simple 29-Sep-2019 15:50:24 Build Clowder - pyclowder - Default Job #25 (CATS-PYC-JOB1-25) started building on agent buildserver-2.os.ncsa.edu simple 29-Sep-2019 15:50:24 Remote agent on host buildserver-2.os.ncsa.edu simple 29-Sep-2019 15:50:24 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC-JOB1 simple 29-Sep-2019 15:50:24 Executing build Clowder - pyclowder - Default Job #25 (CATS-PYC-JOB1-25) simple 29-Sep-2019 15:50:24 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 29-Sep-2019 15:50:24 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC-JOB1 simple 29-Sep-2019 15:50:24 Updating source code to revision: 2f7d30fad2ee3a92cd203afb62a6654623151c25 simple 29-Sep-2019 15:50:24 Enforcing full fetch as requested revision has not been found on the configured branch simple 29-Sep-2019 15:50:24 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC-JOB1/.git'. simple 29-Sep-2019 15:50:24 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC-JOB1/.git/ simple 29-Sep-2019 15:50:24 Fetching 'refs/heads/*' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git'. Will try to do a shallow fetch. simple 29-Sep-2019 15:50:24 Warning: Permanently added '[127.0.0.1]:39245' (RSA) to the list of known hosts. simple 29-Sep-2019 15:50:24 From ssh://127.0.0.1:39245/cats/pyclowder simple 29-Sep-2019 15:50:24 * [new branch] Add-redirect-option -> Add-redirect-option simple 29-Sep-2019 15:50:24 * [new branch] CATS-784-python3-compatible -> CATS-784-python3-compatible simple 29-Sep-2019 15:50:24 * [new branch] CATSPYC-19-add-anonymous-email-receiver-on-the-email-message -> CATSPYC-19-add-anonymous-email-receiver-on-the-email-message simple 29-Sep-2019 15:50:24 * [new branch] SYN-63-Remove-data-from-geoserver -> SYN-63-Remove-data-from-geoserver simple 29-Sep-2019 15:50:24 * [new branch] add-get-or-create-methods -> add-get-or-create-methods simple 29-Sep-2019 15:50:24 * [new branch] add-sphinx-docs -> add-sphinx-docs simple 29-Sep-2019 15:50:24 * [new branch] boxhack -> boxhack simple 29-Sep-2019 15:50:24 * [new branch] bugfix/BD-2344-update-pip-in-simple-extractor-wrapper -> bugfix/BD-2344-update-pip-in-simple-extractor-wrapper simple 29-Sep-2019 15:50:24 * [new branch] bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding -> bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding simple 29-Sep-2019 15:50:24 * [new branch] bugfix/CATS-729-copy-dataset-extractor-fix -> bugfix/CATS-729-copy-dataset-extractor-fix simple 29-Sep-2019 15:50:24 * [new branch] bugfix/GLGVO-343-parser-vm-spawning-many-jobs-update -> bugfix/GLGVO-343-parser-vm-spawning-many-jobs-update simple 29-Sep-2019 15:50:24 * [new branch] check_duplicate-flag -> check_duplicate-flag simple 29-Sep-2019 15:50:24 * [new branch] clowder-clients-clean -> clowder-clients-clean simple 29-Sep-2019 15:50:24 * [new branch] develop -> develop simple 29-Sep-2019 15:50:24 * [new branch] extractor-bugfix -> extractor-bugfix simple 29-Sep-2019 15:50:24 * [new branch] feature/GEOD-927-fix-add-test-for-pyclowder2-geostreams -> feature/GEOD-927-fix-add-test-for-pyclowder2-geostreams simple 29-Sep-2019 15:50:24 * [new branch] geostreams -> geostreams simple 29-Sep-2019 15:50:24 * [new branch] hotfix/extractor-info.json -> hotfix/extractor-info.json simple 29-Sep-2019 15:50:24 * [new branch] master -> master simple 29-Sep-2019 15:50:24 * [new branch] rename_functions -> rename_functions simple 29-Sep-2019 15:50:24 * [new branch] seven-miles-changes -> seven-miles-changes simple 29-Sep-2019 15:50:24 * [new tag] 2.0.2 -> 2.0.2 simple 29-Sep-2019 15:50:24 * [new tag] v2.0.3 -> v2.0.3 simple 29-Sep-2019 15:50:24 * [new tag] v2.1.0 -> v2.1.0 simple 29-Sep-2019 15:50:24 * [new tag] v2.1.1 -> v2.1.1 simple 29-Sep-2019 15:50:24 * [new tag] v2.2.0 -> v2.2.0 simple 29-Sep-2019 15:50:24 * [new tag] v2.2.2 -> v2.2.2 simple 29-Sep-2019 15:50:24 Checking out revision 2f7d30fad2ee3a92cd203afb62a6654623151c25. simple 29-Sep-2019 15:50:24 fatal: reference