simple 26-Feb-2019 10:47:32 Build Clowder - pyclowder2 - develop - Default Job #21 (CATS-PYC265-JOB1-21) started building on agent buildserver-3.os.ncsa.edu simple 26-Feb-2019 10:47:32 Remote agent on host buildserver-3.os.ncsa.edu simple 26-Feb-2019 10:47:32 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1 simple 26-Feb-2019 10:47:32 Executing build Clowder - pyclowder2 - develop - Default Job #21 (CATS-PYC265-JOB1-21) simple 26-Feb-2019 10:47:32 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 26-Feb-2019 10:47:32 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1 simple 26-Feb-2019 10:47:32 Updating source code to revision: 10debfa0397ca1231d58a0a7f93b887919d02b82 simple 26-Feb-2019 10:47:32 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1/.git'. simple 26-Feb-2019 10:47:32 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1/.git/ simple 26-Feb-2019 10:47:32 Fetching 'refs/heads/develop' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git'. Will try to do a shallow fetch. simple 26-Feb-2019 10:47:32 Warning: Permanently added '[127.0.0.1]:38781' (RSA) to the list of known hosts. simple 26-Feb-2019 10:47:32 From ssh://127.0.0.1:38781/cats/pyclowder2 simple 26-Feb-2019 10:47:32 * [new branch] develop -> develop simple 26-Feb-2019 10:47:32 Checking out revision 10debfa0397ca1231d58a0a7f93b887919d02b82. simple 26-Feb-2019 10:47:32 Switched to branch 'develop' simple 26-Feb-2019 10:47:32 Updated source code to revision: 10debfa0397ca1231d58a0a7f93b887919d02b82 simple 26-Feb-2019 10:47:32 Finished task 'Checkout Default Repository' with result: Success simple 26-Feb-2019 10:47:32 Running pre-build action: VCS Version Collector simple 26-Feb-2019 10:47:32 Starting task 'pytest' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 26-Feb-2019 10:47:32 Beginning to execute external process for build 'Clowder - pyclowder2 - develop - Default Job #21 (CATS-PYC265-JOB1-21)'\n ... running command line: \n/home/bamboo/bamboo-agent-home/temp/CATS-PYC265-JOB1-21-ScriptBuildTask-8424336139626930003.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=develop\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_planRepository_1_branchDisplayName=develop\nbamboo_repository_revision_number=10debfa0397ca1231d58a0a7f93b887919d02b82\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC265-JOB1-21\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_repository_157745161_name=pyclowder2\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1\nbamboo_planRepository_1_name=pyclowder2\nbamboo_buildKey=CATS-PYC265-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=develop\nbamboo_repository_157745161_branch_name=develop\nbamboo_planRepository_name=pyclowder2\nbamboo_buildNumber=21\nbamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC265-JOB1-21\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_agentId=143032321\nbamboo_planName=Clowder - pyclowder2 - develop\nbamboo_shortPlanKey=PYC265\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_shortJobKey=JOB1\nbamboo_planRepository_revision=10debfa0397ca1231d58a0a7f93b887919d02b82\nbamboo_buildTimeStamp=2019-02-26T10:47:32.228-06:00\nbamboo_repository_previous_revision_number=66fc7701b866370e2dd10c82ebabd80de793b232\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_repository_157745161_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_planRepository_previousRevision=66fc7701b866370e2dd10c82ebabd80de793b232\nbamboo_repository_157745161_git_username=\nbamboo_repository_git_branch=develop\nbamboo_buildResultKey=CATS-PYC265-JOB1-21\nbamboo_repository_branch_name=develop\nbamboo_buildPlanName=Clowder - pyclowder2 - develop - Default Job\nbamboo_planRepository_1_revision=10debfa0397ca1231d58a0a7f93b887919d02b82\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=pyclowder2\nbamboo_buildFailed=false\nbamboo_repository_157745161_git_branch=develop\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_branch=develop\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_repository_157745161_previous_revision_number=66fc7701b866370e2dd10c82ebabd80de793b232\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=66fc7701b866370e2dd10c82ebabd80de793b232\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_planRepository_branchDisplayName=develop\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=develop\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-157548561\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_repository_157745161_revision_number=10debfa0397ca1231d58a0a7f93b887919d02b82\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1\nbamboo_planKey=CATS-PYC265\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_1_branchName=develop\n build 26-Feb-2019 10:47:33 New python executable in /tmp/virtualenv/pyclowder2/bin/python2 build 26-Feb-2019 10:47:33 Also creating executable in /tmp/virtualenv/pyclowder2/bin/python build 26-Feb-2019 10:47:36 Installing setuptools, pkg_resources, pip, wheel...done. build 26-Feb-2019 10:47:36 Running virtualenv with interpreter /usr/bin/python2 error 26-Feb-2019 10:47:36 DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. build 26-Feb-2019 10:47:36 Collecting enum34==1.1.6 (from -r requirements.txt (line 1)) build 26-Feb-2019 10:47:36 Using cached https://files.pythonhosted.org/packages/c5/db/e56e6b4bbac7c4a06de1c50de6fe1ef3810018ae11732a50f15f62c7d050/enum34-1.1.6-py2-none-any.whl build 26-Feb-2019 10:47:36 Collecting pika==0.11.2 (from -r requirements.txt (line 2)) build 26-Feb-2019 10:47:36 Using cached https://files.pythonhosted.org/packages/76/b4/0ada6918ac79ce4d8d45d0ba436ee21a1ef685047fb1dde4d2de0178b327/pika-0.11.2-py2.py3-none-any.whl build 26-Feb-2019 10:47:36 Collecting PyYAML==3.12 (from -r requirements.txt (line 3)) build 26-Feb-2019 10:47:36 Collecting requests==2.18.4 (from -r requirements.txt (line 4)) build 26-Feb-2019 10:47:36 Using cached https://files.pythonhosted.org/packages/49/df/50aa1999ab9bde74656c2919d9c0c085fd2b3775fd3eca826012bef76d8c/requests-2.18.4-py2.py3-none-any.whl build 26-Feb-2019 10:47:37 Collecting wheel==0.24.0 (from -r requirements.txt (line 5)) build 26-Feb-2019 10:47:37 Using cached https://files.pythonhosted.org/packages/e8/14/eaaac12b0432c984a27ad0050a5a0bedc6135df35a0f5f1f35228faf12d4/wheel-0.24.0-py2.py3-none-any.whl build 26-Feb-2019 10:47:37 Collecting urllib3==1.22 (from -r requirements.txt (line 6)) build 26-Feb-2019 10:47:37 Using cached https://files.pythonhosted.org/packages/63/cb/6965947c13a94236f6d4b8223e21beb4d576dc72e8130bd7880f600839b8/urllib3-1.22-py2.py3-none-any.whl build 26-Feb-2019 10:47:37 Collecting pytest==3.0.3 (from -r requirements.txt (line 7)) build 26-Feb-2019 10:47:37 Using cached https://files.pythonhosted.org/packages/a4/e9/bf75a9a91c4a545bad262937d1defa90d95ac912118a706406e21aef889a/pytest-3.0.3-py2.py3-none-any.whl build 26-Feb-2019 10:47:37 Collecting pytest-pep8==1.0.6 (from -r requirements.txt (line 8)) build 26-Feb-2019 10:47:37 Collecting certifi>=2017.4.17 (from requests==2.18.4->-r requirements.txt (line 4)) build 26-Feb-2019 10:47:37 Using cached https://files.pythonhosted.org/packages/9f/e0/accfc1b56b57e9750eba272e24c4dddeac86852c2bebd1236674d7887e8a/certifi-2018.11.29-py2.py3-none-any.whl build 26-Feb-2019 10:47:37 Collecting chardet<3.1.0,>=3.0.2 (from requests==2.18.4->-r requirements.txt (line 4)) build 26-Feb-2019 10:47:37 Using cached https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl build 26-Feb-2019 10:47:37 Collecting idna<2.7,>=2.5 (from requests==2.18.4->-r requirements.txt (line 4)) build 26-Feb-2019 10:47:37 Using cached https://files.pythonhosted.org/packages/27/cc/6dd9a3869f15c2edfab863b992838277279ce92663d334df9ecf5106f5c6/idna-2.6-py2.py3-none-any.whl build 26-Feb-2019 10:47:37 Collecting py>=1.4.29 (from pytest==3.0.3->-r requirements.txt (line 7)) build 26-Feb-2019 10:47:37 Downloading https://files.pythonhosted.org/packages/76/bc/394ad449851729244a97857ee14d7cba61ddb268dce3db538ba2f2ba1f0f/py-1.8.0-py2.py3-none-any.whl (83kB) build 26-Feb-2019 10:47:37 Collecting pep8>=1.3 (from pytest-pep8==1.0.6->-r requirements.txt (line 8)) build 26-Feb-2019 10:47:37 Using cached https://files.pythonhosted.org/packages/42/3f/669429ce58de2c22d8d2c542752e137ec4b9885fff398d3eceb1a7f5acb4/pep8-1.7.1-py2.py3-none-any.whl build 26-Feb-2019 10:47:37 Collecting pytest-cache (from pytest-pep8==1.0.6->-r requirements.txt (line 8)) build 26-Feb-2019 10:47:37 Collecting execnet>=1.1.dev1 (from pytest-cache->pytest-pep8==1.0.6->-r requirements.txt (line 8)) build 26-Feb-2019 10:47:37 Using cached https://files.pythonhosted.org/packages/f9/76/3343e69a2a1602052f587898934e5fea395d22310d39c07955596597227c/execnet-1.5.0-py2.py3-none-any.whl build 26-Feb-2019 10:47:37 Collecting apipkg>=1.4 (from execnet>=1.1.dev1->pytest-cache->pytest-pep8==1.0.6->-r requirements.txt (line 8)) build 26-Feb-2019 10:47:37 Using cached https://files.pythonhosted.org/packages/67/08/4815a09603fc800209431bec5b8bd2acf2f95abdfb558a44a42507fb94da/apipkg-1.5-py2.py3-none-any.whl build 26-Feb-2019 10:47:37 Installing collected packages: enum34, pika, PyYAML, certifi, chardet, idna, urllib3, requests, wheel, py, pytest, pep8, apipkg, execnet, pytest-cache, pytest-pep8 build 26-Feb-2019 10:47:38 Found existing installation: wheel 0.33.1 build 26-Feb-2019 10:47:38 Uninstalling wheel-0.33.1: build 26-Feb-2019 10:47:38 Successfully uninstalled wheel-0.33.1 build 26-Feb-2019 10:47:38 Successfully installed PyYAML-3.12 apipkg-1.5 certifi-2018.11.29 chardet-3.0.4 enum34-1.1.6 execnet-1.5.0 idna-2.6 pep8-1.7.1 pika-0.11.2 py-1.8.0 pytest-3.0.3 pytest-cache-1.0 pytest-pep8-1.0.6 requests-2.18.4 urllib3-1.22 wheel-0.24.0 build 26-Feb-2019 10:47:38 ============================= test session starts ============================== build 26-Feb-2019 10:47:38 platform linux2 -- Python 2.7.12, pytest-3.0.3, py-1.8.0, pluggy-0.4.0 build 26-Feb-2019 10:47:38 rootdir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1, inifile: setup.cfg build 26-Feb-2019 10:47:38 plugins: pep8-1.0.6 build 26-Feb-2019 10:47:38 collected 20 items build 26-Feb-2019 10:47:38 build 26-Feb-2019 10:47:38 setup.py . build 26-Feb-2019 10:47:38 contrib/monitor/monitor.py . build 26-Feb-2019 10:47:38 docs/source/conf.py . build 26-Feb-2019 10:47:38 pyclowder/__init__.py . build 26-Feb-2019 10:47:38 pyclowder/client.py . build 26-Feb-2019 10:47:38 pyclowder/collections.py . build 26-Feb-2019 10:47:39 pyclowder/connectors.py . build 26-Feb-2019 10:47:39 pyclowder/datasets.py . build 26-Feb-2019 10:47:39 pyclowder/extractors.py . build 26-Feb-2019 10:47:39 pyclowder/files.py . build 26-Feb-2019 10:47:39 pyclowder/geostreams.py . build 26-Feb-2019 10:47:39 pyclowder/sections.py . build 26-Feb-2019 10:47:39 pyclowder/utils.py . build 26-Feb-2019 10:47:39 sample-extractors/binary-preview/binary_extractor.py . build 26-Feb-2019 10:47:39 sample-extractors/echo/echo.py . build 26-Feb-2019 10:47:39 sample-extractors/simple-extractor/simple_extractor.py . build 26-Feb-2019 10:47:39 sample-extractors/simple-r-extractor/r_extractor.py . build 26-Feb-2019 10:47:39 sample-extractors/wordcount/wordcount.py . build 26-Feb-2019 10:47:39 sample-extractors/wordcount-simple-extractor/wordcount.py . build 26-Feb-2019 10:47:39 tests/clientTest.py . build 26-Feb-2019 10:47:39 build 26-Feb-2019 10:47:39 - generated xml file: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1/test-reports/results.xml - build 26-Feb-2019 10:47:39 ========================== 20 passed in 0.40 seconds =========================== simple 26-Feb-2019 10:47:39 Finished task 'pytest' with result: Success simple 26-Feb-2019 10:47:39 Starting task 'docker build' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 26-Feb-2019 10:47:39 Beginning to execute external process for build 'Clowder - pyclowder2 - develop - Default Job #21 (CATS-PYC265-JOB1-21)'\n ... running command line: \n/bin/sh docker.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1\n ... using extra environment variables: 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Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC265-JOB1-21\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_agentId=143032321\nbamboo_planName=Clowder - pyclowder2 - develop\nbamboo_shortPlanKey=PYC265\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_shortJobKey=JOB1\nbamboo_planRepository_revision=10debfa0397ca1231d58a0a7f93b887919d02b82\nbamboo_buildTimeStamp=2019-02-26T10:47:32.228-06:00\nbamboo_repository_previous_revision_number=66fc7701b866370e2dd10c82ebabd80de793b232\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_repository_157745161_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_3=/home/bamboo/bamboo-agent-home/temp/CATS-PYC265-JOB1-21-ScriptBuildTask-8424336139626930003.sh\nbamboo_planRepository_previousRevision=66fc7701b866370e2dd10c82ebabd80de793b232\nbamboo_repository_157745161_git_username=\nbamboo_repository_git_branch=develop\nbamboo_buildResultKey=CATS-PYC265-JOB1-21\nbamboo_repository_branch_name=develop\nbamboo_buildPlanName=Clowder - pyclowder2 - develop - Default Job\nbamboo_planRepository_1_revision=10debfa0397ca1231d58a0a7f93b887919d02b82\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=pyclowder2\nbamboo_buildFailed=false\nbamboo_repository_157745161_git_branch=develop\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_branch=develop\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_repository_157745161_previous_revision_number=66fc7701b866370e2dd10c82ebabd80de793b232\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=66fc7701b866370e2dd10c82ebabd80de793b232\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_planRepository_branchDisplayName=develop\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=develop\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-157548561\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_repository_157745161_revision_number=10debfa0397ca1231d58a0a7f93b887919d02b82\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1\nbamboo_planKey=CATS-PYC265\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_1_branchName=develop\n build 26-Feb-2019 10:47:39 Sending build context to Docker daemon 267.8kB build 26-Feb-2019 10:47:39 build 26-Feb-2019 10:47:39 Step 1/9 : FROM ubuntu:16.04 build 26-Feb-2019 10:47:39 16.04: Pulling from library/ubuntu build 26-Feb-2019 10:47:40 7b722c1070cd: Pulling fs layer build 26-Feb-2019 10:47:40 5fbf74db61f1: Pulling fs layer build 26-Feb-2019 10:47:40 ed41cb72e5c9: Pulling fs layer build 26-Feb-2019 10:47:40 7ea47a67709e: Pulling fs layer build 26-Feb-2019 10:47:40 7ea47a67709e: Waiting build 26-Feb-2019 10:47:40 ed41cb72e5c9: Verifying Checksum build 26-Feb-2019 10:47:40 ed41cb72e5c9: Download complete build 26-Feb-2019 10:47:40 5fbf74db61f1: Verifying Checksum build 26-Feb-2019 10:47:40 5fbf74db61f1: Download complete build 26-Feb-2019 10:47:40 7ea47a67709e: Verifying Checksum build 26-Feb-2019 10:47:40 7ea47a67709e: Download complete build 26-Feb-2019 10:47:41 7b722c1070cd: Verifying Checksum build 26-Feb-2019 10:47:41 7b722c1070cd: Download complete build 26-Feb-2019 10:47:43 7b722c1070cd: Pull complete build 26-Feb-2019 10:47:43 5fbf74db61f1: Pull complete build 26-Feb-2019 10:47:44 ed41cb72e5c9: Pull complete build 26-Feb-2019 10:47:44 7ea47a67709e: Pull complete build 26-Feb-2019 10:47:44 Digest: sha256:e4a134999bea4abb4a27bc437e6118fdddfb172e1b9d683129b74d254af51675 build 26-Feb-2019 10:47:44 Status: Downloaded newer image for ubuntu:16.04 build 26-Feb-2019 10:47:44 ---> 7e87e2b3bf7a build 26-Feb-2019 10:47:44 Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" build 26-Feb-2019 10:47:44 ---> Running in f4f1ae2d9634 build 26-Feb-2019 10:47:45 Removing intermediate container f4f1ae2d9634 build 26-Feb-2019 10:47:45 ---> 30f0fa26d340 build 26-Feb-2019 10:47:45 Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* build 