simple 27-Jan-2020 15:07:43 Build Clowder - pyclowder2 - separate-extractor-message-and-type - Default Job #3 (CATS-PYC2104-JOB1-3) started building on agent buildserver-1.os.ncsa.edu simple 27-Jan-2020 15:07:43 Remote agent on host buildserver-1.os.ncsa.edu simple 27-Jan-2020 15:07:43 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2104-JOB1 simple 27-Jan-2020 15:07:43 Executing build Clowder - pyclowder2 - separate-extractor-message-and-type - Default Job #3 (CATS-PYC2104-JOB1-3) simple 27-Jan-2020 15:07:43 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 27-Jan-2020 15:07:43 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2104-JOB1 simple 27-Jan-2020 15:07:43 Updating source code to revision: fa7fb11a2ca3cc674dadbda7a47407d2f268f05c simple 27-Jan-2020 15:07:43 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2104-JOB1/.git'. simple 27-Jan-2020 15:07:43 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2104-JOB1/.git/ simple 27-Jan-2020 15:07:43 Fetching 'refs/heads/separate-extractor-message-and-type' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git'. Will try to do a shallow fetch. simple 27-Jan-2020 15:07:43 Warning: Permanently added '[127.0.0.1]:45354' (RSA) to the list of known hosts. simple 27-Jan-2020 15:07:44 From ssh://127.0.0.1:45354/cats/pyclowder2 simple 27-Jan-2020 15:07:44 * [new branch] separate-extractor-message-and-type -> separate-extractor-message-and-type simple 27-Jan-2020 15:07:44 Checking out revision fa7fb11a2ca3cc674dadbda7a47407d2f268f05c. simple 27-Jan-2020 15:07:44 Switched to branch 'separate-extractor-message-and-type' simple 27-Jan-2020 15:07:44 Updated source code to revision: fa7fb11a2ca3cc674dadbda7a47407d2f268f05c simple 27-Jan-2020 15:07:44 Finished task 'Checkout Default Repository' with result: Success simple 27-Jan-2020 15:07:44 Running pre-build action: VCS Version Collector simple 27-Jan-2020 15:07:44 Starting task 'python 2 - pytest' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 27-Jan-2020 15:07:44 Beginning to execute external process for build 'Clowder - pyclowder2 - separate-extractor-message-and-type - Default Job #3 (CATS-PYC2104-JOB1-3)'\n ... running command line: \n/home/bamboo/bamboo-agent-home/temp/CATS-PYC2104-JOB1-3-ScriptBuildTask-3284672508433878309.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2104-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=separate-extractor-message-and-type\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_planRepository_1_branchDisplayName=separate-extractor-message-and-type\nbamboo_repository_revision_number=fa7fb11a2ca3cc674dadbda7a47407d2f268f05c\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC2104-JOB1-3\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2104-JOB1\nbamboo_planRepository_1_name=pyclowder2\nbamboo_buildKey=CATS-PYC2104-JOB1\nbamboo_capability_system_os=linux\nbamboo_repository_179109890_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_repository_179109890_name=pyclowder2\nbamboo_shortPlanName=pyclowder2\nbamboo_planRepository_name=pyclowder2\nbamboo_buildNumber=3\nbamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt\nbamboo_shortJobName=Default Job\nbamboo_capability_system_builder_command_python3_6=/usr/bin/python3.6\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC2104-JOB1-3\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_agentId=140673027\nbamboo_planName=Clowder - pyclowder2 - separate-extractor-message-and-type\nbamboo_shortPlanKey=PYC2104\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_builder_node_Node_js_v12_14_1=/home/bamboo/node-v12.14.1/bin/node\nbamboo_planRepository_revision=fa7fb11a2ca3cc674dadbda7a47407d2f268f05c\nbamboo_buildTimeStamp=2020-01-27T15:07:37.726-06:00\nbamboo_repository_previous_revision_number=4268d7460829d7c25ea71a53fd5742686f1005e8\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_planRepository_previousRevision=4268d7460829d7c25ea71a53fd5742686f1005e8\nbamboo_repository_git_branch=separate-extractor-message-and-type\nbamboo_buildResultKey=CATS-PYC2104-JOB1-3\nbamboo_repository_branch_name=separate-extractor-message-and-type\nbamboo_repository_179109890_revision_number=fa7fb11a2ca3cc674dadbda7a47407d2f268f05c\nbamboo_buildPlanName=Clowder - pyclowder2 - separate-extractor-message-and-type - Default Job\nbamboo_repository_179109890_git_username=\nbamboo_planRepository_1_revision=fa7fb11a2ca3cc674dadbda7a47407d2f268f05c\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=pyclowder2\nbamboo_repository_179109890_previous_revision_number=4268d7460829d7c25ea71a53fd5742686f1005e8\nbamboo_buildFailed=false\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_repository_179109890_branch_name=separate-extractor-message-and-type\nbamboo_planRepository_branch=separate-extractor-message-and-type\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=4268d7460829d7c25ea71a53fd5742686f1005e8\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_planRepository_branchDisplayName=separate-extractor-message-and-type\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=separate-extractor-message-and-type\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-178978818\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_node_Node_js_v9_3_0=/home/bamboo/node-v9.3.0/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2104-JOB1\nbamboo_planKey=CATS-PYC2104\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_repository_179109890_git_branch=separate-extractor-message-and-type\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_1_branchName=separate-extractor-message-and-type\n build 27-Jan-2020 15:07:44 New python executable in /tmp/virtualenv/pyclowder2-p2/bin/python2 build 27-Jan-2020 15:07:44 Also creating executable in /tmp/virtualenv/pyclowder2-p2/bin/python build 27-Jan-2020 15:07:46 Installing setuptools, pkg_resources, pip, wheel...done. build 27-Jan-2020 15:07:46 Running virtualenv with interpreter /usr/bin/python2 error 27-Jan-2020 15:07:47 DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support build 27-Jan-2020 15:07:47 Collecting enum34==1.1.6 build 27-Jan-2020 15:07:47 Using cached enum34-1.1.6-py2-none-any.whl (12 kB) build 27-Jan-2020 15:07:47 Collecting pika==1.0.0 build 27-Jan-2020 15:07:47 Using cached pika-1.0.0-py2.py3-none-any.whl (148 kB) build 27-Jan-2020 15:07:47 Processing /home/bamboo/.cache/pip/wheels/ad/56/bc/1522f864feb2a358ea6f1a92b4798d69ac783a28e80567a18b/PyYAML-5.1-cp27-cp27mu-linux_x86_64.whl build 27-Jan-2020 15:07:47 Collecting requests==2.21.0 build 27-Jan-2020 15:07:47 Using cached requests-2.21.0-py2.py3-none-any.whl (57 kB) build 27-Jan-2020 15:07:47 Collecting wheel==0.33.1 build 27-Jan-2020 15:07:47 Using cached wheel-0.33.1-py2.py3-none-any.whl (21 kB) build 27-Jan-2020 15:07:47 Collecting urllib3==1.24.1 build 27-Jan-2020 15:07:48 Using cached urllib3-1.24.1-py2.py3-none-any.whl (118 kB) build 27-Jan-2020 15:07:48 Collecting pytest==4.3.1 build 27-Jan-2020 15:07:48 Using cached pytest-4.3.1-py2.py3-none-any.whl (219 kB) build 27-Jan-2020 