simple 18-Apr-2018 16:45:34 Build Clowder - pyclowder2 - Default Job #70 (CATS-PYC2-JOB1-70) started building on agent buildserver-1.os.ncsa.edu simple 18-Apr-2018 16:45:34 Remote agent on host buildserver-1.os.ncsa.edu simple 18-Apr-2018 16:45:34 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2-JOB1 simple 18-Apr-2018 16:45:34 Executing build Clowder - pyclowder2 - Default Job #70 (CATS-PYC2-JOB1-70) simple 18-Apr-2018 16:45:34 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 18-Apr-2018 16:45:34 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2-JOB1 simple 18-Apr-2018 16:45:34 Updating source code to revision: a8d8eac940bc94eafbb0514ca11a7fbd1fd1b1f0 simple 18-Apr-2018 16:45:34 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2-JOB1/.git'. simple 18-Apr-2018 16:45:34 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2-JOB1/.git/ simple 18-Apr-2018 16:45:34 Fetching 'refs/heads/master' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git'. Will try to do a shallow fetch. simple 18-Apr-2018 16:45:34 Warning: Permanently added '[127.0.0.1]:34990' (RSA) to the list of known hosts. simple 18-Apr-2018 16:45:34 From ssh://127.0.0.1:34990/cats/pyclowder2 simple 18-Apr-2018 16:45:34 * [new branch] master -> master simple 18-Apr-2018 16:45:34 Checking out revision a8d8eac940bc94eafbb0514ca11a7fbd1fd1b1f0. simple 18-Apr-2018 16:45:34 Already on 'master' simple 18-Apr-2018 16:45:34 Updated source code to revision: a8d8eac940bc94eafbb0514ca11a7fbd1fd1b1f0 simple 18-Apr-2018 16:45:34 Finished task 'Checkout Default Repository' with result: Success simple 18-Apr-2018 16:45:34 Running pre-build action: VCS Version Collector simple 18-Apr-2018 16:45:34 Starting task 'pytest' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 18-Apr-2018 16:45:34 Beginning to execute external process for build 'Clowder - pyclowder2 - Default Job #70 (CATS-PYC2-JOB1-70)'\n ... running command line: \n/home/bamboo/bamboo-agent-home/temp/CATS-PYC2-JOB1-70-ScriptBuildTask-2658214345621229304.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2-JOB1\n ... using extra environment variables: 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build 18-Apr-2018 16:45:35 New python executable in /tmp/virtualenv/pyclowder2/bin/python2 build 18-Apr-2018 16:45:35 Also creating executable in /tmp/virtualenv/pyclowder2/bin/python build 18-Apr-2018 16:45:37 Installing setuptools, pkg_resources, pip, wheel...done. build 18-Apr-2018 16:45:37 Running virtualenv with interpreter /usr/bin/python2 build 18-Apr-2018 16:45:37 Collecting enum34==1.1.6 (from -r requirements.txt (line 1)) build 18-Apr-2018 16:45:37 Using cached https://files.pythonhosted.org/packages/c5/db/e56e6b4bbac7c4a06de1c50de6fe1ef3810018ae11732a50f15f62c7d050/enum34-1.1.6-py2-none-any.whl build 18-Apr-2018 16:45:37 Collecting pika==0.11.2 (from -r requirements.txt (line 2)) build 18-Apr-2018 16:45:37 Using cached https://files.pythonhosted.org/packages/76/b4/0ada6918ac79ce4d8d45d0ba436ee21a1ef685047fb1dde4d2de0178b327/pika-0.11.2-py2.py3-none-any.whl build 18-Apr-2018 16:45:37 Collecting PyYAML==3.12 (from -r requirements.txt (line 3)) build 18-Apr-2018 16:45:37 Collecting requests==2.18.4 (from -r