26-Feb-2019 10:47:45 ---> Running in 14f93b0bea97 build 26-Feb-2019 10:47:52 Reading package lists... build 26-Feb-2019 10:47:53 Building dependency tree... build 26-Feb-2019 10:47:53 Reading state information... build 26-Feb-2019 10:47:53 The following additional packages will be installed: build 26-Feb-2019 10:47:53 ca-certificates libexpat1 libffi6 libpython-stdlib libpython2.7-minimal build 26-Feb-2019 10:47:53 libpython2.7-stdlib libsqlite3-0 libssl1.0.0 mime-support openssl build 26-Feb-2019 10:47:53 python-minimal python-pip-whl python2.7 python2.7-minimal build 26-Feb-2019 10:47:53 Suggested packages: build 26-Feb-2019 10:47:53 python-doc python-tk python2.7-doc binutils binfmt-support build 26-Feb-2019 10:47:53 Recommended packages: build 26-Feb-2019 10:47:53 file build-essential python-all-dev python-setuptools python-wheel build 26-Feb-2019 10:47:53 The following NEW packages will be installed: build 26-Feb-2019 10:47:53 ca-certificates libexpat1 libffi6 libpython-stdlib libpython2.7-minimal build 26-Feb-2019 10:47:53 libpython2.7-stdlib libsqlite3-0 libssl1.0.0 mime-support openssl python build 26-Feb-2019 10:47:53 python-minimal python-pip python-pip-whl python2.7 python2.7-minimal build 26-Feb-2019 10:47:53 0 upgraded, 16 newly installed, 0 to remove and 9 not upgraded. build 26-Feb-2019 10:47:53 Need to get 7392 kB of archives. build 26-Feb-2019 10:47:53 After this operation, 24.8 MB of additional disk space will be used. build 26-Feb-2019 10:47:53 Get:1 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-minimal amd64 2.7.12-1ubuntu0~16.04.4 [339 kB] build 26-Feb-2019 10:47:54 Get:2 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7-minimal amd64 2.7.12-1ubuntu0~16.04.4 [1261 kB] build 26-Feb-2019 10:47:55 Get:3 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-minimal amd64 2.7.12-1~16.04 [28.1 kB] build 26-Feb-2019 10:47:55 Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 mime-support all 3.59ubuntu1 [31.0 kB] build 26-Feb-2019 10:47:55 Get:5 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libexpat1 amd64 2.1.0-7ubuntu0.16.04.3 [71.2 kB] build 26-Feb-2019 10:47:55 Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libffi6 amd64 3.2.1-4 [17.8 kB] build 26-Feb-2019 10:47:55 Get:7 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsqlite3-0 amd64 3.11.0-1ubuntu1 [396 kB] build 26-Feb-2019 10:47:55 Get:8 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libssl1.0.0 amd64 1.0.2g-1ubuntu4.14 [1085 kB] build 26-Feb-2019 10:47:56 Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-stdlib amd64 2.7.12-1ubuntu0~16.04.4 [1880 kB] build 26-Feb-2019 10:47:59 Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7 amd64 2.7.12-1ubuntu0~16.04.4 [224 kB] build 26-Feb-2019 10:47:59 Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython-stdlib amd64 2.7.12-1~16.04 [7768 B] build 26-Feb-2019 10:47:59 Get:12 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python amd64 2.7.12-1~16.04 [137 kB] build 26-Feb-2019 10:47:59 Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 openssl amd64 1.0.2g-1ubuntu4.14 [492 kB] build 26-Feb-2019 10:48:00 Get:14 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 ca-certificates all 20170717~16.04.2 [167 kB] build 26-Feb-2019 10:48:01 Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 python-pip-whl all 8.1.1-2ubuntu0.4 [1110 kB] build 26-Feb-2019 10:48:03 Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 python-pip all 8.1.1-2ubuntu0.4 [144 kB] build 26-Feb-2019 10:48:03 debconf: delaying package configuration, since apt-utils is not installed build 26-Feb-2019 10:48:03 Fetched 7392 kB in 10s (732 kB/s) build 26-Feb-2019 10:48:03 Selecting previously unselected package libpython2.7-minimal:amd64. build 26-Feb-2019 10:48:03 (Reading database ... build 26-Feb-2019 10:48:03 (Reading database ... 5% build 26-Feb-2019 10:48:03 (Reading database ... 10% build 26-Feb-2019 10:48:03 (Reading database ... 15% build 26-Feb-2019 10:48:03 (Reading database ... 20% build 26-Feb-2019 10:48:03 (Reading database ... 25% build 26-Feb-2019 10:48:03 (Reading database ... 30% build 26-Feb-2019 10:48:03 (Reading database ... 35% build 26-Feb-2019 10:48:03 (Reading database ... 40% build 26-Feb-2019 10:48:03 (Reading database ... 45% build 26-Feb-2019 10:48:03 (Reading database ... 50% build 26-Feb-2019 10:48:03 (Reading database ... 55% build 26-Feb-2019 10:48:03 (Reading database ... 60% build 26-Feb-2019 10:48:03 (Reading database ... 65% build 26-Feb-2019 10:48:03 (Reading database ... 70% build 26-Feb-2019 10:48:03 (Reading database ... 75% build 26-Feb-2019 10:48:03 (Reading database ... 80% build 26-Feb-2019 10:48:03 (Reading database ... 85% build 26-Feb-2019 10:48:03 (Reading database ... 90% build 26-Feb-2019 10:48:03 (Reading database ... 95% build 26-Feb-2019 10:48:03 (Reading database ... 100% build 26-Feb-2019 10:48:03 (Reading database ... 4768 files and directories currently installed.) build 26-Feb-2019 10:48:03 Preparing to unpack .../libpython2.7-minimal_2.7.12-1ubuntu0~16.04.4_amd64.deb ... build 26-Feb-2019 10:48:03 Unpacking libpython2.7-minimal:amd64 (2.7.12-1ubuntu0~16.04.4) ... build 26-Feb-2019 10:48:04 Selecting previously unselected package python2.7-minimal. build 26-Feb-2019 10:48:04 Preparing to unpack .../python2.7-minimal_2.7.12-1ubuntu0~16.04.4_amd64.deb ... build 26-Feb-2019 10:48:04 Unpacking python2.7-minimal (2.7.12-1ubuntu0~16.04.4) ... build 26-Feb-2019 10:48:05 Selecting previously unselected package python-minimal. build 26-Feb-2019 10:48:05 Preparing to unpack .../python-minimal_2.7.12-1~16.04_amd64.deb ... build 26-Feb-2019 10:48:05 Unpacking python-minimal (2.7.12-1~16.04) ... build 26-Feb-2019 10:48:05 Selecting previously unselected package mime-support. build 26-Feb-2019 10:48:05 Preparing to unpack .../mime-support_3.59ubuntu1_all.deb ... build 26-Feb-2019 10:48:05 Unpacking mime-support (3.59ubuntu1) ... build 26-Feb-2019 10:48:06 Selecting previously unselected package libexpat1:amd64. build 26-Feb-2019 10:48:06 Preparing to unpack .../libexpat1_2.1.0-7ubuntu0.16.04.3_amd64.deb ... build 26-Feb-2019 10:48:06 Unpacking libexpat1:amd64 (2.1.0-7ubuntu0.16.04.3) ... build 26-Feb-2019 10:48:07 Selecting previously unselected package libffi6:amd64. build 26-Feb-2019 10:48:07 Preparing to unpack .../libffi6_3.2.1-4_amd64.deb ... build 26-Feb-2019 10:48:07 Unpacking libffi6:amd64 (3.2.1-4) ... build 26-Feb-2019 10:48:08 Selecting previously unselected package libsqlite3-0:amd64. build 26-Feb-2019 10:48:08 Preparing to unpack .../libsqlite3-0_3.11.0-1ubuntu1_amd64.deb ... build 26-Feb-2019 10:48:08 Unpacking libsqlite3-0:amd64 (3.11.0-1ubuntu1) ... build 26-Feb-2019 10:48:08 Selecting previously unselected package libssl1.0.0:amd64. build 26-Feb-2019 10:48:08 Preparing to unpack .../libssl1.0.0_1.0.2g-1ubuntu4.14_amd64.deb ... build 26-Feb-2019 10:48:08 Unpacking libssl1.0.0:amd64 (1.0.2g-1ubuntu4.14) ... build 26-Feb-2019 10:48:10 Selecting previously unselected package libpython2.7-stdlib:amd64. build 26-Feb-2019 10:48:10 Preparing to unpack .../libpython2.7-stdlib_2.7.12-1ubuntu0~16.04.4_amd64.deb ... build 26-Feb-2019 10:48:10 Unpacking libpython2.7-stdlib:amd64 (2.7.12-1ubuntu0~16.04.4) ... build 26-Feb-2019 10:48:11 Selecting previously unselected package python2.7. build 26-Feb-2019 10:48:11 Preparing to unpack .../python2.7_2.7.12-1ubuntu0~16.04.4_amd64.deb ... build 26-Feb-2019 10:48:11 Unpacking python2.7 (2.7.12-1ubuntu0~16.04.4) ... build 26-Feb-2019 10:48:11 Selecting previously unselected package libpython-stdlib:amd64. build 26-Feb-2019 10:48:11 Preparing to unpack .../libpython-stdlib_2.7.12-1~16.04_amd64.deb ... build 26-Feb-2019 10:48:11 Unpacking libpython-stdlib:amd64 (2.7.12-1~16.04) ... build 26-Feb-2019 10:48:11 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 26-Feb-2019 10:48:12 Setting up libpython2.7-minimal:amd64 (2.7.12-1ubuntu0~16.04.4) ... build 26-Feb-2019 10:48:12 Setting up python2.7-minimal (2.7.12-1ubuntu0~16.04.4) ... build 26-Feb-2019 10:48:12 Linking and byte-compiling packages for runtime python2.7... build 26-Feb-2019 10:48:12 Setting up python-minimal (2.7.12-1~16.04) ... build 26-Feb-2019 10:48:13 Selecting previously unselected package python. build 26-Feb-2019 10:48:13 (Reading database ... build 26-Feb-2019 10:48:13 (Reading database ... 5% build 26-Feb-2019 10:48:13 (Reading database ... 10% build 26-Feb-2019 10:48:13 (Reading database ... 15% build 26-Feb-2019 10:48:13 (Reading database ... 20% build 26-Feb-2019 10:48:13 (Reading database ... 25% build 26-Feb-2019 10:48:13 (Reading database ... 30% build 26-Feb-2019 10:48:13 (Reading database ... 35% build 26-Feb-2019 10:48:13 (Reading database ... 40% build 26-Feb-2019 10:48:13 (Reading database ... 45% build 26-Feb-2019 10:48:13 (Reading database ... 50% build 26-Feb-2019 10:48:13 (Reading database ... 55% build 26-Feb-2019 10:48:13 (Reading database ... 60% build 26-Feb-2019 10:48:13 (Reading database ... 65% build 26-Feb-2019 10:48:13 (Reading database ... 70% build 26-Feb-2019 10:48:13 (Reading database ... 75% build 26-Feb-2019 10:48:13 (Reading database ... 80% build 26-Feb-2019 10:48:13 (Reading database ... 85% build 26-Feb-2019 10:48:13 (Reading database ... 90% build 26-Feb-2019 10:48:13 (Reading database ... 95% build 26-Feb-2019 10:48:13 (Reading database ... 100% build 26-Feb-2019 10:48:13 (Reading database ... 5579 files and directories currently installed.) build 26-Feb-2019 10:48:13 Preparing to unpack .../python_2.7.12-1~16.04_amd64.deb ... build 26-Feb-2019 10:48:13 Unpacking python (2.7.12-1~16.04) ... build 26-Feb-2019 10:48:14 Selecting previously unselected package openssl. build 26-Feb-2019 10:48:14 Preparing to unpack .../openssl_1.0.2g-1ubuntu4.14_amd64.deb ... build 26-Feb-2019 10:48:14 Unpacking openssl (1.0.2g-1ubuntu4.14) ... build 26-Feb-2019 10:48:17 Selecting previously unselected package ca-certificates. build 26-Feb-2019 10:48:17 Preparing to unpack .../ca-certificates_20170717~16.04.2_all.deb ... build 26-Feb-2019 10:48:17 Unpacking ca-certificates (20170717~16.04.2) ... build 26-Feb-2019 10:48:18 Selecting previously unselected package python-pip-whl. build 26-Feb-2019 10:48:18 Preparing to unpack .../python-pip-whl_8.1.1-2ubuntu0.4_all.deb ... build 26-Feb-2019 10:48:18 Unpacking python-pip-whl (8.1.1-2ubuntu0.4) ... build 26-Feb-2019 10:48:19 Selecting previously unselected package python-pip. build 26-Feb-2019 10:48:19 Preparing to unpack .../python-pip_8.1.1-2ubuntu0.4_all.deb ... build 26-Feb-2019 10:48:19 Unpacking python-pip (8.1.1-2ubuntu0.4) ... build 26-Feb-2019 10:48:19 Setting up mime-support (3.59ubuntu1) ... build 26-Feb-2019 10:48:19 Setting up libexpat1:amd64 (2.1.0-7ubuntu0.16.04.3) ... build 26-Feb-2019 10:48:19 Setting up libffi6:amd64 (3.2.1-4) ... build 26-Feb-2019 10:48:20 Setting up libsqlite3-0:amd64 (3.11.0-1ubuntu1) ... build 26-Feb-2019 10:48:20 Setting up libssl1.0.0:amd64 (1.0.2g-1ubuntu4.14) ... build 26-Feb-2019 10:48:20 debconf: unable to initialize frontend: Dialog build 26-Feb-2019 10:48:20 debconf: (TERM is not set, so the dialog frontend is not usable.) build 26-Feb-2019 10:48:20 debconf: falling back to frontend: Readline build 26-Feb-2019 10:48:20 debconf: unable to initialize frontend: Readline build 26-Feb-2019 10:48:20 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) build 26-Feb-2019 10:48:20 debconf: falling back to frontend: Teletype build 26-Feb-2019 10:48:20 Setting up libpython2.7-stdlib:amd64 (2.7.12-1ubuntu0~16.04.4) ... build 26-Feb-2019 10:48:21 Setting up python2.7 (2.7.12-1ubuntu0~16.04.4) ... build 26-Feb-2019 10:48:22 Setting up libpython-stdlib:amd64 (2.7.12-1~16.04) ... build 26-Feb-2019 10:48:22 Setting up python (2.7.12-1~16.04) ... build 26-Feb-2019 10:48:23 Setting up openssl (1.0.2g-1ubuntu4.14) ... build 26-Feb-2019 10:48:23 Setting up ca-certificates (20170717~16.04.2) ... build 26-Feb-2019 10:48:23 debconf: unable to initialize frontend: Dialog build 26-Feb-2019 10:48:23 debconf: (TERM is not set, so the dialog frontend is not usable.) build 26-Feb-2019 10:48:23 debconf: falling back to frontend: Readline build 26-Feb-2019 10:48:23 debconf: unable to initialize frontend: Readline build 26-Feb-2019 10:48:23 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) build 26-Feb-2019 10:48:23 debconf: falling back to frontend: Teletype build 26-Feb-2019 10:48:24 Setting up python-pip-whl (8.1.1-2ubuntu0.4) ... build 26-Feb-2019 10:48:24 Setting up python-pip (8.1.1-2ubuntu0.4) ... build 26-Feb-2019 10:48:25 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 26-Feb-2019 10:48:25 Processing triggers for ca-certificates (20170717~16.04.2) ... build 26-Feb-2019 10:48:25 Updating certificates in /etc/ssl/certs... build 26-Feb-2019 10:48:27 148 added, 0 removed; done. build 26-Feb-2019 10:48:27 Running hooks in /etc/ca-certificates/update.d... build 26-Feb-2019 10:48:27 done. build 26-Feb-2019 10:48:28 Collecting setuptools build 26-Feb-2019 10:48:28 Downloading https://files.pythonhosted.org/packages/d1/6a/4b2fcefd2ea0868810e92d519dacac1ddc64a2e53ba9e3422c3b62b378a6/setuptools-40.8.0-py2.py3-none-any.whl (575kB) build 26-Feb-2019 10:48:28 Installing collected packages: setuptools build 26-Feb-2019 10:48:28 Successfully installed setuptools-40.8.0 build 26-Feb-2019 10:48:28 You are using pip version 8.1.1, however version 19.0.3 is available. build 26-Feb-2019 10:48:28 You should consider upgrading via the 'pip install --upgrade pip' command. build 26-Feb-2019 10:48:30 Removing intermediate container 14f93b0bea97 build 26-Feb-2019 10:48:30 ---> 0cb16d4f85af build 26-Feb-2019 10:48:30 Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder build 26-Feb-2019 10:48:31 ---> 830fd0a817ec build 26-Feb-2019 10:48:31 Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/ build 26-Feb-2019 10:48:31 ---> 4132efce4458 build 26-Feb-2019 10:48:31 Step 6/9 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder build 26-Feb-2019 10:48:31 ---> Running in cb129ce8359c build 26-Feb-2019 10:48:32 Processing /tmp/pyclowder build 26-Feb-2019 10:48:33 Collecting enum34==1.1.6 (from pyclowder===2.1.1) build 26-Feb-2019 10:48:33 Downloading https://files.pythonhosted.org/packages/c5/db/e56e6b4bbac7c4a06de1c50de6fe1ef3810018ae11732a50f15f62c7d050/enum34-1.1.6-py2-none-any.whl build 26-Feb-2019 10:48:33 Collecting pika==0.11.2 (from pyclowder===2.1.1) build 26-Feb-2019 10:48:33 Downloading https://files.pythonhosted.org/packages/76/b4/0ada6918ac79ce4d8d45d0ba436ee21a1ef685047fb1dde4d2de0178b327/pika-0.11.2-py2.py3-none-any.whl (107kB) build 26-Feb-2019 10:48:33 Collecting PyYAML==3.12 (from pyclowder===2.1.1) build 26-Feb-2019 10:48:33 Downloading https://files.pythonhosted.org/packages/4a/85/db5a2df477072b2902b0eb892feb37d88ac635d36245a72a6a69b23b383a/PyYAML-3.12.tar.gz (253kB) build 26-Feb-2019 10:48:33 Collecting requests==2.18.4 (from pyclowder===2.1.1) build 26-Feb-2019 10:48:33 Downloading https://files.pythonhosted.org/packages/49/df/50aa1999ab9bde74656c2919d9c0c085fd2b3775fd3eca826012bef76d8c/requests-2.18.4-py2.py3-none-any.whl (88kB) build 26-Feb-2019 10:48:33 Collecting certifi>=2017.4.17 (from requests==2.18.4->pyclowder===2.1.1) build 26-Feb-2019 10:48:33 Downloading https://files.pythonhosted.org/packages/9f/e0/accfc1b56b57e9750eba272e24c4dddeac86852c2bebd1236674d7887e8a/certifi-2018.11.29-py2.py3-none-any.whl (154kB) build 26-Feb-2019 10:48:33 Collecting chardet<3.1.0,>=3.0.2 (from requests==2.18.4->pyclowder===2.1.1) build 26-Feb-2019 10:48:33 Downloading https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl (133kB) build 26-Feb-2019 10:48:33 Collecting idna<2.7,>=2.5 (from requests==2.18.4->pyclowder===2.1.1) build 26-Feb-2019 10:48:33 Downloading https://files.pythonhosted.org/packages/27/cc/6dd9a3869f15c2edfab863b992838277279ce92663d334df9ecf5106f5c6/idna-2.6-py2.py3-none-any.whl (56kB) build 26-Feb-2019 10:48:33 Collecting urllib3<1.23,>=1.21.1 (from requests==2.18.4->pyclowder===2.1.1) build 26-Feb-2019 10:48:34 Downloading https://files.pythonhosted.org/packages/63/cb/6965947c13a94236f6d4b8223e21beb4d576dc72e8130bd7880f600839b8/urllib3-1.22-py2.py3-none-any.whl (132kB) build 26-Feb-2019 10:48:34 Building wheels for collected packages: PyYAML build 26-Feb-2019 10:48:34 Running setup.py bdist_wheel for PyYAML: started build 26-Feb-2019 10:48:34 Running setup.py bdist_wheel for PyYAML: finished with status 'error' build 26-Feb-2019 10:48:34 Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-HJ8QkR/PyYAML/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpKAd_f8pip-wheel- --python-tag cp27: build 26-Feb-2019 10:48:34 usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] build 26-Feb-2019 10:48:34 or: -c --help [cmd1 cmd2 ...] build 26-Feb-2019 10:48:34 or: -c --help-commands build 26-Feb-2019 10:48:34 or: -c cmd --help build 26-Feb-2019 10:48:34 build 26-Feb-2019 10:48:34 error: invalid command 'bdist_wheel' build 26-Feb-2019 10:48:34 build 26-Feb-2019 10:48:34 ---------------------------------------- build 26-Feb-2019 10:48:34  Failed building wheel for PyYAML build 26-Feb-2019 10:48:34  Running setup.py clean for PyYAML build 26-Feb-2019 10:48:34 Failed to build PyYAML build 26-Feb-2019 10:48:34 Installing collected packages: enum34, pika, PyYAML, certifi, chardet, idna, urllib3, requests, pyclowder build 26-Feb-2019 10:48:34 Running setup.py install for PyYAML: started build 26-Feb-2019 10:48:34 Running setup.py install for PyYAML: finished with status 'done' build 26-Feb-2019 10:48:34 Running setup.py install for pyclowder: started build 26-Feb-2019 10:48:35 Running setup.py install for pyclowder: finished with status 'done' build 26-Feb-2019 10:48:35 Successfully installed PyYAML-3.12 certifi-2018.11.29 chardet-3.0.4 enum34-1.1.6 idna-2.6 pika-0.11.2 pyclowder-2.1.1 requests-2.18.4 urllib3-1.22 build 26-Feb-2019 10:48:35 You are using pip version 8.1.1, however version 19.0.3 is available. build 26-Feb-2019 10:48:35 You should consider upgrading via the 'pip install --upgrade pip' command. build 26-Feb-2019 10:48:36 Removing intermediate container cb129ce8359c build 26-Feb-2019 10:48:36 ---> 5b80bd24743a build 26-Feb-2019 10:48:36 Step 7/9 : WORKDIR /home/clowder build 26-Feb-2019 10:48:36 ---> Running in 30777e694031 build 26-Feb-2019 10:48:36 Removing intermediate container 30777e694031 build 26-Feb-2019 10:48:36 ---> 887f7eea03be build 26-Feb-2019 10:48:36 Step 8/9 : COPY notifications.json /home/clowder build 26-Feb-2019 10:48:37 ---> b7aea83f36a5 build 26-Feb-2019 10:48:37 Step 9/9 : CMD python "./${MAIN_SCRIPT}" build 26-Feb-2019 10:48:37 ---> Running in ea970fb79b33 build 26-Feb-2019 10:48:38 Removing intermediate container ea970fb79b33 build 26-Feb-2019 10:48:38 ---> 4a022a6ba1f6 build 26-Feb-2019 10:48:38 Successfully built 4a022a6ba1f6 build 26-Feb-2019 10:48:38 Successfully tagged clowder/pyclowder:latest build 26-Feb-2019 10:48:38 Sending build context to Docker daemon 266.2kB build 26-Feb-2019 10:48:38 build 26-Feb-2019 10:48:38 Step 1/6 : FROM clowder/pyclowder build 26-Feb-2019 10:48:38 ---> 4a022a6ba1f6 build 26-Feb-2019 10:48:38 Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 26-Feb-2019 10:48:38 ---> Running in f4309ca41601 build 26-Feb-2019 10:48:39 Removing intermediate container f4309ca41601 build 26-Feb-2019 10:48:39 ---> 176f52709a9c build 26-Feb-2019 10:48:39 Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 26-Feb-2019 10:48:39 ---> Running in fb3d2583cfc1 build 26-Feb-2019 10:48:39 Removing intermediate container fb3d2583cfc1 build 26-Feb-2019 10:48:39 ---> b0fa1abda2bc build 26-Feb-2019 10:48:39 Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 26-Feb-2019 10:48:39 ---> Running in 445e3b1acc8e build 26-Feb-2019 10:48:39 Removing intermediate container 445e3b1acc8e build 26-Feb-2019 10:48:39 ---> b2d8b99c4827 build 26-Feb-2019 10:48:39 Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 26-Feb-2019 10:48:40 ---> Running in a079bbc790ae build 26-Feb-2019 10:48:40 Removing intermediate container a079bbc790ae build 26-Feb-2019 10:48:40 ---> 22265b1f4a89 build 26-Feb-2019 10:48:40 Step 6/6 : ONBUILD ADD . /home/clowder/ build 26-Feb-2019 10:48:40 ---> Running in ff934e19e9c2 build 26-Feb-2019 10:48:40 Removing intermediate container ff934e19e9c2 build 26-Feb-2019 10:48:40 ---> 44b8722e2785 build 26-Feb-2019 10:48:40 Successfully built 44b8722e2785 build 26-Feb-2019 10:48:40 Successfully tagged clowder/pyclowder:onbuild build 26-Feb-2019 10:48:41 Sending build context to Docker daemon 12.8kB build 26-Feb-2019 10:48:41 build 26-Feb-2019 10:48:41 Step 1/5 : FROM clowder/pyclowder:onbuild build 26-Feb-2019 10:48:41 # Executing 5 build triggers build 26-Feb-2019 10:48:41 ---> Running in 1e5b2a58b5d5 build 26-Feb-2019 10:48:43 Removing intermediate container 1e5b2a58b5d5 build 26-Feb-2019 10:48:44 ---> Running in 7903bdbe09e6 build 26-Feb-2019 10:48:45 Removing intermediate container 7903bdbe09e6 build 26-Feb-2019 10:48:45 ---> 15539ef84545 build 26-Feb-2019 10:48:45 Step 2/5 : ENV MAIN_SCRIPT="binary_extractor.py" RABBITMQ_QUEUE="" IMAGE_BINARY="" IMAGE_TYPE="" IMAGE_THUMBNAIL_COMMAND="" IMAGE_PREVIEW_COMMAND="" PREVIEW_BINARY="" PREVIEW_TYPE="" PREVIEW_COMMAND="" build 26-Feb-2019 10:48:45 ---> Running in 0dc991754e5d build 26-Feb-2019 10:48:46 Removing intermediate container 0dc991754e5d build 26-Feb-2019 10:48:46 ---> 01d1b8e27971 build 26-Feb-2019 10:48:46 Step 3/5 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 26-Feb-2019 10:48:46 ---> Running in 4798f9a5cf9d build 26-Feb-2019 10:48:46 Removing intermediate container 4798f9a5cf9d build 26-Feb-2019 10:48:46 ---> bb9a097acb7d build 26-Feb-2019 10:48:46 Step 4/5 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 26-Feb-2019 10:48:46 ---> Running in 937bb1966463 build 26-Feb-2019 10:48:46 Removing intermediate container 937bb1966463 build 26-Feb-2019 10:48:46 ---> 841be5835db7 build 26-Feb-2019 10:48:46 Step 5/5 : ONBUILD COPY extractor_info.json /home/clowder/ build 26-Feb-2019 10:48:47 ---> Running in 56649bb05ec4 build 26-Feb-2019 10:48:47 Removing intermediate container 56649bb05ec4 build 26-Feb-2019 10:48:47 ---> a018d293cee7 build 26-Feb-2019 10:48:47 Successfully built a018d293cee7 build 26-Feb-2019 10:48:48 Successfully tagged clowder/extractors-binary-preview:onbuild build 26-Feb-2019 10:48:48 Sending build context to Docker daemon 6.656kB build 26-Feb-2019 10:48:48 build 26-Feb-2019 10:48:48 Step 1/9 : FROM clowder/pyclowder:onbuild build 26-Feb-2019 10:48:48 # Executing 5 build triggers build 26-Feb-2019 10:48:48 ---> Running in d4070a233557 build 26-Feb-2019 10:48:50 Removing intermediate container d4070a233557 build 26-Feb-2019 10:48:50 ---> Running in 95c42c885456 build 26-Feb-2019 10:48:52 Removing intermediate container 95c42c885456 build 26-Feb-2019 10:48:52 ---> 27c7f794c655 build 26-Feb-2019 10:48:52 Step 2/9 : ENV EXTRACTION_FUNC="" build 26-Feb-2019 10:48:53 ---> Running in 53307f061992 build 26-Feb-2019 10:48:53 Removing intermediate container 53307f061992 build 26-Feb-2019 10:48:53 ---> e20e3221028c build 26-Feb-2019 10:48:53 Step 3/9 : ENV EXTRACTION_MODULE="" build 26-Feb-2019 10:48:53 ---> Running in 872f915b555f build 26-Feb-2019 10:48:54 Removing intermediate container 872f915b555f build 26-Feb-2019 10:48:54 ---> 3d8e2bae6937 build 26-Feb-2019 10:48:54 Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 26-Feb-2019 10:48:54 ---> Running in a8b91bc948f7 build 26-Feb-2019 10:48:54 Removing intermediate container a8b91bc948f7 build 26-Feb-2019 10:48:54 ---> a89a37886536 build 26-Feb-2019 10:48:54 Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 26-Feb-2019 10:48:54 ---> Running in 1c0325729cd6 build 26-Feb-2019 10:48:54 Removing intermediate container 1c0325729cd6 build 26-Feb-2019 10:48:54 ---> 4a85c52b89aa build 26-Feb-2019 10:48:54 Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 26-Feb-2019 10:48:55 ---> Running in bf4a34c49744 build 26-Feb-2019 10:48:55 Removing intermediate container bf4a34c49744 build 26-Feb-2019 10:48:55 ---> 6e77c8448344 build 26-Feb-2019 10:48:55 Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 26-Feb-2019 10:48:55 ---> Running in 507af9588b5d build 26-Feb-2019 10:48:55 Removing intermediate container 507af9588b5d build 26-Feb-2019 10:48:55 ---> f5bc265b788f build 26-Feb-2019 10:48:55 Step 8/9 : ONBUILD ADD . /home/clowder/ build 26-Feb-2019 10:48:56 ---> Running in 85ba226bc394 build 26-Feb-2019 10:48:56 Removing intermediate container 85ba226bc394 build 26-Feb-2019 10:48:56 ---> fb5450a47f29 build 26-Feb-2019 10:48:56 Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" build 26-Feb-2019 10:48:56 ---> Running in 6c6df199469b build 26-Feb-2019 10:48:56 Removing intermediate container 6c6df199469b build 26-Feb-2019 10:48:56 ---> 1f2994287c8e build 26-Feb-2019 10:48:56 Successfully built 1f2994287c8e build 26-Feb-2019 10:48:56 Successfully tagged clowder/extractors-simple-extractor:onbuild build 26-Feb-2019 10:48:56 Sending build context to Docker daemon 13.31kB build 26-Feb-2019 10:48:56 build 26-Feb-2019 10:48:57 Step 1/10 : FROM clowder/pyclowder:latest build 26-Feb-2019 10:48:57 ---> 4a022a6ba1f6 build 26-Feb-2019 10:48:57 Step 2/10 : ENV R_SCRIPT="" R_FUNCTION="" build 26-Feb-2019 10:48:57 ---> Running in a6c011e5e6cb build 26-Feb-2019 10:48:58 Removing intermediate container a6c011e5e6cb build 26-Feb-2019 10:48:58 ---> d3c7d7713554 build 26-Feb-2019 10:48:58 Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" build 26-Feb-2019 10:48:58 ---> Running in c30b3f2c3f01 build 26-Feb-2019 10:48:59 Executing: /tmp/tmp.ILXkgbGCVM/gpg.1.sh --keyserver build 26-Feb-2019 10:48:59 keyserver.ubuntu.com build 26-Feb-2019 10:48:59 --recv build 26-Feb-2019 10:48:59 E084DAB9 build 26-Feb-2019 10:48:59 gpg: requesting key E084DAB9 from hkp server keyserver.ubuntu.com build 26-Feb-2019 10:48:59 gpg: key E084DAB9: public key "Totally Legit Signing Key " imported build 26-Feb-2019 10:48:59 gpg: key E084DAB9: public key "Michael Rutter " imported build 26-Feb-2019 10:48:59 gpg: Total number processed: 2 build 26-Feb-2019 10:48:59 gpg: imported: 2 (RSA: 2) build 26-Feb-2019 10:50:00 Reading package lists... build 26-Feb-2019 10:50:01 Building dependency tree... build 26-Feb-2019 10:50:01 Reading state information... build 26-Feb-2019 10:50:01 The following additional packages will be installed: build 26-Feb-2019 10:50:01 autoconf automake autotools-dev binutils bsdmainutils build-essential bzip2 build 26-Feb-2019 10:50:01 cdbs cpp cpp-5 debhelper dh-strip-nondeterminism dh-translations dpkg-dev build 26-Feb-2019 10:50:01 file fontconfig fontconfig-config fonts-dejavu-core g++ g++-5 gcc gcc-5 build 26-Feb-2019 10:50:01 gettext gettext-base gfortran gfortran-5 groff-base icu-devtools intltool build 26-Feb-2019 10:50:01 intltool-debian libarchive-zip-perl libasan2 libasn1-8-heimdal build 26-Feb-2019 10:50:01 libasprintf0v5 libatomic1 libblas-common libblas-dev libblas3 libbz2-dev build 26-Feb-2019 10:50:01 libc-dev-bin libc6 libc6-dev libcairo2 libcc1-0 libcilkrts5 libcroco3 build 26-Feb-2019 10:50:01 libcurl3 libdatrie1 libdpkg-perl libencode-locale-perl libfile-listing-perl build 26-Feb-2019 10:50:01 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-5-dev build 26-Feb-2019 10:50:01 libgdbm3 libgfortran-5-dev libgfortran3 libglib2.0-0 libgmp10 libgnutls30 build 26-Feb-2019 10:50:01 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b build 26-Feb-2019 10:50:01 libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 build 26-Feb-2019 10:50:01 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl build 26-Feb-2019 10:50:01 libhttp-cookies-perl libhttp-date-perl libhttp-message-perl build 26-Feb-2019 10:50:01 libhttp-negotiate-perl libhx509-5-heimdal libice6 libicu-dev libicu55 build 26-Feb-2019 10:50:01 libidn11 libio-html-perl libio-socket-ssl-perl libisl15 libitm1 libjbig0 build 26-Feb-2019 10:50:01 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev build 26-Feb-2019 10:50:01 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 build 26-Feb-2019 10:50:01 liblapack-dev liblapack3 libldap-2.4-2 liblsan0 liblwp-mediatypes-perl build 26-Feb-2019 10:50:01 liblwp-protocol-https-perl liblzma-dev libmagic1 libmpc3 libmpfr4 libmpx0 build 26-Feb-2019 10:50:01 libncurses5-dev libnet-http-perl libnet-ssleay-perl libnettle6 libp11-kit0 build 26-Feb-2019 10:50:01 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils build 26-Feb-2019 10:50:01 libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.22 build 26-Feb-2019 10:50:01 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libquadmath0 build 26-Feb-2019 10:50:01 libreadline-dev libreadline6-dev libroken18-heimdal librtmp1 libsasl2-2 build 26-Feb-2019 10:50:01 libsasl2-modules-db libsigsegv2 libsm6 libstdc++-5-dev libtasn1-6 libtcl8.6 build 26-Feb-2019 10:50:01 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 build 26-Feb-2019 10:50:01 libtsan0 libubsan0 libunistring0 liburi-perl libwind0-heimdal libwww-perl build 26-Feb-2019 10:50:01 libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 build 26-Feb-2019 10:50:01 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 build 26-Feb-2019 10:50:01 libxmuu1 libxrender1 libxss1 libxt6 linux-libc-dev m4 make man-db netbase build 26-Feb-2019 10:50:01 patch perl perl-modules-5.22 pkg-config po-debconf python-pkg-resources build 26-Feb-2019 10:50:01 python-scour python-six tzdata ucf unzip x11-common xauth xdg-utils xz-utils build 26-Feb-2019 10:50:01 zip zlib1g-dev build 26-Feb-2019 10:50:01 Suggested packages: build 26-Feb-2019 10:50:01 autoconf-archive gnu-standards autoconf-doc libtool binutils-doc wamerican build 26-Feb-2019 10:50:01 | wordlist whois vacation bzip2-doc devscripts cpp-doc gcc-5-locales dh-make build 26-Feb-2019 10:50:01 debian-keyring g++-multilib g++-5-multilib gcc-5-doc libstdc++6-5-dbg build 26-Feb-2019 10:50:01 gcc-multilib manpages-dev flex bison gdb gcc-doc gcc-5-multilib libgcc1-dbg build 26-Feb-2019 10:50:01 libgomp1-dbg libitm1-dbg libatomic1-dbg libasan2-dbg liblsan0-dbg build 26-Feb-2019 10:50:01 libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx0-dbg libquadmath0-dbg build 26-Feb-2019 10:50:01 gettext-doc autopoint gfortran-multilib gfortran-doc gfortran-5-multilib build 26-Feb-2019 10:50:01 gfortran-5-doc libgfortran3-dbg groff liblapack-doc-man liblapack-doc build 26-Feb-2019 10:50:01 glibc-doc locales gnutls-bin krb5-doc krb5-user libdata-dump-perl icu-doc build 26-Feb-2019 10:50:01 libcrypt-ssleay-perl liblzma-doc ncurses-doc readline-doc libstdc++-5-doc build 26-Feb-2019 10:50:01 tcl8.6 tk8.6 libauthen-ntlm-perl make-doc less www-browser ed diffutils-doc build 26-Feb-2019 10:50:01 perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl build 26-Feb-2019 10:50:01 libmail-box-perl python-setuptools python-rsvg python-cairo ess r-doc-info build 26-Feb-2019 10:50:01 | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base build 26-Feb-2019 10:50:01 texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra build 26-Feb-2019 10:50:01 texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo build 26-Feb-2019 10:50:01 gvfs-bin build 26-Feb-2019 10:50:01 Recommended packages: build 26-Feb-2019 10:50:01 fakeroot libalgorithm-merge-perl curl | wget | lynx-cur libasprintf-dev build 26-Feb-2019 10:50:01 libgettextpo-dev bzip2-doc manpages manpages-dev libfile-fcntllock-perl build 26-Feb-2019 10:50:01 libglib2.0-data shared-mime-info xdg-user-dirs libhtml-format-perl build 26-Feb-2019 10:50:01 krb5-locales libsasl2-modules libhtml-form-perl libhttp-daemon-perl build 26-Feb-2019 10:50:01 libmailtools-perl xml-core ifupdown rename libmail-sendmail-perl build 26-Feb-2019 10:50:01 r-recommended r-doc-html