15:07:48 Processing /home/bamboo/.cache/pip/wheels/68/34/52/2a6e08e030cef8b3671898f34cecb12750cc4b96ebfe66fe67/pytest_pep8-1.0.6-cp27-none-any.whl build 27-Jan-2020 15:07:48 Collecting requests-toolbelt==0.9.1 build 27-Jan-2020 15:07:48 Using cached requests_toolbelt-0.9.1-py2.py3-none-any.whl (54 kB) build 27-Jan-2020 15:07:48 Collecting certifi>=2017.4.17 build 27-Jan-2020 15:07:48 Using cached certifi-2019.11.28-py2.py3-none-any.whl (156 kB) build 27-Jan-2020 15:07:48 Collecting chardet<3.1.0,>=3.0.2 build 27-Jan-2020 15:07:48 Using cached chardet-3.0.4-py2.py3-none-any.whl (133 kB) build 27-Jan-2020 15:07:48 Collecting idna<2.9,>=2.5 build 27-Jan-2020 15:07:48 Using cached idna-2.8-py2.py3-none-any.whl (58 kB) build 27-Jan-2020 15:07:48 Collecting atomicwrites>=1.0 build 27-Jan-2020 15:07:48 Using cached atomicwrites-1.3.0-py2.py3-none-any.whl (5.9 kB) build 27-Jan-2020 15:07:48 Collecting funcsigs; python_version < "3.0" build 27-Jan-2020 15:07:48 Using cached funcsigs-1.0.2-py2.py3-none-any.whl (17 kB) build 27-Jan-2020 15:07:48 Collecting attrs>=17.4.0 build 27-Jan-2020 15:07:48 Using cached attrs-19.3.0-py2.py3-none-any.whl (39 kB) build 27-Jan-2020 15:07:48 Requirement already satisfied: setuptools in /tmp/virtualenv/pyclowder2-p2/lib/python2.7/site-packages (from pytest==4.3.1->-r requirements.txt (line 7)) (45.0.0) error 27-Jan-2020 15:07:48 ERROR: Package 'setuptools' requires a different Python: 2.7.12 not in '>=3.5' error 27-Jan-2020 15:07:48 /home/bamboo/bamboo-agent-home/temp/CATS-PYC2104-JOB1-3-ScriptBuildTask-3284672508433878309.sh: line 10: pytest: command not found simple 27-Jan-2020 15:07:48 Failing task since return code of [/home/bamboo/bamboo-agent-home/temp/CATS-PYC2104-JOB1-3-ScriptBuildTask-3284672508433878309.sh] was 127 while expected 0 simple 27-Jan-2020 15:07:48 Finished task 'python 2 - pytest' with result: Failed simple 27-Jan-2020 15:07:48 Starting task 'test results' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit' simple 27-Jan-2020 15:07:48 Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2104-JOB1... simple 27-Jan-2020 15:07:48 Failing task since test cases were expected but none were found. simple 27-Jan-2020 15:07:48 Finished task 'test results' with result: Failed simple 27-Jan-2020 15:07:48 Running post build plugin 'Docker Container Cleanup' simple 27-Jan-2020 15:07:48 Running post build plugin 'NCover Results Collector' simple 27-Jan-2020 15:07:48 Running post build plugin 'Clover Results Collector' simple 27-Jan-2020 15:07:48 Running post build plugin 'npm Cache Cleanup' simple 27-Jan-2020 15:07:48 Running post build plugin 'Artifact Copier' simple 27-Jan-2020 15:07:48 Finalising the build... simple 27-Jan-2020 15:07:48 Stopping timer. simple 27-Jan-2020 15:07:48 Build CATS-PYC2104-JOB1-3 completed. simple 27-Jan-2020 15:07:48 Running on server: post build plugin 'NCover Results Collector' simple 27-Jan-2020 15:07:48 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 27-Jan-2020 15:07:48 Running on server: post build plugin 'Clover Delta Calculator' simple 27-Jan-2020 15:07:48 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 27-Jan-2020 15:07:48 All post build plugins have finished simple 27-Jan-2020 15:07:48 Generating build results summary... simple 27-Jan-2020 15:07:48 Saving build results to disk... simple 27-Jan-2020 15:07:48 Logging substituted variables... simple 27-Jan-2020 15:07:48 Indexing build results... simple 27-Jan-2020 15:07:48 Finished building CATS-PYC2104-JOB1-3.