requirements.txt (line 4)) build 18-Apr-2018 16:45:37 Using cached https://files.pythonhosted.org/packages/49/df/50aa1999ab9bde74656c2919d9c0c085fd2b3775fd3eca826012bef76d8c/requests-2.18.4-py2.py3-none-any.whl build 18-Apr-2018 16:45:37 Collecting wheel==0.24.0 (from -r requirements.txt (line 5)) build 18-Apr-2018 16:45:37 Using cached https://files.pythonhosted.org/packages/e8/14/eaaac12b0432c984a27ad0050a5a0bedc6135df35a0f5f1f35228faf12d4/wheel-0.24.0-py2.py3-none-any.whl build 18-Apr-2018 16:45:37 Collecting urllib3==1.22 (from -r requirements.txt (line 6)) build 18-Apr-2018 16:45:38 Using cached https://files.pythonhosted.org/packages/63/cb/6965947c13a94236f6d4b8223e21beb4d576dc72e8130bd7880f600839b8/urllib3-1.22-py2.py3-none-any.whl build 18-Apr-2018 16:45:38 Collecting pytest==3.0.3 (from -r requirements.txt (line 7)) build 18-Apr-2018 16:45:38 Using cached 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pika-0.11.2 py-1.5.3 pytest-3.0.3 pytest-cache-1.0 pytest-pep8-1.0.6 requests-2.18.4 urllib3-1.22 wheel-0.24.0 build 18-Apr-2018 16:45:39 ============================= test session starts ============================== build 18-Apr-2018 16:45:39 platform linux2 -- Python 2.7.12, pytest-3.0.3, py-1.5.3, pluggy-0.4.0 build 18-Apr-2018 16:45:39 rootdir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2-JOB1, inifile: setup.cfg build 18-Apr-2018 16:45:39 plugins: pep8-1.0.6 build 18-Apr-2018 16:45:39 collected 16 items build 18-Apr-2018 16:45:39 build 18-Apr-2018 16:45:39 setup.py . build 18-Apr-2018 16:45:39 docs/source/conf.py . build 18-Apr-2018 16:45:39 pyclowder/__init__.py . build 18-Apr-2018 16:45:39 pyclowder/client.py . build 18-Apr-2018 16:45:39 pyclowder/collections.py . build 18-Apr-2018 16:45:39 pyclowder/connectors.py . build 18-Apr-2018 16:45:39 pyclowder/datasets.py . build 18-Apr-2018 16:45:39 pyclowder/extractors.py . build 18-Apr-2018 16:45:39 pyclowder/files.py . build 18-Apr-2018 16:45:39 pyclowder/geostreams.py . build 18-Apr-2018 16:45:39 pyclowder/sections.py . build 18-Apr-2018 16:45:39 pyclowder/utils.py . build 18-Apr-2018 16:45:39 sample-extractors/binary-preview/binary_extractor.py . build 18-Apr-2018 16:45:39 sample-extractors/echo/echo.py . build 18-Apr-2018 16:45:39 sample-extractors/wordcount/wordcount.py . build 18-Apr-2018 16:45:39 tests/clientTest.py . build 18-Apr-2018 16:45:39 build 18-Apr-2018 16:45:39 generated xml file: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2-JOB1/test-reports/results.xml build 18-Apr-2018 16:45:39 ========================== 16 passed in 0.33 seconds =========================== simple 18-Apr-2018 16:45:39 Finished task 'pytest' with result: Success simple 18-Apr-2018 16:45:39 Starting task 'docker build and push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 18-Apr-2018 16:45:39 Beginning to execute external process for build 'Clowder 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- pyclowder2 - Default 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build 18-Apr-2018 16:45:39 Sending build context to Docker daemon 212kB build 18-Apr-2018 16:45:39 build 18-Apr-2018 16:45:40 Step 1/8 : FROM ubuntu:16.04 build 18-Apr-2018 16:45:40 ---> c9d990395902 build 