libfile-mimeinfo-perl libnet-dbus-perl build 26-Feb-2019 10:50:01 libx11-protocol-perl x11-utils x11-xserver-utils build 26-Feb-2019 10:50:01 The following NEW packages will be installed: build 26-Feb-2019 10:50:01 autoconf automake autotools-dev binutils bsdmainutils build-essential bzip2 build 26-Feb-2019 10:50:01 cdbs cpp cpp-5 debhelper dh-strip-nondeterminism dh-translations dpkg-dev build 26-Feb-2019 10:50:01 file fontconfig fontconfig-config fonts-dejavu-core g++ g++-5 gcc gcc-5 build 26-Feb-2019 10:50:01 gettext gettext-base gfortran gfortran-5 groff-base icu-devtools intltool build 26-Feb-2019 10:50:01 intltool-debian libarchive-zip-perl libasan2 libasn1-8-heimdal build 26-Feb-2019 10:50:01 libasprintf0v5 libatomic1 libblas-common libblas-dev libblas3 libbz2-dev build 26-Feb-2019 10:50:01 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcroco3 libcurl3 build 26-Feb-2019 10:50:01 libdatrie1 libdpkg-perl libencode-locale-perl libfile-listing-perl build 26-Feb-2019 10:50:01 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-5-dev build 26-Feb-2019 10:50:01 libgdbm3 libgfortran-5-dev libgfortran3 libglib2.0-0 libgmp10 libgnutls30 build 26-Feb-2019 10:50:01 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b build 26-Feb-2019 10:50:01 libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 build 26-Feb-2019 10:50:01 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl build 26-Feb-2019 10:50:01 libhttp-cookies-perl libhttp-date-perl libhttp-message-perl build 26-Feb-2019 10:50:01 libhttp-negotiate-perl libhx509-5-heimdal libice6 libicu-dev libicu55 build 26-Feb-2019 10:50:01 libidn11 libio-html-perl libio-socket-ssl-perl libisl15 libitm1 libjbig0 build 26-Feb-2019 10:50:01 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev build 26-Feb-2019 10:50:01 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 build 26-Feb-2019 10:50:01 liblapack-dev liblapack3 libldap-2.4-2 liblsan0 liblwp-mediatypes-perl build 26-Feb-2019 10:50:01 liblwp-protocol-https-perl liblzma-dev libmagic1 libmpc3 libmpfr4 libmpx0 build 26-Feb-2019 10:50:01 libncurses5-dev libnet-http-perl libnet-ssleay-perl libnettle6 libp11-kit0 build 26-Feb-2019 10:50:01 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils build 26-Feb-2019 10:50:01 libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.22 build 26-Feb-2019 10:50:01 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libquadmath0 build 26-Feb-2019 10:50:01 libreadline-dev libreadline6-dev libroken18-heimdal librtmp1 libsasl2-2 build 26-Feb-2019 10:50:01 libsasl2-modules-db libsigsegv2 libsm6 libstdc++-5-dev libtasn1-6 libtcl8.6 build 26-Feb-2019 10:50:01 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 build 26-Feb-2019 10:50:01 libtsan0 libubsan0 libunistring0 liburi-perl libwind0-heimdal libwww-perl build 26-Feb-2019 10:50:01 libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 build 26-Feb-2019 10:50:01 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 build 26-Feb-2019 10:50:01 libxmuu1 libxrender1 libxss1 libxt6 linux-libc-dev m4 make man-db netbase build 26-Feb-2019 10:50:01 patch perl perl-modules-5.22 pkg-config po-debconf python-pkg-resources build 26-Feb-2019 10:50:01 python-scour python-six r-base-core r-base-dev tzdata ucf unzip x11-common build 26-Feb-2019 10:50:01 xauth xdg-utils xz-utils zip zlib1g-dev build 26-Feb-2019 10:50:01 The following packages will be upgraded: build 26-Feb-2019 10:50:01 libc6 build 26-Feb-2019 10:50:01 1 upgraded, 190 newly installed, 0 to remove and 8 not upgraded. build 26-Feb-2019 10:50:01 Need to get 119 MB of archives. build 26-Feb-2019 10:50:01 After this operation, 416 MB of additional disk space will be used. build 26-Feb-2019 10:50:01 Get:1 http://cran.rstudio.com/bin/linux/ubuntu xenial/ r-base-core 3.4.4-1xenial0 [23.2 MB] build 26-Feb-2019 10:50:01 Get:2 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc6 amd64 2.23-0ubuntu11 [2577 kB] build 26-Feb-2019 10:50:02 Get:3 http://cran.rstudio.com/bin/linux/ubuntu xenial/ r-base-dev 3.4.4-1xenial0 [4416 B] build 26-Feb-2019 10:50:05 Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgdbm3 amd64 1.8.3-13.1 [16.9 kB] build 26-Feb-2019 10:50:05 Get:5 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libglib2.0-0 amd64 2.48.2-0ubuntu4.1 [1120 kB] build 26-Feb-2019 10:50:07 Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] build 26-Feb-2019 10:50:07 Get:7 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxdmcp6 amd64 1:1.1.2-1.1 [11.0 kB] build 26-Feb-2019 10:50:07 Get:8 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb1 amd64 1.11.1-1ubuntu1 [40.0 kB] build 26-Feb-2019 10:50:07 Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-data all 2:1.6.3-1ubuntu2.1 [113 kB] build 26-Feb-2019 10:50:07 Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-6 amd64 2:1.6.3-1ubuntu2.1 [570 kB] build 26-Feb-2019 10:50:08 Get:11 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB] build 26-Feb-2019 10:50:08 Get:12 http://archive.ubuntu.com/ubuntu xenial/main amd64 groff-base amd64 1.22.3-7 [1151 kB] build 26-Feb-2019 10:50:09 Get:13 http://archive.ubuntu.com/ubuntu xenial/main amd64 bsdmainutils amd64 9.0.6ubuntu3 [174 kB] build 26-Feb-2019 10:50:09 Get:14 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpipeline1 amd64 1.4.1-2 [24.6 kB] build 26-Feb-2019 10:50:09 Get:15 http://archive.ubuntu.com/ubuntu xenial/main amd64 man-db amd64 2.7.5-1 [854 kB] build 26-Feb-2019 10:50:10 Get:16 http://archive.ubuntu.com/ubuntu xenial/main amd64 fonts-dejavu-core all 2.35-1 [1039 kB] build 26-Feb-2019 10:50:12 Get:17 http://archive.ubuntu.com/ubuntu xenial/main amd64 ucf all 3.0036 [52.9 kB] build 26-Feb-2019 10:50:13 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 fontconfig-config all 2.11.94-0ubuntu1.1 [49.9 kB] build 26-Feb-2019 10:50:13 Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpng12-0 amd64 1.2.54-1ubuntu1.1 [116 kB] build 26-Feb-2019 10:50:13 Get:20 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfreetype6 amd64 2.6.1-0.1ubuntu2.3 [316 kB] build 26-Feb-2019 10:50:14 Get:21 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfontconfig1 amd64 2.11.94-0ubuntu1.1 [131 kB] build 26-Feb-2019 10:50:14 Get:22 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 fontconfig amd64 2.11.94-0ubuntu1.1 [178 kB] build 26-Feb-2019 10:50:14 Get:23 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 x11-common all 1:7.7+13ubuntu3.1 [22.9 kB] build 26-Feb-2019 10:50:14 Get:24 http://archive.ubuntu.com/ubuntu xenial/main amd64 libice6 amd64 2:1.0.9-1 [39.2 kB] build 26-Feb-2019 10:50:14 Get:25 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libjpeg-turbo8 amd64 1.4.2-0ubuntu3.1 [111 kB] build 26-Feb-2019 10:50:15 Get:26 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpcrecpp0v5 amd64 2:8.38-3.1 [15.2 kB] build 26-Feb-2019 10:50:15 Get:27 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsigsegv2 amd64 2.10-4 [14.1 kB] build 26-Feb-2019 10:50:15 Get:28 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB] build 26-Feb-2019 10:50:15 Get:29 http://archive.ubuntu.com/ubuntu xenial/main amd64 libunistring0 amd64 0.9.3-5.2ubuntu1 [279 kB] build 26-Feb-2019 10:50:15 Get:30 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxrender1 amd64 1:0.9.9-0ubuntu1 [18.5 kB] build 26-Feb-2019 10:50:16 Get:31 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxft2 amd64 2.3.2-1 [36.1 kB] build 26-Feb-2019 10:50:16 Get:32 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxss1 amd64 1:1.2.2-1 [8582 B] build 26-Feb-2019 10:50:16 Get:33 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 perl-modules-5.22 all 5.22.1-9ubuntu0.6 [2629 kB] build 26-Feb-2019 10:50:26 Get:34 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libperl5.22 amd64 5.22.1-9ubuntu0.6 [3405 kB] build 26-Feb-2019 10:50:43 Get:35 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 perl amd64 5.22.1-9ubuntu0.6 [237 kB] build 26-Feb-2019 10:50:50 Get:35 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 perl amd64 5.22.1-9ubuntu0.6 [237 kB] build 26-Feb-2019 10:50:51 Get:36 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjbig0 amd64 2.1-3.1 [26.6 kB] build 26-Feb-2019 10:50:51 Get:37 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgmp10 amd64 2:6.1.0+dfsg-2 [240 kB] build 26-Feb-2019 10:50:51 Get:38 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpfr4 amd64 3.1.4-1 [191 kB] build 26-Feb-2019 10:50:52 Get:39 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpc3 amd64 1.0.3-1 [39.7 kB] build 26-Feb-2019 10:50:52 Get:40 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 tzdata all 2018i-0ubuntu0.16.04 [168 kB] build 26-Feb-2019 10:50:52 Get:41 http://archive.ubuntu.com/ubuntu xenial/main amd64 bzip2 amd64 1.0.6-8 [32.7 kB] build 26-Feb-2019 10:50:52 Get:42 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmagic1 amd64 1:5.25-2ubuntu1.1 [216 kB] build 26-Feb-2019 10:50:52 Get:43 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 file amd64 1:5.25-2ubuntu1.1 [21.2 kB] build 26-Feb-2019 10:50:52 Get:44 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libnettle6 amd64 3.2-1ubuntu0.16.04.1 [93.5 kB] build 26-Feb-2019 10:50:52 Get:45 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhogweed4 amd64 3.2-1ubuntu0.16.04.1 [136 kB] build 26-Feb-2019 10:50:52 Get:46 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libidn11 amd64 1.32-3ubuntu1.2 [46.5 kB] build 26-Feb-2019 10:50:52 Get:47 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libp11-kit0 amd64 0.23.2-5~ubuntu16.04.1 [105 kB] build 26-Feb-2019 10:50:52 Get:48 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtasn1-6 amd64 4.7-3ubuntu0.16.04.3 [43.5 kB] build 26-Feb-2019 10:50:53 Get:49 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgnutls30 amd64 3.4.10-4ubuntu1.4 [548 kB] build 26-Feb-2019 10:50:53 Get:50 http://archive.ubuntu.com/ubuntu xenial/main amd64 netbase all 5.3 [12.9 kB] build 26-Feb-2019 10:50:53 Get:51 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasprintf0v5 amd64 0.19.7-2ubuntu3.1 [6568 B] build 26-Feb-2019 10:50:53 Get:52 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gettext-base amd64 0.19.7-2ubuntu3.1 [48.0 kB] build 26-Feb-2019 10:50:53 Get:53 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libroken18-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [41.4 kB] build 26-Feb-2019 10:50:53 Get:54 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasn1-8-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [174 kB] build 26-Feb-2019 10:50:54 Get:55 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5support0 amd64 1.13.2+dfsg-5ubuntu2.1 [31.2 kB] build 26-Feb-2019 10:50:54 Get:56 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libk5crypto3 amd64 1.13.2+dfsg-5ubuntu2.1 [81.3 kB] build 26-Feb-2019 10:50:54 Get:57 http://archive.ubuntu.com/ubuntu xenial/main amd64 libkeyutils1 amd64 1.5.9-8ubuntu1 [9904 B] build 26-Feb-2019 10:50:54 Get:58 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5-3 amd64 1.13.2+dfsg-5ubuntu2.1 [273 kB] build 26-Feb-2019 10:50:54 Get:59 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgssapi-krb5-2 amd64 1.13.2+dfsg-5ubuntu2.1 [120 kB] build 26-Feb-2019 10:50:54 Get:60 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhcrypto4-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [85.0 kB] build 26-Feb-2019 10:50:54 Get:61 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libheimbase1-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [29.3 kB] build 26-Feb-2019 10:50:54 Get:62 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libwind0-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [47.8 kB] build 26-Feb-2019 10:50:54 Get:63 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhx509-5-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [107 kB] build 26-Feb-2019 10:50:55 Get:64 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5-26-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [202 kB] build 26-Feb-2019 10:50:55 Get:65 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libheimntlm0-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [15.1 kB] build 26-Feb-2019 10:50:55 Get:66 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgssapi3-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [96.1 kB] build 26-Feb-2019 10:50:55 Get:67 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libicu55 amd64 55.1-7ubuntu0.4 [7646 kB] build 26-Feb-2019 10:51:18 Get:68 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libsasl2-modules-db amd64 2.1.26.dfsg1-14ubuntu0.1 [14.5 kB] build 26-Feb-2019 10:51:18 Get:69 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libsasl2-2 amd64 2.1.26.dfsg1-14ubuntu0.1 [48.6 kB] build 26-Feb-2019 10:51:18 Get:70 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libldap-2.4-2 amd64 2.4.42+dfsg-2ubuntu3.4 [160 kB] build 26-Feb-2019 10:51:19 Get:71 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d-1ubuntu0.1 [54.4 kB] build 26-Feb-2019 10:51:19 Get:72 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libxml2 amd64 2.9.3+dfsg1-1ubuntu0.6 [697 kB] build 26-Feb-2019 10:51:22 Get:73 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxmuu1 amd64 2:1.1.2-2 [9674 B] build 26-Feb-2019 10:51:22 Get:74 http://archive.ubuntu.com/ubuntu xenial/main amd64 xauth amd64 1:1.0.9-1ubuntu2 [22.7 kB] build 26-Feb-2019 10:51:22 Get:75 http://archive.ubuntu.com/ubuntu xenial/main amd64 m4 amd64 1.4.17-5 [195 kB] build 26-Feb-2019 10:51:23 Get:76 http://archive.ubuntu.com/ubuntu xenial/main amd64 autoconf all 2.69-9 [321 kB] build 26-Feb-2019 10:51:24 Get:77 http://archive.ubuntu.com/ubuntu xenial/main amd64 autotools-dev all 20150820.1 [39.8 kB] build 26-Feb-2019 10:51:24 Get:78 http://archive.ubuntu.com/ubuntu xenial/main amd64 automake all 1:1.15-4ubuntu1 [510 kB] build 26-Feb-2019 10:51:26 Get:79 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 binutils amd64 2.26.1-1ubuntu1~16.04.8 [2312 kB] build 26-Feb-2019 10:51:35 Get:80 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc-dev-bin amd64 2.23-0ubuntu11 [68.5 kB] build 26-Feb-2019 10:51:36 Get:81 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 linux-libc-dev amd64 4.4.0-142.168 [867 kB] build 26-Feb-2019 10:51:40 Get:82 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc6-dev amd64 2.23-0ubuntu11 [2086 kB] build 26-Feb-2019 10:51:48 Get:83 http://archive.ubuntu.com/ubuntu xenial/main amd64 libisl15 amd64 0.16.1-1 [524 kB] build 26-Feb-2019 10:51:50 Get:84 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 cpp-5 amd64 5.4.0-6ubuntu1~16.04.11 [7660 kB] build 26-Feb-2019 10:52:18 Get:85 http://archive.ubuntu.com/ubuntu xenial/main amd64 cpp amd64 4:5.3.1-1ubuntu1 [27.7 kB] build 26-Feb-2019 10:52:18 Get:86 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcc1-0 amd64 5.4.0-6ubuntu1~16.04.11 [38.8 kB] build 26-Feb-2019 10:52:18 Get:87 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgomp1 amd64 5.4.0-6ubuntu1~16.04.11 [55.0 kB] build 26-Feb-2019 10:52:18 Get:88 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libitm1 amd64 5.4.0-6ubuntu1~16.04.11 [27.4 kB] build 26-Feb-2019 10:52:18 Get:89 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libatomic1 amd64 5.4.0-6ubuntu1~16.04.11 [8896 B] build 26-Feb-2019 10:52:18 Get:90 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasan2 amd64 5.4.0-6ubuntu1~16.04.11 [264 kB] build 26-Feb-2019 10:52:19 Get:91 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 liblsan0 amd64 5.4.0-6ubuntu1~16.04.11 [105 kB] build 26-Feb-2019 10:52:20 Get:92 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtsan0 amd64 5.4.0-6ubuntu1~16.04.11 [244 kB] build 26-Feb-2019 10:52:20 Get:93 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libubsan0 amd64 5.4.0-6ubuntu1~16.04.11 [95.4 kB] build 26-Feb-2019 10:52:21 Get:94 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcilkrts5 amd64 