simple 18-Jan-2018 08:24:16 Build Clowder - pyclowder2 - extractor-bugfix - Default Job #1 (CATS-PYC259-JOB1-1) started building on agent buildserver-1.os.ncsa.edu simple 18-Jan-2018 08:24:16 Remote agent on host buildserver-1.os.ncsa.edu simple 18-Jan-2018 08:24:16 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC259-JOB1 simple 18-Jan-2018 08:24:16 Executing build Clowder - pyclowder2 - extractor-bugfix - Default Job #1 (CATS-PYC259-JOB1-1) simple 18-Jan-2018 08:24:16 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 18-Jan-2018 08:24:16 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC259-JOB1 simple 18-Jan-2018 08:24:16 Updating source code to revision: 0360b9801b105619a7f1fe26c579c664e6ac6561 simple 18-Jan-2018 08:24:16 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC259-JOB1/.git'. simple 18-Jan-2018 08:24:16 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC259-JOB1/.git/ simple 18-Jan-2018 08:26:22 Fetching 'refs/heads/extractor-bugfix' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git'. Will try to do a shallow fetch. simple 18-Jan-2018 08:26:22 Warning: Permanently added '[127.0.0.1]:46859' (RSA) to the list of known hosts. simple 18-Jan-2018 08:26:22 From ssh://127.0.0.1:46859/cats/pyclowder2 simple 18-Jan-2018 08:26:22 * [new branch] extractor-bugfix -> extractor-bugfix simple 18-Jan-2018 08:26:22 Checking out revision 0360b9801b105619a7f1fe26c579c664e6ac6561. simple 18-Jan-2018 08:26:22 Switched to branch 'extractor-bugfix' simple 18-Jan-2018 08:26:22 Updated source code to revision: 0360b9801b105619a7f1fe26c579c664e6ac6561 simple 18-Jan-2018 08:26:22 Finished task 'Checkout Default Repository' with result: Success simple 18-Jan-2018 08:26:22 Running pre-build action: VCS Version Collector simple 18-Jan-2018 08:26:23 Starting task 'pytest' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 18-Jan-2018 08:26:23 Beginning to execute external process for build 'Clowder - pyclowder2 - extractor-bugfix - Default Job #1 (CATS-PYC259-JOB1-1)'\n ... running command line: \n/home/bamboo/bamboo-agent-home/temp/CATS-PYC259-JOB1-1-ScriptBuildTask-4243091324933931780.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC259-JOB1\n ... using extra environment variables: 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Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC259-JOB1-1\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_agentId=140673027\nbamboo_planName=Clowder - pyclowder2 - extractor-bugfix\nbamboo_shortPlanKey=PYC259\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_shortJobKey=JOB1\nbamboo_planRepository_revision=0360b9801b105619a7f1fe26c579c664e6ac6561\nbamboo_buildTimeStamp=2018-01-18T08:24:15.692-06:00\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_repository_git_branch=extractor-bugfix\nbamboo_buildResultKey=CATS-PYC259-JOB1-1\nbamboo_repository_branch_name=extractor-bugfix\nbamboo_buildPlanName=Clowder - pyclowder2 - extractor-bugfix - Default 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build 18-Jan-2018 08:26:23 New python executable in /tmp/virtualenv/pyclowder2/bin/python2 build 18-Jan-2018 08:26:23 Also creating executable in /tmp/virtualenv/pyclowder2/bin/python build 18-Jan-2018 08:26:25 Installing setuptools, pkg_resources, pip, wheel...done. build 18-Jan-2018 08:26:25 Running virtualenv with interpreter /usr/bin/python2 build 18-Jan-2018 08:26:26 Collecting enum34==1.1.6 (from -r requirements.txt (line 1)) build 18-Jan-2018 08:26:26 Using cached enum34-1.1.6-py2-none-any.whl build 18-Jan-2018 08:26:26 Collecting pika==0.10.0 (from -r requirements.txt (line 2)) build 18-Jan-2018 08:26:26 Using cached pika-0.10.0-py2.py3-none-any.whl build 18-Jan-2018 08:26:26 Collecting PyYAML==3.11 (from -r requirements.txt (line 3)) build 18-Jan-2018 08:26:26 Collecting requests==2.10.0 (from -r requirements.txt (line 4)) build 18-Jan-2018 08:26:26 Using cached requests-2.10.0-py2.py3-none-any.whl build 18-Jan-2018 08:26:26 Collecting wheel==0.24.0 (from -r requirements.txt (line 5)) build 18-Jan-2018 08:26:26 Using cached wheel-0.24.0-py2.py3-none-any.whl build 18-Jan-2018 08:26:26 Collecting pytest==3.0.3 (from -r requirements.txt (line 6)) build 18-Jan-2018 08:26:26 Using cached pytest-3.0.3-py2.py3-none-any.whl build 18-Jan-2018 08:26:27 Collecting pytest-pep8==1.0.6 (from -r requirements.txt (line 7)) build 18-Jan-2018 08:26:27 Collecting urllib3==1.14 (from -r requirements.txt (line 8)) build 18-Jan-2018 08:26:27 Using cached urllib3-1.14-py2.py3-none-any.whl