simple 01-Dec-2019 07:34:45 Build Clowder - pyclowder2 - separate-extractor-message-and-type - Default Job #1 (CATS-PYC2104-JOB1-1) started building on agent buildserver-2.os.ncsa.edu simple 01-Dec-2019 07:34:45 Remote agent on host buildserver-2.os.ncsa.edu simple 01-Dec-2019 07:34:45 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2104-JOB1 simple 01-Dec-2019 07:34:45 Executing build Clowder - pyclowder2 - separate-extractor-message-and-type - Default Job #1 (CATS-PYC2104-JOB1-1) simple 01-Dec-2019 07:34:45 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 01-Dec-2019 07:34:45 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2104-JOB1 simple 01-Dec-2019 07:34:45 Updating source code to revision: b80eb33d4fb6d394de173d7c2fdf1d2a294f4e40 simple 01-Dec-2019 07:34:45 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2104-JOB1/.git'. simple 01-Dec-2019 07:34:45 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2104-JOB1/.git/ simple 01-Dec-2019 07:36:07 Fetching 'refs/heads/separate-extractor-message-and-type' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git'. Will try to do a shallow fetch. simple 01-Dec-2019 07:36:07 Warning: Permanently added '[127.0.0.1]:40351' (RSA) to the list of known hosts. simple 01-Dec-2019 07:36:07 From ssh://127.0.0.1:40351/cats/pyclowder2 simple 01-Dec-2019 07:36:07 * [new branch] separate-extractor-message-and-type -> separate-extractor-message-and-type simple 01-Dec-2019 07:36:07 Checking out revision b80eb33d4fb6d394de173d7c2fdf1d2a294f4e40. simple 01-Dec-2019 07:36:07 Switched to branch 'separate-extractor-message-and-type' simple 01-Dec-2019 07:36:07 Updated source code to revision: b80eb33d4fb6d394de173d7c2fdf1d2a294f4e40 simple 01-Dec-2019 07:36:07 Finished task 'Checkout Default Repository' with result: Success simple 01-Dec-2019 07:36:07 Running pre-build action: VCS Version Collector simple 01-Dec-2019 07:36:07 Starting task 'python 2 - pytest' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 01-Dec-2019 07:36:07 Beginning to execute external process for build 'Clowder - pyclowder2 - 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build 01-Dec-2019 07:36:17 Successfully installed PyYAML-5.1 apipkg-1.5 atomicwrites-1.3.0 attrs-19.3.0 certifi-2019.11.28 chardet-3.0.4 configparser-4.0.2 contextlib2-0.6.0.post1 enum34-1.1.6 execnet-1.7.1 funcsigs-1.0.2 idna-2.8 importlib-metadata-1.0.0 more-itertools-5.0.0 pathlib2-2.3.5 pep8-1.7.1 pika-1.0.0 pluggy-0.13.1 py-1.8.0 pytest-4.3.1 pytest-cache-1.0 pytest-pep8-1.0.6 requests-2.21.0 requests-toolbelt-0.9.1 scandir-1.10.0 six-1.13.0 urllib3-1.24.1 wheel-0.33.1 zipp-0.6.0 build 01-Dec-2019 07:36:18 ============================= test session starts ============================== build 01-Dec-2019 07:36:18 platform linux2 -- Python 2.7.12, pytest-4.3.1, py-1.8.0, pluggy-0.13.1 build 01-Dec-2019 07:36:18 rootdir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2104-JOB1, inifile: setup.cfg build 01-Dec-2019 07:36:18 plugins: pep8-1.0.6 build 01-Dec-2019 07:36:18 collected 19 items build 01-Dec-2019 07:36:18 build 01-Dec-2019 07:36:18 setup.py . build 01-Dec-2019 07:36:18 docs/source/conf.py . build 01-Dec-2019 07:36:18 pyclowder/__init__.py . build 01-Dec-2019 07:36:18 pyclowder/client.py . build 01-Dec-2019 07:36:18 pyclowder/collections.py . build 01-Dec-2019 07:36:18 pyclowder/connectors.py F build 01-Dec-2019 07:36:18 pyclowder/datasets.py . build 01-Dec-2019 07:36:18 pyclowder/extractors.py . build 01-Dec-2019 07:36:18 pyclowder/files.py . build 01-Dec-2019 07:36:18 pyclowder/geostreams.py . build 01-Dec-2019 07:36:18 pyclowder/sections.py