simple 31-Jul-2019 15:46:11 Build Clowder - pyclowder2 - hotfix-extractor-info.json - Default Job #2 (CATS-PYC2100-JOB1-2) started building on agent buildserver-1.os.ncsa.edu simple 31-Jul-2019 15:46:11 Remote agent on host buildserver-1.os.ncsa.edu simple 31-Jul-2019 15:46:11 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2100-JOB1 simple 31-Jul-2019 15:46:11 Executing build Clowder - pyclowder2 - hotfix-extractor-info.json - Default Job #2 (CATS-PYC2100-JOB1-2) simple 31-Jul-2019 15:46:11 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 31-Jul-2019 15:46:11 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2100-JOB1 simple 31-Jul-2019 15:46:11 Updating source code to revision: 4e396e5798bd16e263993fdb0155067fc4b8e96f simple 31-Jul-2019 15:46:11 Enforcing full fetch as requested revision has not been found on the configured branch simple 31-Jul-2019 15:46:11 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2100-JOB1/.git'. simple 31-Jul-2019 15:46:11 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2100-JOB1/.git/ simple 31-Jul-2019 15:46:11 Fetching 'refs/heads/*' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git'. Will try to do a shallow fetch. simple 31-Jul-2019 15:46:11 Warning: Permanently added '[127.0.0.1]:36076' (RSA) to the list of known hosts. simple 31-Jul-2019 15:46:13 From ssh://127.0.0.1:36076/cats/pyclowder2 simple 31-Jul-2019 15:46:13 * [new branch] Add-redirect-option -> Add-redirect-option simple 31-Jul-2019 15:46:13 * [new branch] CATS-784-python3-compatible -> CATS-784-python3-compatible simple 31-Jul-2019 15:46:13 * [new branch] CATSPYC-19-add-anonymous-email-receiver-on-the-email-message -> CATSPYC-19-add-anonymous-email-receiver-on-the-email-message simple 31-Jul-2019 15:46:13 * [new branch] CATSPYC-20-add-real-email-address-in-the-email-message-to-field -> CATSPYC-20-add-real-email-address-in-the-email-message-to-field simple 31-Jul-2019 15:46:13 * [new branch] SYN-63-Remove-data-from-geoserver -> SYN-63-Remove-data-from-geoserver simple 31-Jul-2019 15:46:13 * [new branch] add-geostream-search-by-location -> add-geostream-search-by-location simple 31-Jul-2019 15:46:13 * [new branch] add-get-or-create-methods -> add-get-or-create-methods simple 31-Jul-2019 15:46:13 * [new branch] add-sphinx-docs -> add-sphinx-docs simple 31-Jul-2019 15:46:13 * [new branch] boxhack -> boxhack simple 31-Jul-2019 15:46:13 * [new branch] bugfix/BD-2344-update-pip-in-simple-extractor-wrapper -> bugfix/BD-2344-update-pip-in-simple-extractor-wrapper simple 31-Jul-2019 15:46:13 * [new branch] bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding -> bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding simple 31-Jul-2019 15:46:13 * [new branch] bugfix/CATS-729-copy-dataset-extractor-fix -> bugfix/CATS-729-copy-dataset-extractor-fix simple 31-Jul-2019 15:46:13 * [new branch] bugfix/GLGVO-343-parser-vm-spawning-many-jobs-update -> bugfix/GLGVO-343-parser-vm-spawning-many-jobs-update simple 31-Jul-2019 15:46:13 * [new branch] check_duplicate-flag -> check_duplicate-flag simple 31-Jul-2019 15:46:13 * [new branch] clowder-clients-clean -> clowder-clients-clean simple 31-Jul-2019 15:46:13 * [new branch] develop -> develop simple 31-Jul-2019 15:46:13 * [new branch] extractor-bugfix -> extractor-bugfix simple 31-Jul-2019 15:46:13 * [new branch] feature/CATSPYC-17-add-email-notification-in-pyclowder2 -> feature/CATSPYC-17-add-email-notification-in-pyclowder2 simple 31-Jul-2019 15:46:13 * [new branch] feature/GEOD-927-fix-add-test-for-pyclowder2-geostreams -> feature/GEOD-927-fix-add-test-for-pyclowder2-geostreams simple 31-Jul-2019 15:46:13 * [new branch] geostreams -> geostreams simple 31-Jul-2019 15:46:13 * [new branch] geostreams_max_draft -> geostreams_max_draft simple 31-Jul-2019 15:46:13 * [new branch] hotfix/extractor-info.json -> hotfix/extractor-info.json simple 31-Jul-2019 15:46:13 * [new branch] kgm-documentation-tweaks -> kgm-documentation-tweaks simple 31-Jul-2019 15:46:13 * [new branch] long-process-fixes -> long-process-fixes simple 31-Jul-2019 15:46:13 * [new branch] master -> master simple 31-Jul-2019 15:46:13 * [new branch] rename_functions -> rename_functions simple 31-Jul-2019 15:46:13 * [new branch] seven-miles-changes -> seven-miles-changes simple 31-Jul-2019 15:46:13 * [new tag] 2.0.2 -> 2.0.2 simple 31-Jul-2019 15:46:13 * [new tag] v2.0.3 -> v2.0.3 simple 31-Jul-2019 15:46:13 * [new tag] v2.1.0 -> v2.1.0 simple 31-Jul-2019 15:46:13 * [new tag] v2.1.1 -> v2.1.1 simple 31-Jul-2019 15:46:13 * [new tag] v2.2.0 -> v2.2.0 simple 31-Jul-2019 15:46:13 Checking out revision 4e396e5798bd16e263993fdb0155067fc4b8e96f. simple 31-Jul-2019 15:46:13 Switched to branch 'hotfix/extractor-info.json' simple 31-Jul-2019 15:46:13 Updated source code to revision: 4e396e5798bd16e263993fdb0155067fc4b8e96f simple 31-Jul-2019 15:46:13 Finished task 'Checkout Default Repository' with result: Success simple 31-Jul-2019 15:46:13 Running pre-build action: VCS Version Collector simple 31-Jul-2019 15:46:13 Starting task 'python 2 - pytest' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 31-Jul-2019 15:46:13 Beginning to execute external process for build 'Clowder - pyclowder2 - hotfix-extractor-info.json - Default Job #2 (CATS-PYC2100-JOB1-2)'\n ... running command line: \n/home/bamboo/bamboo-agent-home/temp/CATS-PYC2100-JOB1-2-ScriptBuildTask-547919805548607799.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2100-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=hotfix/extractor-info.json\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_planRepository_1_branchDisplayName=hotfix/extractor-info.json\nbamboo_repository_revision_number=4e396e5798bd16e263993fdb0155067fc4b8e96f\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC2100-JOB1-2\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2100-JOB1\nbamboo_planRepository_1_name=pyclowder2\nbamboo_buildKey=CATS-PYC2100-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=hotfix-extractor-info.json\nbamboo_repository_173735954_git_branch=hotfix/extractor-info.json\nbamboo_planRepository_name=pyclowder2\nbamboo_buildNumber=2\nbamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC2100-JOB1-2\nbamboo_repository_173735954_branch_name=hotfix/extractor-info.json\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_agentId=140673027\nbamboo_planName=Clowder - 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pyclowder/extractors.py . build 31-Jul-2019 15:46:24 pyclowder/files.py . build 31-Jul-2019 15:46:24 pyclowder/geostreams.py . build 31-Jul-2019 15:46:24 pyclowder/sections.py . build 31-Jul-2019 15:46:24 pyclowder/utils.py . build 31-Jul-2019 15:46:24 sample-extractors/binary-preview/binary_extractor.py . build 31-Jul-2019 15:46:24 sample-extractors/echo/echo.py . build 31-Jul-2019 15:46:24 