build 18-Jan-2018 08:26:27 Collecting py>=1.4.29 (from pytest==3.0.3->-r requirements.txt (line 6)) build 18-Jan-2018 08:26:27 Using cached py-1.5.2-py2.py3-none-any.whl build 18-Jan-2018 08:26:27 Collecting pep8>=1.3 (from pytest-pep8==1.0.6->-r requirements.txt (line 7)) build 18-Jan-2018 08:26:27 Using cached pep8-1.7.1-py2.py3-none-any.whl build 18-Jan-2018 08:26:27 Collecting pytest-cache (from pytest-pep8==1.0.6->-r requirements.txt (line 7)) build 18-Jan-2018 08:26:27 Collecting execnet>=1.1.dev1 (from pytest-cache->pytest-pep8==1.0.6->-r requirements.txt (line 7)) build 18-Jan-2018 08:26:27 Using cached execnet-1.5.0-py2.py3-none-any.whl build 18-Jan-2018 08:26:27 Collecting apipkg>=1.4 (from execnet>=1.1.dev1->pytest-cache->pytest-pep8==1.0.6->-r requirements.txt (line 7)) build 18-Jan-2018 08:26:27 Using cached apipkg-1.4-py2.py3-none-any.whl build 18-Jan-2018 08:26:27 Installing collected packages: enum34, pika, PyYAML, requests, wheel, py, pytest, pep8, apipkg, execnet, pytest-cache, pytest-pep8, urllib3 build 18-Jan-2018 08:26:27 Found existing installation: wheel 0.30.0 build 18-Jan-2018 08:26:27 Uninstalling wheel-0.30.0: build 18-Jan-2018 08:26:27 Successfully uninstalled wheel-0.30.0 build 18-Jan-2018 08:26:28 Successfully installed PyYAML-3.11 apipkg-1.4 enum34-1.1.6 execnet-1.5.0 pep8-1.7.1 pika-0.10.0 py-1.5.2 pytest-3.0.3 pytest-cache-1.0 pytest-pep8-1.0.6 requests-2.10.0 urllib3-1.14 wheel-0.24.0 build 18-Jan-2018 08:26:28 ============================= test session starts ============================== build 18-Jan-2018 08:26:28 platform linux2 -- Python 2.7.12, pytest-3.0.3, py-1.5.2, pluggy-0.4.0 build 18-Jan-2018 08:26:28 rootdir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC259-JOB1, inifile: setup.cfg build 18-Jan-2018 08:26:28 plugins: pep8-1.0.6 build 18-Jan-2018 08:26:28 collected 15 items build 18-Jan-2018 08:26:28 build 18-Jan-2018 08:26:28 setup.py . build 18-Jan-2018 08:26:28 docs/source/conf.py . build 18-Jan-2018 08:26:28 pyclowder/__init__.py . build 18-Jan-2018 08:26:28 pyclowder/client.py . build 18-Jan-2018 08:26:28 pyclowder/collections.py . build 18-Jan-2018 08:26:28 pyclowder/connectors.py . build 18-Jan-2018 08:26:28 pyclowder/datasets.py . build 18-Jan-2018 08:26:28 pyclowder/extractors.py . build 18-Jan-2018 08:26:28 pyclowder/files.py . build 18-Jan-2018 08:26:28 pyclowder/geostreams.py . build 18-Jan-2018 08:26:28 pyclowder/sections.py . build 18-Jan-2018 08:26:28 pyclowder/utils.py . build 18-Jan-2018 08:26:28 sample-extractors/echo/echo.py . build 18-Jan-2018 08:26:28 sample-extractors/wordcount/wordcount.py . build 18-Jan-2018 08:26:28 tests/clientTest.py . build 18-Jan-2018 08:26:28 build 18-Jan-2018 08:26:28 generated xml file: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC259-JOB1/test-reports/results.xml build 18-Jan-2018 08:26:28 ========================== 15 passed in 0.32 seconds =========================== simple 18-Jan-2018 08:26:28 Finished task 'pytest' with result: Success simple 18-Jan-2018 08:26:28 Starting task 'docker build and push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 18-Jan-2018 08:26:28 Beginning to execute external process for build 'Clowder - pyclowder2 - extractor-bugfix - Default Job #1 (CATS-PYC259-JOB1-1)'\n ... running command line: \n/bin/sh docker.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC259-JOB1\n ... using extra environment variables: 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build 18-Jan-2018 08:26:28 Sending build context to Docker daemon 167.9 kB build 18-Jan-2018 08:26:28 build 18-Jan-2018 08:26:28 Step 1/6 : FROM ubuntu:16.04 build 18-Jan-2018 08:26:29 16.04: Pulling from library/ubuntu build 18-Jan-2018 08:26:29 8f7c85c2269a: Pulling fs layer build 18-Jan-2018 08:26:29 9e72e494a6dd: Pulling fs layer build 18-Jan-2018 08:26:29 3009ec50c887: Pulling fs layer build 18-Jan-2018 08:26:29 9d5ffccbec91: Pulling fs layer build 18-Jan-2018 08:26:29 e872a2642ce1: Pulling fs layer build 18-Jan-2018 08:26:29 9d5ffccbec91: Waiting build 18-Jan-2018 08:26:29 e872a2642ce1: Waiting build 18-Jan-2018 08:26:29 3009ec50c887: Download complete build 18-Jan-2018 08:26:29 9e72e494a6dd: Download complete build 18-Jan-2018 08:26:29 9d5ffccbec91: Download complete build 18-Jan-2018 08:26:29 e872a2642ce1: Verifying Checksum build 18-Jan-2018 08:26:29 e872a2642ce1: Download complete build 18-Jan-2018 08:26:31 8f7c85c2269a: Verifying Checksum build 18-Jan-2018 08:26:31 8f7c85c2269a: Download complete build 18-Jan-2018 