is not a tree: 2f7d30fad2ee3a92cd203afb62a6654623151c25 error 29-Sep-2019 15:50:24 Checkout to revision 2f7d30fad2ee3a92cd203afb62a6654623151c25 has failed. simple 29-Sep-2019 15:50:24 Warning: failed to checkout source code to directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC-JOB1', trying to recover... simple 29-Sep-2019 15:50:24 Cleaned source directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC-JOB1'... simple 29-Sep-2019 15:50:24 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC-JOB1/.git'. simple 29-Sep-2019 15:50:24 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC-JOB1/.git/ simple 29-Sep-2019 15:50:24 Fetching 'refs/heads/*' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git'. simple 29-Sep-2019 15:50:24 Warning: Permanently added '[127.0.0.1]:39245' (RSA) to the list of known hosts. simple 29-Sep-2019 15:50:25 From ssh://127.0.0.1:39245/cats/pyclowder simple 29-Sep-2019 15:50:25 * [new branch] Add-redirect-option -> Add-redirect-option simple 29-Sep-2019 15:50:25 * [new branch] CATS-784-python3-compatible -> CATS-784-python3-compatible simple 29-Sep-2019 15:50:25 * [new branch] CATSPYC-19-add-anonymous-email-receiver-on-the-email-message -> CATSPYC-19-add-anonymous-email-receiver-on-the-email-message simple 29-Sep-2019 15:50:25 * [new branch] SYN-63-Remove-data-from-geoserver -> SYN-63-Remove-data-from-geoserver simple 29-Sep-2019 15:50:25 * [new branch] add-get-or-create-methods -> add-get-or-create-methods simple 29-Sep-2019 15:50:25 * [new branch] add-sphinx-docs -> add-sphinx-docs simple 29-Sep-2019 15:50:25 * [new branch] boxhack -> boxhack simple 29-Sep-2019 15:50:25 * [new branch] bugfix/BD-2344-update-pip-in-simple-extractor-wrapper -> bugfix/BD-2344-update-pip-in-simple-extractor-wrapper simple 29-Sep-2019 15:50:25 * [new branch] bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding -> bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding simple 29-Sep-2019 15:50:25 * [new branch] bugfix/CATS-729-copy-dataset-extractor-fix -> bugfix/CATS-729-copy-dataset-extractor-fix simple 29-Sep-2019 15:50:25 * [new branch] bugfix/GLGVO-343-parser-vm-spawning-many-jobs-update -> bugfix/GLGVO-343-parser-vm-spawning-many-jobs-update simple 29-Sep-2019 15:50:25 * [new branch] check_duplicate-flag -> check_duplicate-flag simple 29-Sep-2019 15:50:25 * [new branch] clowder-clients-clean -> clowder-clients-clean simple 29-Sep-2019 15:50:25 * [new branch] develop -> develop simple 29-Sep-2019 15:50:25 * [new branch] extractor-bugfix -> extractor-bugfix simple 29-Sep-2019 15:50:25 * [new branch] feature/GEOD-927-fix-add-test-for-pyclowder2-geostreams -> feature/GEOD-927-fix-add-test-for-pyclowder2-geostreams simple 29-Sep-2019 15:50:25 * [new branch] geostreams -> geostreams simple 29-Sep-2019 15:50:25 * [new branch] hotfix/extractor-info.json -> hotfix/extractor-info.json simple 29-Sep-2019 15:50:25 * [new branch] master -> master simple 29-Sep-2019 15:50:25 * [new branch] rename_functions -> rename_functions simple 29-Sep-2019 15:50:25 * [new branch] seven-miles-changes -> seven-miles-changes simple 29-Sep-2019 15:50:25 * [new tag] 2.0.2 -> 2.0.2 simple 29-Sep-2019 15:50:25 * [new tag] v2.0.3 -> v2.0.3 simple 29-Sep-2019 15:50:25 * [new tag] v2.1.0 -> v2.1.0 simple 29-Sep-2019 15:50:25 * [new tag] v2.1.1 -> v2.1.1 simple 29-Sep-2019 15:50:25 * [new tag] v2.2.0 -> v2.2.0 simple 29-Sep-2019 15:50:25 * [new tag] v2.2.2 -> v2.2.2 simple 29-Sep-2019 15:50:25 Fetching to source directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC-JOB1' completed, proceeding with checkout... simple 29-Sep-2019 15:50:25 Checking out revision 2f7d30fad2ee3a92cd203afb62a6654623151c25. simple 29-Sep-2019 15:50:25 Note: checking out '2f7d30fad2ee3a92cd203afb62a6654623151c25'. simple 29-Sep-2019 15:50:25 simple 29-Sep-2019 15:50:25 You are in 'detached HEAD' state. You can look around, make experimental simple 29-Sep-2019 15:50:25 changes and commit them, and you