sample-extractors/simple-extractor/simple_extractor.py . build 31-Jul-2019 15:46:24 sample-extractors/simple-r-extractor/r_extractor.py . build 31-Jul-2019 15:46:24 sample-extractors/wordcount/wordcount.py . build 31-Jul-2019 15:46:24 sample-extractors/wordcount-simple-extractor/wordcount.py . build 31-Jul-2019 15:46:24 tests/clientTest.py . build 31-Jul-2019 15:46:24 build 31-Jul-2019 15:46:24 - generated xml file: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2100-JOB1/test-reports/results-p2.xml - build 31-Jul-2019 15:46:24 ========================== 20 passed in 0.44 seconds 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https://files.pythonhosted.org/packages/ad/aa/25fcbded2ab4ed4ff3071d1e000cd4f8f9c65653d2d7157dd105a8e81d42/importlib_metadata-0.19-py2.py3-none-any.whl build 31-Jul-2019 15:46:31 Collecting execnet>=1.1.dev1 (from pytest-cache->pytest-pep8==1.0.6->-r requirements.txt (line 8)) build 31-Jul-2019 15:46:31 Using cached https://files.pythonhosted.org/packages/9a/73/5be9d235327b3770c330bed707766c8885e8157577db85f11b874b26da34/execnet-1.6.1-py2.py3-none-any.whl build 31-Jul-2019 15:46:31 Collecting zipp>=0.5 (from importlib-metadata>=0.12->pluggy>=0.7->pytest==4.3.1->-r requirements.txt (line 7)) build 31-Jul-2019 15:46:31 Using cached https://files.pythonhosted.org/packages/da/bd/1a5fdf15aa44231fd09f63ecf175b60f057ae37ec65b343bb009364923f3/zipp-0.5.2-py2.py3-none-any.whl build 31-Jul-2019 15:46:31 Collecting apipkg>=1.4 (from execnet>=1.1.dev1->pytest-cache->pytest-pep8==1.0.6->-r requirements.txt (line 8)) build 31-Jul-2019 15:46:31 Using cached https://files.pythonhosted.org/packages/67/08/4815a09603fc800209431bec5b8bd2acf2f95abdfb558a44a42507fb94da/apipkg-1.5-py2.py3-none-any.whl build 31-Jul-2019 15:46:31 Installing collected packages: enum34, pika, PyYAML, chardet, certifi, idna, urllib3, requests, wheel, atomicwrites, py, six, pathlib2, more-itertools, attrs, zipp, importlib-metadata, pluggy, pytest, apipkg, execnet, pytest-cache, pep8, pytest-pep8 build 31-Jul-2019 15:46:31 Found existing installation: wheel 0.33.4 build 31-Jul-2019 15:46:31 Uninstalling wheel-0.33.4: build 31-Jul-2019 15:46:31 Successfully uninstalled wheel-0.33.4 build 31-Jul-2019 15:46:32 Successfully installed PyYAML-5.1 apipkg-1.5 atomicwrites-1.3.0 attrs-19.1.0 certifi-2019.6.16 chardet-3.0.4 enum34-1.1.6 execnet-1.6.1 idna-2.8 importlib-metadata-0.19 more-itertools-7.2.0 pathlib2-2.3.4 pep8-1.7.1 pika-1.0.0 pluggy-0.12.0 py-1.8.0 pytest-4.3.1 pytest-cache-1.0 pytest-pep8-1.0.6 requests-2.21.0 six-1.12.0 urllib3-1.24.1 wheel-0.33.1 zipp-0.5.2 build 31-Jul-2019 15:46:33 ============================= test session starts ============================== build 31-Jul-2019 15:46:33 platform linux -- Python 3.5.2, pytest-4.3.1, py-1.8.0, pluggy-0.12.0 build 31-Jul-2019 15:46:33 rootdir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2100-JOB1, inifile: setup.cfg build 31-Jul-2019 15:46:33 plugins: pep8-1.0.6 build 31-Jul-2019 15:46:33 collected 20 items build 31-Jul-2019 15:46:33 build 31-Jul-2019 15:46:33 setup.py . build 31-Jul-2019 15:46:33 contrib/monitor/monitor.py . build 31-Jul-2019 15:46:33 docs/source/conf.py . build 31-Jul-2019 15:46:33 pyclowder/__init__.py . build 31-Jul-2019 15:46:33 pyclowder/client.py . build 31-Jul-2019 15:46:33 pyclowder/collections.py . build 31-Jul-2019 15:46:33 pyclowder/connectors.py . build 31-Jul-2019 15:46:33 pyclowder/datasets.py . build 31-Jul-2019 15:46:33 pyclowder/extractors.py . build 31-Jul-2019 15:46:33 pyclowder/files.py . build 31-Jul-2019 15:46:33 pyclowder/geostreams.py . build 31-Jul-2019 15:46:33 pyclowder/sections.py . build 31-Jul-2019 15:46:33 pyclowder/utils.py . build 31-Jul-2019 15:46:33 sample-extractors/binary-preview/binary_extractor.py . build 31-Jul-2019 15:46:33 sample-extractors/echo/echo.py . build 31-Jul-2019 15:46:33 sample-extractors/simple-extractor/simple_extractor.py . build 31-Jul-2019 15:46:33 sample-extractors/simple-r-extractor/r_extractor.py . build 31-Jul-2019 15:46:33 sample-extractors/wordcount/wordcount.py . build 31-Jul-2019 15:46:33 sample-extractors/wordcount-simple-extractor/wordcount.py . build 31-Jul-2019 15:46:33 tests/clientTest.py . build 31-Jul-2019 15:46:33 build 31-Jul-2019 15:46:33 - generated xml file: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2100-JOB1/test-reports/results-p3.xml - build 31-Jul-2019 15:46:33 ========================== 20 passed in 0.55 seconds =========================== simple 31-Jul-2019 15:46:33 Finished task 'python 3 - pytest' with result: Success simple 31-Jul-2019 15:46:33 Starting task 'docker build' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 31-Jul-2019 15:46:33 Beginning to execute external process for build 'Clowder - pyclowder2 - hotfix-extractor-info.json - Default Job #2 (CATS-PYC2100-JOB1-2)'\n ... running command line: \n/bin/sh docker.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2100-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=hotfix/extractor-info.json\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_planRepository_1_branchDisplayName=hotfix/extractor-info.json\nbamboo_repository_revision_number=4e396e5798bd16e263993fdb0155067fc4b8e96f\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC2100-JOB1-2\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2100-JOB1\nbamboo_planRepository_1_name=pyclowder2\nbamboo_buildKey=CATS-PYC2100-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=hotfix-extractor-info.json\nbamboo_repository_173735954_git_branch=hotfix/extractor-info.json\nbamboo_planRepository_name=pyclowder2\nbamboo_buildNumber=2\nbamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC2100-JOB1-2\nbamboo_repository_173735954_branch_name=hotfix/extractor-info.json\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_agentId=140673027\nbamboo_planName=Clowder - pyclowder2 - hotfix-extractor-info.json\nbamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_6=/home/bamboo/bamboo-agent-home/temp/CATS-PYC2100-JOB1-2-ScriptBuildTask-535413529222781064.sh\nbamboo_shortPlanKey=PYC2100\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_shortJobKey=JOB1\nbamboo_planRepository_revision=4e396e5798bd16e263993fdb0155067fc4b8e96f\nbamboo_buildTimeStamp=2019-07-31T15:46:11.184-05:00\nbamboo_repository_previous_revision_number=616e22d71839f4d365c09e2fc0c5dd508df0850d\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_3=/home/bamboo/bamboo-agent-home/temp/CATS-PYC2100-JOB1-2-ScriptBuildTask-547919805548607799.sh\nbamboo_planRepository_previousRevision=616e22d71839f4d365c09e2fc0c5dd508df0850d\nbamboo_repository_git_branch=hotfix/extractor-info.json\nbamboo_buildResultKey=CATS-PYC2100-JOB1-2\nbamboo_repository_branch_name=hotfix/extractor-info.json\nbamboo_buildPlanName=Clowder - pyclowder2 - hotfix-extractor-info.json - Default