08:26:33 8f7c85c2269a: Pull complete build 18-Jan-2018 08:26:34 9e72e494a6dd: Pull complete build 18-Jan-2018 08:26:34 3009ec50c887: Pull complete build 18-Jan-2018 08:26:34 9d5ffccbec91: Pull complete build 18-Jan-2018 08:26:35 e872a2642ce1: Pull complete build 18-Jan-2018 08:26:35 Digest: sha256:d3fdf5b1f8e8a155c17d5786280af1f5a04c10e95145a515279cf17abdf0191f build 18-Jan-2018 08:26:35 Status: Downloaded newer image for ubuntu:16.04 build 18-Jan-2018 08:26:35 ---> 2a4cca5ac898 build 18-Jan-2018 08:26:35 Step 2/6 : MAINTAINER Rob Kooper build 18-Jan-2018 08:26:35 ---> Running in 711b0dd6e192 build 18-Jan-2018 08:26:35 ---> efa6ce59fdd3 build 18-Jan-2018 08:26:35 Removing intermediate container 711b0dd6e192 build 18-Jan-2018 08:26:35 Step 3/6 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends netcat python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* && adduser --system clowder build 18-Jan-2018 08:26:35 ---> Running in 3ac6f3ff18a0 build 18-Jan-2018 08:26:41 Reading package lists... build 18-Jan-2018 08:26:41 Building dependency tree... build 18-Jan-2018 08:26:41 Reading state information... build 18-Jan-2018 08:26:41 The following additional packages will be installed: build 18-Jan-2018 08:26:41 ca-certificates libexpat1 libffi6 libpython-stdlib libpython2.7-minimal build 18-Jan-2018 08:26:41 libpython2.7-stdlib libsqlite3-0 libssl1.0.0 mime-support netcat-traditional build 18-Jan-2018 08:26:41 openssl python-minimal python-pip-whl python2.7 python2.7-minimal build 18-Jan-2018 08:26:41 Suggested packages: build 18-Jan-2018 08:26:41 python-doc python-tk python2.7-doc binutils binfmt-support build 18-Jan-2018 08:26:41 Recommended packages: build 18-Jan-2018 08:26:41 file build-essential python-all-dev python-setuptools python-wheel build 18-Jan-2018 08:26:41 The following NEW packages will be installed: build 18-Jan-2018 08:26:41 ca-certificates libexpat1 libffi6 libpython-stdlib libpython2.7-minimal build 18-Jan-2018 08:26:41 libpython2.7-stdlib libsqlite3-0 libssl1.0.0 mime-support netcat build 18-Jan-2018 08:26:41 netcat-traditional openssl python python-minimal python-pip python-pip-whl build 18-Jan-2018 08:26:41 python2.7 python2.7-minimal build 18-Jan-2018 08:26:41 0 upgraded, 18 newly installed, 0 to remove and 3 not upgraded. build 18-Jan-2018 08:26:41 Need to get 7454 kB of archives. build 18-Jan-2018 08:26:41 After this operation, 25.0 MB of additional disk space will be used. build 18-Jan-2018 08:26:41 Get:1 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-minimal amd64 2.7.12-1ubuntu0~16.04.3 [340 kB] build 18-Jan-2018 08:26:42 Get:2 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7-minimal amd64 2.7.12-1ubuntu0~16.04.3 [1261 kB] build 18-Jan-2018 08:26:42 Get:3 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-minimal amd64 2.7.11-1 [28.2 kB] build 18-Jan-2018 08:26:42 Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 mime-support all 3.59ubuntu1 [31.0 kB] build 18-Jan-2018 08:26:42 Get:5 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libexpat1 amd64 2.1.0-7ubuntu0.16.04.3 [71.2 kB] build 18-Jan-2018 08:26:42 Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libffi6 amd64 3.2.1-4 [17.8 kB] build 18-Jan-2018 08:26:42 Get:7 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsqlite3-0 amd64 3.11.0-1ubuntu1 [396 kB] build 18-Jan-2018 08:26:42 Get:8 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libssl1.0.0 amd64 1.0.2g-1ubuntu4.10 [1083 kB] build 18-Jan-2018 08:26:42 Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-stdlib amd64 2.7.12-1ubuntu0~16.04.3 [1880 kB] build 18-Jan-2018 08:26:42 Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7 amd64 2.7.12-1ubuntu0~16.04.3 [224 kB] build 18-Jan-2018 08:26:42 Get:11 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpython-stdlib amd64 2.7.11-1 [7656 B] build 18-Jan-2018 08:26:42 Get:12 http://archive.ubuntu.com/ubuntu xenial/main amd64 python amd64 2.7.11-1 [137 kB] build 18-Jan-2018 08:26:42 Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 openssl amd64 1.0.2g-1ubuntu4.10 [492 kB] build 18-Jan-2018 08:26:42 Get:14 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 ca-certificates all 20170717~16.04.1 [168 kB] build 18-Jan-2018 08:26:42 Get:15 http://archive.ubuntu.com/ubuntu xenial/universe amd64 netcat-traditional amd64 1.10-41 [60.7 kB] build 18-Jan-2018 08:26:42 Get:16 http://archive.ubuntu.com/ubuntu xenial/universe amd64 netcat all 1.10-41 [3438 B] build 18-Jan-2018 08:26:42 Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 python-pip-whl all 8.1.1-2ubuntu0.4 [1110 kB] build 18-Jan-2018 08:26:42 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 python-pip all 8.1.1-2ubuntu0.4 [144 kB] build 18-Jan-2018 08:26:42 debconf: delaying package configuration, since apt-utils is not installed build 18-Jan-2018 08:26:42 Fetched 7454 kB in 1s (5881 kB/s) build 18-Jan-2018 08:26:42 Selecting previously unselected package libpython2.7-minimal:amd64. build 18-Jan-2018 08:26:42 (Reading database ... build 18-Jan-2018 08:26:42 (Reading database ... 