simple 11-Feb-2017 13:51:45 Build Clowder - pyclowder2 - bugfix-CATS-729-copy-dataset-extractor-fix - Default Job #1 (CATS-PYC221-JOB1-1) started building on agent buildserver-2.ncsa.illinois.edu simple 11-Feb-2017 13:51:45 Remote Agent simple 11-Feb-2017 13:51:45 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC221-JOB1 simple 11-Feb-2017 13:51:45 Executing build Clowder - pyclowder2 - bugfix-CATS-729-copy-dataset-extractor-fix - Default Job #1 (CATS-PYC221-JOB1-1) simple 11-Feb-2017 13:51:45 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 11-Feb-2017 13:51:45 Updating source code to revision: 772a3afe8f4fcf44b95a12ab5a19afeb3d645887 simple 11-Feb-2017 13:51:45 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC221-JOB1/.git'. simple 11-Feb-2017 13:51:45 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC221-JOB1/.git/ simple 11-Feb-2017 13:51:46 Fetching 'refs/heads/bugfix/CATS-729-copy-dataset-extractor-fix' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git'. Will try to do a shallow fetch. simple 11-Feb-2017 13:51:46 Warning: Permanently added '[127.0.0.1]:50673' (RSA) to the list of known hosts. simple 11-Feb-2017 13:51:46 From ssh://127.0.0.1:50673/cats/pyclowder2 simple 11-Feb-2017 13:51:46 * [new branch] bugfix/CATS-729-copy-dataset-extractor-fix -> bugfix/CATS-729-copy-dataset-extractor-fix simple 11-Feb-2017 13:51:46 Checking out revision 772a3afe8f4fcf44b95a12ab5a19afeb3d645887. simple 11-Feb-2017 13:51:46 Switched to branch 'bugfix/CATS-729-copy-dataset-extractor-fix' simple 11-Feb-2017 13:51:47 Updated source code to revision: 772a3afe8f4fcf44b95a12ab5a19afeb3d645887 simple 11-Feb-2017 13:51:47 Finished task 'Checkout Default Repository' with result: Success simple 11-Feb-2017 13:51:47 Running pre-build action: VCS Version Collector simple 11-Feb-2017 13:51:47 Starting task 'pytest' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 11-Feb-2017 13:51:47 Beginning to execute external process for build 'Clowder - pyclowder2 - bugfix-CATS-729-copy-dataset-extractor-fix - Default Job #1 (CATS-PYC221-JOB1-1)'\n ... running command line: \n/home/bamboo/bamboo-agent-home/temp/CATS-PYC221-JOB1-1-ScriptBuildTask-6114806633348705409.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC221-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=bugfix/CATS-729-copy-dataset-extractor-fix\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_repository_138084370_git_username=\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_repository_revision_number=772a3afe8f4fcf44b95a12ab5a19afeb3d645887\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC221-JOB1-1\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_planRepository_1_name=pyclowder2\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC221-JOB1\nbamboo_buildKey=CATS-PYC221-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=bugfix-CATS-729-copy-dataset-extractor-fix\nbamboo_planRepository_name=pyclowder2\nbamboo_buildNumber=1\nbamboo_capability_system_builder_nodejs_Node_js_v6_9_1=/home/bamboo/node-v6.9.1\nbamboo_capability_system_builder_nodejs_Node_js_v0_10_28=/home/bamboo/node-v0.10.28\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC221-JOB1-1\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_agentId=106758145\nbamboo_planName=Clowder - pyclowder2 - bugfix-CATS-729-copy-dataset-extractor-fix\nbamboo_shortPlanKey=PYC221\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_shortJobKey=JOB1\nbamboo_planRepository_revision=772a3afe8f4fcf44b95a12ab5a19afeb3d645887\nbamboo_buildTimeStamp=2017-02-11T13:51:45.133-06:00\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_buildResultKey=CATS-PYC221-JOB1-1\nbamboo_repository_git_branch=bugfix/CATS-729-copy-dataset-extractor-fix\nbamboo_repository_branch_name=bugfix/CATS-729-copy-dataset-extractor-fix\nbamboo_buildPlanName=Clowder - pyclowder2 - bugfix-CATS-729-copy-dataset-extractor-fix - Default Job\nbamboo_repository_138084370_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_planRepository_1_revision=772a3afe8f4fcf44b95a12ab5a19afeb3d645887\nbamboo_repository_138084370_name=pyclowder2\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=pyclowder2\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_branch=bugfix/CATS-729-copy-dataset-extractor-fix\nbamboo_repository_138084370_branch_name=bugfix/CATS-729-copy-dataset-extractor-fix\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=stash-rep\nbamboo_planRepository_branchName=bugfix/CATS-729-copy-dataset-extractor-fix\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-2\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_planRepository_type=stash-rep\nbamboo_planRepository_1_username=\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_repository_138084370_git_branch=bugfix/CATS-729-copy-dataset-extractor-fix\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC221-JOB1\nbamboo_planKey=CATS-PYC221\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_repository_138084370_revision_number=772a3afe8f4fcf44b95a12ab5a19afeb3d645887\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_1_branchName=bugfix/CATS-729-copy-dataset-extractor-fix\n build 11-Feb-2017 13:51:47 New python executable