Job\nbamboo_planRepository_1_revision=4e396e5798bd16e263993fdb0155067fc4b8e96f\nbamboo_repository_173735954_name=pyclowder2\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=pyclowder2\nbamboo_buildFailed=false\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_branch=hotfix/extractor-info.json\nbamboo_repository_173735954_git_username=\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_173735954_previous_revision_number=616e22d71839f4d365c09e2fc0c5dd508df0850d\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=616e22d71839f4d365c09e2fc0c5dd508df0850d\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_planRepository_branchDisplayName=hotfix/extractor-info.json\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=hotfix/extractor-info.json\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-173604882\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_173735954_revision_number=4e396e5798bd16e263993fdb0155067fc4b8e96f\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2100-JOB1\nbamboo_planKey=CATS-PYC2100\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_repository_173735954_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_planRepository_1_branchName=hotfix/extractor-info.json\n build 31-Jul-2019 15:46:34 Sending build context to Docker daemon 283.6kB build 31-Jul-2019 15:46:34 build 31-Jul-2019 15:46:34 Step 1/10 : FROM ubuntu:16.04 build 31-Jul-2019 15:46:34 16.04: Pulling from library/ubuntu build 31-Jul-2019 15:46:34 f7277927d38a: Pulling fs layer build 31-Jul-2019 15:46:34 8d3eac894db4: Pulling fs layer build 31-Jul-2019 15:46:34 edf72af6d627: Pulling fs layer build 31-Jul-2019 15:46:34 3e4f86211d23: Pulling fs layer build 31-Jul-2019 15:46:34 3e4f86211d23: Waiting build 31-Jul-2019 15:46:34 edf72af6d627: Verifying Checksum build 31-Jul-2019 15:46:34 edf72af6d627: Download complete build 31-Jul-2019 15:46:34 8d3eac894db4: Download complete build 31-Jul-2019 15:46:35 3e4f86211d23: Verifying Checksum build 31-Jul-2019 15:46:35 3e4f86211d23: Download complete build 31-Jul-2019 15:46:37 f7277927d38a: Verifying Checksum build 31-Jul-2019 15:46:37 f7277927d38a: Download complete build 31-Jul-2019 15:46:40 f7277927d38a: Pull complete build 31-Jul-2019 15:46:40 8d3eac894db4: Pull complete build 31-Jul-2019 15:46:41 edf72af6d627: Pull complete build 31-Jul-2019 15:46:42 3e4f86211d23: Pull complete build 31-Jul-2019 15:46:42 Digest: sha256:97b54e5692c27072234ff958a7442dde4266af21e7b688e7fca5dc5acc8ed7d9 build 31-Jul-2019 15:46:42 Status: Downloaded newer image for ubuntu:16.04 build 31-Jul-2019 15:46:42 ---> 5e13f8dd4c1a build 31-Jul-2019 15:46:42 Step 2/10 : ARG PYTHON_VERSION="2.7" build 31-Jul-2019 15:46:43 ---> Running in cfef6985d852 build 31-Jul-2019 15:46:43 Removing intermediate container cfef6985d852 build 31-Jul-2019 15:46:43 ---> 04f88167f8d4 build 31-Jul-2019 15:46:43 Step 3/10 : ENV PYTHON_VERSION=${PYTHON_VERSION} RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" build 31-Jul-2019 15:46:44 ---> Running in 258f4c6ede63 build 31-Jul-2019 15:46:44 Removing intermediate container 258f4c6ede63 build 31-Jul-2019 15:46:44 ---> 70308626aaad build 31-Jul-2019 15:46:44 Step 4/10 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python${PYTHON_VERSION} curl && if [ ! -e /usr/bin/python ]; then ln -s /usr/bin/python${PYTHON_VERSION} /usr/bin/python; fi && curl -k https://bootstrap.pypa.io/get-pip.py -o /tmp/get-pip.py && python /tmp/get-pip.py && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* /tmp/get-pip.py build 31-Jul-2019 15:46:44 ---> Running in 564d2836afbd build 31-Jul-2019 15:46:50 Reading package lists... build 31-Jul-2019 15:46:50 Building dependency tree... build 31-Jul-2019 15:46:50 Reading state information... build 31-Jul-2019 15:46:50 The following additional packages will be installed: build 31-Jul-2019 15:46:50 libasn1-8-heimdal libcurl3-gnutls libexpat1 libffi6 libgmp10 libgnutls30 build 31-Jul-2019 15:46:50 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal build 31-Jul-2019 15:46:50 libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal libidn11 libk5crypto3 build 31-Jul-2019 15:46:50 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 build 31-Jul-2019 15:46:50 libnettle6 libp11-kit0 libpython2.7-minimal libpython2.7-stdlib build 31-Jul-2019 15:46:50 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 build 31-Jul-2019 15:46:50 libssl1.0.0 libtasn1-6 libwind0-heimdal mime-support python2.7-minimal build 31-Jul-2019 15:46:50 Suggested packages: build 31-Jul-2019 15:46:50 gnutls-bin krb5-doc krb5-user python2.7-doc binutils binfmt-support build 31-Jul-2019 15:46:50 Recommended packages: build 31-Jul-2019 15:46:50 ca-certificates krb5-locales libsasl2-modules file build 31-Jul-2019 15:46:50 The following NEW packages will be installed: build 31-Jul-2019 15:46:50 curl libasn1-8-heimdal libcurl3-gnutls libexpat1 libffi6 libgmp10 build 31-Jul-2019 15:46:50 libgnutls30 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal build 31-Jul-2019 15:46:50 libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal build 31-Jul-2019 15:46:50 libidn11 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 build 31-Jul-2019 15:46:50 libkrb5support0 libldap-2.4-2 libnettle6 libp11-kit0 libpython2.7-minimal build 31-Jul-2019 15:46:50 libpython2.7-stdlib libroken18-heimdal librtmp1 libsasl2-2 build 31-Jul-2019 15:46:50 libsasl2-modules-db libsqlite3-0 libssl1.0.0 libtasn1-6 libwind0-heimdal build 31-Jul-2019 15:46:50 mime-support python2.7 python2.7-minimal build 31-Jul-2019 15:46:51 0 upgraded, 36 newly installed, 0 to remove and 0 not upgraded. build 31-Jul-2019 15:46:51 Need to get 8433 kB of archives. build 31-Jul-2019 15:46:51 After this operation, 30.8 MB of additional disk space will be used. build 31-Jul-2019 15:46:51 Get:1 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-minimal amd64 2.7.12-1ubuntu0~16.04.4 [339 kB] build 31-Jul-2019 15:46:51 Get:2 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7-minimal amd64 2.7.12-1ubuntu0~16.04.4 [1261 kB] build 31-Jul-2019 15:46:51 Get:3 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libexpat1 amd64 2.1.0-7ubuntu0.16.04.4 [71.4 kB] build 31-Jul-2019 15:46:51 Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 libffi6 amd64 3.2.1-4 [17.8 kB] build 31-Jul-2019 15:46:51 Get:5 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgmp10 amd64 2:6.1.0+dfsg-2 [240 kB] build 31-Jul-2019 15:46:52 Get:6 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libnettle6 amd64 3.2-1ubuntu0.16.04.1 [93.5 kB] build 31-Jul-2019 15:46:52 Get:7 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhogweed4 amd64 3.2-1ubuntu0.16.04.1 [136 kB] build 31-Jul-2019 15:46:52 Get:8 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libidn11 amd64 1.32-3ubuntu1.2 [46.5 kB] build 31-Jul-2019 