can discard any commits you make in this simple 29-Sep-2019 15:50:25 state without impacting any branches by performing another checkout. simple 29-Sep-2019 15:50:25 simple 29-Sep-2019 15:50:25 If you want to create a new branch to retain commits you create, you may simple 29-Sep-2019 15:50:25 do so (now or later) by using -b with the checkout command again. Example: simple 29-Sep-2019 15:50:25 simple 29-Sep-2019 15:50:25 git checkout -b simple 29-Sep-2019 15:50:25 simple 29-Sep-2019 15:50:25 HEAD is now at 2f7d30f... set version to 2.2.2 simple 29-Sep-2019 15:50:25 Checkout completed, recover successful. simple 29-Sep-2019 15:50:25 Updated source code to revision: 2f7d30fad2ee3a92cd203afb62a6654623151c25 simple 29-Sep-2019 15:50:25 Finished task 'Checkout Default Repository' with result: Success simple 29-Sep-2019 15:50:25 Running pre-build action: VCS Version Collector simple 29-Sep-2019 15:50:25 Starting task 'docker build and push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 29-Sep-2019 15:50:25 Beginning to execute external process for build 'Clowder - pyclowder - Default Job #25 (CATS-PYC-JOB1-25)'\n ... running command line: \n/bin/sh docker.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=master\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_planRepository_1_branchDisplayName=master\nbamboo_repository_revision_number=2f7d30fad2ee3a92cd203afb62a6654623151c25\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC-JOB1-25\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC-JOB1\nbamboo_planRepository_1_name=pyclowder\nbamboo_buildKey=CATS-PYC-JOB1\nbamboo_repository_142540804_git_branch=master\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=pyclowder\nbamboo_repository_142540804_previous_revision_number=0463436a000eda6fa7eb0599340254f3c08e25c3\nbamboo_planRepository_name=pyclowder\nbamboo_repository_142540804_revision_number=2f7d30fad2ee3a92cd203afb62a6654623151c25\nbamboo_buildNumber=25\nbamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC-JOB1-25\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git\nbamboo_agentId=140673028\nbamboo_planName=Clowder - pyclowder\nbamboo_shortPlanKey=PYC\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_repository_142540804_git_username=\nbamboo_repository_142540804_branch_name=master\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_shortJobKey=JOB1\nbamboo_planRepository_revision=2f7d30fad2ee3a92cd203afb62a6654623151c25\nbamboo_buildTimeStamp=2019-09-29T11:09:58.704-05:00\nbamboo_repository_previous_revision_number=0463436a000eda6fa7eb0599340254f3c08e25c3\nbamboo_repository_142540804_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_planRepository_previousRevision=0463436a000eda6fa7eb0599340254f3c08e25c3\nbamboo_repository_git_branch=master\nbamboo_buildResultKey=CATS-PYC-JOB1-25\nbamboo_repository_branch_name=master\nbamboo_buildPlanName=Clowder - pyclowder - Default Job\nbamboo_planRepository_1_revision=2f7d30fad2ee3a92cd203afb62a6654623151c25\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=pyclowder\nbamboo_buildFailed=false\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_branch=master\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=0463436a000eda6fa7eb0599340254f3c08e25c3\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_planRepository_branchDisplayName=master\nbamboo_repository_142540804_name=pyclowder\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=master\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=CATS-PYC\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC-JOB1\nbamboo_planKey=CATS-PYC\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_1_branchName=master\n build 29-Sep-2019 15:50:25 Sending build context to Docker daemon 267.8kB build 29-Sep-2019 15:50:25 build 29-Sep-2019 15:50:25 Step 1/10 : FROM ubuntu:16.04 build 29-Sep-2019 15:50:25 ---> 657d80a6401d build 29-Sep-2019 15:50:25 Step 2/10 : ARG PYTHON_VERSION="2.7" build 29-Sep-2019 15:50:25 ---> Using cache build 29-Sep-2019 15:50:25 ---> 7d071fce2822 build 29-Sep-2019 15:50:25 Step 3/10 : ENV PYTHON_VERSION=${PYTHON_VERSION} RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" build 29-Sep-2019 15:50:25 ---> Using cache build 29-Sep-2019 15:50:25 ---> 6d4fba816a1e build 29-Sep-2019 15:50:25 Step 4/10 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python${PYTHON_VERSION} curl && if [ ! -e /usr/bin/python ]; then ln -s /usr/bin/python${PYTHON_VERSION} /usr/bin/python; fi && curl -k https://bootstrap.pypa.io/get-pip.py -o /tmp/get-pip.py && python /tmp/get-pip.py && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* /tmp/get-pip.py build 29-Sep-2019 15:50:25 ---> Using cache build 29-Sep-2019 15:50:25 ---> 120aa51655ff build 29-Sep-2019 15:50:25 Step 5/10 : COPY pyclowder /tmp/pyclowder/pyclowder build 29-Sep-2019 15:50:25 ---> Using cache build 29-Sep-2019 15:50:25 ---> 6d76b3beb121 build 29-Sep-2019 15:50:25 Step 6/10 : COPY setup.py description.rst /tmp/pyclowder/ build 29-Sep-2019 15:50:25 ---> Using cache build 29-Sep-2019 15:50:25 ---> 7019b92eba62 build 29-Sep-2019 15:50:25 Step 7/10 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder build 29-Sep-2019 15:50:25 ---> Using cache build 29-Sep-2019 15:50:25 ---> a795ce28513b build 29-Sep-2019 15:50:25 Step 8/10 : WORKDIR /home/clowder build 29-Sep-2019 15:50:25 ---> Using cache build 29-Sep-2019 15:50:25 ---> 5645cc8cd0ad build 29-Sep-2019 15:50:25 Step 9/10 : COPY notifications.json /home/clowder/ build 29-Sep-2019 15:50:25 ---> Using cache build 29-Sep-2019 15:50:25 ---> 40c16058d27b build 29-Sep-2019 15:50:25 Step 10/10 : CMD python "./${MAIN_SCRIPT}" build 29-Sep-2019 15:50:25 ---> Using cache build 29-Sep-2019 15:50:25 ---> 483f6b9eeee2 build 29-Sep-2019 15:50:25 Successfully built 483f6b9eeee2 build 29-Sep-2019 15:50:25 Successfully tagged clowder/pyclowder:latest build 29-Sep-2019 15:50:25 Sending build context to Docker daemon 265.7kB build 29-Sep-2019 15:50:25 build 29-Sep-2019 15:50:25 Step 1/7 : ARG PYCLOWDER_PYTHON="" build 29-Sep-2019 15:50:25 Step 2/7 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest build 29-Sep-2019 15:50:25 ---> 483f6b9eeee2 build 29-Sep-2019 15:50:25 Step 3/7 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 29-Sep-2019 15:50:25 ---> Using cache build 29-Sep-2019 15:50:25 ---> 6354df7fbdf4 build 29-Sep-2019 15:50:25 Step 4/7 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 29-Sep-2019 15:50:25 ---> Using cache build 29-Sep-2019 15:50:25 ---> 6702f6de3172 build 29-Sep-2019 15:50:25 Step 5/7 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 29-Sep-2019 15:50:25 ---> Using cache build 29-Sep-2019 15:50:25 ---> bae829fa9927 build 29-Sep-2019 15:50:25 Step 6/7 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 29-Sep-2019 15:50:25 ---> Using cache build 29-Sep-2019 15:50:25 ---> 9784bd2b29af build 29-Sep-2019 15:50:25 Step 7/7 : ONBUILD ADD . /home/clowder/ build 29-Sep-2019 15:50:25 ---> Using cache build 29-Sep-2019 15:50:25 ---> 8047b1bffb22 build 29-Sep-2019 15:50:25 Successfully built 8047b1bffb22 build 29-Sep-2019 15:50:25 Successfully tagged clowder/pyclowder:onbuild build 29-Sep-2019 15:50:25 Sending build context to Docker daemon 12.8kB build 29-Sep-2019 15:50:25 build 29-Sep-2019 15:50:26 Step 1/6 : ARG PYCLOWDER_PYTHON="" build 29-Sep-2019 15:50:26 Step 2/6 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:onbuild build 29-Sep-2019 15:50:26 # Executing 5 build triggers build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> e395b176bbdb build 29-Sep-2019 15:50:26 Step 3/6 : ENV MAIN_SCRIPT="binary_extractor.py" RABBITMQ_QUEUE="" IMAGE_BINARY="" IMAGE_TYPE="" IMAGE_THUMBNAIL_COMMAND="" IMAGE_PREVIEW_COMMAND="" PREVIEW_BINARY="" PREVIEW_TYPE="" PREVIEW_COMMAND="" build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> 456b4b0cb7bd build 29-Sep-2019 15:50:26 Step 4/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> ec238bea39b4 