in /tmp/virtualenv/pyclowder2/bin/python build 11-Feb-2017 13:51:49 Installing setuptools, pip...done. build 11-Feb-2017 13:51:50 Downloading/unpacking enum34==1.1.6 (from -r requirements.txt (line 1)) build 11-Feb-2017 13:51:50 Downloading enum34-1.1.6-py2-none-any.whl build 11-Feb-2017 13:51:50 Downloading/unpacking pika==0.10.0 (from -r requirements.txt (line 2)) build 11-Feb-2017 13:51:50 Downloading/unpacking PyYAML==3.11 (from -r requirements.txt (line 3)) build 11-Feb-2017 13:51:51 Running setup.py (path:/tmp/virtualenv/pyclowder2/build/PyYAML/setup.py) egg_info for package PyYAML build 11-Feb-2017 13:51:51 build 11-Feb-2017 13:51:51 Downloading/unpacking requests==2.10.0 (from -r requirements.txt (line 4)) build 11-Feb-2017 13:51:51 Downloading/unpacking wheel==0.24.0 (from -r requirements.txt (line 5)) build 11-Feb-2017 13:51:51 Downloading/unpacking pytest==3.0.3 (from -r requirements.txt (line 6)) build 11-Feb-2017 13:51:51 Downloading/unpacking pytest-pep8==1.0.6 (from -r requirements.txt (line 7)) build 11-Feb-2017 13:51:52 Downloading pytest-pep8-1.0.6.tar.gz build 11-Feb-2017 13:51:52 Running setup.py (path:/tmp/virtualenv/pyclowder2/build/pytest-pep8/setup.py) egg_info for package pytest-pep8 build 11-Feb-2017 13:51:52 build 11-Feb-2017 13:51:52 warning: no directories found matching 'doc' build 11-Feb-2017 13:51:52 warning: no directories found matching 'test_pep8.py' build 11-Feb-2017 13:51:52 Downloading/unpacking urllib3==1.14 (from -r requirements.txt (line 8)) build 11-Feb-2017 13:51:52 Downloading/unpacking py>=1.4.29 (from pytest==3.0.3->-r requirements.txt (line 6)) build 11-Feb-2017 13:51:52 Downloading/unpacking pytest-cache (from pytest-pep8==1.0.6->-r requirements.txt (line 7)) build 11-Feb-2017 13:51:52 Downloading pytest-cache-1.0.tar.gz build 11-Feb-2017 13:51:52 Running setup.py (path:/tmp/virtualenv/pyclowder2/build/pytest-cache/setup.py) egg_info for package pytest-cache build 11-Feb-2017 13:51:52 build 11-Feb-2017 13:51:52 Downloading/unpacking pep8>=1.3 (from pytest-pep8==1.0.6->-r requirements.txt (line 7)) build 11-Feb-2017 13:51:52 Downloading/unpacking execnet>=1.1.dev1 (from pytest-cache->pytest-pep8==1.0.6->-r requirements.txt (line 7)) build 11-Feb-2017 13:51:52 Downloading/unpacking apipkg>=1.4 (from execnet>=1.1.dev1->pytest-cache->pytest-pep8==1.0.6->-r requirements.txt (line 7)) build 11-Feb-2017 13:51:52 Downloading apipkg-1.4-py2.py3-none-any.whl build 11-Feb-2017 13:51:52 Installing collected packages: enum34, pika, PyYAML, requests, wheel, pytest, pytest-pep8, urllib3, py, pytest-cache, pep8, execnet, apipkg build 11-Feb-2017 13:51:53 Running setup.py install for PyYAML build 11-Feb-2017 13:51:53 checking if libyaml is compilable build 11-Feb-2017 13:51:53 x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/usr/include/python2.7 -c build/temp.linux-x86_64-2.7/check_libyaml.c -o build/temp.linux-x86_64-2.7/check_libyaml.o build 11-Feb-2017 13:51:53 build/temp.linux-x86_64-2.7/check_libyaml.c:2:18: fatal error: yaml.h: No such file or directory build 11-Feb-2017 13:51:53 #include build 11-Feb-2017 13:51:53 ^ build 11-Feb-2017 13:51:53 compilation terminated. build 11-Feb-2017 13:51:53 build 11-Feb-2017 13:51:53 libyaml is not found or a compiler error: forcing --without-libyaml build 11-Feb-2017 13:51:53 (if libyaml is installed correctly, you may need to build 11-Feb-2017 13:51:53 specify the option --include-dirs or uncomment and build 11-Feb-2017 13:51:53 modify the parameter include_dirs in setup.cfg) build 11-Feb-2017 13:51:53 build 11-Feb-2017 13:51:54 Running setup.py install for pytest-pep8 build 11-Feb-2017 13:51:54 build 11-Feb-2017 13:51:54 warning: no directories found matching 'doc' build 11-Feb-2017 13:51:54 warning: no directories found matching 'test_pep8.py' build 11-Feb-2017 13:51:54 Running setup.py install for pytest-cache build 11-Feb-2017 13:51:54 build 11-Feb-2017 13:51:55 Successfully installed enum34 pika PyYAML requests wheel pytest pytest-pep8 urllib3 py pytest-cache pep8 execnet apipkg build 11-Feb-2017 13:51:55 Cleaning up... build 11-Feb-2017 13:51:55 ============================= test session starts ============================== build 11-Feb-2017 13:51:55 platform linux2 -- Python 2.7.6, pytest-3.0.3, py-1.4.32, pluggy-0.4.0 build 11-Feb-2017 13:51:55 rootdir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC221-JOB1, inifile: setup.cfg build 11-Feb-2017 13:51:55 plugins: pep8-1.0.6 build 11-Feb-2017 13:51:55 collected 11 items build 11-Feb-2017 13:51:55 build 11-Feb-2017 13:51:55 setup.py . build 11-Feb-2017 13:51:55 pyclowder/__init__.py . build 11-Feb-2017 13:51:55 pyclowder/collections.py . build 11-Feb-2017 13:51:55 pyclowder/connectors.py . build 11-Feb-2017 13:51:55 pyclowder/datasets.py . build 11-Feb-2017 13:51:55 pyclowder/extractors.py . build 11-Feb-2017 13:51:55 pyclowder/files.py . build 11-Feb-2017 13:51:55 pyclowder/sections.py . build 11-Feb-2017 13:51:55 pyclowder/utils.py . build 11-Feb-2017 13:51:55 sample-extractors/echo/echo.py . build 11-Feb-2017 13:51:55 sample-extractors/wordcount/wordcount.py . build 11-Feb-2017 13:51:55 build 11-Feb-2017 13:51:55 generated xml file: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC221-JOB1/test-reports/results.xml build 11-Feb-2017 13:51:55 ========================== 11 passed in 0.43 seconds =========================== simple 11-Feb-2017 13:51:55 Finished task 'pytest' with result: Success simple 11-Feb-2017 13:51:55 Starting task 'docker build and push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 11-Feb-2017 13:51:55 Beginning to execute external process for build 'Clowder - pyclowder2 - bugfix-CATS-729-copy-dataset-extractor-fix - Default Job #1 (CATS-PYC221-JOB1-1)'\n ... running command line: \n/bin/sh docker.