15:46:52 Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libp11-kit0 amd64 0.23.2-5~ubuntu16.04.1 [105 kB] build 31-Jul-2019 15:46:52 Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtasn1-6 amd64 4.7-3ubuntu0.16.04.3 [43.5 kB] build 31-Jul-2019 15:46:52 Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgnutls30 amd64 3.4.10-4ubuntu1.5 [548 kB] build 31-Jul-2019 15:46:52 Get:12 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libsqlite3-0 amd64 3.11.0-1ubuntu1.2 [397 kB] build 31-Jul-2019 15:46:52 Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libssl1.0.0 amd64 1.0.2g-1ubuntu4.15 [1084 kB] build 31-Jul-2019 15:46:52 Get:14 http://archive.ubuntu.com/ubuntu xenial/main amd64 mime-support all 3.59ubuntu1 [31.0 kB] build 31-Jul-2019 15:46:52 Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libroken18-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [41.4 kB] build 31-Jul-2019 15:46:52 Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasn1-8-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [174 kB] build 31-Jul-2019 15:46:52 Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5support0 amd64 1.13.2+dfsg-5ubuntu2.1 [31.2 kB] build 31-Jul-2019 15:46:52 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libk5crypto3 amd64 1.13.2+dfsg-5ubuntu2.1 [81.3 kB] build 31-Jul-2019 15:46:52 Get:19 http://archive.ubuntu.com/ubuntu xenial/main amd64 libkeyutils1 amd64 1.5.9-8ubuntu1 [9904 B] build 31-Jul-2019 15:46:52 Get:20 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5-3 amd64 1.13.2+dfsg-5ubuntu2.1 [273 kB] build 31-Jul-2019 15:46:52 Get:21 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgssapi-krb5-2 amd64 1.13.2+dfsg-5ubuntu2.1 [120 kB] build 31-Jul-2019 15:46:52 Get:22 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhcrypto4-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [85.0 kB] build 31-Jul-2019 15:46:52 Get:23 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libheimbase1-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [29.3 kB] build 31-Jul-2019 15:46:52 Get:24 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libwind0-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [47.8 kB] build 31-Jul-2019 15:46:52 Get:25 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhx509-5-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [107 kB] build 31-Jul-2019 15:46:52 Get:26 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5-26-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [202 kB] build 31-Jul-2019 15:46:52 Get:27 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libheimntlm0-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [15.1 kB] build 31-Jul-2019 15:46:52 Get:28 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgssapi3-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [96.1 kB] build 31-Jul-2019 15:46:52 Get:29 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libsasl2-modules-db amd64 2.1.26.dfsg1-14ubuntu0.1 [14.5 kB] build 31-Jul-2019 15:46:52 Get:30 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libsasl2-2 amd64 2.1.26.dfsg1-14ubuntu0.1 [48.6 kB] build 31-Jul-2019 15:46:52 Get:31 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libldap-2.4-2 amd64 2.4.42+dfsg-2ubuntu3.6 [160 kB] build 31-Jul-2019 15:46:52 Get:32 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d-1ubuntu0.1 [54.4 kB] build 31-Jul-2019 15:46:52 Get:33 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcurl3-gnutls amd64 7.47.0-1ubuntu2.13 [184 kB] build 31-Jul-2019 15:46:52 Get:34 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 curl amd64 7.47.0-1ubuntu2.13 [139 kB] build 31-Jul-2019 15:46:52 Get:35 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-stdlib amd64 2.7.12-1ubuntu0~16.04.4 [1880 kB] build 31-Jul-2019 15:46:52 Get:36 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7 amd64 2.7.12-1ubuntu0~16.04.4 [224 kB] build 31-Jul-2019 15:46:52 debconf: delaying package configuration, since apt-utils is not installed build 31-Jul-2019 15:46:52 Fetched 8433 kB in 1s (5924 kB/s) build 31-Jul-2019 15:46:54 Selecting previously unselected package libpython2.7-minimal:amd64. build 31-Jul-2019 15:46:54 (Reading database ... build 31-Jul-2019 15:46:54 (Reading database ... 5% build 31-Jul-2019 15:46:54 (Reading database ... 10% build 31-Jul-2019 15:46:54 (Reading database ... 15% build 31-Jul-2019 15:46:54 (Reading database ... 20% build 31-Jul-2019 15:46:54 (Reading database ... 25% build 31-Jul-2019 15:46:54 (Reading database ... 30% build 31-Jul-2019 15:46:54 (Reading database ... 35% build 31-Jul-2019 15:46:54 (Reading database ... 40% build 31-Jul-2019 15:46:54 (Reading database ... 45% build 31-Jul-2019 15:46:54 (Reading database ... 50% build 31-Jul-2019 15:46:54 (Reading database ... 55% 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31-Jul-2019 15:47:35 Preparing to unpack .../curl_7.47.0-1ubuntu2.13_amd64.deb ... build 31-Jul-2019 15:47:35 Unpacking curl (7.47.0-1ubuntu2.13) ... build 31-Jul-2019 15:47:35 Selecting previously unselected package libpython2.7-stdlib:amd64. build 31-Jul-2019 15:47:35 Preparing to unpack .../libpython2.7-stdlib_2.7.12-1ubuntu0~16.04.4_amd64.deb ... build 31-Jul-2019 15:47:35 Unpacking libpython2.7-stdlib:amd64 (2.7.12-1ubuntu0~16.04.4) ... build 31-Jul-2019 15:47:37 Selecting previously unselected package python2.7. build 31-Jul-2019 15:47:37 Preparing to unpack .../python2.7_2.7.12-1ubuntu0~16.04.4_amd64.deb ... build 31-Jul-2019 15:47:37 Unpacking python2.7 (2.7.12-1ubuntu0~16.04.4) ... build 31-Jul-2019 15:47:38 Processing triggers for libc-bin (2.23-0ubuntu11) ... build 31-Jul-2019 15:47:38 Setting up libpython2.7-minimal:amd64 (2.7.12-1ubuntu0~16.04.4) ... build 31-Jul-2019 15:47:39 Setting up python2.7-minimal (2.7.12-1ubuntu0~16.04.4) ... build 31-Jul-2019 15:47:39 Linking and byte-compiling packages for runtime python2.7... build 31-Jul-2019 15:47:40 Setting up libexpat1:amd64 (2.1.0-7ubuntu0.16.04.4) ... build 31-Jul-2019 15:47:40 Setting up libffi6:amd64 (3.2.1-4) ... build 31-Jul-2019 15:47:40 Setting up libgmp10:amd64 (2:6.1.0+dfsg-2) ... build 31-Jul-2019 15:47:41 Setting up libnettle6:amd64 (3.2-1ubuntu0.16.04.1) ... build 31-Jul-2019 15:47:41 Setting up libhogweed4:amd64 (3.2-1ubuntu0.16.04.1) ... build 31-Jul-2019 15:47:42 Setting up libidn11:amd64 (1.32-3ubuntu1.2) ... build 31-Jul-2019 15:47:42 Setting up libp11-kit0:amd64 (0.23.2-5~ubuntu16.04.1) ... build 31-Jul-2019 15:47:42 Setting up libtasn1-6:amd64 (4.7-3ubuntu0.16.04.3) ... build 31-Jul-2019 15:47:43 Setting up libgnutls30:amd64 (3.4.10-4ubuntu1.5) ... build 31-Jul-2019 15:47:43 Setting up libsqlite3-0:amd64 (3.11.0-1ubuntu1.2) ... build 31-Jul-2019 15:47:43 Setting up libssl1.0.0:amd64 (1.0.2g-1ubuntu4.15) ... build 31-Jul-2019 15:47:43 debconf: unable to initialize frontend: Dialog build 