18-Apr-2018 16:45:40 Step 2/8 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="https://clowder.ncsa.illinois.edu/extractors" MAIN_SCRIPT="" build 18-Apr-2018 16:45:40 ---> Using cache build 18-Apr-2018 16:45:40 ---> 5c9ccfd18309 build 18-Apr-2018 16:45:40 Step 3/8 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* build 18-Apr-2018 16:45:40 ---> Using cache build 18-Apr-2018 16:45:40 ---> fb04c0d2a389 build 18-Apr-2018 16:45:40 Step 4/8 : COPY pyclowder /tmp/pyclowder/pyclowder build 18-Apr-2018 16:45:40 ---> Using cache build 18-Apr-2018 16:45:40 ---> 93abe67397b9 build 18-Apr-2018 16:45:40 Step 5/8 : COPY setup.py description.rst /tmp/pyclowder/ build 18-Apr-2018 16:45:40 ---> Using cache build 18-Apr-2018 16:45:40 ---> e09554111e4b build 18-Apr-2018 16:45:40 Step 6/8 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder build 18-Apr-2018 16:45:40 ---> Using cache build 18-Apr-2018 16:45:40 ---> 792462113402 build 18-Apr-2018 16:45:40 Step 7/8 : WORKDIR /home/clowder build 18-Apr-2018 16:45:40 ---> Using cache build 18-Apr-2018 16:45:40 ---> 599e55d54abe build 18-Apr-2018 16:45:40 Step 8/8 : CMD python "./${MAIN_SCRIPT}" build 18-Apr-2018 16:45:40 ---> Using cache build 18-Apr-2018 16:45:40 ---> f2d8b51eccc3 build 18-Apr-2018 16:45:40 Successfully built f2d8b51eccc3 build 18-Apr-2018 16:45:40 Successfully tagged clowder/pyclowder:latest build 18-Apr-2018 16:45:40 Sending build context to Docker daemon 210.4kB build 18-Apr-2018 16:45:40 build 18-Apr-2018 16:45:40 Step 1/6 : FROM clowder/pyclowder build 18-Apr-2018 16:45:40 ---> f2d8b51eccc3 build 18-Apr-2018 16:45:40 Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 18-Apr-2018 16:45:40 ---> Using cache build 18-Apr-2018 16:45:40 ---> 443eaee61a66 build 18-Apr-2018 16:45:40 Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 18-Apr-2018 16:45:40 ---> Using cache build 18-Apr-2018 16:45:40 ---> ddf4a6edd31c build 18-Apr-2018 16:45:40 Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 18-Apr-2018 16:45:40 ---> Using cache build 18-Apr-2018 16:45:40 ---> ae50c07cbd4a build 18-Apr-2018 16:45:40 Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 18-Apr-2018 16:45:40 ---> Using cache build 18-Apr-2018 16:45:40 ---> 5ced522ecf95 build 18-Apr-2018 16:45:40 Step 6/6 : ONBUILD ADD . /home/clowder/ build 18-Apr-2018 16:45:40 ---> Using cache build 18-Apr-2018 16:45:40 ---> a346ec5464c4 build 18-Apr-2018 16:45:40 Successfully built a346ec5464c4 build 18-Apr-2018 16:45:40 Successfully tagged clowder/pyclowder:onbuild build 18-Apr-2018 16:45:40 Sending build context to Docker daemon 12.29kB build 18-Apr-2018 16:45:40 build 18-Apr-2018 16:45:40 Step 1/5 : FROM clowder/pyclowder:onbuild build 18-Apr-2018 16:45:40 # Executing 5 build triggers build 18-Apr-2018 16:45:40 ---> Using cache build 18-Apr-2018 16:45:40 ---> Using cache build 18-Apr-2018 16:45:40 ---> Using cache build 18-Apr-2018 16:45:40 ---> Using cache build 18-Apr-2018 16:45:40 ---> Using cache build 18-Apr-2018 16:45:40 ---> c8577eca2eb0 build 18-Apr-2018 16:45:40 Step 2/5 : ENV MAIN_SCRIPT="binary_extractor.py" RABBITMQ_QUEUE="" IMAGE_BINARY="" IMAGE_TYPE="" IMAGE_THUMBNAIL_COMMAND="" IMAGE_PREVIEW_COMMAND="" PREVIEW_BINARY="" PREVIEW_TYPE="" PREVIEW_COMMAND="" build 