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC221-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=bugfix/CATS-729-copy-dataset-extractor-fix\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_repository_138084370_git_username=\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_repository_revision_number=772a3afe8f4fcf44b95a12ab5a19afeb3d645887\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC221-JOB1-1\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_planRepository_1_name=pyclowder2\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC221-JOB1\nbamboo_buildKey=CATS-PYC221-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=bugfix-CATS-729-copy-dataset-extractor-fix\nbamboo_planRepository_name=pyclowder2\nbamboo_buildNumber=1\nbamboo_capability_system_builder_nodejs_Node_js_v6_9_1=/home/bamboo/node-v6.9.1\nbamboo_capability_system_builder_nodejs_Node_js_v0_10_28=/home/bamboo/node-v0.10.28\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC221-JOB1-1\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_agentId=106758145\nbamboo_planName=Clowder - pyclowder2 - bugfix-CATS-729-copy-dataset-extractor-fix\nbamboo_shortPlanKey=PYC221\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_shortJobKey=JOB1\nbamboo_planRepository_revision=772a3afe8f4fcf44b95a12ab5a19afeb3d645887\nbamboo_buildTimeStamp=2017-02-11T13:51:45.133-06:00\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_3=/home/bamboo/bamboo-agent-home/temp/CATS-PYC221-JOB1-1-ScriptBuildTask-6114806633348705409.sh\nbamboo_buildResultKey=CATS-PYC221-JOB1-1\nbamboo_repository_git_branch=bugfix/CATS-729-copy-dataset-extractor-fix\nbamboo_repository_branch_name=bugfix/CATS-729-copy-dataset-extractor-fix\nbamboo_buildPlanName=Clowder - pyclowder2 - bugfix-CATS-729-copy-dataset-extractor-fix - Default Job\nbamboo_repository_138084370_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_planRepository_1_revision=772a3afe8f4fcf44b95a12ab5a19afeb3d645887\nbamboo_repository_138084370_name=pyclowder2\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=pyclowder2\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_branch=bugfix/CATS-729-copy-dataset-extractor-fix\nbamboo_repository_138084370_branch_name=bugfix/CATS-729-copy-dataset-extractor-fix\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=stash-rep\nbamboo_planRepository_branchName=bugfix/CATS-729-copy-dataset-extractor-fix\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-2\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_planRepository_type=stash-rep\nbamboo_planRepository_1_username=\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_repository_138084370_git_branch=bugfix/CATS-729-copy-dataset-extractor-fix\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC221-JOB1\nbamboo_planKey=CATS-PYC221\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_repository_138084370_revision_number=772a3afe8f4fcf44b95a12ab5a19afeb3d645887\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_1_branchName=bugfix/CATS-729-copy-dataset-extractor-fix\n build 11-Feb-2017 13:51:55 Sending build context to Docker daemon 100.4 kB build 11-Feb-2017 13:51:55 build 11-Feb-2017 13:51:55 Step 1 : FROM ubuntu:16.04 build 11-Feb-2017 13:51:55 ---> f49eec89601e build 11-Feb-2017 13:51:55 Step 2 : MAINTAINER Rob Kooper build 11-Feb-2017 13:51:56 ---> Running in 0a2a54c1302c build 11-Feb-2017 13:51:56 ---> eaf077c2b0ac build 11-Feb-2017 13:51:56 Removing intermediate container 0a2a54c1302c build 11-Feb-2017 13:51:56 Step 3 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends netcat python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* && adduser --system clowder build 11-Feb-2017 13:51:56 ---> Running in ff21bcd80759 build 11-Feb-2017 13:52:04 Reading package lists... build 11-Feb-2017 13:52:04 Building dependency tree... build 11-Feb-2017 13:52:04 Reading state information... build 11-Feb-2017 13:52:05 The following additional packages will be installed: build 11-Feb-2017 13:52:05 ca-certificates libexpat1 libffi6 libpython-stdlib libpython2.7-minimal build 11-Feb-2017 13:52:05 libpython2.7-stdlib libsqlite3-0 libssl1.0.0 mime-support netcat-traditional build 11-Feb-2017 13:52:05 openssl python-minimal python-pip-whl python2.7 python2.7-minimal build 11-Feb-2017 13:52:05 Suggested packages: build 11-Feb-2017 13:52:05 python-doc python-tk python2.7-doc binutils binfmt-support build 11-Feb-2017 13:52:05 Recommended packages: build 11-Feb-2017 13:52:05 file build-essential python-all-dev python-setuptools python-wheel build 11-Feb-2017 13:52:05 The following NEW packages