31-Jul-2019 15:47:43 debconf: (TERM is not set, so the dialog frontend is not usable.) build 31-Jul-2019 15:47:43 debconf: falling back to frontend: Readline build 31-Jul-2019 15:47:43 debconf: unable to initialize frontend: Readline build 31-Jul-2019 15:47:43 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) build 31-Jul-2019 15:47:43 debconf: falling back to frontend: Teletype build 31-Jul-2019 15:47:44 Setting up mime-support (3.59ubuntu1) ... build 31-Jul-2019 15:47:44 Setting up libroken18-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 31-Jul-2019 15:47:45 Setting up libasn1-8-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 31-Jul-2019 15:47:45 Setting up libkrb5support0:amd64 (1.13.2+dfsg-5ubuntu2.1) ... build 31-Jul-2019 15:47:45 Setting up libk5crypto3:amd64 (1.13.2+dfsg-5ubuntu2.1) ... build 31-Jul-2019 15:47:45 Setting up libkeyutils1:amd64 (1.5.9-8ubuntu1) ... build 31-Jul-2019 15:47:45 Setting up libkrb5-3:amd64 (1.13.2+dfsg-5ubuntu2.1) ... build 31-Jul-2019 15:47:46 Setting up libgssapi-krb5-2:amd64 (1.13.2+dfsg-5ubuntu2.1) ... build 31-Jul-2019 15:47:46 Setting up libhcrypto4-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 31-Jul-2019 15:47:46 Setting up libheimbase1-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 31-Jul-2019 15:47:46 Setting up libwind0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 31-Jul-2019 15:47:46 Setting up libhx509-5-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 31-Jul-2019 15:47:47 Setting up libkrb5-26-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 31-Jul-2019 15:47:47 Setting up libheimntlm0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 31-Jul-2019 15:47:48 Setting up libgssapi3-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 31-Jul-2019 15:47:48 Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-14ubuntu0.1) ... build 31-Jul-2019 15:47:48 Setting up libsasl2-2:amd64 (2.1.26.dfsg1-14ubuntu0.1) ... build 31-Jul-2019 15:47:48 Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2ubuntu3.6) ... build 31-Jul-2019 15:47:49 Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d-1ubuntu0.1) ... build 31-Jul-2019 15:47:49 Setting up libcurl3-gnutls:amd64 (7.47.0-1ubuntu2.13) ... build 31-Jul-2019 15:47:49 Setting up curl (7.47.0-1ubuntu2.13) ... build 31-Jul-2019 15:47:49 Setting up libpython2.7-stdlib:amd64 (2.7.12-1ubuntu0~16.04.4) ... build 31-Jul-2019 15:47:50 Setting up python2.7 (2.7.12-1ubuntu0~16.04.4) ... build 31-Jul-2019 15:47:50 Processing triggers for libc-bin (2.23-0ubuntu11) ... build 31-Jul-2019 15:47:52  % Total % Received % Xferd Average Speed  Time Time Time Current build 31-Jul-2019 15:47:52      Dload Upload Total Spent  Left Speed build 31-Jul-2019 15:47:52 build 31-Jul-2019 15:47:52 0 0 0  0   0 0 0  0 --:--:-- --:--:-- --:--:--  0 build 31-Jul-2019 15:47:52 100 1733k 100 1733k 0 0 15.8M 0 --:--:-- --:--:-- --:--:-- 15.9M build 31-Jul-2019 15:47:53 DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support build 31-Jul-2019 15:47:53 Collecting pip build 31-Jul-2019 15:47:53 Downloading https://files.pythonhosted.org/packages/62/ca/94d32a6516ed197a491d17d46595ce58a83cbb2fca280414e57cd86b84dc/pip-19.2.1-py2.py3-none-any.whl (1.4MB) build 31-Jul-2019 15:47:53 Collecting setuptools build 31-Jul-2019 15:47:54 Downloading https://files.pythonhosted.org/packages/ec/51/f45cea425fd5cb0b0380f5b0f048ebc1da5b417e48d304838c02d6288a1e/setuptools-41.0.1-py2.py3-none-any.whl (575kB) build 31-Jul-2019 15:47:54 Collecting wheel build 31-Jul-2019 15:47:54 Downloading https://files.pythonhosted.org/packages/bb/10/44230dd6bf3563b8f227dbf344c908d412ad2ff48066476672f3a72e174e/wheel-0.33.4-py2.py3-none-any.whl build 31-Jul-2019 15:47:54 Installing collected packages: pip, setuptools, wheel build 31-Jul-2019 15:47:55 Successfully installed pip-19.2.1 setuptools-41.0.1 wheel-0.33.4 build 31-Jul-2019 15:47:55 DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support build 31-Jul-2019 15:47:55 Requirement already up-to-date: setuptools in /usr/local/lib/python2.7/dist-packages (41.0.1) build 31-Jul-2019 15:47:58 Removing intermediate container 564d2836afbd build 31-Jul-2019 15:47:58 ---> 98001af36f60 build 31-Jul-2019 15:47:58 Step 5/10 : COPY pyclowder /tmp/pyclowder/pyclowder build 31-Jul-2019 15:47:59 ---> d13cd7576300 build 31-Jul-2019 15:47:59 Step 6/10 : COPY setup.py description.rst /tmp/pyclowder/ build 31-Jul-2019 15:47:59 ---> f92873b31e4b build 31-Jul-2019 15:47:59 Step 7/10 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder build 31-Jul-2019 15:47:59 ---> Running in c6917669fa5c build 31-Jul-2019 15:48:00 DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support build 31-Jul-2019 15:48:01 Processing /tmp/pyclowder build 31-Jul-2019 15:48:01 Collecting enum34==1.1.6 (from pyclowder==2.2.0) build 31-Jul-2019 15:48:01 Downloading https://files.pythonhosted.org/packages/c5/db/e56e6b4bbac7c4a06de1c50de6fe1ef3810018ae11732a50f15f62c7d050/enum34-1.1.6-py2-none-any.whl build 31-Jul-2019 15:48:01 Collecting pika==1.0.0 (from pyclowder==2.2.0) build 31-Jul-2019 15:48:01 Downloading https://files.pythonhosted.org/packages/53/a4/5aff2293e1cdcf5f77447ebdfeaac99b622aef7d1e723cf9a5fe317b077c/pika-1.0.0-py2.py3-none-any.whl (148kB) build 31-Jul-2019 15:48:01 Collecting PyYAML==5.1 (from pyclowder==2.2.0) build 31-Jul-2019 15:48:01 Downloading https://files.pythonhosted.org/packages/9f/2c/9417b5c774792634834e730932745bc09a7d36754ca00acf1ccd1ac2594d/PyYAML-5.1.tar.gz (274kB) build 31-Jul-2019 15:48:01 Collecting requests==2.21.0 (from pyclowder==2.2.0) build 31-Jul-2019 15:48:01 Downloading https://files.pythonhosted.org/packages/7d/e3/20f3d364d6c8e5d2353c72a67778eb189176f08e873c9900e10c0287b84b/requests-2.21.0-py2.py3-none-any.whl (57kB) build 31-Jul-2019 15:48:01 Collecting certifi>=2017.4.17 (from requests==2.21.0->pyclowder==2.2.0) build 31-Jul-2019 15:48:01 Downloading https://files.pythonhosted.org/packages/69/1b/b853c7a9d4f6a6d00749e94eb6f3a041e342a885b87340b79c1ef73e3a78/certifi-2019.6.16-py2.py3-none-any.whl (157kB) build 31-Jul-2019 15:48:01 Collecting chardet<3.1.0,>=3.0.2 (from requests==2.21.0->pyclowder==2.2.0) build 31-Jul-2019 15:48:01 Downloading https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl (133kB) build 31-Jul-2019 15:48:01 Collecting idna<2.9,>=2.5 (from requests==2.21.0->pyclowder==2.2.0) build 31-Jul-2019 15:48:01 Downloading https://files.pythonhosted.org/packages/14/2c/cd551d81dbe15200be1cf41cd03869a46fe7226e7450af7a6545bfc474c9/idna-2.8-py2.py3-none-any.whl (58kB) build 31-Jul-2019 15:48:02 Collecting urllib3<1.25,>=1.21.1 (from requests==2.21.0->pyclowder==2.2.0) build 31-Jul-2019 15:48:02 Downloading https://files.pythonhosted.org/packages/01/11/525b02e4acc0c747de8b6ccdab376331597c569c42ea66ab0a1dbd36eca2/urllib3-1.24.3-py2.py3-none-any.whl (118kB) build 31-Jul-2019 15:48:02 Building wheels for collected packages: pyclowder, PyYAML build 31-Jul-2019 15:48:02 Building wheel for pyclowder (setup.py): started build 31-Jul-2019 15:48:02 Building wheel for pyclowder (setup.py): finished with status 'done' build 31-Jul-2019 15:48:02 Created wheel for pyclowder: filename=pyclowder-2.2.0-cp27-none-any.whl size=31348 sha256=34a56dd3ae0f7eccf57bd9d517cf13591894ff1c4686d33abd8c8741a5d341e9 build 31-Jul-2019 15:48:02 Stored in directory: /tmp/pip-ephem-wheel-cache-KXwlME/wheels/aa/74/36/92a180b9736e758626878aa42c37afe9bc77b688e080a6a1fe build 31-Jul-2019 15:48:02 Building wheel for PyYAML (setup.py): started build 31-Jul-2019 15:48:02 Building wheel for PyYAML (setup.py): finished with status 'done' build 31-Jul-2019 15:48:02 Created wheel for PyYAML: filename=PyYAML-5.1-cp27-cp27mu-linux_x86_64.whl size=44881 sha256=361e94bc88bb60dd5413d3fa2fc51452c7969f58460655a4766093dc737a50aa build 31-Jul-2019 15:48:02 Stored in directory: /root/.cache/pip/wheels/ad/56/bc/1522f864feb2a358ea6f1a92b4798d69ac783a28e80567a18b build 31-Jul-2019 15:48:02 Successfully built pyclowder PyYAML build 31-Jul-2019 15:48:02 Installing collected packages: enum34, pika, PyYAML, certifi, chardet, idna, urllib3, requests, pyclowder build 31-Jul-2019 15:48:03 Successfully installed PyYAML-5.1 certifi-2019.6.16 chardet-3.0.4 enum34-1.1.6 idna-2.8 pika-1.0.0 pyclowder-2.2.0 requests-2.21.0 urllib3-1.24.3 build 31-Jul-2019 15:48:04 Removing intermediate container c6917669fa5c build 31-Jul-2019 15:48:04 ---> 5185a7fe2bdd build 31-Jul-2019 15:48:04 Step 8/10 : WORKDIR /home/clowder build 31-Jul-2019 15:48:04 ---> Running in 84ecead47f59 build 31-Jul-2019 15:48:05 Removing intermediate container 84ecead47f59 build 31-Jul-2019 15:48:05 ---> 470d059f50d7 build 31-Jul-2019 15:48:05 Step 9/10 : COPY notifications.json /home/clowder/ build 31-Jul-2019 15:48:05 ---> 1ded1a9c9bbb build 31-Jul-2019 15:48:05 Step 10/10 : CMD python "./${MAIN_SCRIPT}" build 31-Jul-2019 15:48:05 ---> Running in 093c60ebe0d3 build 31-Jul-2019 15:48:06 Removing intermediate container 093c60ebe0d3 build 31-Jul-2019 15:48:06 ---> f4038a2b3bf6 build 31-Jul-2019 15:48:06 Successfully built f4038a2b3bf6 build 31-Jul-2019 15:48:06 Successfully tagged clowder/pyclowder:latest build 31-Jul-2019 15:48:07 Sending build context to Docker daemon 281.6kB build 31-Jul-2019 15:48:07 build 31-Jul-2019 15:48:07 Step 1/7 : ARG PYCLOWDER_PYTHON="" build 31-Jul-2019 15:48:07 Step 2/7 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest build 31-Jul-2019 15:48:07 ---> f4038a2b3bf6 build 31-Jul-2019 15:48:07 Step 3/7 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 31-Jul-2019 15:48:07 ---> Running in b03a66748a92 build 31-Jul-2019 15:48:07 Removing intermediate container b03a66748a92 build 31-Jul-2019 15:48:07 ---> 575bbe879fc0 build 31-Jul-2019 15:48:07 Step 4/7 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 31-Jul-2019 15:48:08 ---> Running in 39f3137dcb2c build 31-Jul-2019 15:48:09 Removing intermediate container 39f3137dcb2c build 31-Jul-2019 15:48:09 ---> 864e8b5b3676 build 31-Jul-2019 15:48:09 Step 5/7 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 31-Jul-2019 15:48:09 ---> Running in e3b17167f955 build 31-Jul-2019 15:48:10 Removing intermediate container e3b17167f955 build 31-Jul-2019 15:48:10 ---> 016f09de5f4c build 31-Jul-2019 15:48:10 Step 6/7 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 31-Jul-2019 15:48:10 ---> Running in 5ce481350284 build 31-Jul-2019 15:48:11 Removing intermediate container 5ce481350284 build 31-Jul-2019 15:48:11 ---> 4f45485c4405 build 31-Jul-2019 15:48:11 Step 7/7 : ONBUILD ADD . /home/clowder/ build 31-Jul-2019 15:48:12 ---> Running in 5de10436a383 build 31-Jul-2019 15:48:13 Removing intermediate container 5de10436a383 build 31-Jul-2019 15:48:13 ---> 6142467f971f build 31-Jul-2019 15:48:13 Successfully built 6142467f971f build 31-Jul-2019 15:48:13 Successfully tagged clowder/pyclowder:onbuild build 31-Jul-2019 15:48:13 Sending build context to Docker daemon 12.8kB build 31-Jul-2019 15:48:13 build 31-Jul-2019 15:48:13 Step 1/6 : ARG PYCLOWDER_PYTHON="" build 31-Jul-2019 15:48:13 Step 2/6 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:onbuild build 31-Jul-2019 15:48:13 # Executing 5 build triggers build 31-Jul-2019 15:48:14 ---> Running in 3e0f0541ea9f build 31-Jul-2019 15:48:17 Removing intermediate container 3e0f0541ea9f build 31-Jul-2019 15:48:18 ---> Running in 2571cb5671d4 build 31-Jul-2019 15:48:21 Removing intermediate container 2571cb5671d4 build 31-Jul-2019 15:48:22 ---> 27a7bf3f6217 build 31-Jul-2019 15:48:22 Step 3/6 : ENV MAIN_SCRIPT="binary_extractor.py" RABBITMQ_QUEUE="" IMAGE_BINARY="" IMAGE_TYPE="" IMAGE_THUMBNAIL_COMMAND="" IMAGE_PREVIEW_COMMAND="" PREVIEW_BINARY="" PREVIEW_TYPE="" PREVIEW_COMMAND="" build 31-Jul-2019 15:48:23 ---> Running in f24b1e018af3 build 31-Jul-2019 15:48:23 Removing intermediate container f24b1e018af3 build 31-Jul-2019 15:48:23 ---> 7094b91088cb build 31-Jul-2019 15:48:23 Step 4/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 31-Jul-2019 15:48:24 ---> Running in 0c34c1dfab28 build 31-Jul-2019 15:48:24 Removing intermediate container 0c34c1dfab28 build 31-Jul-2019 15:48:24 ---> 87a575ea067a build 31-Jul-2019 15:48:24 Step 5/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 31-Jul-2019 15:48:24 ---> Running in fd97d26cf980 build 31-Jul-2019 15:48:25 Removing intermediate container fd97d26cf980 build 31-Jul-2019 15:48:25 ---> 8ebe0aad36a7 build 31-Jul-2019 15:48:25 Step 6/6 : ONBUILD COPY extractor_info.json /home/clowder/ build 31-Jul-2019 15:48:25 ---> Running in 4f22ca7248a3 build 31-Jul-2019 15:48:26 Removing intermediate container 4f22ca7248a3 build 31-Jul-2019 15:48:26 ---> c60c04e4e5b2 build 31-Jul-2019 15:48:26 Successfully built c60c04e4e5b2 build 31-Jul-2019 15:48:26 Successfully tagged clowder/extractors-binary-preview:onbuild build 31-Jul-2019 15:48:26 Sending build context to Docker daemon 6.656kB build 31-Jul-2019 15:48:26 build 31-Jul-2019 15:48:26 Step 1/11 : ARG PYCLOWDER_PYTHON="" build 31-Jul-2019 15:48:26 Step 2/11 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest build 31-Jul-2019 15:48:26 ---> f4038a2b3bf6 build 31-Jul-2019 15:48:26 Step 3/11 : ENV EXTRACTION_FUNC="" build 31-Jul-2019 15:48:27 ---> Running in 195223d5f79a build 31-Jul-2019 15:48:27 Removing intermediate container 195223d5f79a build 31-Jul-2019 15:48:27 ---> 6b0eb3ffd695 build 31-Jul-2019 15:48:27 Step 4/11 : ENV EXTRACTION_MODULE="" build 31-Jul-2019 15:48:27 ---> Running in 82285daee1a5 build 31-Jul-2019 15:48:27 Removing intermediate container 82285daee1a5 build 31-Jul-2019 15:48:27 ---> e28bc12af063 build 31-Jul-2019 15:48:27 Step 5/11 : COPY simple_extractor.py . build 31-Jul-2019 15:48:29 ---> f27afdc28e02 build 