5.4.0-6ubuntu1~16.04.11 [40.1 kB] build 26-Feb-2019 10:52:21 Get:95 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmpx0 amd64 5.4.0-6ubuntu1~16.04.11 [9748 B] build 26-Feb-2019 10:52:21 Get:96 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libquadmath0 amd64 5.4.0-6ubuntu1~16.04.11 [131 kB] build 26-Feb-2019 10:52:21 Get:97 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgcc-5-dev amd64 5.4.0-6ubuntu1~16.04.11 [2229 kB] build 26-Feb-2019 10:52:30 Get:98 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gcc-5 amd64 5.4.0-6ubuntu1~16.04.11 [8417 kB] build 26-Feb-2019 10:53:01 Get:99 http://archive.ubuntu.com/ubuntu xenial/main amd64 gcc amd64 4:5.3.1-1ubuntu1 [5244 B] build 26-Feb-2019 10:53:01 Get:100 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libstdc++-5-dev amd64 5.4.0-6ubuntu1~16.04.11 [1426 kB] build 26-Feb-2019 10:53:06 Get:101 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 g++-5 amd64 5.4.0-6ubuntu1~16.04.11 [8310 kB] build 26-Feb-2019 10:53:35 Get:102 http://archive.ubuntu.com/ubuntu xenial/main amd64 g++ amd64 4:5.3.1-1ubuntu1 [1504 B] build 26-Feb-2019 10:53:35 Get:103 http://archive.ubuntu.com/ubuntu xenial/main amd64 make amd64 4.1-6 [151 kB] build 26-Feb-2019 10:53:36 Get:104 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdpkg-perl all 1.18.4ubuntu1.5 [195 kB] build 26-Feb-2019 10:53:37 Get:105 http://archive.ubuntu.com/ubuntu xenial/main amd64 xz-utils amd64 5.1.1alpha+20120614-2ubuntu2 [78.8 kB] build 26-Feb-2019 10:53:37 Get:106 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 patch amd64 2.7.5-1ubuntu0.16.04.1 [90.5 kB] build 26-Feb-2019 10:53:37 Get:107 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 dpkg-dev all 1.18.4ubuntu1.5 [584 kB] build 26-Feb-2019 10:53:39 Get:108 http://archive.ubuntu.com/ubuntu xenial/main amd64 build-essential amd64 12.1ubuntu2 [4758 B] build 26-Feb-2019 10:53:39 Get:109 http://archive.ubuntu.com/ubuntu xenial/main amd64 libcroco3 amd64 0.6.11-1 [81.6 kB] build 26-Feb-2019 10:53:40 Get:110 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gettext amd64 0.19.7-2ubuntu3.1 [1082 kB] build 26-Feb-2019 10:53:44 Get:111 http://archive.ubuntu.com/ubuntu xenial/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] build 26-Feb-2019 10:53:45 Get:112 http://archive.ubuntu.com/ubuntu xenial/main amd64 po-debconf all 1.0.19 [234 kB] build 26-Feb-2019 10:53:45 Get:113 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libarchive-zip-perl all 1.56-2ubuntu0.1 [84.7 kB] build 26-Feb-2019 10:53:46 Get:114 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfile-stripnondeterminism-perl all 0.015-1 [10.3 kB] build 26-Feb-2019 10:53:46 Get:115 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] build 26-Feb-2019 10:53:46 Get:116 http://archive.ubuntu.com/ubuntu xenial/main amd64 dh-strip-nondeterminism all 0.015-1 [4864 B] build 26-Feb-2019 10:53:46 Get:117 http://archive.ubuntu.com/ubuntu xenial/main amd64 debhelper all 9.20160115ubuntu3 [739 kB] build 26-Feb-2019 10:53:48 Get:118 http://archive.ubuntu.com/ubuntu xenial/main amd64 liburi-perl all 1.71-1 [76.9 kB] build 26-Feb-2019 10:53:48 Get:119 http://archive.ubuntu.com/ubuntu xenial/main amd64 libencode-locale-perl all 1.05-1 [12.3 kB] build 26-Feb-2019 10:53:48 Get:120 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-date-perl all 6.02-1 [10.4 kB] build 26-Feb-2019 10:53:48 Get:121 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfile-listing-perl all 6.04-1 [9774 B] build 26-Feb-2019 10:53:48 Get:122 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhtml-tagset-perl all 3.20-2 [13.5 kB] build 26-Feb-2019 10:53:48 Get:123 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhtml-parser-perl amd64 3.72-1 [86.1 kB] build 26-Feb-2019 10:53:48 Get:124 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhtml-tree-perl all 5.03-2 [197 kB] build 26-Feb-2019 10:53:49 Get:125 http://archive.ubuntu.com/ubuntu xenial/main amd64 libio-html-perl all 1.001-1 [14.9 kB] build 26-Feb-2019 10:53:49 Get:126 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblwp-mediatypes-perl all 6.02-1 [21.7 kB] build 26-Feb-2019 10:53:49 Get:127 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-message-perl all 6.11-1 [74.3 kB] build 26-Feb-2019 10:53:49 Get:128 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-cookies-perl all 6.01-1 [17.2 kB] build 26-Feb-2019 10:53:49 Get:129 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-negotiate-perl all 6.00-2 [13.4 kB] build 26-Feb-2019 10:53:49 Get:130 http://archive.ubuntu.com/ubuntu xenial/main amd64 libnet-ssleay-perl amd64 1.72-1build1 [259 kB] build 26-Feb-2019 10:53:50 Get:131 http://archive.ubuntu.com/ubuntu xenial/main amd64 libio-socket-ssl-perl all 2.024-1 [159 kB] build 26-Feb-2019 10:53:51 Get:132 http://archive.ubuntu.com/ubuntu xenial/main amd64 libnet-http-perl all 6.09-1 [24.0 kB] build 26-Feb-2019 10:53:51 Get:133 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblwp-protocol-https-perl all 6.06-2 [8682 B] build 26-Feb-2019 10:53:51 Get:134 http://archive.ubuntu.com/ubuntu xenial/main amd64 libwww-robotrules-perl all 6.01-1 [14.1 kB] build 26-Feb-2019 10:53:51 Get:135 http://archive.ubuntu.com/ubuntu xenial/main amd64 libwww-perl all 6.15-1 [146 kB] build 26-Feb-2019 10:53:52 Get:136 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxml-parser-perl amd64 2.44-1build1 [200 kB] build 26-Feb-2019 10:53:52 Get:137 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 intltool all 0.51.0-2ubuntu1.16.04.1 [45.0 kB] build 26-Feb-2019 10:53:53 Get:138 http://archive.ubuntu.com/ubuntu xenial/main amd64 dh-translations all 129 [22.1 kB] build 26-Feb-2019 10:53:53 Get:139 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-six all 1.10.0-3 [10.9 kB] build 26-Feb-2019 10:53:53 Get:140 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-pkg-resources all 20.7.0-1 [108 kB] build 26-Feb-2019 10:53:53 Get:141 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-scour all 0.32-1 [42.7 kB] build 26-Feb-2019 10:53:53 Get:142 http://archive.ubuntu.com/ubuntu xenial/main amd64 cdbs all 0.4.130ubuntu2 [42.8 kB] build 26-Feb-2019 10:53:53 Get:143 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran3 amd64 5.4.0-6ubuntu1~16.04.11 [260 kB] build 26-Feb-2019 10:53:53 Get:144 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran-5-dev amd64 5.4.0-6ubuntu1~16.04.11 [291 kB] build 26-Feb-2019 10:53:54 Get:145 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gfortran-5 amd64 5.4.0-6ubuntu1~16.04.11 [8034 kB] build 26-Feb-2019 10:54:05 Get:146 http://archive.ubuntu.com/ubuntu xenial/main amd64 gfortran amd64 4:5.3.1-1ubuntu1 [1288 B] build 26-Feb-2019 10:54:05 Get:147 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 icu-devtools amd64 55.1-7ubuntu0.4 [166 kB] build 26-Feb-2019 10:54:06 Get:148 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas-common amd64 3.6.0-2ubuntu2 [5342 B] build 26-Feb-2019 10:54:06 Get:149 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas3 amd64 3.6.0-2ubuntu2 [147 kB] build 26-Feb-2019 10:54:06 Get:150 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas-dev amd64 3.6.0-2ubuntu2 [153 kB] build 26-Feb-2019 10:54:06 Get:151 http://archive.ubuntu.com/ubuntu xenial/main amd64 libbz2-dev amd64 1.0.6-8 [29.1 kB] build 26-Feb-2019 10:54:06 Get:152 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpixman-1-0 amd64 0.33.6-1 [231 kB] build 26-Feb-2019 10:54:07 Get:153 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-render0 amd64 1.11.1-1ubuntu1 [11.4 kB] build 26-Feb-2019 10:54:07 Get:154 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-shm0 amd64 1.11.1-1ubuntu1 [5588 B] build 26-Feb-2019 10:54:07 Get:155 http://archive.ubuntu.com/ubuntu xenial/main amd64 libcairo2 amd64 1.14.6-1 [555 kB] build 26-Feb-2019 10:54:08 Get:156 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcurl3 amd64 7.47.0-1ubuntu2.12 [187 kB] build 26-Feb-2019 10:54:09 Get:157 http://archive.ubuntu.com/ubuntu xenial/main amd64 libdatrie1 amd64 0.2.10-2 [17.3 kB] build 26-Feb-2019 10:54:09 Get:158 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgraphite2-3 amd64 1.3.10-0ubuntu0.16.04.1 [71.7 kB] build 26-Feb-2019 10:54:09 Get:159 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libharfbuzz0b amd64 1.0.1-1ubuntu0.1 [140 kB] build 26-Feb-2019 10:54:09 Get:160 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libicu-dev amd64 55.1-7ubuntu0.4 [8566 kB] build 26-Feb-2019 10:54:36 Get:161 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libjpeg-turbo8-dev amd64 1.4.2-0ubuntu3.1 [254 kB] build 26-Feb-2019 10:54:37 Get:162 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] build 26-Feb-2019 10:54:37 Get:163 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1552 B] build 26-Feb-2019 10:54:37 Get:164 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B] build 26-Feb-2019 10:54:37 Get:165 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblapack3 amd64 3.6.0-2ubuntu2 [1938 kB] build 26-Feb-2019 10:54:47 Get:166 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblapack-dev amd64 3.6.0-2ubuntu2 [1948 kB] build 26-Feb-2019 10:54:54 Get:167 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtinfo-dev amd64 6.0+20160213-1ubuntu1 [77.4 kB] build 26-Feb-2019 10:54:54 Get:168 http://archive.ubuntu.com/ubuntu xenial/main amd64 libncurses5-dev amd64 6.0+20160213-1ubuntu1 [175 kB] build 26-Feb-2019 10:54:55 Get:169 http://archive.ubuntu.com/ubuntu xenial/main amd64 libthai-data all 0.1.24-2 [131 kB] build 26-Feb-2019 10:54:55 Get:170 http://archive.ubuntu.com/ubuntu xenial/main amd64 libthai0 amd64 0.1.24-2 [17.3 kB] build 26-Feb-2019 10:54:55 Get:171 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpango-1.0-0 amd64 1.38.1-1 [148 kB] build 26-Feb-2019 10:54:55 Get:172 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpangoft2-1.0-0 amd64 1.38.1-1 [33.3 kB] build 26-Feb-2019 10:54:56 Get:173 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpangocairo-1.0-0 amd64 1.38.1-1 [20.5 kB] build 26-Feb-2019 10:54:56 Get:174 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpaper1 amd64 1.1.24+nmu4ubuntu1 [13.7 kB] build 26-Feb-2019 10:54:56 Get:175 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpaper-utils amd64 1.1.24+nmu4ubuntu1 [8276 B] build 26-Feb-2019 10:54:56 Get:176 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpcre16-3 amd64 2:8.38-3.1 [144 kB] build 26-Feb-2019 10:54:57 Get:177 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpcre32-3 amd64 2:8.38-3.1 [136 kB] build 26-Feb-2019 10:54:57 Get:178 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpcre3-dev amd64 2:8.38-3.1 [525 kB] build 26-Feb-2019 10:54:58 Get:179 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-2ubuntu4.1 [168 kB] build 26-Feb-2019 10:54:59 Get:180 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpng12-dev amd64 1.2.54-1ubuntu1.1 [183 kB] build 26-Feb-2019 10:54:59 Get:181 http://archive.ubuntu.com/ubuntu xenial/main amd64 libreadline6-dev amd64 6.3-8ubuntu2 [124 kB] build 26-Feb-2019 10:55:00 Get:182 http://archive.ubuntu.com/ubuntu xenial/main amd64 libreadline-dev amd64 6.3-8ubuntu2 [992 B] build 26-Feb-2019 10:55:00 Get:183 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtcl8.6 amd64 8.6.5+dfsg-2 [875 kB] build 26-Feb-2019 10:55:02 Get:184 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtiff5 amd64 4.0.6-1ubuntu0.5 [149 kB] build 26-Feb-2019 10:55:03 Get:185 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtk8.6 amd64 8.6.5-1 [693 kB] build 26-Feb-2019 10:55:05 Get:186 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxt6 amd64 1:1.1.5-0ubuntu1 [160 kB] build 26-Feb-2019 10:55:05 Get:187 http://archive.ubuntu.com/ubuntu xenial/main amd64 pkg-config amd64 0.29.1-0ubuntu1 [45.0 kB] build 26-Feb-2019 10:55:05 Get:188 http://archive.ubuntu.com/ubuntu xenial/main amd64 zip amd64 3.0-11 [158 kB] build 26-Feb-2019 10:55:06 Get:189 http://archive.ubuntu.com/ubuntu xenial/main amd64 unzip amd64 6.0-20ubuntu1 [158 kB] build 26-Feb-2019 10:55:06 Get:190 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 xdg-utils all 1.1.1-1ubuntu1.16.04.3 [59.6 kB] build 26-Feb-2019 10:55:06 Get:191 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblzma-dev amd64 5.1.1alpha+20120614-2ubuntu2 [137 kB] build 26-Feb-2019 10:55:07 debconf: delaying package configuration, since apt-utils is not installed build 26-Feb-2019 10:55:07 Fetched 119 MB in 5min 5s (389 kB/s) build 26-Feb-2019 10:55:07 (Reading database ... build 26-Feb-2019 10:55:07 (Reading database ... 5% build 26-Feb-2019 10:55:07 (Reading database ... 10% build 26-Feb-2019 10:55:07 (Reading database ... 15% build 26-Feb-2019 10:55:07 (Reading database ... 20% build 26-Feb-2019 10:55:07 (Reading database ... 25% build 26-Feb-2019 10:55:07 (Reading database ... 30% build 26-Feb-2019 10:55:07 (Reading database ... 35% build 26-Feb-2019 10:55:07 (Reading database ... 40% build 26-Feb-2019 10:55:07 (Reading database ... 45% build 26-Feb-2019 10:55:07 (Reading database ... 50% build 26-Feb-2019 10:55:07 (Reading database ... 55% build 26-Feb-2019 10:55:07 (Reading database ... 60% build 26-Feb-2019 10:55:07 (Reading database ... 65% build 26-Feb-2019 10:55:07 (Reading database ... 70% build 26-Feb-2019 10:55:07 (Reading database ... 75% build 26-Feb-2019 10:55:07 (Reading database ... 80% build 26-Feb-2019 10:55:07 (Reading database ... 85% build 26-Feb-2019 10:55:07 (Reading database ... 90% build 26-Feb-2019 10:55:07 (Reading database ... 95% build 26-Feb-2019 10:55:07 (Reading database ... 100% build 26-Feb-2019 10:55:07 (Reading database ... 6036 files and directories currently installed.) build 26-Feb-2019 10:55:07 Preparing to unpack .../libc6_2.23-0ubuntu11_amd64.deb ... build 26-Feb-2019 10:55:08 debconf: unable to initialize frontend: Dialog build 26-Feb-2019 10:55:08 debconf: (TERM is not set, so the dialog frontend is not usable.) build 26-Feb-2019 10:55:08 debconf: falling back to frontend: Readline build 26-Feb-2019 10:55:08 debconf: unable to initialize frontend: Readline build 26-Feb-2019 10:55:08 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) build 26-Feb-2019 10:55:08 debconf: falling back to frontend: Teletype build 26-Feb-2019 10:55:08 Unpacking libc6:amd64 (2.23-0ubuntu11) over (2.23-0ubuntu10) ... build 26-Feb-2019 10:55:18 Setting up libc6:amd64 (2.23-0ubuntu11) ... build 26-Feb-2019 10:55:18 debconf: unable to initialize frontend: Dialog build 26-Feb-2019 10:55:18 debconf: (TERM is not set, so the dialog frontend is not usable.) build 26-Feb-2019 10:55:18 debconf: falling back to frontend: Readline build 26-Feb-2019 10:55:18 debconf: unable to initialize frontend: Readline build 26-Feb-2019 10:55:18 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) build 26-Feb-2019 10:55:18 debconf: falling back to frontend: Teletype build 26-Feb-2019 10:55:19 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 26-Feb-2019 10:55:20 Selecting previously unselected package libgdbm3:amd64. build 26-Feb-2019 10:55:20 (Reading database ... build 26-Feb-2019 10:55:20 (Reading database ... 5% build 26-Feb-2019 10:55:20 (Reading database ... 10% build 26-Feb-2019 10:55:20 (Reading database ... 15% build 26-Feb-2019 10:55:20 (Reading database ... 20% build 26-Feb-2019 10:55:20 (Reading database ... 25% build 26-Feb-2019 10:55:20 (Reading database ... 30% build 26-Feb-2019 10:55:20 (Reading database ... 35% build 26-Feb-2019 10:55:20 (Reading database ... 40% build 26-Feb-2019 10:55:20 (Reading database ... 45% build 26-Feb-2019 10:55:20 (Reading database ... 50% build 26-Feb-2019 10:55:20 (Reading database ... 55% build 26-Feb-2019 10:55:20 (Reading database ... 60% build 26-Feb-2019 10:55:20 (Reading database ... 65% build 26-Feb-2019 10:55:20 (Reading database ... 70% build 26-Feb-2019 10:55:20 (Reading database ... 75% build 26-Feb-2019 10:55:20 (Reading database ... 