboo_repository_102203416_branch_name=master\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_planRepository_1_name=pyclowder\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC-JOB1\nbamboo_buildKey=CATS-PYC-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=pyclowder\nbamboo_planRepository_name=pyclowder\nbamboo_buildNumber=18\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC-JOB1-18\nbamboo_repository_102203416_name=pyclowder\nPROJECT=ncsa\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git\nbamboo_agentId=108560385\nbamboo_planName=Clowder - pyclowder\nbamboo_shortPlanKey=PYC\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_shortJobKey=JOB1\nbamboo_planRepository_revision=a1f2c6a970eefbb9060a0a9306bd30d1da712ab4\nbamboo_repository_previous_revision_number=1e3a59b53d476965332739bd5b2f0aabf9b76fde\nbamboo_buildTimeStamp=2016-10-20T18:16:40.157-05:00\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_planRepository_previousRevision=1e3a59b53d476965332739bd5b2f0aabf9b76fde\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_buildResultKey=CATS-PYC-JOB1-18\nbamboo_repository_git_branch=master\nbamboo_repository_branch_name=master\nbamboo_buildPlanName=Clowder - pyclowder - Default 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build 20-Oct-2016 18:16:42 Sending build context to Docker daemon 222.2 kB build 20-Oct-2016 18:16:42 build 20-Oct-2016 18:16:42 Step 1 : FROM ubuntu:16.04 build 20-Oct-2016 18:16:43 16.04: Pulling from library/ubuntu build 20-Oct-2016 18:16:43 Digest: sha256:2d44ae143feeb36f4c898d32ed2ab2dffeb3a573d2d8928646dfc9cb7deb1315 build 20-Oct-2016 18:16:43 Status: Image is up to date for ubuntu:16.04 build 20-Oct-2016 18:16:43 ---> f753707788c5 build 20-Oct-2016 18:16:43 Step 2 : MAINTAINER Rui Liu build 20-Oct-2016 18:16:43 ---> Using cache build 20-Oct-2016 18:16:43 ---> dba4184f7053 build 20-Oct-2016 18:16:43 Step 3 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends netcat python python-pip && pip install --upgrade pika requests setuptools urllib3 && rm -rf /var/lib/apt/lists/* && adduser --system clowder build 20-Oct-2016 18:16:43 ---> Using cache build 20-Oct-2016 18:16:43 ---> f4fa3256ff82 build 20-Oct-2016 18:16:43 Step 4 : COPY pyclowder /tmp/pyclowder/pyclowder build 20-Oct-2016 18:16:43 ---> c5c25511ac6f build 20-Oct-2016 18:16:43 Removing intermediate container 761edeaa3e48 build 20-Oct-2016 18:16:43 Step 5 : COPY setup.py /tmp/pyclowder build 20-Oct-2016 18:16:44 ---> 7440c5baac59 build 20-Oct-2016 18:16:44 Removing intermediate container c7eca232d494 build 20-Oct-2016 18:16:44 Step 6 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder build 20-Oct-2016 18:16:44 ---> Running in 567a70d661ac build 20-Oct-2016 18:16:46 Processing /tmp/pyclowder build 20-Oct-2016 18:16:46 Installing collected packages: pyclowder build 20-Oct-2016 18:16:46 Running setup.py install for pyclowder: started build 20-Oct-2016 18:16:46 Running setup.py install for pyclowder: finished with status 'done' build 20-Oct-2016 18:16:46 Successfully installed pyclowder-0.9.2 build 20-Oct-2016 18:16:47 You are using pip version 8.1.1, however version 8.1.2 is available. build 20-Oct-2016 18:16:47 You should consider upgrading via the 'pip install --upgrade pip' command. build 20-Oct-2016 18:16:47  ---> f5fb96ee10e6 build 20-Oct-2016 18:16:47 