5% build 18-Jan-2018 08:26:42 (Reading database ... 10% build 18-Jan-2018 08:26:42 (Reading database ... 15% build 18-Jan-2018 08:26:42 (Reading database ... 20% build 18-Jan-2018 08:26:42 (Reading database ... 25% build 18-Jan-2018 08:26:42 (Reading database ... 30% build 18-Jan-2018 08:26:42 (Reading database ... 35% build 18-Jan-2018 08:26:42 (Reading database ... 40% build 18-Jan-2018 08:26:42 (Reading database ... 45% build 18-Jan-2018 08:26:42 (Reading database ... 50% build 18-Jan-2018 08:26:42 (Reading database ... 55% build 18-Jan-2018 08:26:42 (Reading database ... 60% build 18-Jan-2018 08:26:42 (Reading database ... 65% build 18-Jan-2018 08:26:42 (Reading database ... 70% build 18-Jan-2018 08:26:42 (Reading database ... 75% build 18-Jan-2018 08:26:42 (Reading database ... 80% build 18-Jan-2018 08:26:42 (Reading database ... 85% build 18-Jan-2018 08:26:42 (Reading database ... 90% build 18-Jan-2018 08:26:42 (Reading database ... 95% build 18-Jan-2018 08:26:42 (Reading database ... 100% build 18-Jan-2018 08:26:42 (Reading database ... 4768 files and directories currently installed.) build 18-Jan-2018 08:26:42 Preparing to unpack .../libpython2.7-minimal_2.7.12-1ubuntu0~16.04.3_amd64.deb ... build 18-Jan-2018 08:26:43 Unpacking libpython2.7-minimal:amd64 (2.7.12-1ubuntu0~16.04.3) ... build 18-Jan-2018 08:26:43 Selecting previously unselected package python2.7-minimal. build 18-Jan-2018 08:26:43 Preparing to unpack .../python2.7-minimal_2.7.12-1ubuntu0~16.04.3_amd64.deb ... build 18-Jan-2018 08:26:43 Unpacking python2.7-minimal (2.7.12-1ubuntu0~16.04.3) ... build 18-Jan-2018 08:26:44 Selecting previously unselected package python-minimal. build 18-Jan-2018 08:26:44 Preparing to unpack .../python-minimal_2.7.11-1_amd64.deb ... build 18-Jan-2018 08:26:44 Unpacking python-minimal (2.7.11-1) ... build 18-Jan-2018 08:26:44 Selecting previously unselected package mime-support. build 18-Jan-2018 08:26:44 Preparing to unpack .../mime-support_3.59ubuntu1_all.deb ... build 18-Jan-2018 08:26:44 Unpacking mime-support (3.59ubuntu1) ... build 18-Jan-2018 08:26:45 Selecting previously unselected package libexpat1:amd64. build 18-Jan-2018 08:26:45 Preparing to unpack .../libexpat1_2.1.0-7ubuntu0.16.04.3_amd64.deb ... build 18-Jan-2018 08:26:45 Unpacking libexpat1:amd64 (2.1.0-7ubuntu0.16.04.3) ... build 18-Jan-2018 08:26:45 Selecting previously unselected package libffi6:amd64. build 18-Jan-2018 08:26:45 Preparing to unpack .../libffi6_3.2.1-4_amd64.deb ... build 18-Jan-2018 08:26:45 Unpacking libffi6:amd64 (3.2.1-4) ... build 18-Jan-2018 08:26:46 Selecting previously unselected package libsqlite3-0:amd64. build 18-Jan-2018 08:26:46 Preparing to unpack .../libsqlite3-0_3.11.0-1ubuntu1_amd64.deb ... build 18-Jan-2018 08:26:46 Unpacking libsqlite3-0:amd64 (3.11.0-1ubuntu1) ... build 18-Jan-2018 08:26:46 Selecting previously unselected package libssl1.0.0:amd64. build 18-Jan-2018 08:26:46 Preparing to unpack .../libssl1.0.0_1.0.2g-1ubuntu4.10_amd64.deb ... build 18-Jan-2018 08:26:46 Unpacking libssl1.0.0:amd64 (1.0.2g-1ubuntu4.10) ... build 18-Jan-2018 08:26:47 Selecting previously unselected package libpython2.7-stdlib:amd64. build 18-Jan-2018 08:26:47 Preparing to unpack .../libpython2.7-stdlib_2.7.12-1ubuntu0~16.04.3_amd64.deb ... build 18-Jan-2018 08:26:47 Unpacking libpython2.7-stdlib:amd64 (2.7.12-1ubuntu0~16.04.3) ... build 18-Jan-2018 08:26:47 Selecting previously unselected package python2.7. build 18-Jan-2018 08:26:47 Preparing to unpack .../python2.7_2.7.12-1ubuntu0~16.04.3_amd64.deb ... build 18-Jan-2018 08:26:47 Unpacking python2.7 (2.7.12-1ubuntu0~16.04.3) ... build 18-Jan-2018 08:26:48 Selecting previously unselected package libpython-stdlib:amd64. build 18-Jan-2018 08:26:48 Preparing to unpack .../libpython-stdlib_2.7.11-1_amd64.deb ... build 18-Jan-2018 08:26:48 Unpacking libpython-stdlib:amd64 (2.7.11-1) ... build 18-Jan-2018 08:26:48 Processing triggers for libc-bin (2.23-0ubuntu9) ... build 18-Jan-2018 08:26:48 Setting up libpython2.7-minimal:amd64 (2.7.12-1ubuntu0~16.04.3) ... build 18-Jan-2018 08:26:49 Setting up python2.7-minimal (2.7.12-1ubuntu0~16.04.3) ... build 18-Jan-2018 08:26:49 Linking and byte-compiling packages for runtime python2.7... build 18-Jan-2018 08:26:49 Setting up python-minimal (2.7.11-1) ... build 18-Jan-2018 08:26:50 Selecting previously unselected package python. build 18-Jan-2018 08:26:50 (Reading database ... build 18-Jan-2018 08:26:50 (Reading database ... 