80% build 26-Feb-2019 10:55:20 (Reading database ... 85% build 26-Feb-2019 10:55:20 (Reading database ... 90% build 26-Feb-2019 10:55:20 (Reading database ... 95% build 26-Feb-2019 10:55:20 (Reading database ... 100% build 26-Feb-2019 10:55:20 (Reading database ... 6036 files and directories currently installed.) build 26-Feb-2019 10:55:20 Preparing to unpack .../libgdbm3_1.8.3-13.1_amd64.deb ... build 26-Feb-2019 10:55:20 Unpacking libgdbm3:amd64 (1.8.3-13.1) ... build 26-Feb-2019 10:55:21 Selecting previously unselected package libglib2.0-0:amd64. build 26-Feb-2019 10:55:21 Preparing to unpack .../libglib2.0-0_2.48.2-0ubuntu4.1_amd64.deb ... build 26-Feb-2019 10:55:21 Unpacking libglib2.0-0:amd64 (2.48.2-0ubuntu4.1) ... build 26-Feb-2019 10:55:21 Selecting previously unselected package libxau6:amd64. build 26-Feb-2019 10:55:21 Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... build 26-Feb-2019 10:55:21 Unpacking libxau6:amd64 (1:1.0.8-1) ... build 26-Feb-2019 10:55:22 Selecting previously unselected package libxdmcp6:amd64. build 26-Feb-2019 10:55:22 Preparing to unpack .../libxdmcp6_1%3a1.1.2-1.1_amd64.deb ... build 26-Feb-2019 10:55:22 Unpacking libxdmcp6:amd64 (1:1.1.2-1.1) ... build 26-Feb-2019 10:55:22 Selecting previously unselected package libxcb1:amd64. build 26-Feb-2019 10:55:22 Preparing to unpack .../libxcb1_1.11.1-1ubuntu1_amd64.deb ... build 26-Feb-2019 10:55:22 Unpacking libxcb1:amd64 (1.11.1-1ubuntu1) ... build 26-Feb-2019 10:55:22 Selecting previously unselected package libx11-data. build 26-Feb-2019 10:55:22 Preparing to unpack .../libx11-data_2%3a1.6.3-1ubuntu2.1_all.deb ... build 26-Feb-2019 10:55:22 Unpacking libx11-data (2:1.6.3-1ubuntu2.1) ... build 26-Feb-2019 10:55:23 Selecting previously unselected package libx11-6:amd64. build 26-Feb-2019 10:55:23 Preparing to unpack .../libx11-6_2%3a1.6.3-1ubuntu2.1_amd64.deb ... build 26-Feb-2019 10:55:23 Unpacking libx11-6:amd64 (2:1.6.3-1ubuntu2.1) ... build 26-Feb-2019 10:55:24 Selecting previously unselected package libxext6:amd64. build 26-Feb-2019 10:55:24 Preparing to unpack .../libxext6_2%3a1.3.3-1_amd64.deb ... build 26-Feb-2019 10:55:24 Unpacking libxext6:amd64 (2:1.3.3-1) ... build 26-Feb-2019 10:55:24 Selecting previously unselected package groff-base. build 26-Feb-2019 10:55:24 Preparing to unpack .../groff-base_1.22.3-7_amd64.deb ... build 26-Feb-2019 10:55:24 Unpacking groff-base (1.22.3-7) ... build 26-Feb-2019 10:55:25 Selecting previously unselected package bsdmainutils. build 26-Feb-2019 10:55:25 Preparing to unpack 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build 26-Feb-2019 10:57:01 Selecting previously unselected package r-base-dev. build 26-Feb-2019 10:57:01 Preparing to unpack .../r-base-dev_3.4.4-1xenial0_all.deb ... build 26-Feb-2019 10:57:01 Unpacking r-base-dev (3.4.4-1xenial0) ... build 26-Feb-2019 10:57:02 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 26-Feb-2019 10:57:02 Processing triggers for mime-support (3.59ubuntu1) ... build 26-Feb-2019 10:57:02 Processing triggers for systemd (229-4ubuntu21.15) ... build 26-Feb-2019 10:57:02 Setting up libgdbm3:amd64 (1.8.3-13.1) ... build 26-Feb-2019 10:57:02 Setting up libglib2.0-0:amd64 (2.48.2-0ubuntu4.1) ... build 26-Feb-2019 10:57:02 No schema files found: doing nothing. build 26-Feb-2019 10:57:02 Setting up libxau6:amd64 (1:1.0.8-1) ... build 26-Feb-2019 10:57:03 Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... build 26-Feb-2019 10:57:03 Setting up libxcb1:amd64 (1.11.1-1ubuntu1) ... build 26-Feb-2019 10:57:03 Setting up libx11-data (2:1.6.3-1ubuntu2.1) ... build 26-Feb-2019 10:57:03 Setting up libx11-6:amd64 (2:1.6.3-1ubuntu2.1) ... build 26-Feb-2019 10:57:03 Setting up libxext6:amd64 (2:1.3.3-1) ... build 26-Feb-2019 10:57:03 Setting up groff-base (1.22.3-7) ... build 26-Feb-2019 10:57:04 Setting up bsdmainutils (9.0.6ubuntu3) ... build 26-Feb-2019 10:57:04 update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode build 26-Feb-2019 10:57:04 update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode build 26-Feb-2019 10:57:04 Setting up libpipeline1:amd64 (1.4.1-2) ... build 26-Feb-2019 10:57:04 Setting up man-db (2.7.5-1) ... build 26-Feb-2019 10:57:04 debconf: unable to initialize frontend: Dialog build 26-Feb-2019 10:57:04 debconf: (TERM is not set, so the dialog frontend is not usable.) build 26-Feb-2019 10:57:04 debconf: falling back to frontend: Readline build 26-Feb-2019 10:57:04 Building database of manual pages ... build 26-Feb-2019 10:57:13 Setting up fonts-dejavu-core (2.35-1) ... build 26-Feb-2019 10:57:13 Setting up ucf (3.0036) ... build 26-Feb-2019 10:57:14 debconf: unable to initialize frontend: Dialog build 26-Feb-2019 10:57:14 debconf: (TERM is not set, so the dialog frontend is not usable.) build 26-Feb-2019 10:57:14 debconf: falling back to frontend: Readline build 26-Feb-2019 10:57:14 Setting up fontconfig-config (2.11.94-0ubuntu1.1) ... build 26-Feb-2019 10:57:16 Setting up libpng12-0:amd64 (1.2.54-1ubuntu1.1) ... build 26-Feb-2019 10:57:16 Setting up libfreetype6:amd64 (2.6.1-0.1ubuntu2.3) ... build 26-Feb-2019 10:57:17 Setting up libfontconfig1:amd64 (2.11.94-0ubuntu1.1) ... build 26-Feb-2019 10:57:17 Setting up fontconfig (2.11.94-0ubuntu1.1) ... build 26-Feb-2019 10:57:19 Regenerating fonts cache... done. build 26-Feb-2019 10:57:19 Setting up x11-common (1:7.7+13ubuntu3.1) ... build 26-Feb-2019 10:57:20 debconf: unable to initialize frontend: Dialog build 26-Feb-2019 10:57:20 debconf: (TERM is not set, so the dialog frontend is not usable.) build 26-Feb-2019 10:57:20 debconf: falling back to frontend: Readline build 26-Feb-2019 10:57:20 update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults build 26-Feb-2019 10:57:20 invoke-rc.d: could not determine current runlevel build 26-Feb-2019 10:57:20 invoke-rc.d: policy-rc.d denied execution of start. build 26-Feb-2019 10:57:20 Setting up libice6:amd64 (2:1.0.9-1) ... build 26-Feb-2019 10:57:20 Setting up libjpeg-turbo8:amd64 (1.4.2-0ubuntu3.1) ... build 26-Feb-2019 10:57:21 Setting up libpcrecpp0v5:amd64 (2:8.38-3.1) ... build 26-Feb-2019 10:57:21 Setting up libsigsegv2:amd64 (2.10-4) ... build 26-Feb-2019 10:57:22 Setting up libsm6:amd64 (2:1.2.2-1) ... build 26-Feb-2019 10:57:22 Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... build 26-Feb-2019 10:57:22 Setting up libxrender1:amd64 (1:0.9.9-0ubuntu1) ... build 26-Feb-2019 10:57:22 Setting up libxft2:amd64 (2.3.2-1) ... build 26-Feb-2019 10:57:22 Setting up libxss1:amd64 (1:1.2.2-1) ... build 26-Feb-2019 10:57:22 Setting up perl-modules-5.22 (5.22.1-9ubuntu0.6) ... build 26-Feb-2019 10:57:23 Setting up libperl5.22:amd64 (5.22.1-9ubuntu0.6) ... build 26-Feb-2019 10:57:23 Setting up perl (5.22.1-9ubuntu0.6) ... build 26-Feb-2019 10:57:23 update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode build 26-Feb-2019 10:57:23 Setting up libjbig0:amd64 (2.1-3.1) ... build 26-Feb-2019 10:57:23 Setting up libgmp10:amd64 (2:6.1.0+dfsg-2) ... build 26-Feb-2019 10:57:23 Setting up libmpfr4:amd64 (3.1.4-1) ... build 26-Feb-2019 10:57:23 Setting up libmpc3:amd64 (1.0.3-1) ... build 26-Feb-2019 10:57:24 Setting up tzdata (2018i-0ubuntu0.16.04) ... build 26-Feb-2019 10:57:24 debconf: unable to initialize frontend: Dialog build 26-Feb-2019 10:57:24 debconf: (TERM is not set, so the dialog frontend is not usable.) build 26-Feb-2019 10:57:24 debconf: falling back to frontend: Readline build 26-Feb-2019 10:57:24 build 26-Feb-2019 10:57:24 Current default time zone: 'Etc/UTC' build 26-Feb-2019 10:57:24 Local time is now: Tue Feb 26 16:57:24 UTC 2019. build 26-Feb-2019 10:57:24 Universal Time is now: Tue Feb 26 16:57:24 UTC 2019. build 26-Feb-2019 10:57:24 Run 'dpkg-reconfigure tzdata' if you wish to change it. build 26-Feb-2019 10:57:24 build 26-Feb-2019 10:57:24 Setting up bzip2 (1.0.6-8) ... build 26-Feb-2019 10:57:24 Setting up libmagic1:amd64 (1:5.25-2ubuntu1.1) ... build 26-Feb-2019 10:57:24 Setting up file (1:5.25-2ubuntu1.1) ... build 26-Feb-2019 10:57:25 Setting up libnettle6:amd64 (3.2-1ubuntu0.16.04.1) ... build 26-Feb-2019 10:57:25 Setting up libhogweed4:amd64 (3.2-1ubuntu0.16.04.1) ... build 26-Feb-2019 10:57:25 Setting up libidn11:amd64 (1.32-3ubuntu1.2) ... build 26-Feb-2019 10:57:25 Setting up libp11-kit0:amd64 (0.23.2-5~ubuntu16.04.1) ... build 26-Feb-2019 10:57:25 Setting up libtasn1-6:amd64 (4.7-3ubuntu0.16.04.3) ... build 26-Feb-2019 10:57:25 Setting up libgnutls30:amd64 (3.4.10-4ubuntu1.4) ... build 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libheimbase1-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 26-Feb-2019 10:57:28 Setting up libwind0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 26-Feb-2019 10:57:28 Setting up libhx509-5-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 26-Feb-2019 10:57:28 Setting up libkrb5-26-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 26-Feb-2019 10:57:29 Setting up libheimntlm0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 26-Feb-2019 10:57:29 Setting up libgssapi3-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 26-Feb-2019 10:57:29 Setting up libicu55:amd64 (55.1-7ubuntu0.4) ... build 26-Feb-2019 10:57:29 Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-14ubuntu0.1) ... build 26-Feb-2019 10:57:29 Setting up libsasl2-2:amd64 (2.1.26.dfsg1-14ubuntu0.1) ... build 26-Feb-2019 10:57:29 Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2ubuntu3.4) ... build 26-Feb-2019 10:57:30 Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d-1ubuntu0.1) ... build 26-Feb-2019 10:57:30 Setting up libxml2:amd64 (2.9.3+dfsg1-1ubuntu0.6) ... build 26-Feb-2019 10:57:30 Setting up libxmuu1:amd64 (2:1.1.2-2) ... build 26-Feb-2019 10:57:30 Setting up xauth (1:1.0.9-1ubuntu2) ... build 26-Feb-2019 10:57:30 Setting up m4 (1.4.17-5) ... build 26-Feb-2019 10:57:30 Setting up autoconf (2.69-9) ... build 26-Feb-2019 10:57:30 Setting up autotools-dev (20150820.1) ... build 26-Feb-2019 10:57:31 Setting up automake (1:1.15-4ubuntu1) ... build 26-Feb-2019 10:57:31 update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode build 26-Feb-2019 10:57:31 Setting up binutils (2.26.1-1ubuntu1~16.04.8) ... build 26-Feb-2019 10:57:31 Setting up libc-dev-bin (2.23-0ubuntu11) ... build 26-Feb-2019 10:57:32 Setting up linux-libc-dev:amd64 (4.4.0-142.168) ... build 26-Feb-2019 10:57:32 Setting up libc6-dev:amd64 (2.23-0ubuntu11) ... build 26-Feb-2019 10:57:32 Setting up libisl15:amd64 (0.16.1-1) ... build 26-Feb-2019 10:57:32 Setting up cpp-5 (5.4.0-6ubuntu1~16.04.11) ... build 26-Feb-2019 10:57:32 Setting up cpp (4:5.3.1-1ubuntu1) ... build 26-Feb-2019 10:57:32 Setting up libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 26-Feb-2019 10:57:33 Setting up libgomp1:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 26-Feb-2019 10:57:33 Setting up libitm1:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 26-Feb-2019 10:57:33 Setting up libatomic1:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 26-Feb-2019 10:57:33 Setting up libasan2:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 26-Feb-2019 10:57:33 Setting up liblsan0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 26-Feb-2019 10:57:33 Setting up libtsan0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 26-Feb-2019 10:57:33 Setting up libubsan0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 26-Feb-2019 10:57:33 Setting up libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 26-Feb-2019 10:57:34 Setting up libmpx0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 26-Feb-2019 10:57:34 Setting up libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 26-Feb-2019 10:57:34 Setting up libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 26-Feb-2019 10:57:34 Setting up gcc-5 (5.4.0-6ubuntu1~16.04.11) ... build 26-Feb-2019 10:57:34 Setting up gcc (4:5.3.1-1ubuntu1) ... build 26-Feb-2019 10:57:34 Setting up libstdc++-5-dev:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 26-Feb-2019 10:57:34 Setting up g++-5 (5.4.0-6ubuntu1~16.04.11) ... build 26-Feb-2019 10:57:35 Setting up g++ (4:5.3.1-1ubuntu1) ... build 26-Feb-2019 10:57:35 update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode build 26-Feb-2019 10:57:35 Setting up make (4.1-6) ... build 26-Feb-2019 10:57:35 Setting up libdpkg-perl (1.18.4ubuntu1.5) ... build 26-Feb-2019 10:57:35 Setting up xz-utils (5.1.1alpha+20120614-2ubuntu2) ... build 26-Feb-2019 10:57:35 update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode build 26-Feb-2019 10:57:35 Setting up patch (2.7.5-1ubuntu0.16.04.1) ... build 26-Feb-2019 10:57:35 Setting up dpkg-dev (1.18.4ubuntu1.5) ... build 26-Feb-2019 10:57:36 Setting up build-essential (12.1ubuntu2) ... build 26-Feb-2019 10:57:36 Setting up libcroco3:amd64 (0.6.11-1) ... build 26-Feb-2019 10:57:36 Setting up gettext (0.19.7-2ubuntu3.1) ... build 26-Feb-2019 10:57:37 Setting up intltool-debian (0.35.0+20060710.4) ... build 26-Feb-2019 10:57:37 Setting up po-debconf (1.0.19) ... build 26-Feb-2019 10:57:37 Setting up libarchive-zip-perl (1.56-2ubuntu0.1) ... build 26-Feb-2019 10:57:37 Setting up libfile-stripnondeterminism-perl (0.015-1) ... build 26-Feb-2019 10:57:37 Setting up libtimedate-perl (2.3000-2) ... build 26-Feb-2019 10:57:37 Setting up liburi-perl (1.71-1) ... build 26-Feb-2019 10:57:37 Setting up libencode-locale-perl (1.05-1) ... build 26-Feb-2019 10:57:38 Setting up libhttp-date-perl (6.02-1) ... build 26-Feb-2019 10:57:38 Setting up libfile-listing-perl (6.04-1) ... build 26-Feb-2019 10:57:38 Setting up libhtml-tagset-perl (3.20-2) ... build 26-Feb-2019 10:57:38 Setting up libhtml-parser-perl (3.72-1) ... build 26-Feb-2019 10:57:38 Setting up libhtml-tree-perl (5.03-2) ... build 26-Feb-2019 10:57:38 Setting up libio-html-perl (1.001-1) ... build 26-Feb-2019 10:57:38 Setting up liblwp-mediatypes-perl (6.02-1) ... build 26-Feb-2019 10:57:39 Setting up libhttp-message-perl (6.11-1) ... build 26-Feb-2019 10:57:39 Setting up libhttp-cookies-perl (6.01-1) ... build 26-Feb-2019 10:57:39 Setting up libhttp-negotiate-perl (6.00-2) ... build 26-Feb-2019 10:57:39 Setting up libnet-ssleay-perl (1.72-1build1) ... build 26-Feb-2019 10:57:39 Setting up libio-socket-ssl-perl (2.024-1) ... build 26-Feb-2019 10:57:39 Setting up libnet-http-perl (6.09-1) ... build 26-Feb-2019 10:57:39 Setting up libwww-robotrules-perl (6.01-1) ... build 26-Feb-2019 10:57:40 Setting up python-six (1.10.0-3) ... build 26-Feb-2019 10:57:41 Setting up python-pkg-resources (20.7.0-1) ... build 26-Feb-2019 10:57:42 Setting up python-scour (0.32-1) ... build 26-Feb-2019 10:57:43 Setting up libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 26-Feb-2019 10:57:43 Setting up libgfortran-5-dev:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 26-Feb-2019 10:57:43 Setting up gfortran-5 (5.4.0-6ubuntu1~16.04.11) ... build 26-Feb-2019 10:57:43 Setting up gfortran (4:5.3.1-1ubuntu1) ... build 26-Feb-2019 10:57:43 update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode build 26-Feb-2019 10:57:43 update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode build 26-Feb-2019 10:57:44 Setting up icu-devtools (55.1-7ubuntu0.4) ... build 26-Feb-2019 10:57:44 Setting up libblas-common (3.6.0-2ubuntu2) ... build 26-Feb-2019 10:57:44 Setting up libblas3 (3.6.0-2ubuntu2) ... build 26-Feb-2019 10:57:44 update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode build 26-Feb-2019 10:57:44 Setting up libblas-dev (3.6.0-2ubuntu2) ... build 26-Feb-2019 10:57:44 update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode build 26-Feb-2019 10:57:44 Setting up libbz2-dev:amd64 (1.0.6-8) ... build 26-Feb-2019 10:57:44 Setting up libpixman-1-0:amd64 (0.33.6-1) ... build 26-Feb-2019 10:57:45 Setting up libxcb-render0:amd64 (1.11.1-1ubuntu1) ... build 26-Feb-2019 10:57:45 Setting up libxcb-shm0:amd64 (1.11.1-1ubuntu1) ... build 