F build 01-Dec-2019 07:36:18 pyclowder/utils.py . build 01-Dec-2019 07:36:18 sample-extractors/binary-preview/binary_extractor.py . build 01-Dec-2019 07:36:18 sample-extractors/echo/echo.py . build 01-Dec-2019 07:36:18 sample-extractors/simple-extractor/simple_extractor.py . build 01-Dec-2019 07:36:18 sample-extractors/simple-r-extractor/r_extractor.py . build 01-Dec-2019 07:36:18 sample-extractors/wordcount/wordcount.py . build 01-Dec-2019 07:36:18 sample-extractors/wordcount-simple-extractor/wordcount.py . build 01-Dec-2019 07:36:18 tests/clientTest.py . build 01-Dec-2019 07:36:18 build 01-Dec-2019 07:36:18 =================================== FAILURES =================================== build 01-Dec-2019 07:36:18 __________________________________ PEP8-check __________________________________ build 01-Dec-2019 07:36:18 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2104-JOB1/pyclowder/connectors.py:900:37: E221 multiple spaces before operator build 01-Dec-2019 07:36:18 jbody['retry_count'] = msg['retry_count'] build 01-Dec-2019 07:36:18 ^ build 01-Dec-2019 07:36:18 build 01-Dec-2019 07:36:18 __________________________________ PEP8-check __________________________________ build 01-Dec-2019 07:36:18 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2104-JOB1/pyclowder/sections.py:69:29: E128 continuation line under-indented for visual indent build 01-Dec-2019 07:36:18 "Uploading section description.") build 01-Dec-2019 07:36:18 ^ build 01-Dec-2019 07:36:18 build 01-Dec-2019 07:36:18 - generated xml file: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2104-JOB1/test-reports/results-p2.xml - build 01-Dec-2019 07:36:18 ===================== 2 failed, 17 passed in 0.40 seconds ====================== simple 01-Dec-2019 07:36:18 Failing task since return code of [/home/bamboo/bamboo-agent-home/temp/CATS-PYC2104-JOB1-1-ScriptBuildTask-3519368552053977054.sh] was 1 while expected 0 simple 01-Dec-2019 07:36:18 Finished task 'python 2 - pytest' with result: Failed simple 01-Dec-2019 07:36:18 Starting task 'test results' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit' simple 01-Dec-2019 07:36:18 Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2104-JOB1... simple 01-Dec-2019 07:36:18 Failing task since 2 failing test cases were found. simple 01-Dec-2019 07:36:18 Finished task 'test results' with result: Failed simple 01-Dec-2019 07:36:18 Running post build plugin 'Docker Container Cleanup' simple 01-Dec-2019 07:36:18 Running post build plugin 'NCover Results Collector' simple 01-Dec-2019 07:36:18 Running post build plugin 'Clover Results Collector' simple 01-Dec-2019 07:36:18 Running post build plugin 'npm Cache Cleanup' simple 01-Dec-2019 07:36:18 Running post build plugin 'Artifact Copier' simple 01-Dec-2019 07:36:18 Finalising the build... simple 01-Dec-2019 07:36:18 Stopping timer. simple 01-Dec-2019 07:36:18 Build CATS-PYC2104-JOB1-1 completed. simple 01-Dec-2019 07:36:19 Running on server: post build plugin 'NCover Results Collector' simple 01-Dec-2019 07:36:19 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 01-Dec-2019 07:36:19 Running on server: post build plugin 'Clover Delta Calculator' simple 01-Dec-2019 07:36:19 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 01-Dec-2019 07:36:19 All post build plugins have finished simple 01-Dec-2019 07:36:19 Generating build results summary... simple 01-Dec-2019 07:36:19 Saving build results to disk... simple 01-Dec-2019 07:36:19 Logging substituted variables... simple 01-Dec-2019 07:36:19 Indexing build results... simple 01-Dec-2019 07:36:19 Finished building CATS-PYC2104-JOB1-1.