31-Jul-2019 15:48:29 Step 6/11 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 31-Jul-2019 15:48:29 ---> Running in 70a6beb8dbb7 build 31-Jul-2019 15:48:30 Removing intermediate container 70a6beb8dbb7 build 31-Jul-2019 15:48:30 ---> 827ab6de11e7 build 31-Jul-2019 15:48:30 Step 7/11 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 31-Jul-2019 15:48:31 ---> Running in 126b82ed3540 build 31-Jul-2019 15:48:31 Removing intermediate container 126b82ed3540 build 31-Jul-2019 15:48:31 ---> 1cb8a9cc3ff9 build 31-Jul-2019 15:48:31 Step 8/11 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 31-Jul-2019 15:48:31 ---> Running in c209df3ed91e build 31-Jul-2019 15:48:32 Removing intermediate container c209df3ed91e build 31-Jul-2019 15:48:32 ---> 0a187564bd86 build 31-Jul-2019 15:48:32 Step 9/11 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 31-Jul-2019 15:48:32 ---> Running in d0d56fb90df6 build 31-Jul-2019 15:48:32 Removing intermediate container d0d56fb90df6 build 31-Jul-2019 15:48:32 ---> 748d1d913566 build 31-Jul-2019 15:48:32 Step 10/11 : ONBUILD ADD . /home/clowder/ build 31-Jul-2019 15:48:32 ---> Running in 60bdef06aa71 build 31-Jul-2019 15:48:33 Removing intermediate container 60bdef06aa71 build 31-Jul-2019 15:48:33 ---> cc495903d571 build 31-Jul-2019 15:48:33 Step 11/11 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" build 31-Jul-2019 15:48:34 ---> Running in 125d137ccd07 build 31-Jul-2019 15:48:34 Removing intermediate container 125d137ccd07 build 31-Jul-2019 15:48:34 ---> 69ab3c89e038 build 31-Jul-2019 15:48:34 Successfully built 69ab3c89e038 build 31-Jul-2019 15:48:34 Successfully tagged clowder/extractors-simple-extractor:onbuild build 31-Jul-2019 15:48:34 Sending build context to Docker daemon 13.31kB build 31-Jul-2019 15:48:34 build 31-Jul-2019 15:48:34 Step 1/11 : ARG PYCLOWDER_PYTHON="" build 31-Jul-2019 15:48:34 Step 2/11 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest build 31-Jul-2019 15:48:34 ---> f4038a2b3bf6 build 31-Jul-2019 15:48:34 Step 3/11 : ENV R_SCRIPT="" R_FUNCTION="" build 31-Jul-2019 15:48:35 ---> Running in 53993b8c270f build 31-Jul-2019 15:48:35 Removing intermediate container 53993b8c270f build 31-Jul-2019 15:48:35 ---> 8a49c13a8b6f build 31-Jul-2019 15:48:35 Step 4/11 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" build 31-Jul-2019 15:48:35 ---> Running in 4b75a53773f0 build 31-Jul-2019 15:48:37 Executing: /tmp/tmp.VLZHNEsdet/gpg.1.sh --keyserver build 31-Jul-2019 15:48:37 keyserver.ubuntu.com build 31-Jul-2019 15:48:37 --recv build 31-Jul-2019 15:48:37 E084DAB9 build 31-Jul-2019 15:48:37 gpg: requesting key E084DAB9 from hkp server keyserver.ubuntu.com build 31-Jul-2019 15:48:37 gpg: key E084DAB9: public key "Totally Legit Signing Key " imported build 31-Jul-2019 15:48:37 gpg: Total number processed: 1 build 31-Jul-2019 15:48:37 gpg: imported: 1 (RSA: 1) build 31-Jul-2019 15:48:41 W: GPG error: http://cran.rstudio.com/bin/linux/ubuntu xenial/ InRelease: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 51716619E084DAB9 build 31-Jul-2019 15:48:41 W: The repository 'http://cran.rstudio.com/bin/linux/ubuntu xenial/ InRelease' is not signed. build 31-Jul-2019 15:48:42 Reading package lists... build 31-Jul-2019 15:48:42 Building dependency tree... build 31-Jul-2019 15:48:42 Reading state information... build 31-Jul-2019 15:48:42 The following additional packages will be installed: build 31-Jul-2019 15:48:42 autoconf automake autotools-dev binutils bsdmainutils build-essential bzip2 build 31-Jul-2019 15:48:42 ca-certificates cdbs cpp cpp-5 debhelper dh-strip-nondeterminism build 31-Jul-2019 15:48:42 dh-translations dpkg-dev file fontconfig fontconfig-config fonts-dejavu-core build 31-Jul-2019 15:48:42 g++ g++-5 gcc gcc-5 gettext gettext-base gfortran gfortran-5 groff-base build 31-Jul-2019 15:48:42 icu-devtools intltool intltool-debian libarchive-zip-perl libasan2 build 31-Jul-2019 15:48:42 libasprintf0v5 libatomic1 libblas-common libblas-dev libblas3 libbz2-dev build 31-Jul-2019 15:48:42 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcroco3 libcurl3 build 31-Jul-2019 15:48:42 libdatrie1 libdpkg-perl libencode-locale-perl libfile-listing-perl build 31-Jul-2019 15:48:42 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-5-dev build 31-Jul-2019 15:48:42 libgdbm3 libgfortran-5-dev libgfortran3 libglib2.0-0 libgomp1 libgraphite2-3 build 31-Jul-2019 15:48:42 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl build 31-Jul-2019 15:48:42 libhttp-cookies-perl libhttp-date-perl libhttp-message-perl build 31-Jul-2019 15:48:42 libhttp-negotiate-perl libice6 libicu-dev libicu55 libio-html-perl build 31-Jul-2019 15:48:42 libio-socket-ssl-perl libisl15 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 build 31-Jul-2019 15:48:42 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblsan0 build 31-Jul-2019 15:48:42 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic1 build 31-Jul-2019 15:48:42 libmpc3 libmpfr4 libmpx0 libncurses5-dev libnet-http-perl libnet-ssleay-perl build 31-Jul-2019 15:48:42 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils build 31-Jul-2019 15:48:42 libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.22 build 31-Jul-2019 15:48:42 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libpython-stdlib build 31-Jul-2019 15:48:42 libquadmath0 libreadline-dev libreadline6-dev libsigsegv2 libsm6 build 31-Jul-2019 15:48:42 libstdc++-5-dev libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl build 31-Jul-2019 15:48:42 libtinfo-dev libtk8.6 libtsan0 libubsan0 libunistring0 liburi-perl build 31-Jul-2019 15:48:42 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 build 31-Jul-2019 15:48:42 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 build 31-Jul-2019 15:48:42 libxml-parser-perl libxml2 libxmuu1 libxrender1 libxss1 libxt6 build 31-Jul-2019 15:48:42 linux-libc-dev m4 make man-db netbase openssl patch perl perl-modules-5.22 build 31-Jul-2019 15:48:42 pkg-config po-debconf python python-minimal python-pkg-resources build 31-Jul-2019 15:48:42 python-scour python-six tzdata ucf unzip x11-common xauth xdg-utils xz-utils build 31-Jul-2019 15:48:42 zip zlib1g-dev build 31-Jul-2019 15:48:42 Suggested packages: build 31-Jul-2019 15:48:42 autoconf-archive gnu-standards autoconf-doc libtool binutils-doc wamerican build 31-Jul-2019 15:48:42 | wordlist whois vacation bzip2-doc devscripts cpp-doc gcc-5-locales dh-make build 31-Jul-2019 15:48:42 debian-keyring g++-multilib g++-5-multilib gcc-5-doc libstdc++6-5-dbg build 31-Jul-2019 15:48:42 gcc-multilib manpages-dev flex bison gdb gcc-doc gcc-5-multilib libgcc1-dbg build 31-Jul-2019 15:48:42 libgomp1-dbg libitm1-dbg libatomic1-dbg libasan2-dbg liblsan0-dbg build 31-Jul-2019 15:48:42 libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx0-dbg