simple	09-Sep-2017 17:30:06	Build Clowder - pyclowder2 - CATS-784-python3-compatible - Default Job #2 (CATS-PYC248-JOB1-2) started building on agent buildserver-3.os.ncsa.edu
simple	09-Sep-2017 17:30:06	Remote agent on host buildserver-3.os.ncsa.edu
simple	09-Sep-2017 17:30:06	Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC248-JOB1
simple	09-Sep-2017 17:30:06	Executing build Clowder - pyclowder2 - CATS-784-python3-compatible - Default Job #2 (CATS-PYC248-JOB1-2)
simple	09-Sep-2017 17:30:06	Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
simple	09-Sep-2017 17:30:06	Updating source code to revision: 68e7f70bc1fc9865fe32c36cb9a2b9528bbf5065
simple	09-Sep-2017 17:30:38	Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC248-JOB1/.git'.
simple	09-Sep-2017 17:30:38	Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC248-JOB1/.git/
simple	09-Sep-2017 17:30:39	Fetching 'refs/heads/CATS-784-python3-compatible' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git'. Will try to do a shallow fetch.
simple	09-Sep-2017 17:30:39	Warning: Permanently added '[127.0.0.1]:42174' (RSA) to the list of known hosts.
simple	09-Sep-2017 17:30:39	From ssh://127.0.0.1:42174/cats/pyclowder2
simple	09-Sep-2017 17:30:39	 * [new branch]      CATS-784-python3-compatible -> CATS-784-python3-compatible
simple	09-Sep-2017 17:30:39	Checking out revision 68e7f70bc1fc9865fe32c36cb9a2b9528bbf5065.
simple	09-Sep-2017 17:30:39	Switched to branch 'CATS-784-python3-compatible'
simple	09-Sep-2017 17:30:39	Updated source code to revision: 68e7f70bc1fc9865fe32c36cb9a2b9528bbf5065
simple	09-Sep-2017 17:30:39	Finished task 'Checkout Default Repository' with result: Success
simple	09-Sep-2017 17:30:39	Running pre-build action: VCS Version Collector
simple	09-Sep-2017 17:30:39	Starting task 'pytest' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
command	09-Sep-2017 17:30:39	Beginning to execute external process for build 'Clowder - pyclowder2 - CATS-784-python3-compatible - Default Job #2 (CATS-PYC248-JOB1-2)'\n ... running command line: \n/home/bamboo/bamboo-agent-home/temp/CATS-PYC248-JOB1-2-ScriptBuildTask-5528726749916569130.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC248-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=CATS-784-python3-compatible\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_planRepository_1_branchDisplayName=CATS-784-python3-compatible\nbamboo_repository_revision_number=68e7f70bc1fc9865fe32c36cb9a2b9528bbf5065\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC248-JOB1-2\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_planRepository_1_name=pyclowder2\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC248-JOB1\nbamboo_buildKey=CATS-PYC248-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=CATS-784-python3-compatible\nbamboo_repository_148209759_previous_revision_number=ef3ff64803d13a9f87616673965d3087f9acb04b\nbamboo_repository_148209759_git_username=\nbamboo_repository_148209759_revision_number=68e7f70bc1fc9865fe32c36cb9a2b9528bbf5065\nbamboo_planRepository_name=pyclowder2\nbamboo_buildNumber=2\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC248-JOB1-2\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_agentId=143032321\nbamboo_planName=Clowder - pyclowder2 - CATS-784-python3-compatible\nbamboo_shortPlanKey=PYC248\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_planRepository_revision=68e7f70bc1fc9865fe32c36cb9a2b9528bbf5065\nbamboo_repository_previous_revision_number=ef3ff64803d13a9f87616673965d3087f9acb04b\nbamboo_buildTimeStamp=2017-09-09T17:30:06.477-05:00\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_planRepository_previousRevision=ef3ff64803d13a9f87616673965d3087f9acb04b\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_repository_148209759_name=pyclowder2\nbamboo_buildResultKey=CATS-PYC248-JOB1-2\nbamboo_repository_git_branch=CATS-784-python3-compatible\nbamboo_repository_branch_name=CATS-784-python3-compatible\nbamboo_buildPlanName=Clowder - pyclowder2 - CATS-784-python3-compatible - Default Job\nbamboo_repository_148209759_git_branch=CATS-784-python3-compatible\nbamboo_planRepository_1_revision=68e7f70bc1fc9865fe32c36cb9a2b9528bbf5065\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=pyclowder2\nbamboo_repository_148209759_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_buildFailed=false\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_branch=CATS-784-python3-compatible\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_planRepository_1_previousRevision=ef3ff64803d13a9f87616673965d3087f9acb04b\nbamboo_repository_git_username=\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_planRepository_branchDisplayName=CATS-784-python3-compatible\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=CATS-784-python3-compatible\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-148013243\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_planRepository_type=bbserver\nbamboo_planRepository_1_username=\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC248-JOB1\nbamboo_planKey=CATS-PYC248\nbamboo_repository_148209759_branch_name=CATS-784-python3-compatible\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_1_branchName=CATS-784-python3-compatible\n
build	09-Sep-2017 17:30:40	New python executable in /tmp/virtualenv/pyclowder2/bin/python2
build	09-Sep-2017 17:30:40	Also creating executable in /tmp/virtualenv/pyclowder2/bin/python
build	09-Sep-2017 17:30:43	Installing setuptools, pkg_resources, pip, wheel...done.