18-Apr-2018 16:45:40 ---> Using cache build 18-Apr-2018 16:45:40 ---> 392c3bfc68b5 build 18-Apr-2018 16:45:40 Step 3/5 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 18-Apr-2018 16:45:40 ---> Using cache build 18-Apr-2018 16:45:40 ---> 575115af93e5 build 18-Apr-2018 16:45:40 Step 4/5 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 18-Apr-2018 16:45:40 ---> Using cache build 18-Apr-2018 16:45:40 ---> e2fa16ed5637 build 18-Apr-2018 16:45:40 Step 5/5 : ONBUILD COPY extractor_info.json /home/clowder/ build 18-Apr-2018 16:45:40 ---> Using cache build 18-Apr-2018 16:45:40 ---> 9fd358a66c21 build 18-Apr-2018 16:45:40 Successfully built 9fd358a66c21 build 18-Apr-2018 16:45:40 Successfully tagged clowder/extractors-binary-preview:onbuild build 18-Apr-2018 16:45:40 Sending build context to Docker daemon 9.216kB build 18-Apr-2018 16:45:40 build 18-Apr-2018 16:45:40 Step 1/2 : FROM clowder/pyclowder:onbuild build 18-Apr-2018 16:45:40 # Executing 5 build triggers build 18-Apr-2018 16:45:40 ---> Using cache build 18-Apr-2018 16:45:40 ---> Using cache build 18-Apr-2018 16:45:40 ---> Using cache build 18-Apr-2018 16:45:40 ---> Using cache build 18-Apr-2018 16:45:40 ---> Using cache build 18-Apr-2018 16:45:40 ---> 0227191b5a17 build 18-Apr-2018 16:45:40 Step 2/2 : ENV MAIN_SCRIPT="wordcount.py" build 18-Apr-2018 16:45:40 ---> Using cache build 18-Apr-2018 16:45:40 ---> d177468074f1 build 18-Apr-2018 16:45:40 Successfully built d177468074f1 build 18-Apr-2018 16:45:40 Successfully tagged clowder/extractors-wordcount:latest simple 18-Apr-2018 16:45:40 Finished task 'docker build and push' with result: Success simple 18-Apr-2018 16:45:40 Starting task 'test results' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit' simple 18-Apr-2018 16:45:40 Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2-JOB1... simple 18-Apr-2018 16:45:40 Finished task 'test results' with result: Success simple 18-Apr-2018 16:45:40 Running post build plugin 'Docker Container Cleanup' simple 18-Apr-2018 16:45:40 Running post build plugin 'NCover Results Collector' simple 18-Apr-2018 16:45:40 Running post build plugin 'Clover Results Collector' simple 18-Apr-2018 16:45:40 Running post build plugin 'npm Cache Cleanup' simple 18-Apr-2018 16:45:40 Running post build plugin 'Artifact Copier' simple 18-Apr-2018 16:45:40 Finalising the build... simple 18-Apr-2018 16:45:40 Stopping timer. simple 18-Apr-2018 16:45:40 Build CATS-PYC2-JOB1-70 completed. simple 18-Apr-2018 16:45:40 Running on server: post build plugin 'NCover Results Collector' simple 18-Apr-2018 16:45:40 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 18-Apr-2018 16:45:40 Running on server: post build plugin 'Clover Delta Calculator' simple 18-Apr-2018 16:45:40 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 18-Apr-2018 16:45:40 All post build plugins have finished simple 18-Apr-2018 16:45:40 Generating build results summary... simple 18-Apr-2018 16:45:40 Saving build results to disk... simple 18-Apr-2018 16:45:40 Logging substituted variables... simple 18-Apr-2018 16:45:40 Indexing build results... simple 18-Apr-2018 16:45:40 Finished building CATS-PYC2-JOB1-70.