build 29-Sep-2019 15:50:26 Step 5/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> a19e424b596f build 29-Sep-2019 15:50:26 Step 6/6 : ONBUILD COPY extractor_info.json /home/clowder/ build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> 3d668c35165f build 29-Sep-2019 15:50:26 Successfully built 3d668c35165f build 29-Sep-2019 15:50:26 Successfully tagged clowder/extractors-binary-preview:onbuild build 29-Sep-2019 15:50:26 Sending build context to Docker daemon 6.656kB build 29-Sep-2019 15:50:26 build 29-Sep-2019 15:50:26 Step 1/11 : ARG PYCLOWDER_PYTHON="" build 29-Sep-2019 15:50:26 Step 2/11 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest build 29-Sep-2019 15:50:26 ---> 483f6b9eeee2 build 29-Sep-2019 15:50:26 Step 3/11 : ENV EXTRACTION_FUNC="" build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> c408b40e7f08 build 29-Sep-2019 15:50:26 Step 4/11 : ENV EXTRACTION_MODULE="" build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> cb83e7f33dd5 build 29-Sep-2019 15:50:26 Step 5/11 : COPY simple_extractor.py . build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> 1a58b1097d91 build 29-Sep-2019 15:50:26 Step 6/11 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> 456476acb7f3 build 29-Sep-2019 15:50:26 Step 7/11 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> b40ceda64422 build 29-Sep-2019 15:50:26 Step 8/11 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> 12149ed413c3 build 29-Sep-2019 15:50:26 Step 9/11 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> 71499aeb4b75 build 29-Sep-2019 15:50:26 Step 10/11 : ONBUILD ADD . /home/clowder/ build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> 97850eeb77e1 build 29-Sep-2019 15:50:26 Step 11/11 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> f56fb155b5e7 build 29-Sep-2019 15:50:26 Successfully built f56fb155b5e7 build 29-Sep-2019 15:50:26 Successfully tagged clowder/extractors-simple-extractor:onbuild build 29-Sep-2019 15:50:26 Sending build context to Docker daemon 13.31kB build 29-Sep-2019 15:50:26 build 29-Sep-2019 15:50:26 Step 1/11 : ARG PYCLOWDER_PYTHON="" build 29-Sep-2019 15:50:26 Step 2/11 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest build 29-Sep-2019 15:50:26 ---> 483f6b9eeee2 build 29-Sep-2019 15:50:26 Step 3/11 : ENV R_SCRIPT="" R_FUNCTION="" build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> 5923eea68865 build 29-Sep-2019 15:50:26 Step 4/11 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> 46a3e99855e9 build 29-Sep-2019 15:50:26 Step 5/11 : COPY r_extractor.py launcher.R /home/clowder/ build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> 59006d89846a build 29-Sep-2019 15:50:26 Step 6/11 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> 53156a685850 build 29-Sep-2019 15:50:26 Step 7/11 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> ca946f6ea4b6 build 29-Sep-2019 15:50:26 Step 8/11 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> 62e2ad448fef build 29-Sep-2019 15:50:26 Step 9/11 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> d5898df1166e build 29-Sep-2019 15:50:26 Step 10/11 : ONBUILD ADD . /home/clowder/ build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> fd381da908c7 build 29-Sep-2019 15:50:26 Step 11/11 : CMD python r_extractor.py build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> 589a8aa0b508 build 29-Sep-2019 15:50:26 Successfully built 589a8aa0b508 build 29-Sep-2019 15:50:26 Successfully tagged clowder/extractors-simple-r-extractor:onbuild build 29-Sep-2019 15:50:26 Sending build context to Docker daemon 267.8kB build 29-Sep-2019 15:50:26 build 29-Sep-2019 15:50:26 Step 1/10 : FROM ubuntu:16.04 build 29-Sep-2019 15:50:26 ---> 657d80a6401d build 29-Sep-2019 15:50:26 Step 2/10 : ARG PYTHON_VERSION="2.7" build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> 7d071fce2822 build 29-Sep-2019 15:50:26 Step 3/10 : ENV PYTHON_VERSION=${PYTHON_VERSION} RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> f6fbf60fc5c0 