libquadmath0-dbg build 31-Jul-2019 15:48:42 gettext-doc autopoint gfortran-multilib gfortran-doc gfortran-5-multilib build 31-Jul-2019 15:48:42 gfortran-5-doc libgfortran3-dbg groff liblapack-doc-man liblapack-doc build 31-Jul-2019 15:48:42 glibc-doc libdata-dump-perl icu-doc libcrypt-ssleay-perl liblzma-doc build 31-Jul-2019 15:48:42 ncurses-doc readline-doc libstdc++-5-doc tcl8.6 tk8.6 libauthen-ntlm-perl build 31-Jul-2019 15:48:42 make-doc less www-browser ed diffutils-doc perl-doc build 31-Jul-2019 15:48:42 libterm-readline-gnu-perl | libterm-readline-perl-perl libmail-box-perl build 31-Jul-2019 15:48:42 python-doc python-tk python-setuptools python-rsvg python-cairo ess build 31-Jul-2019 15:48:42 r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base build 31-Jul-2019 15:48:42 texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra build 31-Jul-2019 15:48:42 texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo build 31-Jul-2019 15:48:42 gvfs-bin build 31-Jul-2019 15:48:42 Recommended packages: build 31-Jul-2019 15:48:42 fakeroot libalgorithm-merge-perl libasprintf-dev libgettextpo-dev bzip2-doc build 31-Jul-2019 15:48:42 manpages manpages-dev libfile-fcntllock-perl libglib2.0-data build 31-Jul-2019 15:48:42 shared-mime-info xdg-user-dirs libhtml-format-perl libhtml-form-perl build 31-Jul-2019 15:48:42 libhttp-daemon-perl libmailtools-perl xml-core ifupdown rename build 31-Jul-2019 15:48:42 libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl build 31-Jul-2019 15:48:42 libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils build 31-Jul-2019 15:48:42 The following NEW packages will be installed: build 31-Jul-2019 15:48:42 autoconf automake autotools-dev binutils bsdmainutils build-essential bzip2 build 31-Jul-2019 15:48:42 ca-certificates cdbs cpp cpp-5 debhelper dh-strip-nondeterminism build 31-Jul-2019 15:48:42 dh-translations dpkg-dev file fontconfig fontconfig-config fonts-dejavu-core build 31-Jul-2019 15:48:42 g++ g++-5 gcc gcc-5 gettext gettext-base gfortran gfortran-5 groff-base build 31-Jul-2019 15:48:42 icu-devtools intltool intltool-debian libarchive-zip-perl libasan2 build 31-Jul-2019 15:48:42 libasprintf0v5 libatomic1 libblas-common libblas-dev libblas3 libbz2-dev build 31-Jul-2019 15:48:42 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcroco3 libcurl3 build 31-Jul-2019 15:48:42 libdatrie1 libdpkg-perl libencode-locale-perl libfile-listing-perl build 31-Jul-2019 15:48:42 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-5-dev build 31-Jul-2019 15:48:42 libgdbm3 libgfortran-5-dev libgfortran3 libglib2.0-0 libgomp1 libgraphite2-3 build 31-Jul-2019 15:48:42 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl build 31-Jul-2019 15:48:42 libhttp-cookies-perl libhttp-date-perl libhttp-message-perl build 31-Jul-2019 15:48:42 libhttp-negotiate-perl libice6 libicu-dev libicu55 libio-html-perl build 31-Jul-2019 15:48:42 libio-socket-ssl-perl libisl15 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 build 31-Jul-2019 15:48:42 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblsan0 build 31-Jul-2019 15:48:42 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic1 build 31-Jul-2019 15:48:42 libmpc3 libmpfr4 libmpx0 libncurses5-dev libnet-http-perl libnet-ssleay-perl build 31-Jul-2019 15:48:42 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils build 31-Jul-2019 15:48:42 libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.22 build 31-Jul-2019 15:48:42 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libpython-stdlib build 31-Jul-2019 15:48:42 libquadmath0 libreadline-dev libreadline6-dev libsigsegv2 libsm6 build 31-Jul-2019 15:48:42 libstdc++-5-dev libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl build 31-Jul-2019 15:48:42 libtinfo-dev libtk8.6 libtsan0 libubsan0 libunistring0 liburi-perl build 31-Jul-2019 15:48:42 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 build 31-Jul-2019 15:48:42 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 build 31-Jul-2019 15:48:42 libxml-parser-perl libxml2 libxmuu1 libxrender1 libxss1 libxt6 build 31-Jul-2019 15:48:42 linux-libc-dev m4 make man-db netbase openssl patch perl perl-modules-5.22 build 31-Jul-2019 15:48:42 pkg-config po-debconf python python-minimal python-pkg-resources build 31-Jul-2019 15:48:42 python-scour python-six r-base-core r-base-dev tzdata ucf unzip x11-common build 31-Jul-2019 15:48:42 xauth xdg-utils xz-utils zip zlib1g-dev build 31-Jul-2019 15:48:42 0 upgraded, 170 newly installed, 0 to remove and 0 not upgraded. build 31-Jul-2019 15:48:42 Need to get 114 MB of archives. build 31-Jul-2019 15:48:42 After this operation, 409 MB of additional disk space will be used. build 31-Jul-2019 15:48:42 WARNING: The following packages cannot be authenticated! build 31-Jul-2019 15:48:42 r-base-core r-base-dev build 31-Jul-2019 15:48:42 E: There were unauthenticated packages and -y was used without --allow-unauthenticated error 31-Jul-2019 15:48:43 The command '/bin/sh -c echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))"' returned a non-zero code: 100 build 31-Jul-2019 15:48:43  simple 31-Jul-2019 15:48:43 Failing task since return code of [/bin/sh docker.sh] was 100 while expected 0 simple 31-Jul-2019 15:48:43 Finished task 'docker build' with result: Failed simple 31-Jul-2019 15:48:43 Starting task 'test results' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit' simple 31-Jul-2019 15:48:43 Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2100-JOB1... simple 31-Jul-2019 15:48:43 Finished task 'test results' with result: Success simple 31-Jul-2019 15:48:43 Running post build plugin 'Docker Container Cleanup' simple 31-Jul-2019 15:48:43 Running post build plugin 'NCover Results Collector' simple 31-Jul-2019 15:48:43 Running post build plugin 'Clover Results Collector' simple 31-Jul-2019 15:48:43 Running post build plugin 'npm Cache Cleanup' simple 31-Jul-2019 15:48:43 Running post build plugin 'Artifact Copier' simple 31-Jul-2019 15:48:43 Finalising the build... simple 31-Jul-2019 15:48:43 Stopping timer. simple 31-Jul-2019 15:48:43 Build CATS-PYC2100-JOB1-2 completed. simple 31-Jul-2019 15:48:43 Running on server: post build plugin 'NCover Results Collector' simple 31-Jul-2019 15:48:43 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 31-Jul-2019 15:48:43 Running on server: post build plugin 'Clover Delta Calculator' simple 31-Jul-2019 15:48:43 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 31-Jul-2019 15:48:43 All post build plugins have finished simple 31-Jul-2019 15:48:43 Generating build results summary... simple 31-Jul-2019 15:48:43 Saving build results to disk... simple 31-Jul-2019 15:48:43 Logging substituted variables... simple 31-Jul-2019 15:48:43 Indexing build results... simple 31-Jul-2019 15:48:43 Finished building CATS-PYC2100-JOB1-2.