5% build 18-Jan-2018 08:26:50 (Reading database ... 10% build 18-Jan-2018 08:26:50 (Reading database ... 15% build 18-Jan-2018 08:26:50 (Reading database ... 20% build 18-Jan-2018 08:26:50 (Reading database ... 25% build 18-Jan-2018 08:26:50 (Reading database ... 30% build 18-Jan-2018 08:26:50 (Reading database ... 35% build 18-Jan-2018 08:26:50 (Reading database ... 40% build 18-Jan-2018 08:26:50 (Reading database ... 45% build 18-Jan-2018 08:26:50 (Reading database ... 50% build 18-Jan-2018 08:26:50 (Reading database ... 55% build 18-Jan-2018 08:26:50 (Reading database ... 60% build 18-Jan-2018 08:26:50 (Reading database ... 65% build 18-Jan-2018 08:26:50 (Reading database ... 70% build 18-Jan-2018 08:26:50 (Reading database ... 75% build 18-Jan-2018 08:26:50 (Reading database ... 80% build 18-Jan-2018 08:26:50 (Reading database ... 85% build 18-Jan-2018 08:26:50 (Reading database ... 90% build 18-Jan-2018 08:26:50 (Reading database ... 95% build 18-Jan-2018 08:26:50 (Reading database ... 100% build 18-Jan-2018 08:26:50 (Reading database ... 5579 files and directories currently installed.) build 18-Jan-2018 08:26:50 Preparing to unpack .../python_2.7.11-1_amd64.deb ... build 18-Jan-2018 08:26:50 Unpacking python (2.7.11-1) ... build 18-Jan-2018 08:26:50 Selecting previously unselected package openssl. build 18-Jan-2018 08:26:50 Preparing to unpack .../openssl_1.0.2g-1ubuntu4.10_amd64.deb ... build 18-Jan-2018 08:26:50 Unpacking openssl (1.0.2g-1ubuntu4.10) ... build 18-Jan-2018 08:26:51 Selecting previously unselected package ca-certificates. build 18-Jan-2018 08:26:51 Preparing to unpack .../ca-certificates_20170717~16.04.1_all.deb ... build 18-Jan-2018 08:26:51 Unpacking ca-certificates (20170717~16.04.1) ... build 18-Jan-2018 08:26:51 Selecting previously unselected package netcat-traditional. build 18-Jan-2018 08:26:51 Preparing to unpack .../netcat-traditional_1.10-41_amd64.deb ... build 18-Jan-2018 08:26:51 Unpacking netcat-traditional (1.10-41) ... build 18-Jan-2018 08:26:52 Selecting previously unselected package netcat. build 18-Jan-2018 08:26:52 Preparing to unpack .../netcat_1.10-41_all.deb ... build 18-Jan-2018 08:26:52 Unpacking netcat (1.10-41) ... build 18-Jan-2018 08:26:52 Selecting previously unselected package python-pip-whl. build 18-Jan-2018 08:26:52 Preparing to unpack .../python-pip-whl_8.1.1-2ubuntu0.4_all.deb ... build 18-Jan-2018 08:26:52 Unpacking python-pip-whl (8.1.1-2ubuntu0.4) ... build 18-Jan-2018 08:26:52 Selecting previously unselected package python-pip. build 18-Jan-2018 08:26:52 Preparing to unpack .../python-pip_8.1.1-2ubuntu0.4_all.deb ... build 18-Jan-2018 08:26:52 Unpacking python-pip (8.1.1-2ubuntu0.4) ... build 18-Jan-2018 08:26:53 Setting up mime-support (3.59ubuntu1) ... build 18-Jan-2018 08:26:53 Setting up libexpat1:amd64 (2.1.0-7ubuntu0.16.04.3) ... build 18-Jan-2018 08:26:53 Setting up libffi6:amd64 (3.2.1-4) ... build 18-Jan-2018 08:26:54 Setting up libsqlite3-0:amd64 (3.11.0-1ubuntu1) ... build 18-Jan-2018 08:26:54 Setting up libssl1.0.0:amd64 (1.0.2g-1ubuntu4.10) ... build 18-Jan-2018 08:26:54 debconf: unable to initialize frontend: Dialog build 18-Jan-2018 08:26:54 debconf: (TERM is not set, so the dialog frontend is not usable.) build 18-Jan-2018 08:26:54 debconf: falling back to frontend: Readline build 18-Jan-2018 08:26:54 debconf: unable to initialize frontend: Readline build 18-Jan-2018 08:26:54 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) build 18-Jan-2018 08:26:54 debconf: falling back to frontend: Teletype build 18-Jan-2018 08:26:54 Setting up libpython2.7-stdlib:amd64 (2.7.12-1ubuntu0~16.04.3) ... build 18-Jan-2018 08:26:54 Setting up python2.7 (2.7.12-1ubuntu0~16.04.3) ... build 18-Jan-2018 08:26:55 Setting up libpython-stdlib:amd64 (2.7.11-1) ... build 18-Jan-2018 08:26:55 Setting up python (2.7.11-1) ... build 18-Jan-2018 08:26:56 Setting up openssl (1.0.2g-1ubuntu4.10) ... build 18-Jan-2018 08:26:56 Setting up ca-certificates (20170717~16.04.1) ... build 18-Jan-2018 