will be installed: build 11-Feb-2017 13:52:05 ca-certificates libexpat1 libffi6 libpython-stdlib libpython2.7-minimal build 11-Feb-2017 13:52:05 libpython2.7-stdlib libsqlite3-0 libssl1.0.0 mime-support netcat build 11-Feb-2017 13:52:05 netcat-traditional openssl python python-minimal python-pip python-pip-whl build 11-Feb-2017 13:52:05 python2.7 python2.7-minimal build 11-Feb-2017 13:52:05 0 upgraded, 18 newly installed, 0 to remove and 7 not upgraded. build 11-Feb-2017 13:52:05 Need to get 7515 kB of archives. build 11-Feb-2017 13:52:05 After this operation, 25.1 MB of additional disk space will be used. build 11-Feb-2017 13:52:05 Get:1 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-minimal amd64 2.7.12-1ubuntu0~16.04.1 [339 kB] build 11-Feb-2017 13:52:05 Get:2 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7-minimal amd64 2.7.12-1ubuntu0~16.04.1 [1295 kB] build 11-Feb-2017 13:52:06 Get:3 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-minimal amd64 2.7.11-1 [28.2 kB] build 11-Feb-2017 13:52:06 Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 mime-support all 3.59ubuntu1 [31.0 kB] build 11-Feb-2017 13:52:06 Get:5 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libexpat1 amd64 2.1.0-7ubuntu0.16.04.2 [71.3 kB] build 11-Feb-2017 13:52:06 Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libffi6 amd64 3.2.1-4 [17.8 kB] build 11-Feb-2017 13:52:06 Get:7 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsqlite3-0 amd64 3.11.0-1ubuntu1 [396 kB] build 11-Feb-2017 13:52:06 Get:8 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libssl1.0.0 amd64 1.0.2g-1ubuntu4.6 [1082 kB] build 11-Feb-2017 13:52:06 Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-stdlib amd64 2.7.12-1ubuntu0~16.04.1 [1884 kB] build 11-Feb-2017 13:52:06 Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7 amd64 2.7.12-1ubuntu0~16.04.1 [224 kB] build 11-Feb-2017 13:52:06 Get:11 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpython-stdlib amd64 2.7.11-1 [7656 B] build 11-Feb-2017 13:52:06 Get:12 http://archive.ubuntu.com/ubuntu xenial/main amd64 python amd64 2.7.11-1 [137 kB] build 11-Feb-2017 13:52:06 Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 openssl amd64 1.0.2g-1ubuntu4.6 [492 kB] build 11-Feb-2017 13:52:06 Get:14 http://archive.ubuntu.com/ubuntu xenial/main amd64 ca-certificates all 20160104ubuntu1 [191 kB] build 11-Feb-2017 13:52:06 Get:15 http://archive.ubuntu.com/ubuntu xenial/universe amd64 netcat-traditional amd64 1.10-41 [60.7 kB] build 11-Feb-2017 13:52:06 Get:16 http://archive.ubuntu.com/ubuntu xenial/universe amd64 netcat all 1.10-41 [3438 B] build 11-Feb-2017 13:52:06 Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 python-pip-whl all 8.1.1-2ubuntu0.4 [1110 kB] build 11-Feb-2017 13:52:06 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 python-pip all 8.1.1-2ubuntu0.4 [144 kB] build 11-Feb-2017 13:52:06 debconf: delaying package configuration, since apt-utils is not installed build 11-Feb-2017 13:52:06 Fetched 7515 kB in 1s (5583 kB/s) build 11-Feb-2017 13:52:07 Selecting previously unselected package libpython2.7-minimal:amd64. build 11-Feb-2017 13:52:07 (Reading database ... build 11-Feb-2017 13:52:07 (Reading database ... 5% build 11-Feb-2017 13:52:07 (Reading database ... 10% build 11-Feb-2017 13:52:07 (Reading database ... 15% build 11-Feb-2017 13:52:07 (Reading database ... 20% build 11-Feb-2017 13:52:07 (Reading database ... 25% build 11-Feb-2017 13:52:07 (Reading database ... 30% build 11-Feb-2017 13:52:07 (Reading database ... 35% build 11-Feb-2017 13:52:07 (Reading database ... 40% build 11-Feb-2017 13:52:07 (Reading database ... 45% build 11-Feb-2017 13:52:07 (Reading database ... 50% build 11-Feb-2017 13:52:07 (Reading database ... 55% build 11-Feb-2017 13:52:07 (Reading database ... 60% build 11-Feb-2017 13:52:07 (Reading database ... 65% build 11-Feb-2017 13:52:07 (Reading database ... 70% build 11-Feb-2017 13:52:07 (Reading database ... 75% build 11-Feb-2017 13:52:07 (Reading database ... 80% build 11-Feb-2017 13:52:07 (Reading database ... 85% build 11-Feb-2017 13:52:07 (Reading database ... 90% build 11-Feb-2017 13:52:07 (Reading database ... 95% build 11-Feb-2017 13:52:07 (Reading database ... 100% build 11-Feb-2017 13:52:07 (Reading database ... 7256 files and directories currently installed.) build 11-Feb-2017 13:52:07 Preparing to unpack .../libpython2.7-minimal_2.7.12-1ubuntu0~16.04.1_amd64.deb ... build 11-Feb-2017 13:52:07 Unpacking libpython2.7-minimal:amd64 (2.7.12-1ubuntu0~16.04.1) ... build 11-Feb-2017 13:52:07 Selecting previously unselected package python2.7-minimal. build 11-Feb-2017 13:52:07 Preparing to unpack .../python2.7-minimal_2.7.12-1ubuntu0~16.04.1_amd64.deb ... build 11-Feb-2017 13:52:07 Unpacking python2.7-minimal (2.7.12-1ubuntu0~16.04.1) ... build 11-Feb-2017 13:52:07 Selecting previously unselected package python-minimal. build 11-Feb-2017 13:52:07 Preparing to unpack .../python-minimal_2.7.11-1_amd64.deb ... build 11-Feb-2017 13:52:07 Unpacking python-minimal (2.7.11-1) ... build 11-Feb-2017 13:52:07 Selecting previously unselected package mime-support. build 11-Feb-2017 13:52:07 Preparing to unpack .../mime-support_3.59ubuntu1_all.deb ... build 11-Feb-2017 13:52:07 Unpacking mime-support (3.59ubuntu1) ... build 11-Feb-2017 13:52:07 Selecting previously unselected package libexpat1:amd64. build 11-Feb-2017 13:52:07 Preparing to unpack .../libexpat1_2.1.0-7ubuntu0.16.04.2_amd64.deb ... build 11-Feb-2017 13:52:07 Unpacking libexpat1:amd64 (2.1.0-7ubuntu0.16.04.2) ... build 11-Feb-2017 13:52:07 Selecting previously unselected package libffi6:amd64. build 11-Feb-2017 13:52:07 Preparing to unpack .../libffi6_3.2.1-4_amd64.deb ... build 11-Feb-2017 13:52:07 Unpacking libffi6:amd64 (3.2.1-4) ... build 11-Feb-2017 13:52:07 Selecting previously unselected package libsqlite3-0:amd64. build 11-Feb-2017 13:52:07 Preparing to unpack .../libsqlite3-0_3.11.0-1ubuntu1_amd64.deb ... build 11-Feb-2017 13:52:07 Unpacking libsqlite3-0:amd64 (3.11.0-1ubuntu1) ... build 11-Feb-2017 13:52:07 Selecting previously unselected package libssl1.0.0:amd64. build 11-Feb-2017 13:52:07 Preparing to unpack .../libssl1.0.0_1.0.2g-1ubuntu4.6_amd64.deb ... build 11-Feb-2017 13:52:07 Unpacking libssl1.0.0:amd64 (1.0.2g-1ubuntu4.6) ... build 11-Feb-2017 13:52:07 Selecting previously unselected package libpython2.7-stdlib:amd64. build 11-Feb-2017 13:52:07 Preparing to unpack .../libpython2.7-stdlib_2.7.12-1ubuntu0~16.04.1_amd64.deb ... build 11-Feb-2017 13:52:07 Unpacking libpython2.7-stdlib:amd64 (2.7.12-1ubuntu0~16.04.1) ... build 11-Feb-2017 13:52:08 Selecting previously unselected package python2.7. build 11-Feb-2017 13:52:08 Preparing to unpack .../python2.7_2.7.12-1ubuntu0~16.04.1_amd64.deb ... build 11-Feb-2017 13:52:08 Unpacking python2.7 (2.7.12-1ubuntu0~16.04.1) ... build 11-Feb-2017 13:52:08 Selecting previously unselected package libpython-stdlib:amd64. build 11-Feb-2017 13:52:08 Preparing to unpack .../libpython-stdlib_2.7.11-1_amd64.deb ... build 11-Feb-2017 13:52:08 Unpacking libpython-stdlib:amd64 (2.7.11-1) ... build 11-Feb-2017 13:52:08 Processing triggers for libc-bin (2.23-0ubuntu5) ... build 11-Feb-2017 13:52:08 Setting up libpython2.7-minimal:amd64 (2.7.12-1ubuntu0~16.04.1) ... build 11-Feb-2017 13:52:08 Setting up python2.7-minimal (2.7.12-1ubuntu0~16.04.1) ... build 11-Feb-2017 13:52:09 Linking and byte-compiling packages for runtime python2.7... build 11-Feb-2017 13:52:09 Setting up python-minimal (2.7.11-1) ... build 11-Feb-2017 13:52:09 Selecting previously unselected package python. build 11-Feb-2017 13:52:09 (Reading database ... build 11-Feb-2017 13:52:09 (Reading database ... 5% build 11-Feb-2017 13:52:09 (Reading database ... 10% build 11-Feb-2017 13:52:09 (Reading database ... 15% build 11-Feb-2017 13:52:09 (Reading database ... 20% build 11-Feb-2017 13:52:09 (Reading database ... 25% build 11-Feb-2017 13:52:09 (Reading database ... 30% build 11-Feb-2017 13:52:09 (Reading database ... 35% build 11-Feb-2017 13:52:09 (Reading database ... 40% build 11-Feb-2017 13:52:09 (Reading database ... 45% build 11-Feb-2017 13:52:09 (Reading database ... 50% build 11-Feb-2017 13:52:09 (Reading database ... 55% build 11-Feb-2017 13:52:09 (Reading database ... 60% build 11-Feb-2017 13:52:09 (Reading database ... 65% build 11-Feb-2017 13:52:09 (Reading database ... 70% build 11-Feb-2017 13:52:09 (Reading database ... 75% build 11-Feb-2017 13:52:09 (Reading database ... 80% build 11-Feb-2017 13:52:09 (Reading database ... 85% build 11-Feb-2017 13:52:09 (Reading database ... 90% build 11-Feb-2017 13:52:09 (Reading database ... 95% build 11-Feb-2017 13:52:09 (Reading database ... 100% build 11-Feb-2017 13:52:09 (Reading database ... 8067 files and directories currently installed.) build 11-Feb-2017 13:52:09 Preparing to unpack .../python_2.7.11-1_amd64.deb ... build 11-Feb-2017 13:52:09 Unpacking python (2.7.11-1) ... build 11-Feb-2017 13:52:09 Selecting previously unselected package openssl. build 11-Feb-2017 13:52:09 Preparing to unpack .../openssl_1.0.2g-1ubuntu4.6_amd64.deb ... build 11-Feb-2017 13:52:09 Unpacking openssl (1.0.2g-1ubuntu4.6) ... build 11-Feb-2017 13:52:09 Selecting previously unselected package ca-certificates. build 11-Feb-2017 13:52:09 Preparing to unpack .../ca-certificates_20160104ubuntu1_all.deb ... build 11-Feb-2017 13:52:09 Unpacking ca-certificates (20160104ubuntu1) ... build 11-Feb-2017 13:52:09 Selecting previously unselected package netcat-traditional. build 11-Feb-2017 13:52:09 Preparing to unpack .../netcat-traditional_1.10-41_amd64.deb ... build 11-Feb-2017 13:52:09 Unpacking netcat-traditional (1.10-41) ... build 11-Feb-2017 13:52:09 Selecting previously unselected package netcat. build 11-Feb-2017 13:52:09 Preparing to unpack .../netcat_1.10-41_all.deb ... build 11-Feb-2017 13:52:09 Unpacking netcat (1.10-41) ... build 11-Feb-2017 13:52:09 Selecting previously unselected package python-pip-whl. build 11-Feb-2017 13:52:09 Preparing to unpack .../python-pip-whl_8.1.1-2ubuntu0.4_all.deb ... build 11-Feb-2017 13:52:09 Unpacking python-pip-whl (8.1.1-2ubuntu0.4) ... build 11-Feb-2017 13:52:09 Selecting previously unselected package python-pip. build 11-Feb-2017 13:52:09 Preparing to unpack .../python-pip_8.1.1-2ubuntu0.4_all.deb ... build 11-Feb-2017 13:52:09 Unpacking python-pip (8.1.1-2ubuntu0.4) ... build 11-Feb-2017 13:52:09 Setting up mime-support (3.59ubuntu1) ... build 11-Feb-2017 13:52:09 Setting up libexpat1:amd64 (2.1.0-7ubuntu0.16.04.2) ... build 11-Feb-2017 13:52:09 Setting up libffi6:amd64 (3.2.1-4) ... build 11-Feb-2017 13:52:09 Setting up libsqlite3-0:amd64 (3.11.0-1ubuntu1) ... build 11-Feb-2017 13:52:09 Setting up libssl1.0.0:amd64 (1.0.2g-1ubuntu4.6) ... build 11-Feb-2017 13:52:09 debconf: unable to initialize frontend: Dialog build 11-Feb-2017 13:52:09 debconf: (TERM is not set, so the dialog frontend is not usable.) build 11-Feb-2017 13:52:09 debconf: falling back to frontend: Readline build 11-Feb-2017 13:52:09 debconf: unable to initialize frontend: Readline build 11-Feb-2017 13:52:09 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) build 11-Feb-2017 13:52:09 debconf: falling back to frontend: Teletype build 11-Feb-2017 13:52:09 Setting up libpython2.7-stdlib:amd64 (2.7.12-1ubuntu0~16.04.1) ... build 11-Feb-2017 13:52:09 Setting up python2.7 (2.7.12-1ubuntu0~16.04.1) ... build 11-Feb-2017 13:52:11 Setting up libpython-stdlib:amd64 (2.7.11-1) ... build 11-Feb-2017 13:52:11 Setting up python (2.7.11-1) ... build 11-Feb-2017 13:52:11 Setting up openssl (1.0.2g-1ubuntu4.6) ... build 11-Feb-2017 13:52:11 Setting up ca-certificates (20160104ubuntu1) ... build 11-Feb-2017 13:52:11 debconf: unable to initialize frontend: Dialog build 11-Feb-2017 13:52:11 debconf: (TERM is not set, so the dialog frontend is not usable.) build 11-Feb-2017 13:52:11 debconf: falling back to frontend: Readline build 11-Feb-2017 13:52:11 debconf: unable to initialize frontend: Readline build 11-Feb-2017 13:52:11 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) build 11-Feb-2017 13:52:11 debconf: falling back to frontend: Teletype build 11-Feb-2017 13:52:12 Setting up netcat-traditional (1.10-41) ... build 11-Feb-2017 13:52:12 update-alternatives: using /bin/nc.traditional to provide /bin/nc (nc) in auto mode build 11-Feb-2017 13:52:12 Setting up netcat (1.10-41) ... build 11-Feb-2017 13:52:12 Setting up python-pip-whl (8.1.1-2ubuntu0.4) ... build 11-Feb-2017 13:52:12 Setting up python-pip (8.1.1-2ubuntu0.4) ... build 11-Feb-2017 13:52:12 Processing triggers for libc-bin (2.23-0ubuntu5) ... build 11-Feb-2017 13:52:12 Processing triggers for ca-certificates (20160104ubuntu1) ... build 11-Feb-2017 13:52:12 Updating certificates in /etc/ssl/certs... build 11-Feb-2017 13:52:16 173 added, 0 removed; done. build 11-Feb-2017 13:52:16 Running hooks in /etc/ca-certificates/update.d... build 11-Feb-2017 13:52:16 done. build 11-Feb-2017 13:52:17 Collecting setuptools build 11-Feb-2017 13:52:17 Downloading setuptools-34.1.1-py2.py3-none-any.whl (389kB) build 11-Feb-2017 13:52:17 Collecting appdirs>=1.4.0 (from setuptools) build 11-Feb-2017 13:52:17 Downloading appdirs-1.4.0-py2.py3-none-any.whl build 11-Feb-2017 13:52:17 Collecting packaging>=16.8 (from setuptools) build 11-Feb-2017 13:52:17 Downloading packaging-16.8-py2.py3-none-any.whl build 11-Feb-2017 13:52:17 Collecting six>=1.6.0 (from setuptools) build 11-Feb-2017 13:52:17 Downloading six-1.10.0-py2.py3-none-any.whl build 11-Feb-2017 13:52:17 Collecting pyparsing (from packaging>=16.8->setuptools) build 11-Feb-2017 13:52:18 Downloading pyparsing-2.1.10-py2.py3-none-any.whl (56kB) build 11-Feb-2017 13:52:18 Installing collected packages: appdirs, pyparsing, six, packaging, setuptools build 11-Feb-2017 13:52:18 Successfully installed appdirs-1.4.0 packaging-16.8 pyparsing-2.1.10 setuptools-34.1.1 six-1.10.0 build 11-Feb-2017 13:52:19 You are using pip version 8.1.1, however version 9.0.1 is available. build 11-Feb-2017 13:52:19 You should consider upgrading via the 'pip install --upgrade pip' command. build 11-Feb-2017 13:52:19 Adding system user `clowder' (UID 105) ... build 11-Feb-2017 13:52:19 Adding new user `clowder' (UID 105) with group `nogroup' ... build 11-Feb-2017 13:52:19 Creating home directory `/home/clowder' ... build 11-Feb-2017 13:52:21 ---> 9b9f2b22358a build 11-Feb-2017 13:52:21 Removing intermediate container ff21bcd80759 build 11-Feb-2017 13:52:21 Step 4 : COPY pyclowder /tmp/pyclowder/pyclowder build 11-Feb-2017 13:52:22 ---> 98c8d21223b1 build 11-Feb-2017 13:52:22 Removing intermediate container 6a3dd7e90993 build 11-Feb-2017 13:52:22 Step 5 : COPY setup.py requirements.txt /tmp/pyclowder/ build 11-Feb-2017 13:52:22 ---> 8fb6c9c405f3 build 11-Feb-2017 13:52:22 Removing intermediate container 7e747ed2c2d5 build 11-Feb-2017 13:52:22 Step 6 : RUN pip install --upgrade -r /tmp/pyclowder/requirements.txt && pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder build 11-Feb-2017 13:52:22 ---> Running in db2487270637 build 11-Feb-2017 13:52:24 Collecting enum34==1.1.6 (from -r /tmp/pyclowder/requirements.txt (line 1)) build 11-Feb-2017 13:52:24 Downloading enum34-1.1.6-py2-none-any.whl build 11-Feb-2017 13:52:24 Collecting pika==0.10.0 (from -r /tmp/pyclowder/requirements.txt (line 2)) build 11-Feb-2017 13:52:24 Downloading pika-0.10.0-py2.py3-none-any.whl (92kB) build 11-Feb-2017 13:52:24 Collecting PyYAML==3.11 (from -r /tmp/pyclowder/requirements.txt (line 3)) build 11-Feb-2017 13:52:24 Downloading