Removing intermediate container 567a70d661ac build 20-Oct-2016 18:16:47 Successfully built f5fb96ee10e6 build 20-Oct-2016 18:16:48 The push refers to a repository [docker.io/ncsa/clowder-extractors-python-base] build 20-Oct-2016 18:16:48 c2b104e8112c: Preparing build 20-Oct-2016 18:16:48 d212b0d1f6aa: Preparing build 20-Oct-2016 18:16:48 2485f0dcf3e8: Preparing build 20-Oct-2016 18:16:48 527d3e661e30: Preparing build 20-Oct-2016 18:16:48 0e20f4f8a593: Preparing build 20-Oct-2016 18:16:48 1633f88f8c9f: Preparing build 20-Oct-2016 18:16:48 46c98490f575: Preparing build 20-Oct-2016 18:16:48 8ba4b4ea187c: Preparing build 20-Oct-2016 18:16:48 c854e44a1a5a: Preparing build 20-Oct-2016 18:16:48 46c98490f575: Waiting build 20-Oct-2016 18:16:48 8ba4b4ea187c: Waiting build 20-Oct-2016 18:16:48 1633f88f8c9f: Waiting build 20-Oct-2016 18:16:48 c854e44a1a5a: Waiting build 20-Oct-2016 18:16:49 0e20f4f8a593: Layer already exists build 20-Oct-2016 18:16:49 527d3e661e30: Layer already exists build 20-Oct-2016 18:16:49 1633f88f8c9f: Layer already exists build 20-Oct-2016 18:16:50 46c98490f575: Layer already exists build 20-Oct-2016 18:16:50 8ba4b4ea187c: Layer already exists build 20-Oct-2016 18:16:50 c854e44a1a5a: Layer already exists build 20-Oct-2016 18:16:51 c2b104e8112c: Pushed build 20-Oct-2016 18:16:52 d212b0d1f6aa: Pushed build 20-Oct-2016 18:16:52 2485f0dcf3e8: Pushed build 20-Oct-2016 18:16:55 latest: digest: sha256:d121623ca97635efedad1e916ce88ecc1d87d2315329742882446d29c0e23d88 size: 2194 build 20-Oct-2016 18:16:55 Untagged: 4914:latest build 20-Oct-2016 18:16:55 Sending build context to Docker daemon 14.85 kB build 20-Oct-2016 18:16:55 build 20-Oct-2016 18:16:55 Step 1 : FROM ncsa/clowder-extractors-python-base build 20-Oct-2016 18:16:55 latest: Pulling from ncsa/clowder-extractors-python-base build 20-Oct-2016 18:16:55 Digest: sha256:d121623ca97635efedad1e916ce88ecc1d87d2315329742882446d29c0e23d88 build 20-Oct-2016 18:16:55 Status: Image is up to date for ncsa/clowder-extractors-python-base:latest build 20-Oct-2016 18:16:55 ---> f5fb96ee10e6 build 20-Oct-2016 18:16:55 Step 2 : MAINTAINER Rob Kooper build 20-Oct-2016 18:16:55 ---> Running in cabe193c55ef build 20-Oct-2016 18:16:56 ---> 2504f5a6e265 build 20-Oct-2016 18:16:56 Removing intermediate container cabe193c55ef build 20-Oct-2016 18:16:56 Step 3 : ENV RABBITMQ_URI "" RABBITMQ_EXCHANGE "clowder" RABBITMQ_VHOST "%2F" RABBITMQ_QUEUE "wordCount" REGISTRATION_ENDPOINTS "" MAIN_SCRIPT "wordcount.py" build 20-Oct-2016 18:16:56 ---> Running in 89a4238611a4 build 20-Oct-2016 18:16:56 ---> a5554c62f9a9 build 20-Oct-2016 18:16:56 Removing intermediate container 89a4238611a4 build 20-Oct-2016 18:16:56 Step 4 : USER clowder build 20-Oct-2016 18:16:56 ---> Running in 392cc6774ba1 build 20-Oct-2016 18:16:56 ---> 2f263a652302 build 20-Oct-2016 18:16:56 Removing intermediate container 392cc6774ba1 build 20-Oct-2016 18:16:56 Step 5 : COPY entrypoint.sh *.py extractor_info.json /home/clowder/ build 20-Oct-2016 18:16:56 ---> b444e3dbe527 build 20-Oct-2016 18:16:56 Removing intermediate container 6bbbec6a6c2f build 20-Oct-2016 18:16:56 Step 6 : ENTRYPOINT /home/clowder/entrypoint.sh build 20-Oct-2016 18:16:56 ---> Running in 248f53ae50e9 build 20-Oct-2016 18:16:56 ---> 0e84db0fe534 build 20-Oct-2016 18:16:57 Removing intermediate container 248f53ae50e9 