08:26:57 debconf: unable to initialize frontend: Dialog build 18-Jan-2018 08:26:57 debconf: (TERM is not set, so the dialog frontend is not usable.) build 18-Jan-2018 08:26:57 debconf: falling back to frontend: Readline build 18-Jan-2018 08:26:57 debconf: unable to initialize frontend: Readline build 18-Jan-2018 08:26:57 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) build 18-Jan-2018 08:26:57 debconf: falling back to frontend: Teletype build 18-Jan-2018 08:26:57 Setting up netcat-traditional (1.10-41) ... build 18-Jan-2018 08:26:57 update-alternatives: using /bin/nc.traditional to provide /bin/nc (nc) in auto mode build 18-Jan-2018 08:26:57 Setting up netcat (1.10-41) ... build 18-Jan-2018 08:26:58 Setting up python-pip-whl (8.1.1-2ubuntu0.4) ... build 18-Jan-2018 08:26:58 Setting up python-pip (8.1.1-2ubuntu0.4) ... build 18-Jan-2018 08:26:59 Processing triggers for libc-bin (2.23-0ubuntu9) ... build 18-Jan-2018 08:26:59 Processing triggers for ca-certificates (20170717~16.04.1) ... build 18-Jan-2018 08:26:59 Updating certificates in /etc/ssl/certs... build 18-Jan-2018 08:27:00 148 added, 0 removed; done. build 18-Jan-2018 08:27:00 Running hooks in /etc/ca-certificates/update.d... build 18-Jan-2018 08:27:00 done. build 18-Jan-2018 08:27:01 Collecting setuptools build 18-Jan-2018 08:27:02 Downloading setuptools-38.4.0-py2.py3-none-any.whl (489kB) build 18-Jan-2018 08:27:02 Installing collected packages: setuptools build 18-Jan-2018 08:27:02 Successfully installed setuptools-38.4.0 build 18-Jan-2018 08:27:02 You are using pip version 8.1.1, however version 9.0.1 is available. build 18-Jan-2018 08:27:02 You should consider upgrading via the 'pip install --upgrade pip' command. build 18-Jan-2018 08:27:02 Adding system user `clowder' (UID 105) ... build 18-Jan-2018 08:27:02 Adding new user `clowder' (UID 105) with group `nogroup' ... build 18-Jan-2018 08:27:03 Creating home directory `/home/clowder' ... build 18-Jan-2018 08:27:04 ---> f84f97e925dd build 18-Jan-2018 08:27:04 Removing intermediate container 3ac6f3ff18a0 build 18-Jan-2018 08:27:04 Step 4/6 : COPY pyclowder /tmp/pyclowder/pyclowder build 18-Jan-2018 08:27:05 ---> 1b34f852dab2 build 18-Jan-2018 08:27:05 Removing intermediate container 6a05fe255132 build 18-Jan-2018 08:27:05 Step 5/6 : COPY setup.py requirements.txt /tmp/pyclowder/ build 18-Jan-2018 08:27:05 ---> 9a97eb248cae build 18-Jan-2018 08:27:05 Removing intermediate container 0e6b056a406e build 18-Jan-2018 08:27:05 Step 6/6 : RUN pip install --upgrade -r /tmp/pyclowder/requirements.txt && pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder build 18-Jan-2018 08:27:06 ---> Running in 72577f61ae30 build 18-Jan-2018 08:27:07 Collecting enum34==1.1.6 (from -r /tmp/pyclowder/requirements.txt (line 1)) build 18-Jan-2018 08:27:07 Downloading enum34-1.1.6-py2-none-any.whl build 18-Jan-2018 08:27:07 Collecting pika==0.10.0 (from -r /tmp/pyclowder/requirements.txt (line 2)) build 18-Jan-2018 08:27:07 Downloading pika-0.10.0-py2.py3-none-any.whl (92kB) build 18-Jan-2018 08:27:07 Collecting PyYAML==3.11 (from -r /tmp/pyclowder/requirements.txt (line 3)) build 18-Jan-2018 08:27:07 Downloading PyYAML-3.11.zip (371kB) build 18-Jan-2018 08:27:08 Collecting requests==2.10.0 (from -r /tmp/pyclowder/requirements.txt (line 4)) build 18-Jan-2018 08:27:08 Downloading requests-2.10.0-py2.py3-none-any.whl (506kB) build 18-Jan-2018 08:27:08 Collecting wheel==0.24.0 (from -r /tmp/pyclowder/requirements.txt (line 5)) build 18-Jan-2018 08:27:08 Downloading wheel-0.24.0-py2.py3-none-any.whl (63kB) build 18-Jan-2018 08:27:08 Collecting pytest==3.0.3 (from -r /tmp/pyclowder/requirements.txt (line 6)) build 18-Jan-2018 08:27:08 Downloading pytest-3.0.3-py2.py3-none-any.whl (169kB) build 18-Jan-2018 08:27:08 Collecting pytest-pep8==1.0.6 (from -r /tmp/pyclowder/requirements.txt (line 7)) build 18-Jan-2018 08:27:08 Downloading pytest-pep8-1.0.6.tar.gz build 18-Jan-2018 08:27:08 Collecting urllib3==1.14 (from -r /tmp/pyclowder/requirements.txt (line 8)) build 18-Jan-2018 08:27:08 Downloading urllib3-1.14-py2.py3-none-any.whl (89kB) build 18-Jan-2018 08:27:08 Collecting py>=1.4.29 (from pytest==3.0.3->-r /tmp/pyclowder/requirements.txt (line 6)) build 18-Jan-2018 08:27:08 Downloading py-1.5.2-py2.py3-none-any.whl (88kB) build 18-Jan-2018 08:27:08 Collecting pytest-cache (from pytest-pep8==1.0.6->-r /tmp/pyclowder/requirements.txt (line 7)) build 18-Jan-2018 08:27:08 Downloading pytest-cache-1.0.tar.gz build 18-Jan-2018 08:27:09 Collecting