PyYAML-3.11.zip (371kB) build 11-Feb-2017 13:52:25 Collecting requests==2.10.0 (from -r /tmp/pyclowder/requirements.txt (line 4)) build 11-Feb-2017 13:52:25 Downloading requests-2.10.0-py2.py3-none-any.whl (506kB) build 11-Feb-2017 13:52:25 Collecting wheel==0.24.0 (from -r /tmp/pyclowder/requirements.txt (line 5)) build 11-Feb-2017 13:52:25 Downloading wheel-0.24.0-py2.py3-none-any.whl (63kB) build 11-Feb-2017 13:52:25 Collecting pytest==3.0.3 (from -r /tmp/pyclowder/requirements.txt (line 6)) build 11-Feb-2017 13:52:25 Downloading pytest-3.0.3-py2.py3-none-any.whl (169kB) build 11-Feb-2017 13:52:25 Collecting pytest-pep8==1.0.6 (from -r /tmp/pyclowder/requirements.txt (line 7)) build 11-Feb-2017 13:52:25 Downloading pytest-pep8-1.0.6.tar.gz build 11-Feb-2017 13:52:26 Collecting urllib3==1.14 (from -r /tmp/pyclowder/requirements.txt (line 8)) build 11-Feb-2017 13:52:26 Downloading urllib3-1.14-py2.py3-none-any.whl (89kB) build 11-Feb-2017 13:52:26 Collecting py>=1.4.29 (from pytest==3.0.3->-r /tmp/pyclowder/requirements.txt (line 6)) build 11-Feb-2017 13:52:26 Downloading py-1.4.32-py2.py3-none-any.whl (82kB) build 11-Feb-2017 13:52:26 Collecting pytest-cache (from pytest-pep8==1.0.6->-r /tmp/pyclowder/requirements.txt (line 7)) build 11-Feb-2017 13:52:26 Downloading pytest-cache-1.0.tar.gz build 11-Feb-2017 13:52:27 Collecting pep8>=1.3 (from pytest-pep8==1.0.6->-r /tmp/pyclowder/requirements.txt (line 7)) build 11-Feb-2017 13:52:27 Downloading pep8-1.7.0-py2.py3-none-any.whl (41kB) build 11-Feb-2017 13:52:27 Collecting execnet>=1.1.dev1 (from pytest-cache->pytest-pep8==1.0.6->-r /tmp/pyclowder/requirements.txt (line 7)) build 11-Feb-2017 13:52:27 Downloading execnet-1.4.1-py2.py3-none-any.whl (40kB) build 11-Feb-2017 13:52:27 Collecting apipkg>=1.4 (from execnet>=1.1.dev1->pytest-cache->pytest-pep8==1.0.6->-r /tmp/pyclowder/requirements.txt (line 7)) build 11-Feb-2017 13:52:27 Downloading apipkg-1.4-py2.py3-none-any.whl build 11-Feb-2017 13:52:27 Building wheels for collected packages: PyYAML, pytest-pep8, pytest-cache build 11-Feb-2017 13:52:27 Running setup.py bdist_wheel for PyYAML: started build 11-Feb-2017 13:52:27 Running setup.py bdist_wheel for PyYAML: finished with status 'error' build 11-Feb-2017 13:52:27  Failed building wheel for PyYAML build 11-Feb-2017 13:52:27  Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-pmxQ_c/PyYAML/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpYbUpKdpip-wheel- --python-tag cp27: build 11-Feb-2017 13:52:27 usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] build 11-Feb-2017 13:52:27 or: -c --help [cmd1 cmd2 ...] build 11-Feb-2017 13:52:27 or: -c --help-commands build 11-Feb-2017 13:52:27 or: -c cmd --help build 11-Feb-2017 13:52:27 build 11-Feb-2017 13:52:27 error: invalid command 'bdist_wheel' build 11-Feb-2017 13:52:27 build 11-Feb-2017 13:52:27 ---------------------------------------- build 11-Feb-2017 13:52:27 Running setup.py clean for PyYAML build 11-Feb-2017 13:52:28 Running setup.py bdist_wheel for pytest-pep8: started build 11-Feb-2017 13:52:28 Running setup.py bdist_wheel for pytest-pep8: finished with status 'error' build 11-Feb-2017 13:52:28 Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-pmxQ_c/pytest-pep8/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpHQe2dspip-wheel- --python-tag cp27: build 11-Feb-2017 13:52:28 usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] build 11-Feb-2017 13:52:28 or: -c --help [cmd1 cmd2 ...] build 11-Feb-2017 13:52:28 or: -c --help-commands build 11-Feb-2017 13:52:28 or: -c cmd --help build 11-Feb-2017 13:52:28 build 11-Feb-2017 13:52:28 error: invalid command 'bdist_wheel' build 11-Feb-2017 13:52:28 build 11-Feb-2017 13:52:28 ---------------------------------------- build 11-Feb-2017 13:52:28  Failed building wheel for pytest-pep8 build 11-Feb-2017 13:52:28  Running setup.py clean for pytest-pep8 build 11-Feb-2017 13:52:29 Running setup.py bdist_wheel for pytest-cache: started build 11-Feb-2017 13:52:29 Running setup.py bdist_wheel for pytest-cache: finished with status 'error' build 11-Feb-2017 13:52:29  Failed building wheel for pytest-cache build 11-Feb-2017 13:52:29  Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-pmxQ_c/pytest-cache/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpQlkSP6pip-wheel- --python-tag cp27: build 11-Feb-2017 13:52:29 usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] build 11-Feb-2017 13:52:29 or: -c --help [cmd1 cmd2 ...] build 11-Feb-2017 13:52:29 or: -c --help-commands build 11-Feb-2017 13:52:29 or: -c cmd --help build 11-Feb-2017 13:52:29 build 11-Feb-2017 13:52:29 error: invalid command 'bdist_wheel' build 11-Feb-2017 13:52:29 build 11-Feb-2017 13:52:29 ---------------------------------------- build 11-Feb-2017 13:52:29 Running setup.py clean for pytest-cache build 11-Feb-2017 13:52:29 Failed to build PyYAML pytest-pep8 pytest-cache build 11-Feb-2017 13:52:29 Installing collected packages: enum34, pika, PyYAML, requests, wheel, py, pytest, apipkg, execnet, pytest-cache, pep8, pytest-pep8, urllib3 build 11-Feb-2017 13:52:30 Running setup.py install for PyYAML: started build 11-Feb-2017 13:52:30 Running setup.py install for