build	09-Sep-2017 17:30:43	Running virtualenv with interpreter /usr/bin/python2
build	09-Sep-2017 17:30:44	Collecting enum34==1.1.6 (from -r requirements.txt (line 1))
build	09-Sep-2017 17:30:44	  Using cached enum34-1.1.6-py2-none-any.whl
build	09-Sep-2017 17:30:44	Collecting pika==0.10.0 (from -r requirements.txt (line 2))
build	09-Sep-2017 17:30:44	  Using cached pika-0.10.0-py2.py3-none-any.whl
build	09-Sep-2017 17:30:44	Collecting PyYAML==3.11 (from -r requirements.txt (line 3))
build	09-Sep-2017 17:30:44	Collecting requests==2.10.0 (from -r requirements.txt (line 4))
build	09-Sep-2017 17:30:44	  Using cached requests-2.10.0-py2.py3-none-any.whl
build	09-Sep-2017 17:30:44	Collecting wheel==0.24.0 (from -r requirements.txt (line 5))
build	09-Sep-2017 17:30:44	  Using cached wheel-0.24.0-py2.py3-none-any.whl
build	09-Sep-2017 17:30:44	Collecting pytest==3.0.3 (from -r requirements.txt (line 6))
build	09-Sep-2017 17:30:44	  Using cached pytest-3.0.3-py2.py3-none-any.whl
build	09-Sep-2017 17:30:44	Collecting pytest-pep8==1.0.6 (from -r requirements.txt (line 7))
build	09-Sep-2017 17:30:44	Collecting urllib3==1.14 (from -r requirements.txt (line 8))
build	09-Sep-2017 17:30:44	  Using cached urllib3-1.14-py2.py3-none-any.whl
build	09-Sep-2017 17:30:45	Collecting py>=1.4.29 (from pytest==3.0.3->-r requirements.txt (line 6))
build	09-Sep-2017 17:30:45	  Using cached py-1.4.34-py2.py3-none-any.whl
build	09-Sep-2017 17:30:45	Collecting pep8>=1.3 (from pytest-pep8==1.0.6->-r requirements.txt (line 7))
build	09-Sep-2017 17:30:45	  Using cached pep8-1.7.0-py2.py3-none-any.whl
build	09-Sep-2017 17:30:45	Collecting pytest-cache (from pytest-pep8==1.0.6->-r requirements.txt (line 7))
build	09-Sep-2017 17:30:45	Collecting execnet>=1.1.dev1 (from pytest-cache->pytest-pep8==1.0.6->-r requirements.txt (line 7))
build	09-Sep-2017 17:30:45	  Using cached execnet-1.4.1-py2.py3-none-any.whl
build	09-Sep-2017 17:30:45	Collecting apipkg>=1.4 (from execnet>=1.1.dev1->pytest-cache->pytest-pep8==1.0.6->-r requirements.txt (line 7))
build	09-Sep-2017 17:30:45	  Using cached apipkg-1.4-py2.py3-none-any.whl
build	09-Sep-2017 17:30:45	Installing collected packages: enum34, pika, PyYAML, requests, wheel, py, pytest, pep8, apipkg, execnet, pytest-cache, pytest-pep8, urllib3
build	09-Sep-2017 17:30:45	  Found existing installation: wheel 0.30.0a0
build	09-Sep-2017 17:30:45	    Uninstalling wheel-0.30.0a0:
build	09-Sep-2017 17:30:45	      Successfully uninstalled wheel-0.30.0a0
build	09-Sep-2017 17:30:45	Successfully installed PyYAML-3.11 apipkg-1.4 enum34-1.1.6 execnet-1.4.1 pep8-1.7.0 pika-0.10.0 py-1.4.34 pytest-3.0.3 pytest-cache-1.0 pytest-pep8-1.0.6 requests-2.10.0 urllib3-1.14 wheel-0.24.0
build	09-Sep-2017 17:30:46	============================= test session starts ==============================
build	09-Sep-2017 17:30:46	platform linux2 -- Python 2.7.12, pytest-3.0.3, py-1.4.34, pluggy-0.4.0
build	09-Sep-2017 17:30:46	rootdir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC248-JOB1, inifile: setup.cfg
build	09-Sep-2017 17:30:46	plugins: pep8-1.0.6
build	09-Sep-2017 17:30:46	collected 12 items
build	09-Sep-2017 17:30:46	
build	09-Sep-2017 17:30:46	setup.py .
build	09-Sep-2017 17:30:46	pyclowder/__init__.py .