build 20-Oct-2016 18:16:57 Step 7 : CMD extractor build 20-Oct-2016 18:16:57 ---> Running in e653a3cf39d4 build 20-Oct-2016 18:16:57 ---> 890357c66857 build 20-Oct-2016 18:16:57 Removing intermediate container e653a3cf39d4 build 20-Oct-2016 18:16:57 Successfully built 890357c66857 build 20-Oct-2016 18:16:58 The push refers to a repository [docker.io/ncsa/clowder-extractors-wordcount] build 20-Oct-2016 18:16:58 44a24a77decd: Preparing build 20-Oct-2016 18:16:58 c2b104e8112c: Preparing build 20-Oct-2016 18:16:58 d212b0d1f6aa: Preparing build 20-Oct-2016 18:16:58 2485f0dcf3e8: Preparing build 20-Oct-2016 18:16:58 527d3e661e30: Preparing build 20-Oct-2016 18:16:58 0e20f4f8a593: Preparing build 20-Oct-2016 18:16:58 1633f88f8c9f: Preparing build 20-Oct-2016 18:16:58 46c98490f575: Preparing build 20-Oct-2016 18:16:58 8ba4b4ea187c: Preparing build 20-Oct-2016 18:16:58 c854e44a1a5a: Preparing build 20-Oct-2016 18:16:58 0e20f4f8a593: Waiting build 20-Oct-2016 18:16:58 1633f88f8c9f: Waiting build 20-Oct-2016 18:16:58 46c98490f575: Waiting build 20-Oct-2016 18:16:58 8ba4b4ea187c: Waiting build 20-Oct-2016 18:16:58 c854e44a1a5a: Waiting build 20-Oct-2016 18:16:59 527d3e661e30: Layer already exists build 20-Oct-2016 18:16:59 c2b104e8112c: Mounted from ncsa/clowder-extractors-python-base build 20-Oct-2016 18:16:59 d212b0d1f6aa: Mounted from ncsa/clowder-extractors-python-base build 20-Oct-2016 18:16:59 2485f0dcf3e8: Mounted from ncsa/clowder-extractors-python-base build 20-Oct-2016 18:16:59 0e20f4f8a593: Layer already exists build 20-Oct-2016 18:16:59 1633f88f8c9f: Layer already exists build 20-Oct-2016 18:16:59 46c98490f575: Layer already exists build 20-Oct-2016 18:16:59 8ba4b4ea187c: Layer already exists build 20-Oct-2016 18:16:59 c854e44a1a5a: Layer already exists build 20-Oct-2016 18:17:00 44a24a77decd: Pushed build 20-Oct-2016 18:17:03 latest: digest: sha256:ac3ab70ccde24df0eb8e473651c188f6553da795c9c758df84ea72501997e7e6 size: 2402 build 20-Oct-2016 18:17:03 Untagged: 4914:latest simple 20-Oct-2016 18:17:03 Finished task 'docker build and push' with result: Success simple 20-Oct-2016 18:17:03 Running post build plugin 'Docker Container Cleanup' simple 20-Oct-2016 18:17:03 Running post build plugin 'NCover Results Collector' simple 20-Oct-2016 18:17:03 Running post build plugin 'Clover Results Collector' simple 20-Oct-2016 18:17:03 Running post build plugin 'npm Cache Cleanup' simple 20-Oct-2016 18:17:03 Running post build plugin 'Artifact Copier' simple 20-Oct-2016 18:17:03 Finalising the build... simple 20-Oct-2016 18:17:03 Stopping timer. simple 20-Oct-2016 18:17:03 Build CATS-PYC-JOB1-18 completed. simple 20-Oct-2016 18:17:03 Running on server: post build plugin 'NCover Results Collector' simple 20-Oct-2016 18:17:03 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 20-Oct-2016 18:17:03 Running on server: post build plugin 'Clover Delta Calculator' simple 20-Oct-2016 18:17:03 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 20-Oct-2016 18:17:03 All post build plugins have finished simple 20-Oct-2016 18:17:03 Generating build results summary... simple 20-Oct-2016 18:17:03 Saving build results to disk... simple 20-Oct-2016 18:17:03 Logging substituted variables... simple 20-Oct-2016 18:17:03 Indexing build results... simple 20-Oct-2016 18:17:03 Finished building CATS-PYC-JOB1-18.