PyYAML: finished with status 'done' build 11-Feb-2017 13:52:31 Running setup.py install for pytest-cache: started build 11-Feb-2017 13:52:32 Running setup.py install for pytest-cache: finished with status 'done' build 11-Feb-2017 13:52:32 Running setup.py install for pytest-pep8: started build 11-Feb-2017 13:52:32 Running setup.py install for pytest-pep8: finished with status 'done' build 11-Feb-2017 13:52:33 Successfully installed PyYAML-3.11 apipkg-1.4 enum34-1.1.6 execnet-1.4.1 pep8-1.7.0 pika-0.10.0 py-1.4.32 pytest-3.0.3 pytest-cache-1.0 pytest-pep8-1.0.6 requests-2.10.0 urllib3-1.14 wheel-0.24.0 build 11-Feb-2017 13:52:33 You are using pip version 8.1.1, however version 9.0.1 is available. build 11-Feb-2017 13:52:33 You should consider upgrading via the 'pip install --upgrade pip' command. build 11-Feb-2017 13:52:35 Processing /tmp/pyclowder build 11-Feb-2017 13:52:35 Installing collected packages: pyclowder build 11-Feb-2017 13:52:35 Running setup.py install for pyclowder: started build 11-Feb-2017 13:52:36 Running setup.py install for pyclowder: finished with status 'done' build 11-Feb-2017 13:52:36 Successfully installed pyclowder-2.0.0 build 11-Feb-2017 13:52:36 You are using pip version 8.1.1, however version 9.0.1 is available. build 11-Feb-2017 13:52:36 You should consider upgrading via the 'pip install --upgrade pip' command. build 11-Feb-2017 13:52:37  ---> 9fb5e94c5bbe build 11-Feb-2017 13:52:37 Removing intermediate container db2487270637 build 11-Feb-2017 13:52:37 Successfully built 9fb5e94c5bbe build 11-Feb-2017 13:52:37 Untagged: 23463:latest build 11-Feb-2017 13:52:37 Sending build context to Docker daemon 11.78 kB build 11-Feb-2017 13:52:37 build 11-Feb-2017 13:52:37 Step 1 : FROM clowder/pyclowder:2 build 11-Feb-2017 13:52:37 ---> 9fb5e94c5bbe build 11-Feb-2017 13:52:37 Step 2 : MAINTAINER Rob Kooper build 11-Feb-2017 13:52:37 ---> Running in 4f11d0674162 build 11-Feb-2017 13:52:37 ---> fb94794b6b0e build 11-Feb-2017 13:52:37 Removing intermediate container 4f11d0674162 build 11-Feb-2017 13:52:37 Step 3 : ENV RABBITMQ_URI "" RABBITMQ_EXCHANGE "clowder" RABBITMQ_QUEUE "ncsa.wordcount" REGISTRATION_ENDPOINTS "https://clowder.ncsa.illinois.edu/extractors" MAIN_SCRIPT "wordcount.py" build 11-Feb-2017 13:52:37 ---> Running in bf860196c71a build 11-Feb-2017 13:52:38 ---> 4f28d632076e build 11-Feb-2017 13:52:38 Removing intermediate container bf860196c71a build 11-Feb-2017 13:52:38 Step 4 : USER clowder build 11-Feb-2017 13:52:38 ---> Running in 2b0828fd2481 build 11-Feb-2017 13:52:38 ---> d72ff82ad391 build 11-Feb-2017 13:52:38 Removing intermediate container 2b0828fd2481 build 11-Feb-2017 13:52:38 Step 5 : COPY entrypoint.sh *.py extractor_info.json /home/clowder/ build 11-Feb-2017 13:52:38 ---> 462111cd5954 build 11-Feb-2017 13:52:38 Removing intermediate container 825e2406dc7e build 11-Feb-2017 13:52:38 Step 6 : ENTRYPOINT /home/clowder/entrypoint.sh build 11-Feb-2017 13:52:38 ---> Running in 0e3d5e9dab33 build 11-Feb-2017 13:52:38 ---> 6efe86867ca3 build 11-Feb-2017 13:52:38 Removing intermediate container 0e3d5e9dab33 build 11-Feb-2017 13:52:38 Step 7 : CMD extractor build 11-Feb-2017 13:52:38 ---> Running in 1f11885f2402 build 11-Feb-2017 13:52:38 ---> 78a39f6d877a build 11-Feb-2017 13:52:38 Removing intermediate container 1f11885f2402 build 11-Feb-2017 13:52:38 Successfully built 78a39f6d877a build 11-Feb-2017 13:52:38 Untagged: 23463:latest build 11-Feb-2017 13:52:38 Untagged: clowder/pyclowder:latest build 11-Feb-2017 13:52:38 Untagged: clowder/extractors-wordcount:latest simple 11-Feb-2017 13:52:38 Finished task 'docker build and push' with result: Success simple 11-Feb-2017 13:52:38 Starting task 'test results' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit' simple 11-Feb-2017 13:52:39 Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC221-JOB1... simple 11-Feb-2017 13:52:39 Finished task 'test results' with result: Success simple 11-Feb-2017 13:52:39 Running post build plugin 'Docker Container Cleanup' simple 11-Feb-2017 13:52:39 Running post build plugin 'NCover Results Collector' simple 11-Feb-2017 13:52:39 Running post build plugin 'Clover Results Collector' simple 11-Feb-2017 13:52:39 Running post build plugin 'npm Cache Cleanup' simple 11-Feb-2017 13:52:39 Running post build plugin 'Artifact Copier' simple 11-Feb-2017 13:52:39 Finalising the build... simple 11-Feb-2017 13:52:39 Stopping timer. simple 11-Feb-2017 13:52:39 Build CATS-PYC221-JOB1-1 completed. simple 11-Feb-2017 13:52:39 Running on server: post build plugin 'NCover Results Collector' simple 11-Feb-2017 13:52:39 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 11-Feb-2017 13:52:39 Running on server: post build plugin 'Clover Delta Calculator' simple 11-Feb-2017 13:52:39 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 11-Feb-2017 13:52:39 All post build plugins have finished simple 11-Feb-2017 13:52:39 Generating build results summary... simple 11-Feb-2017 13:52:39 Saving build results to disk... simple 11-Feb-2017 13:52:39 Logging substituted variables... simple 11-Feb-2017 13:52:39 Indexing build results... simple 11-Feb-2017 13:52:39 Finished building CATS-PYC221-JOB1-1.