26-Feb-2019 10:57:45 Setting up libcairo2:amd64 (1.14.6-1) ... build 26-Feb-2019 10:57:45 Setting up libcurl3:amd64 (7.47.0-1ubuntu2.12) ... build 26-Feb-2019 10:57:45 Setting up libdatrie1:amd64 (0.2.10-2) ... build 26-Feb-2019 10:57:45 Setting up libgraphite2-3:amd64 (1.3.10-0ubuntu0.16.04.1) ... build 26-Feb-2019 10:57:45 Setting up libharfbuzz0b:amd64 (1.0.1-1ubuntu0.1) ... build 26-Feb-2019 10:57:46 Setting up libicu-dev:amd64 (55.1-7ubuntu0.4) ... build 26-Feb-2019 10:57:46 Setting up libjpeg-turbo8-dev:amd64 (1.4.2-0ubuntu3.1) ... build 26-Feb-2019 10:57:46 Setting up libjpeg8:amd64 (8c-2ubuntu8) ... build 26-Feb-2019 10:57:47 Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... build 26-Feb-2019 10:57:47 Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... build 26-Feb-2019 10:57:47 Setting up liblapack3 (3.6.0-2ubuntu2) ... build 26-Feb-2019 10:57:47 update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode build 26-Feb-2019 10:57:47 Setting up liblapack-dev (3.6.0-2ubuntu2) ... build 26-Feb-2019 10:57:47 update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode build 26-Feb-2019 10:57:47 Setting up libtinfo-dev:amd64 (6.0+20160213-1ubuntu1) ... build 26-Feb-2019 10:57:48 Setting up libncurses5-dev:amd64 (6.0+20160213-1ubuntu1) ... build 26-Feb-2019 10:57:48 Setting up libthai-data (0.1.24-2) ... build 26-Feb-2019 10:57:48 Setting up libthai0:amd64 (0.1.24-2) ... build 26-Feb-2019 10:57:48 Setting up libpango-1.0-0:amd64 (1.38.1-1) ... build 26-Feb-2019 10:57:48 Setting up libpangoft2-1.0-0:amd64 (1.38.1-1) ... build 26-Feb-2019 10:57:48 Setting up libpangocairo-1.0-0:amd64 (1.38.1-1) ... build 26-Feb-2019 10:57:48 Setting up libpaper1:amd64 (1.1.24+nmu4ubuntu1) ... build 26-Feb-2019 10:57:49 debconf: unable to initialize frontend: Dialog build 26-Feb-2019 10:57:49 debconf: (TERM is not set, so the dialog frontend is not usable.) build 26-Feb-2019 10:57:49 debconf: falling back to frontend: Readline build 26-Feb-2019 10:57:49 build 26-Feb-2019 10:57:49 Creating config file /etc/papersize with new version build 26-Feb-2019 10:57:49 Setting up libpaper-utils (1.1.24+nmu4ubuntu1) ... build 26-Feb-2019 10:57:49 Setting up libpcre16-3:amd64 (2:8.38-3.1) ... build 26-Feb-2019 10:57:49 Setting up libpcre32-3:amd64 (2:8.38-3.1) ... build 26-Feb-2019 10:57:49 Setting up libpcre3-dev:amd64 (2:8.38-3.1) ... build 26-Feb-2019 10:57:49 Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4.1) ... build 26-Feb-2019 10:57:50 Setting up libpng12-dev:amd64 (1.2.54-1ubuntu1.1) ... build 26-Feb-2019 10:57:50 Setting up libreadline6-dev:amd64 (6.3-8ubuntu2) ... build 26-Feb-2019 10:57:50 Setting up libreadline-dev:amd64 (6.3-8ubuntu2) ... build 26-Feb-2019 10:57:50 Setting up libtcl8.6:amd64 (8.6.5+dfsg-2) ... build 26-Feb-2019 10:57:50 Setting up libtiff5:amd64 (4.0.6-1ubuntu0.5) ... build 26-Feb-2019 10:57:50 Setting up libtk8.6:amd64 (8.6.5-1) ... build 26-Feb-2019 10:57:51 Setting up libxt6:amd64 (1:1.1.5-0ubuntu1) ... build 26-Feb-2019 10:57:51 Setting up pkg-config (0.29.1-0ubuntu1) ... build 26-Feb-2019 10:57:51 Setting up zip (3.0-11) ... build 26-Feb-2019 10:57:52 Setting up unzip (6.0-20ubuntu1) ... build 26-Feb-2019 10:57:52 Setting up xdg-utils (1.1.1-1ubuntu1.16.04.3) ... build 26-Feb-2019 10:57:52 Setting up r-base-core (3.4.4-1xenial0) ... build 26-Feb-2019 10:57:53 debconf: unable to initialize frontend: Dialog build 26-Feb-2019 10:57:53 debconf: (TERM is not set, so the dialog frontend is not usable.) build 26-Feb-2019 10:57:53 debconf: falling back to frontend: Readline build 26-Feb-2019 10:57:53 build 26-Feb-2019 10:57:53 Creating config file /etc/R/Renviron with new version build 26-Feb-2019 10:57:53 Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... build 26-Feb-2019 10:57:53 Setting up debhelper (9.20160115ubuntu3) ... build 26-Feb-2019 10:57:53 Setting up libwww-perl (6.15-1) ... build 26-Feb-2019 10:57:53 Setting up libxml-parser-perl (2.44-1build1) ... build 26-Feb-2019 10:57:53 Setting up intltool (0.51.0-2ubuntu1.16.04.1) ... build 26-Feb-2019 10:57:54 Setting up dh-translations (129) ... build 26-Feb-2019 10:57:54 Setting up cdbs (0.4.130ubuntu2) ... build 26-Feb-2019 10:57:54 Setting up r-base-dev (3.4.4-1xenial0) ... build 26-Feb-2019 10:57:54 Setting up dh-strip-nondeterminism (0.015-1) ... build 26-Feb-2019 10:57:54 Setting up liblwp-protocol-https-perl (6.06-2) ... build 26-Feb-2019 10:57:54 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 26-Feb-2019 10:57:54 Processing triggers for systemd (229-4ubuntu21.15) ... build 26-Feb-2019 10:57:55 Installing package into '/usr/local/lib/R/site-library' build 26-Feb-2019 10:57:55 (as 'lib' is unspecified) build 26-Feb-2019 10:57:55 trying URL 'http://cran.rstudio.com/src/contrib/jsonlite_1.6.tar.gz' build 26-Feb-2019 10:57:56 Content type 'application/x-gzip' length 1052728 bytes (1.0 MB) build 26-Feb-2019 10:57:56 ================================================== build 26-Feb-2019 10:57:56 downloaded 1.0 MB build 26-Feb-2019 10:57:56 build 26-Feb-2019 10:57:56 * installing *source* package 'jsonlite' ... build 26-Feb-2019 10:57:56 ** package 'jsonlite' successfully unpacked and MD5 sums checked build 26-Feb-2019 10:57:56 ** libs build 26-Feb-2019 10:57:56 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base64.c -o base64.o build 26-Feb-2019 10:57:56 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_array.c -o collapse_array.o build 26-Feb-2019 10:57:56 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_object.c -o collapse_object.o build 26-Feb-2019 10:57:56 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_pretty.c -o collapse_pretty.o build 26-Feb-2019 10:57:56 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c escape_chars.c -o escape_chars.o build 26-Feb-2019 10:57:57 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c integer64_to_na.c -o integer64_to_na.o build 26-Feb-2019 10:57:57 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_datelist.c -o is_datelist.o build 26-Feb-2019 10:57:57 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_recordlist.c -o is_recordlist.o build 26-Feb-2019 10:57:57 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_scalarlist.c -o is_scalarlist.o build 26-Feb-2019 10:57:57 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c modp_numtoa.c -o modp_numtoa.o build 26-Feb-2019 10:57:57 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c null_to_na.c -o null_to_na.o build 26-Feb-2019 10:57:57 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c num_to_char.c -o num_to_char.o build 26-Feb-2019 10:57:57 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c parse.c -o parse.o build 26-Feb-2019 10:57:57 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c prettify.c -o prettify.o build 26-Feb-2019 10:57:57 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c push_parser.c -o push_parser.o build 26-Feb-2019 10:57:57 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c r-base64.c -o r-base64.o build 26-Feb-2019 10:57:57 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c register.c -o register.o build 26-Feb-2019 10:57:57 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c row_collapse.c -o row_collapse.o build 26-Feb-2019 10:57:57 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transpose_list.c -o transpose_list.o build 26-Feb-2019 10:57:58 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c validate.c -o validate.o build 26-Feb-2019 10:57:58 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl.c -o yajl/yajl.o build 26-Feb-2019 10:57:58 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o build 26-Feb-2019 10:57:58 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_buf.c -o yajl/yajl_buf.o build 26-Feb-2019 10:57:58 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_encode.c -o yajl/yajl_encode.o build 26-Feb-2019 10:57:58 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_gen.c -o yajl/yajl_gen.o build 26-Feb-2019 10:57:58 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_lex.c -o yajl/yajl_lex.o build 26-Feb-2019 10:57:58 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_parser.c -o yajl/yajl_parser.o build 26-Feb-2019 10:57:58 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_tree.c -o yajl/yajl_tree.o build 26-Feb-2019 10:57:59 ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o build 26-Feb-2019 10:57:59 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/usr/lib/R/lib -lR build 26-Feb-2019 10:57:59 installing to /usr/local/lib/R/site-library/jsonlite/libs build 26-Feb-2019 10:57:59 ** R build 26-Feb-2019 10:57:59 ** inst build 26-Feb-2019 10:57:59 ** preparing package for lazy loading build 26-Feb-2019 10:57:59 ** help build 26-Feb-2019 10:57:59 *** installing help indices build 26-Feb-2019 10:57:59 ** building package indices build 26-Feb-2019 10:57:59 ** installing vignettes build 26-Feb-2019 10:57:59 ** testing if installed package can be loaded build 26-Feb-2019 10:57:59 * DONE (jsonlite) build 26-Feb-2019 10:57:59  build 26-Feb-2019 10:57:59 The downloaded source packages are in build 26-Feb-2019 10:57:59 '/tmp/RtmpWwCe0g/downloaded_packages' build 26-Feb-2019 10:57:59 [1] "/usr/local/lib/R/site-library/jsonlite" build 26-Feb-2019 10:58:06 Removing intermediate container c30b3f2c3f01 build 26-Feb-2019 10:58:06 ---> f112aceab733 build 26-Feb-2019 10:58:06 Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/ build 26-Feb-2019 10:58:06 ---> 68be831ba35b build 26-Feb-2019 10:58:06 Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 26-Feb-2019 10:58:07 ---> Running in 6f741481d990 build 26-Feb-2019 10:58:07 Removing intermediate container 6f741481d990 build 26-Feb-2019 10:58:07 ---> f1688e00c7e6 build 26-Feb-2019 10:58:07 Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 26-Feb-2019 10:58:07 ---> Running in a3a236e1df79 build 26-Feb-2019 10:58:07 Removing intermediate container a3a236e1df79 build 26-Feb-2019 10:58:07 ---> a59b1f1b040a build 26-Feb-2019 10:58:07 Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ build 26-Feb-2019 10:58:08 ---> Running in df12090cc4cd build 26-Feb-2019 10:58:08 Removing intermediate container df12090cc4cd build 26-Feb-2019 10:58:08 ---> ee0dcabefab6 build 26-Feb-2019 10:58:08 Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi build 26-Feb-2019 10:58:08 ---> Running in b0539f660664 build 26-Feb-2019 10:58:08 Removing intermediate container b0539f660664 build 26-Feb-2019 10:58:08 ---> f438e036b2a2 build 26-Feb-2019 10:58:08 Step 9/10 : ONBUILD ADD . /home/clowder/ build 26-Feb-2019 10:58:09 ---> Running in 71bdd1d1e729 build 26-Feb-2019 10:58:09 Removing intermediate container 71bdd1d1e729 build 26-Feb-2019 10:58:09 ---> bdb37fcd5a12 build 26-Feb-2019 10:58:09 Step 10/10 : CMD python r_extractor.py build 26-Feb-2019 10:58:09 ---> Running in 2cf8047bfc61 build 26-Feb-2019 10:58:09 Removing intermediate container 2cf8047bfc61 build 26-Feb-2019 10:58:09 ---> c11fc33667d6 build 26-Feb-2019 10:58:09 Successfully built c11fc33667d6 build 26-Feb-2019 10:58:09 Successfully tagged clowder/extractors-simple-r-extractor:onbuild build 26-Feb-2019 10:58:10 Sending build context to Docker daemon 267.8kB build 26-Feb-2019 10:58:10 build 26-Feb-2019 10:58:10 Step 1/9 : FROM ubuntu:16.04 build 26-Feb-2019 10:58:10 ---> 7e87e2b3bf7a build 26-Feb-2019 10:58:10 Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> 30f0fa26d340 build 26-Feb-2019 10:58:10 Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> 0cb16d4f85af build 26-Feb-2019 10:58:10 Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> 830fd0a817ec build 26-Feb-2019 10:58:10 Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/ build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> 4132efce4458 build 26-Feb-2019 10:58:10 Step 6/9 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> 5b80bd24743a build 26-Feb-2019 10:58:10 Step 7/9 : WORKDIR /home/clowder build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> 887f7eea03be build 26-Feb-2019 10:58:10 Step 8/9 : COPY notifications.json /home/clowder build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> b7aea83f36a5 build 26-Feb-2019 10:58:10 Step 9/9 : CMD python "./${MAIN_SCRIPT}" build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> 4a022a6ba1f6 build 26-Feb-2019 10:58:10 [Warning] One or more build-args [PYTHON_VERSION] were not consumed build 26-Feb-2019 10:58:10 Successfully built 4a022a6ba1f6 build 26-Feb-2019 10:58:10 Successfully tagged clowder/pyclowder-python3:latest build 26-Feb-2019 10:58:10 Sending build context to Docker daemon 266.2kB build 26-Feb-2019 10:58:10 build 26-Feb-2019 10:58:10 Step 1/6 : FROM clowder/pyclowder build 26-Feb-2019 10:58:10 ---> 4a022a6ba1f6 build 26-Feb-2019 10:58:10 Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> 176f52709a9c build 26-Feb-2019 10:58:10 Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> b0fa1abda2bc build 26-Feb-2019 10:58:10 Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> b2d8b99c4827 build 26-Feb-2019 10:58:10 Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> 22265b1f4a89 build 26-Feb-2019 10:58:10 Step 6/6 : ONBUILD ADD . /home/clowder/ build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> 44b8722e2785 build 26-Feb-2019 10:58:10 [Warning] One or more build-args [PYTHON_VERSION] were not consumed build 26-Feb-2019 10:58:10 Successfully built 44b8722e2785 build 26-Feb-2019 10:58:10 Successfully tagged clowder/pyclowder-python3:onbuild build 26-Feb-2019 10:58:10 Sending build context to Docker daemon 6.656kB build 26-Feb-2019 10:58:10 build 26-Feb-2019 10:58:10 Step 1/9 : FROM clowder/pyclowder:onbuild build 26-Feb-2019 10:58:10 # Executing 5 build triggers build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> 27c7f794c655 build 26-Feb-2019 10:58:10 Step 2/9 : ENV EXTRACTION_FUNC="" build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> e20e3221028c build 26-Feb-2019 10:58:10 Step 3/9 : ENV EXTRACTION_MODULE="" build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> 3d8e2bae6937 build 26-Feb-2019 10:58:10 Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> a89a37886536 build 26-Feb-2019 10:58:10 Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> 4a85c52b89aa build 26-Feb-2019 10:58:10 Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> 6e77c8448344 build 26-Feb-2019 10:58:10 Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> f5bc265b788f build 26-Feb-2019 10:58:10 Step 8/9 : ONBUILD ADD . /home/clowder/ build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> fb5450a47f29 build 26-Feb-2019 10:58:10 Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> 1f2994287c8e build 26-Feb-2019 10:58:10 [Warning] One or more build-args [PYTHON_VERSION] were not consumed build 26-Feb-2019 10:58:10 Successfully built 1f2994287c8e build 26-Feb-2019 10:58:10 Successfully tagged clowder/extractors-simple-extractor-python3:onbuild build 26-Feb-2019 10:58:10 Sending build context to Docker daemon 13.31kB build 26-Feb-2019 10:58:10 build 26-Feb-2019 10:58:10 Step 1/10 : FROM clowder/pyclowder:latest build 26-Feb-2019 10:58:10 ---> 4a022a6ba1f6 build 26-Feb-2019 10:58:10 Step 2/10 : ENV R_SCRIPT="" R_FUNCTION="" build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> d3c7d7713554 build 26-Feb-2019 10:58:10 Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> f112aceab733 build 26-Feb-2019 10:58:10 Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/ build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> 68be831ba35b build 26-Feb-2019 10:58:10 Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> f1688e00c7e6 build 26-Feb-2019 10:58:10 Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> a59b1f1b040a build 26-Feb-2019 10:58:10 Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> ee0dcabefab6 build 26-Feb-2019 10:58:10 Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> f438e036b2a2 