build	09-Sep-2017 17:30:46	pyclowder/collections.py .
build	09-Sep-2017 17:30:46	pyclowder/connectors.py .
build	09-Sep-2017 17:30:46	pyclowder/datasets.py .
build	09-Sep-2017 17:30:46	pyclowder/extractors.py F
build	09-Sep-2017 17:30:46	pyclowder/files.py .
build	09-Sep-2017 17:30:46	pyclowder/geostreams.py .
build	09-Sep-2017 17:30:46	pyclowder/sections.py .
build	09-Sep-2017 17:30:46	pyclowder/utils.py .
build	09-Sep-2017 17:30:46	sample-extractors/echo/echo.py .
build	09-Sep-2017 17:30:46	sample-extractors/wordcount/wordcount.py .
build	09-Sep-2017 17:30:46	
build	09-Sep-2017 17:30:46	 generated xml file: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC248-JOB1/test-reports/results.xml 
build	09-Sep-2017 17:30:46	=================================== FAILURES ===================================
build	09-Sep-2017 17:30:46	__________________________________ PEP8-check __________________________________
build	09-Sep-2017 17:30:46	/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC248-JOB1/pyclowder/extractors.py:87:37: E128 continuation line under-indented for visual indent
build	09-Sep-2017 17:30:46	                                    default=None, action='append',
build	09-Sep-2017 17:30:46	                                    ^
build	09-Sep-2017 17:30:46	/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC248-JOB1/pyclowder/extractors.py:88:37: E128 continuation line under-indented for visual indent
build	09-Sep-2017 17:30:46	                                    help='pickle file that needs to be processed (only needed for HPC)')
build	09-Sep-2017 17:30:46	                                    ^
build	09-Sep-2017 17:30:46	/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC248-JOB1/pyclowder/extractors.py:91:37: E128 continuation line under-indented for visual indent
build	09-Sep-2017 17:30:46	                                    default=None, action='append',
build	09-Sep-2017 17:30:46	                                    ^
build	09-Sep-2017 17:30:46	/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC248-JOB1/pyclowder/extractors.py:92:37: E128 continuation line under-indented for visual indent
build	09-Sep-2017 17:30:46	                                    help='pickle file that needs to be processed (only needed for HPC)')
build	09-Sep-2017 17:30:46	                                    ^
build	09-Sep-2017 17:30:46	/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC248-JOB1/pyclowder/extractors.py:143:44: E272 multiple spaces before keyword
build	09-Sep-2017 17:30:46	                    if not self.args.nobind  and sys.version_info.major == 2:
build	09-Sep-2017 17:30:46	                                           ^
build	09-Sep-2017 17:30:46	
build	09-Sep-2017 17:30:46	===================== 1 failed, 11 passed in 0.24 seconds ======================
simple	09-Sep-2017 17:30:46	Failing task since return code of [/home/bamboo/bamboo-agent-home/temp/CATS-PYC248-JOB1-2-ScriptBuildTask-5528726749916569130.sh] was 1 while expected 0
simple	09-Sep-2017 17:30:46	Finished task 'pytest' with result: Failed
simple	09-Sep-2017 17:30:46	Starting task 'test results' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit'
simple	09-Sep-2017 17:30:46	Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC248-JOB1...
simple	09-Sep-2017 17:30:46	Failing task since 1 failing test cases were found.
simple	09-Sep-2017 17:30:46	Finished task 'test results' with result: Failed
simple	09-Sep-2017 17:30:46	Running post build plugin 'Docker Container Cleanup'
simple	09-Sep-2017 17:30:46	Running post build plugin 'NCover Results Collector'
simple	09-Sep-2017 17:30:46	Running post build plugin 'Clover Results Collector'
simple	09-Sep-2017 17:30:46	Running post build plugin 'npm Cache Cleanup'
simple	09-Sep-2017 17:30:46	Running post build plugin 'Artifact Copier'
simple	09-Sep-2017 17:30:46	Finalising the build...
simple	09-Sep-2017 17:30:46	Stopping timer.
simple	09-Sep-2017 17:30:46	Build CATS-PYC248-JOB1-2 completed.
simple	09-Sep-2017 17:30:46	Running on server: post build plugin 'NCover Results Collector'
simple	09-Sep-2017 17:30:46	Running on server: post build plugin 'Build Hanging Detection Configuration'
simple	09-Sep-2017 17:30:46	Running on server: post build plugin 'Clover Delta Calculator'
simple	09-Sep-2017 17:30:46	Running on server: post build plugin 'Maven Dependencies Postprocessor'
simple	09-Sep-2017 17:30:46	All post build plugins have finished
simple	09-Sep-2017 17:30:46	Generating build results summary...
simple	09-Sep-2017 17:30:46	Saving build results to disk...
simple	09-Sep-2017 17:30:46	Logging substituted variables...
simple	09-Sep-2017 17:30:46	Indexing build results...
simple	09-Sep-2017 17:30:46	Finished building CATS-PYC248-JOB1-2.