pep8>=1.3 (from pytest-pep8==1.0.6->-r /tmp/pyclowder/requirements.txt (line 7)) build 18-Jan-2018 08:27:09 Downloading pep8-1.7.1-py2.py3-none-any.whl (41kB) build 18-Jan-2018 08:27:09 Collecting execnet>=1.1.dev1 (from pytest-cache->pytest-pep8==1.0.6->-r /tmp/pyclowder/requirements.txt (line 7)) build 18-Jan-2018 08:27:09 Downloading execnet-1.5.0-py2.py3-none-any.whl build 18-Jan-2018 08:27:09 Collecting apipkg>=1.4 (from execnet>=1.1.dev1->pytest-cache->pytest-pep8==1.0.6->-r /tmp/pyclowder/requirements.txt (line 7)) build 18-Jan-2018 08:27:09 Downloading apipkg-1.4-py2.py3-none-any.whl build 18-Jan-2018 08:27:09 Building wheels for collected packages: PyYAML, pytest-pep8, pytest-cache build 18-Jan-2018 08:27:09 Running setup.py bdist_wheel for PyYAML: started build 18-Jan-2018 08:27:09 Running setup.py bdist_wheel for PyYAML: finished with status 'error' build 18-Jan-2018 08:27:09 Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-Oygyro/PyYAML/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmp2m4Ahkpip-wheel- --python-tag cp27: build 18-Jan-2018 08:27:09 usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] build 18-Jan-2018 08:27:09 or: -c --help [cmd1 cmd2 ...] build 18-Jan-2018 08:27:09 or: -c --help-commands build 18-Jan-2018 08:27:09 or: -c cmd --help build 18-Jan-2018 08:27:09 build 18-Jan-2018 08:27:09 error: invalid command 'bdist_wheel' build 18-Jan-2018 08:27:09 build 18-Jan-2018 08:27:09 ---------------------------------------- build 18-Jan-2018 08:27:09 Running setup.py clean for PyYAML build 18-Jan-2018 08:27:09  Failed building wheel for PyYAML build 18-Jan-2018 08:27:09  Running setup.py bdist_wheel for pytest-pep8: started build 18-Jan-2018 08:27:09 Running setup.py bdist_wheel for pytest-pep8: finished with status 'error' build 18-Jan-2018 08:27:09 Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-Oygyro/pytest-pep8/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpAg75uypip-wheel- --python-tag cp27: build 18-Jan-2018 08:27:09 usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] build 18-Jan-2018 08:27:09 or: -c --help [cmd1 cmd2 ...] build 18-Jan-2018 08:27:09 or: -c --help-commands build 18-Jan-2018 08:27:09 or: -c cmd --help build 18-Jan-2018 08:27:09 build 18-Jan-2018 08:27:09 error: invalid command 'bdist_wheel' build 18-Jan-2018 08:27:09 build 18-Jan-2018 08:27:09 ---------------------------------------- build 18-Jan-2018 08:27:09 Running setup.py clean for pytest-pep8 build 18-Jan-2018 08:27:09  Failed building wheel for pytest-pep8 build 18-Jan-2018 08:27:09  Running setup.py bdist_wheel for pytest-cache: started build 18-Jan-2018 08:27:09 Running setup.py bdist_wheel for pytest-cache: finished with status 'error' build 18-Jan-2018 08:27:09 Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-Oygyro/pytest-cache/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpEhQStdpip-wheel- --python-tag cp27: build 18-Jan-2018 08:27:09 usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] build 18-Jan-2018 08:27:09 or: -c --help [cmd1 cmd2 ...] build 18-Jan-2018 08:27:09 or: -c --help-commands build 18-Jan-2018 08:27:09 or: -c cmd --help build 18-Jan-2018 08:27:09 build 18-Jan-2018 08:27:09 error: invalid command 'bdist_wheel' build 18-Jan-2018 08:27:09 build 18-Jan-2018 08:27:09 ---------------------------------------- build 18-Jan-2018 08:27:09  Failed building wheel for pytest-cache build 18-Jan-2018 08:27:09  Running setup.py clean for pytest-cache build 18-Jan-2018 08:27:09 Failed to build PyYAML pytest-pep8 pytest-cache build 18-Jan-2018 08:27:09 Installing collected packages: enum34, pika, PyYAML, requests, wheel, py, pytest, apipkg, execnet, pytest-cache, pep8, pytest-pep8, urllib3 build 18-Jan-2018 08:27:10 Running setup.py install for PyYAML: started build 18-Jan-2018 08:27:10 Running setup.py install for PyYAML: finished with status 'done' build 18-Jan-2018 08:27:10 Running setup.py install for pytest-cache: started build 18-Jan-2018 08:27:10 Running setup.py install for pytest-cache: finished with status 'done' build 18-Jan-2018 08:27:10 Running setup.py install for pytest-pep8: started build 18-Jan-2018 08:27:11 Running setup.py install for pytest-pep8: finished with status 'done' build 18-Jan-2018 08:27:11 Successfully installed PyYAML-3.11 apipkg-1.4 enum34-1.1.6 execnet-1.5.0 pep8-1.7.1 pika-0.10.0 py-1.5.2 pytest-3.0.3 pytest-cache-1.0 pytest-pep8-1.0.6 requests-2.10.0 urllib3-1.14 wheel-0.24.0 build 18-Jan-2018 08:27:11 You are using pip version 8.1.1, however