build 29-Sep-2019 15:50:26 Step 4/10 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python${PYTHON_VERSION} curl && if [ ! -e /usr/bin/python ]; then ln -s /usr/bin/python${PYTHON_VERSION} /usr/bin/python; fi && curl -k https://bootstrap.pypa.io/get-pip.py -o /tmp/get-pip.py && python /tmp/get-pip.py && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* /tmp/get-pip.py build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> f1bc58800597 build 29-Sep-2019 15:50:26 Step 5/10 : COPY pyclowder /tmp/pyclowder/pyclowder build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> 597c3f5e2968 build 29-Sep-2019 15:50:26 Step 6/10 : COPY setup.py description.rst /tmp/pyclowder/ build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> 940fedaa3521 build 29-Sep-2019 15:50:26 Step 7/10 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> aee0a544875b build 29-Sep-2019 15:50:26 Step 8/10 : WORKDIR /home/clowder build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> 91b0209d03b0 build 29-Sep-2019 15:50:26 Step 9/10 : COPY notifications.json /home/clowder/ build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> 4003829c20e8 build 29-Sep-2019 15:50:26 Step 10/10 : CMD python "./${MAIN_SCRIPT}" build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> dbdd232f07b4 build 29-Sep-2019 15:50:26 Successfully built dbdd232f07b4 build 29-Sep-2019 15:50:26 Successfully tagged clowder/pyclowder-python3:latest build 29-Sep-2019 15:50:26 Sending build context to Docker daemon 265.7kB build 29-Sep-2019 15:50:26 build 29-Sep-2019 15:50:26 Step 1/7 : ARG PYCLOWDER_PYTHON="" build 29-Sep-2019 15:50:26 Step 2/7 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest build 29-Sep-2019 15:50:26 ---> dbdd232f07b4 build 29-Sep-2019 15:50:26 Step 3/7 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> 7157f3ca6471 build 29-Sep-2019 15:50:26 Step 4/7 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> 9fb66aacd035 build 29-Sep-2019 15:50:26 Step 5/7 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> 7441db278f16 build 29-Sep-2019 15:50:26 Step 6/7 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> cfaee0b68669 build 29-Sep-2019 15:50:26 Step 7/7 : ONBUILD ADD . /home/clowder/ build 29-Sep-2019 15:50:26 ---> Using cache build 29-Sep-2019 15:50:26 ---> 3870dd769e29 build 29-Sep-2019 15:50:26 Successfully built 3870dd769e29 build 29-Sep-2019 15:50:26 Successfully tagged clowder/pyclowder-python3:onbuild build 29-Sep-2019 15:50:26 Sending build context to Docker daemon 12.8kB build 29-Sep-2019 15:50:26 build 29-Sep-2019 15:50:27 Step 1/6 : ARG PYCLOWDER_PYTHON="" build 29-Sep-2019 15:50:27 Step 2/6 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:onbuild build 29-Sep-2019 15:50:27 # Executing 5 build triggers build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> c1f25b0b606d build 29-Sep-2019 15:50:27 Step 3/6 : ENV MAIN_SCRIPT="binary_extractor.py" RABBITMQ_QUEUE="" IMAGE_BINARY="" IMAGE_TYPE="" IMAGE_THUMBNAIL_COMMAND="" IMAGE_PREVIEW_COMMAND="" PREVIEW_BINARY="" PREVIEW_TYPE="" PREVIEW_COMMAND="" build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> 96aa47903db0 build 29-Sep-2019 15:50:27 Step 4/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> 6de7af0fed49 build 29-Sep-2019 15:50:27 Step 5/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> 03de1d6ca336 build 29-Sep-2019 15:50:27 Step 6/6 : ONBUILD COPY extractor_info.json /home/clowder/ build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> 20aa0e0c435d build 29-Sep-2019 15:50:27 Successfully built 20aa0e0c435d build 29-Sep-2019 15:50:27 Successfully tagged clowder/extractors-binary-preview-python3:onbuild build 29-Sep-2019 15:50:27 Sending build context to Docker daemon 6.656kB build 29-Sep-2019 15:50:27 build 29-Sep-2019 15:50:27 Step 1/11 : ARG PYCLOWDER_PYTHON="" build 29-Sep-2019 15:50:27 Step 2/11 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest build 