version 9.0.1 is available. build 18-Jan-2018 08:27:11 You should consider upgrading via the 'pip install --upgrade pip' command. build 18-Jan-2018 08:27:12 Processing /tmp/pyclowder build 18-Jan-2018 08:27:12 Installing collected packages: pyclowder build 18-Jan-2018 08:27:12 Running setup.py install for pyclowder: started build 18-Jan-2018 08:27:12 Running setup.py install for pyclowder: finished with status 'done' build 18-Jan-2018 08:27:12 Successfully installed pyclowder-2.0.0 build 18-Jan-2018 08:27:12 You are using pip version 8.1.1, however version 9.0.1 is available. build 18-Jan-2018 08:27:12 You should consider upgrading via the 'pip install --upgrade pip' command. build 18-Jan-2018 08:27:13  ---> 494e8185d5cf build 18-Jan-2018 08:27:13 Removing intermediate container 72577f61ae30 build 18-Jan-2018 08:27:13 Successfully built 494e8185d5cf build 18-Jan-2018 08:27:13 Untagged: 1826:latest build 18-Jan-2018 08:27:13 Sending build context to Docker daemon 11.78 kB build 18-Jan-2018 08:27:13 build 18-Jan-2018 08:27:13 Step 1/7 : FROM clowder/pyclowder:2 build 18-Jan-2018 08:27:13 ---> 494e8185d5cf build 18-Jan-2018 08:27:13 Step 2/7 : MAINTAINER Rob Kooper build 18-Jan-2018 08:27:13 ---> Running in 46afc3d66fbd build 18-Jan-2018 08:27:14 ---> a13e52e9a97e build 18-Jan-2018 08:27:14 Removing intermediate container 46afc3d66fbd build 18-Jan-2018 08:27:14 Step 3/7 : ENV RABBITMQ_URI "" RABBITMQ_EXCHANGE "clowder" RABBITMQ_QUEUE "ncsa.wordcount" REGISTRATION_ENDPOINTS "https://clowder.ncsa.illinois.edu/extractors" MAIN_SCRIPT "wordcount.py" build 18-Jan-2018 08:27:14 ---> Running in 648ec73d701a build 18-Jan-2018 08:27:14 ---> d6ffd6e6c8cc build 18-Jan-2018 08:27:14 Removing intermediate container 648ec73d701a build 18-Jan-2018 08:27:14 Step 4/7 : USER clowder build 18-Jan-2018 08:27:14 ---> Running in 8946c5ce165e build 18-Jan-2018 08:27:15 ---> 92f0d3e96b0a build 18-Jan-2018 08:27:15 Removing intermediate container 8946c5ce165e build 18-Jan-2018 08:27:15 Step 5/7 : COPY entrypoint.sh *.py extractor_info.json /home/clowder/ build 18-Jan-2018 08:27:15 ---> 185bf332d319 build 18-Jan-2018 08:27:15 Removing intermediate container f8b38f5bcd92 build 18-Jan-2018 08:27:15 Step 6/7 : ENTRYPOINT /home/clowder/entrypoint.sh build 18-Jan-2018 08:27:15 ---> Running in f17cc2133f33 build 18-Jan-2018 08:27:16 ---> 41845417efe0 build 18-Jan-2018 08:27:16 Removing intermediate container f17cc2133f33 build 18-Jan-2018 08:27:16 Step 7/7 : CMD extractor build 18-Jan-2018 08:27:16 ---> Running in be4d43d3b891 build 18-Jan-2018 08:27:16 ---> 5e33b36ed61d build 18-Jan-2018 08:27:16 Removing intermediate container be4d43d3b891 build 18-Jan-2018 08:27:16 Successfully built 5e33b36ed61d build 18-Jan-2018 08:27:16 Untagged: 1826:latest build 18-Jan-2018 08:27:16 Untagged: clowder/pyclowder:latest build 18-Jan-2018 08:27:16 Untagged: clowder/extractors-wordcount:latest simple 18-Jan-2018 08:27:16 Finished task 'docker build and push' with result: Success simple 18-Jan-2018 08:27:16 Starting task 'test results' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit' simple 18-Jan-2018 08:27:16 Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC259-JOB1... simple 18-Jan-2018 08:27:16 Finished task 'test results' with result: Success simple 18-Jan-2018 08:27:16 Running post build plugin 'Docker Container Cleanup' simple 18-Jan-2018 08:27:16 Running post build plugin 'NCover Results Collector' simple 18-Jan-2018 08:27:16 Running post build plugin 'Clover Results Collector' simple 18-Jan-2018 08:27:16 Running post build plugin 'npm Cache Cleanup' simple 18-Jan-2018 08:27:17 Running post build plugin 'Artifact Copier' simple 18-Jan-2018 08:27:17 Finalising the build... simple 18-Jan-2018 08:27:17 Stopping timer. simple 18-Jan-2018 08:27:17 Build CATS-PYC259-JOB1-1 completed. simple 18-Jan-2018 08:27:17 Running on server: post build plugin 'NCover Results Collector' simple 18-Jan-2018 08:27:17 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 18-Jan-2018 08:27:17 Running on server: post build plugin 'Clover Delta Calculator' simple 18-Jan-2018 08:27:17 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 18-Jan-2018 08:27:17 All post build plugins have finished simple 18-Jan-2018 08:27:17 Generating build results summary... simple 18-Jan-2018 08:27:17 Saving build results to disk... simple 18-Jan-2018 08:27:17 Logging substituted variables... simple 18-Jan-2018 08:27:17 Indexing build results... simple 18-Jan-2018 08:27:17 Finished building CATS-PYC259-JOB1-1.