29-Sep-2019 15:50:27 ---> dbdd232f07b4 build 29-Sep-2019 15:50:27 Step 3/11 : ENV EXTRACTION_FUNC="" build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> d7d6d4125344 build 29-Sep-2019 15:50:27 Step 4/11 : ENV EXTRACTION_MODULE="" build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> 8e9a72818545 build 29-Sep-2019 15:50:27 Step 5/11 : COPY simple_extractor.py . build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> 189b9db19962 build 29-Sep-2019 15:50:27 Step 6/11 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> 2afe9b7381a0 build 29-Sep-2019 15:50:27 Step 7/11 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> 09c7f327a0df build 29-Sep-2019 15:50:27 Step 8/11 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> b9cf328b1723 build 29-Sep-2019 15:50:27 Step 9/11 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> 432baf1b604f build 29-Sep-2019 15:50:27 Step 10/11 : ONBUILD ADD . /home/clowder/ build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> 4aef7981a9ae build 29-Sep-2019 15:50:27 Step 11/11 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> 11bea3ce7d3e build 29-Sep-2019 15:50:27 Successfully built 11bea3ce7d3e build 29-Sep-2019 15:50:27 Successfully tagged clowder/extractors-simple-extractor-python3:onbuild build 29-Sep-2019 15:50:27 Sending build context to Docker daemon 13.31kB build 29-Sep-2019 15:50:27 build 29-Sep-2019 15:50:27 Step 1/11 : ARG PYCLOWDER_PYTHON="" build 29-Sep-2019 15:50:27 Step 2/11 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest build 29-Sep-2019 15:50:27 ---> dbdd232f07b4 build 29-Sep-2019 15:50:27 Step 3/11 : ENV R_SCRIPT="" R_FUNCTION="" build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> fd32592c495b build 29-Sep-2019 15:50:27 Step 4/11 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> 4252bcbd9a94 build 29-Sep-2019 15:50:27 Step 5/11 : COPY r_extractor.py launcher.R /home/clowder/ build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> 545d03535e12 build 29-Sep-2019 15:50:27 Step 6/11 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> 9890cd215612 build 29-Sep-2019 15:50:27 Step 7/11 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> 79de7b91a8f9 build 29-Sep-2019 15:50:27 Step 8/11 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> c97a39b37c5d build 29-Sep-2019 15:50:27 Step 9/11 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> 210d3f2478aa build 29-Sep-2019 15:50:27 Step 10/11 : ONBUILD ADD . /home/clowder/ build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> d061af52dea9 build 29-Sep-2019 15:50:27 Step 11/11 : CMD python r_extractor.py build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> 74c8304a2dc5 build 29-Sep-2019 15:50:27 Successfully built 74c8304a2dc5 build 29-Sep-2019 15:50:27 Successfully tagged clowder/extractors-simple-r-extractor-python3:onbuild build 29-Sep-2019 15:50:27 Sending build context to Docker daemon 9.216kB build 29-Sep-2019 15:50:27 build 29-Sep-2019 15:50:27 Step 1/3 : ARG PYCLOWDER_PYTHON="" build 29-Sep-2019 15:50:27 Step 2/3 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:onbuild build 29-Sep-2019 15:50:27 # Executing 5 build triggers build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> 4ace4a406909 build 29-Sep-2019 15:50:27 Step 3/3 : ENV MAIN_SCRIPT="wordcount.py" build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> ec4edd540e00 build 29-Sep-2019 15:50:27 Successfully built ec4edd540e00 build 29-Sep-2019 15:50:27 Successfully tagged clowder/extractors-wordcount:latest build 29-Sep-2019 15:50:27 Sending build context to Docker daemon 5.12kB build 29-Sep-2019 15:50:27 build 29-Sep-2019 15:50:27 Step 1/4 : ARG PYCLOWDER_PYTHON="" build 29-Sep-2019 15:50:27 Step 2/4 : FROM clowder/extractors-simple-extractor${PYCLOWDER_PYTHON}:onbuild build 29-Sep-2019 15:50:27 # Executing 5 build triggers build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> ec2b8972066c build 29-Sep-2019 15:50:27 Step 3/4 : ENV EXTRACTION_FUNC="wordcount" build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> 6133b52612a1 build 29-Sep-2019 15:50:27 Step 4/4 : ENV EXTRACTION_MODULE="wordcount" build 29-Sep-2019 15:50:27 ---> Using cache build 29-Sep-2019 15:50:27 ---> bb36ea74aa16 build 29-Sep-2019 15:50:27 Successfully built bb36ea74aa16 build 29-Sep-2019 15:50:28 Successfully tagged clowder/extractors-wordcount-simple-extractor:latest build 29-Sep-2019 15:50:28 Sending build context to Docker daemon 5.12kB build 29-Sep-2019 15:50:28 build 29-Sep-2019 15:50:28 Step 1/3 : ARG PYCLOWDER_PYTHON="" build 29-Sep-2019 15:50:28 Step 2/3 : FROM clowder/extractors-simple-r-extractor${PYCLOWDER_PYTHON}:onbuild build 29-Sep-2019 15:50:28 # Executing 5 build triggers build 29-Sep-2019 15:50:28 ---> Using cache build 29-Sep-2019 15:50:28 ---> Using cache build 29-Sep-2019 15:50:28 ---> Using cache build 29-Sep-2019 15:50:28 ---> Using cache build 29-Sep-2019 15:50:28 ---> Using cache build 29-Sep-2019 15:50:28 ---> 2ed9758f2259 build 29-Sep-2019 15:50:28 Step 3/3 : ENV R_SCRIPT="wordcount.R" R_FUNCTION="process_file" build 29-Sep-2019 15:50:28 ---> Using cache build 29-Sep-2019 15:50:28 ---> db8e65df98f6 build 29-Sep-2019 15:50:28 Successfully built db8e65df98f6 build 29-Sep-2019 15:50:28 Successfully tagged clowder/extractors-wordcount-simple-r-extractor:latest build 29-Sep-2019 15:50:28 Sending build context to Docker daemon 8.192kB build 29-Sep-2019 15:50:28 build 29-Sep-2019 15:50:28 Step 1/7 : FROM python:3.5 build 29-Sep-2019 15:50:28 ---> 67f4589d3c88 build 29-Sep-2019 15:50:28 Step 2/7 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq/%2F" build 29-Sep-2019 15:50:28 ---> Using cache build 29-Sep-2019 15:50:28 ---> 780c06a38965 build 29-Sep-2019 15:50:28 Step 3/7 : EXPOSE 9999 build 29-Sep-2019 15:50:28 ---> Using cache build 29-Sep-2019 15:50:28 ---> e35b498b2fe3 build 29-Sep-2019 15:50:28 Step 4/7 : RUN pip install pika==0.11.2 requests==2.18.4 build 29-Sep-2019 15:50:28 ---> Using cache build 29-Sep-2019 15:50:28 ---> bc90da966d93 build 29-Sep-2019 15:50:28 Step 5/7 : WORKDIR /src build 29-Sep-2019 15:50:28 ---> Using cache build 29-Sep-2019 15:50:28 ---> c4f7ae366418 build 29-Sep-2019 15:50:28 Step 6/7 : COPY monitor.py /src/ build 29-Sep-2019 15:50:28 ---> Using cache build 29-Sep-2019 15:50:28 ---> f20e0c8c8326 build 29-Sep-2019 15:50:28 Step 7/7 : CMD python monitor.py build 29-Sep-2019 15:50:28 ---> Using cache build 29-Sep-2019 15:50:28 ---> ea2efd4a43d1 build 29-Sep-2019 15:50:28 Successfully built ea2efd4a43d1 build 29-Sep-2019 15:50:28 Successfully tagged clowder/extractors-monitor:latest simple 29-Sep-2019 15:50:28 Finished task 'docker build and push' with result: Success simple 29-Sep-2019 15:50:28 Running post build plugin 'Docker Container Cleanup' simple 29-Sep-2019 15:50:28 Running post build plugin 'NCover Results Collector' simple 29-Sep-2019 15:50:28 Running post build plugin 'Clover Results Collector' simple 29-Sep-2019 15:50:28 Running post build plugin 'npm Cache Cleanup' simple 29-Sep-2019 15:50:28 Running post build plugin 'Artifact Copier' simple 29-Sep-2019 15:50:28 Finalising the build... simple 29-Sep-2019 15:50:28 Stopping timer. simple 29-Sep-2019 15:50:28 Build CATS-PYC-JOB1-25 completed. simple 29-Sep-2019 15:50:28 Running on server: post build plugin 'NCover Results Collector' simple 29-Sep-2019 15:50:28 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 29-Sep-2019 15:50:28 Running on server: post build plugin 'Clover Delta Calculator' simple 29-Sep-2019 15:50:28 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 29-Sep-2019 15:50:28 All post build plugins have finished simple 29-Sep-2019 15:50:28 Generating build results summary... simple 29-Sep-2019 15:50:28 Saving build results to disk... simple 29-Sep-2019 15:50:28 Logging substituted variables... simple 29-Sep-2019 15:50:28 Indexing build results... simple 29-Sep-2019 15:50:28 Finished building CATS-PYC-JOB1-25.