build 26-Feb-2019 10:58:10 Step 9/10 : ONBUILD ADD . /home/clowder/ build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> bdb37fcd5a12 build 26-Feb-2019 10:58:10 Step 10/10 : CMD python r_extractor.py build 26-Feb-2019 10:58:10 ---> Using cache build 26-Feb-2019 10:58:10 ---> c11fc33667d6 build 26-Feb-2019 10:58:10 [Warning] One or more build-args [PYTHON_VERSION] were not consumed build 26-Feb-2019 10:58:10 Successfully built c11fc33667d6 build 26-Feb-2019 10:58:10 Successfully tagged clowder/extractors-simple-r-extractor-python3:onbuild build 26-Feb-2019 10:58:10 Sending build context to Docker daemon 9.216kB build 26-Feb-2019 10:58:10 build 26-Feb-2019 10:58:10 Step 1/2 : FROM clowder/pyclowder:onbuild build 26-Feb-2019 10:58:10 # Executing 5 build triggers build 26-Feb-2019 10:58:11 ---> Running in 1b36bf34ba23 build 26-Feb-2019 10:58:13 Removing intermediate container 1b36bf34ba23 build 26-Feb-2019 10:58:13 ---> Running in 53c8f960951e build 26-Feb-2019 10:58:15 Removing intermediate container 53c8f960951e build 26-Feb-2019 10:58:15 ---> 8d2d3f90da3e build 26-Feb-2019 10:58:15 Step 2/2 : ENV MAIN_SCRIPT="wordcount.py" build 26-Feb-2019 10:58:15 ---> Running in 8d75a764c950 build 26-Feb-2019 10:58:15 Removing intermediate container 8d75a764c950 build 26-Feb-2019 10:58:15 ---> 0fd85c37ae5d build 26-Feb-2019 10:58:15 Successfully built 0fd85c37ae5d build 26-Feb-2019 10:58:15 Successfully tagged clowder/extractors-wordcount:latest build 26-Feb-2019 10:58:16 Sending build context to Docker daemon 5.12kB build 26-Feb-2019 10:58:16 build 26-Feb-2019 10:58:16 Step 1/3 : FROM clowder/extractors-simple-extractor:onbuild build 26-Feb-2019 10:58:16 # Executing 5 build triggers build 26-Feb-2019 10:58:17 ---> Running in eabfd2d0353a build 26-Feb-2019 10:58:18 Removing intermediate container eabfd2d0353a build 26-Feb-2019 10:58:19 ---> Running in 4f0059055d3b build 26-Feb-2019 10:58:20 Removing intermediate container 4f0059055d3b build 26-Feb-2019 10:58:21 ---> d6b171134da1 build 26-Feb-2019 10:58:21 Step 2/3 : ENV EXTRACTION_FUNC="wordcount" build 26-Feb-2019 10:58:21 ---> Running in cbeaee431af4 build 26-Feb-2019 10:58:22 Removing intermediate container cbeaee431af4 build 26-Feb-2019 10:58:22 ---> 2281ab54e8d7 build 26-Feb-2019 10:58:22 Step 3/3 : ENV EXTRACTION_MODULE="wordcount" build 26-Feb-2019 10:58:22 ---> Running in 75bb978bc0ac build 26-Feb-2019 10:58:22 Removing intermediate container 75bb978bc0ac build 26-Feb-2019 10:58:22 ---> 543abf85aa73 build 26-Feb-2019 10:58:22 Successfully built 543abf85aa73 build 26-Feb-2019 10:58:23 Successfully tagged clowder/extractors-wordcount-simple-extractor:latest build 26-Feb-2019 10:58:23 Sending build context to Docker daemon 5.12kB build 26-Feb-2019 10:58:23 build 26-Feb-2019 10:58:23 Step 1/2 : FROM clowder/extractors-simple-r-extractor:onbuild build 26-Feb-2019 10:58:23 # Executing 5 build triggers build 26-Feb-2019 10:58:23 ---> Running in dfdab441e5c3 build 26-Feb-2019 10:58:25 Removing intermediate container dfdab441e5c3 build 26-Feb-2019 10:58:25 ---> Running in 9983fda59173 build 26-Feb-2019 10:58:27 Removing intermediate container 9983fda59173 build 26-Feb-2019 10:58:28 ---> 8d238571b29b build 26-Feb-2019 10:58:28 Step 2/2 : ENV R_SCRIPT="wordcount.R" R_FUNCTION="process_file" build 26-Feb-2019 10:58:28 ---> Running in 9445ae0a3aa4 build 26-Feb-2019 10:58:28 Removing intermediate container 9445ae0a3aa4 build 26-Feb-2019 10:58:28 ---> 91f72837a87f build 26-Feb-2019 10:58:28 Successfully built 91f72837a87f build 26-Feb-2019 10:58:28 Successfully tagged clowder/extractors-wordcount-simple-r-extractor:latest build 26-Feb-2019 10:58:28 Sending build context to Docker daemon 8.192kB build 26-Feb-2019 10:58:28 build 26-Feb-2019 10:58:28 Step 1/7 : FROM python:3.5 build 26-Feb-2019 10:58:29 3.5: Pulling from library/python build 26-Feb-2019 10:58:29 741437d97401: Pulling fs layer build 26-Feb-2019 10:58:29 34d8874714d7: Pulling fs layer build 26-Feb-2019 10:58:29 0a108aa26679: Pulling fs layer build 26-Feb-2019 10:58:29 7f0334c36886: Pulling fs layer build 26-Feb-2019 10:58:29 65c95cb8b3be: Pulling fs layer build 26-Feb-2019 10:58:29 36185429e34c: Pulling fs layer build 26-Feb-2019 10:58:29 9914605f1203: Pulling fs layer build 26-Feb-2019 10:58:29 a590c5cc1f30: Pulling fs layer build 26-Feb-2019 10:58:29 db6449a17287: Pulling fs layer build 26-Feb-2019 10:58:29 36185429e34c: Waiting build 26-Feb-2019 10:58:29 9914605f1203: Waiting build 26-Feb-2019 10:58:29 a590c5cc1f30: Waiting build 26-Feb-2019 10:58:29 db6449a17287: Waiting build 26-Feb-2019 10:58:29 7f0334c36886: Waiting build 26-Feb-2019 10:58:29 65c95cb8b3be: Waiting build 26-Feb-2019 10:58:29 0a108aa26679: Verifying Checksum build 26-Feb-2019 10:58:29 0a108aa26679: Download complete build 26-Feb-2019 10:58:29 34d8874714d7: Verifying Checksum build 26-Feb-2019 10:58:29 34d8874714d7: Download complete build 26-Feb-2019 10:58:30 741437d97401: Verifying Checksum build 26-Feb-2019 10:58:30 741437d97401: Download complete build 26-Feb-2019 10:58:30 36185429e34c: Verifying Checksum build 26-Feb-2019 10:58:30 36185429e34c: Download complete build 26-Feb-2019 10:58:31 7f0334c36886: Verifying Checksum build 26-Feb-2019 10:58:31 7f0334c36886: Download complete build 26-Feb-2019 10:58:31 a590c5cc1f30: Verifying Checksum build 26-Feb-2019 10:58:31 a590c5cc1f30: Download complete build 26-Feb-2019 10:58:31 db6449a17287: Verifying Checksum build 26-Feb-2019 10:58:31 db6449a17287: Download complete build 26-Feb-2019 10:58:31 9914605f1203: Verifying Checksum build 26-Feb-2019 10:58:31 9914605f1203: Download complete build 26-Feb-2019 10:58:33 741437d97401: Pull complete build 26-Feb-2019 10:58:34 34d8874714d7: Pull complete build 26-Feb-2019 10:58:35 65c95cb8b3be: Verifying Checksum build 26-Feb-2019 10:58:35 65c95cb8b3be: Download complete build 26-Feb-2019 10:58:41 0a108aa26679: Pull complete build 26-Feb-2019 10:58:44 7f0334c36886: Pull complete build 26-Feb-2019 10:58:56 65c95cb8b3be: Pull complete build 26-Feb-2019 10:58:57 36185429e34c: Pull complete build 26-Feb-2019 10:58:58 9914605f1203: Pull complete build 26-Feb-2019 10:58:59 a590c5cc1f30: Pull complete build 26-Feb-2019 10:58:59 db6449a17287: Pull complete build 26-Feb-2019 10:58:59 Digest: sha256:8948474618d373b9b32f991eb325329c54ecb853428a78e80a17842ca81e4b2e build 26-Feb-2019 10:58:59 Status: Downloaded newer image for python:3.5 build 26-Feb-2019 10:58:59 ---> 32184312b88b build 26-Feb-2019 10:58:59 Step 2/7 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq/%2F" build 26-Feb-2019 10:58:59 ---> Running in 35a3356edc50 build 26-Feb-2019 10:59:00 Removing intermediate container 35a3356edc50 build 26-Feb-2019 10:59:00 ---> b3829af92c14 build 26-Feb-2019 10:59:00 Step 3/7 : EXPOSE 9999 build 26-Feb-2019 10:59:00 ---> Running in 0d2f76290fe2 build 26-Feb-2019 10:59:00 Removing intermediate container 0d2f76290fe2 build 26-Feb-2019 10:59:00 ---> 2804633ccad8 build 26-Feb-2019 10:59:00 Step 4/7 : RUN pip install pika==0.11.2 requests==2.18.4 build 26-Feb-2019 10:59:00 ---> Running in 7ce5d7986ab5 build 26-Feb-2019 10:59:02 Collecting pika==0.11.2 build 26-Feb-2019 10:59:02 Downloading https://files.pythonhosted.org/packages/76/b4/0ada6918ac79ce4d8d45d0ba436ee21a1ef685047fb1dde4d2de0178b327/pika-0.11.2-py2.py3-none-any.whl (107kB) build 26-Feb-2019 10:59:02 Collecting requests==2.18.4 build 26-Feb-2019 10:59:02 Downloading https://files.pythonhosted.org/packages/49/df/50aa1999ab9bde74656c2919d9c0c085fd2b3775fd3eca826012bef76d8c/requests-2.18.4-py2.py3-none-any.whl (88kB) build 26-Feb-2019 10:59:02 Collecting idna<2.7,>=2.5 (from requests==2.18.4) build 26-Feb-2019 10:59:02 Downloading https://files.pythonhosted.org/packages/27/cc/6dd9a3869f15c2edfab863b992838277279ce92663d334df9ecf5106f5c6/idna-2.6-py2.py3-none-any.whl (56kB) build 26-Feb-2019 10:59:02 Collecting chardet<3.1.0,>=3.0.2 (from requests==2.18.4) build 26-Feb-2019 10:59:03 Downloading https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl (133kB) build 26-Feb-2019 10:59:03 Collecting urllib3<1.23,>=1.21.1 (from requests==2.18.4) build 26-Feb-2019 10:59:03 Downloading https://files.pythonhosted.org/packages/63/cb/6965947c13a94236f6d4b8223e21beb4d576dc72e8130bd7880f600839b8/urllib3-1.22-py2.py3-none-any.whl (132kB) build 26-Feb-2019 10:59:03 Collecting certifi>=2017.4.17 (from requests==2.18.4) build 26-Feb-2019 10:59:03 Downloading https://files.pythonhosted.org/packages/9f/e0/accfc1b56b57e9750eba272e24c4dddeac86852c2bebd1236674d7887e8a/certifi-2018.11.29-py2.py3-none-any.whl (154kB) build 26-Feb-2019 10:59:03 Installing collected packages: pika, idna, chardet, urllib3, certifi, requests build 26-Feb-2019 10:59:03 Successfully installed certifi-2018.11.29 chardet-3.0.4 idna-2.6 pika-0.11.2 requests-2.18.4 urllib3-1.22 build 26-Feb-2019 10:59:05 Removing intermediate container 7ce5d7986ab5 build 26-Feb-2019 10:59:05 ---> 8c9582a51f38 build 26-Feb-2019 10:59:05 Step 5/7 : WORKDIR /src build 26-Feb-2019 10:59:05 ---> Running in 49d010e55f13 build 26-Feb-2019 10:59:05 Removing intermediate container 49d010e55f13 build 26-Feb-2019 10:59:05 ---> e53d9d551634 build 26-Feb-2019 10:59:05 Step 6/7 : COPY monitor.py /src/ build 26-Feb-2019 10:59:06 ---> f442a663424e build 26-Feb-2019 10:59:06 Step 7/7 : CMD python monitor.py build 26-Feb-2019 10:59:06 ---> Running in a96af1791e41 build 26-Feb-2019 10:59:06 Removing intermediate container a96af1791e41 build 26-Feb-2019 10:59:06 ---> a0ca1ab9bb0f build 26-Feb-2019 10:59:06 Successfully built a0ca1ab9bb0f build 26-Feb-2019 10:59:06 Successfully tagged clowder/extractors-monitor:latest simple 26-Feb-2019 10:59:06 Finished task 'docker build' with result: Success simple 26-Feb-2019 10:59:06 Starting task 'docker push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 26-Feb-2019 10:59:06 Beginning to execute external process for build 'Clowder - pyclowder2 - develop - Default Job #21 (CATS-PYC265-JOB1-21)'\n ... running command line: \n/bin/sh release.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=develop\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_planRepository_1_branchDisplayName=develop\nbamboo_repository_revision_number=10debfa0397ca1231d58a0a7f93b887919d02b82\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC265-JOB1-21\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_repository_157745161_name=pyclowder2\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1\nbamboo_planRepository_1_name=pyclowder2\nbamboo_buildKey=CATS-PYC265-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=develop\nbamboo_repository_157745161_branch_name=develop\nbamboo_planRepository_name=pyclowder2\nbamboo_buildNumber=21\nbamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC265-JOB1-21\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_agentId=143032321\nbamboo_planName=Clowder - pyclowder2 - develop\nbamboo_shortPlanKey=PYC265\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_shortJobKey=JOB1\nbamboo_planRepository_revision=10debfa0397ca1231d58a0a7f93b887919d02b82\nbamboo_buildTimeStamp=2019-02-26T10:47:32.228-06:00\nbamboo_repository_previous_revision_number=66fc7701b866370e2dd10c82ebabd80de793b232\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_repository_157745161_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_3=/home/bamboo/bamboo-agent-home/temp/CATS-PYC265-JOB1-21-ScriptBuildTask-8424336139626930003.sh\nbamboo_planRepository_previousRevision=66fc7701b866370e2dd10c82ebabd80de793b232\nbamboo_repository_157745161_git_username=\nbamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_2=/bin/sh docker.sh\nbamboo_repository_git_branch=develop\nbamboo_buildResultKey=CATS-PYC265-JOB1-21\nbamboo_repository_branch_name=develop\nbamboo_buildPlanName=Clowder - pyclowder2 - develop - Default Job\nbamboo_planRepository_1_revision=10debfa0397ca1231d58a0a7f93b887919d02b82\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=pyclowder2\nbamboo_buildFailed=false\nbamboo_repository_157745161_git_branch=develop\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_branch=develop\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_repository_157745161_previous_revision_number=66fc7701b866370e2dd10c82ebabd80de793b232\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=66fc7701b866370e2dd10c82ebabd80de793b232\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_planRepository_branchDisplayName=develop\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=develop\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-157548561\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_repository_157745161_revision_number=10debfa0397ca1231d58a0a7f93b887919d02b82\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1\nbamboo_planKey=CATS-PYC265\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_1_branchName=develop\n build 26-Feb-2019 10:59:06 Sending build context to Docker daemon 267.8kB build 26-Feb-2019 10:59:06 build 26-Feb-2019 10:59:06 Step 1/9 : FROM ubuntu:16.04 build 26-Feb-2019 10:59:06 ---> 7e87e2b3bf7a build 26-Feb-2019 10:59:06 Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" build 26-Feb-2019 10:59:06 ---> Using cache build 26-Feb-2019 10:59:06 ---> 30f0fa26d340 build 26-Feb-2019 10:59:06 Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* build 26-Feb-2019 10:59:06 ---> Using cache build 26-Feb-2019 10:59:06 ---> 0cb16d4f85af build 26-Feb-2019 10:59:06 Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder build 26-Feb-2019 10:59:06 ---> Using cache build 26-Feb-2019 10:59:06 ---> 830fd0a817ec build 26-Feb-2019 10:59:06 Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/ build 26-Feb-2019 10:59:06 ---> Using cache build 26-Feb-2019 10:59:06 ---> 4132efce4458 build 26-Feb-2019 10:59:06 Step 6/9 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder build 26-Feb-2019 10:59:06 ---> Using cache build 26-Feb-2019 10:59:06 ---> 5b80bd24743a build 26-Feb-2019 10:59:06 Step 7/9 : WORKDIR /home/clowder build 26-Feb-2019 10:59:06 ---> Using cache build 26-Feb-2019 10:59:06 ---> 887f7eea03be build 26-Feb-2019 10:59:06 Step 8/9 : COPY notifications.json /home/clowder build 26-Feb-2019 10:59:06 ---> Using cache build 26-Feb-2019 10:59:06 ---> b7aea83f36a5 build 26-Feb-2019 10:59:06 Step 9/9 : CMD python "./${MAIN_SCRIPT}" build 26-Feb-2019 10:59:06 ---> Using cache build 26-Feb-2019 10:59:06 ---> 4a022a6ba1f6 build 26-Feb-2019 10:59:06 Successfully built 4a022a6ba1f6 build 26-Feb-2019 10:59:06 Successfully tagged clowder/pyclowder:latest build 26-Feb-2019 10:59:07 Sending build context to Docker daemon 266.2kB build 26-Feb-2019 10:59:07 build 26-Feb-2019 10:59:07 Step 1/6 : FROM clowder/pyclowder build 26-Feb-2019 10:59:07 ---> 4a022a6ba1f6 build 26-Feb-2019 10:59:07 Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> 176f52709a9c build 26-Feb-2019 10:59:07 Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> b0fa1abda2bc build 26-Feb-2019 10:59:07 Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> b2d8b99c4827 build 26-Feb-2019 10:59:07 Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> 22265b1f4a89 build 26-Feb-2019 10:59:07 Step 6/6 : ONBUILD ADD . /home/clowder/ build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> 44b8722e2785 build 26-Feb-2019 10:59:07 Successfully built 44b8722e2785 build 26-Feb-2019 10:59:07 Successfully tagged clowder/pyclowder:onbuild build 26-Feb-2019 10:59:07 Sending build context to Docker daemon 12.8kB build 26-Feb-2019 10:59:07 build 26-Feb-2019 10:59:07 Step 1/5 : FROM clowder/pyclowder:onbuild build 26-Feb-2019 10:59:07 # Executing 5 build triggers build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> 15539ef84545 build 26-Feb-2019 10:59:07 Step 2/5 : ENV MAIN_SCRIPT="binary_extractor.py" RABBITMQ_QUEUE="" IMAGE_BINARY="" IMAGE_TYPE="" IMAGE_THUMBNAIL_COMMAND="" IMAGE_PREVIEW_COMMAND="" PREVIEW_BINARY="" PREVIEW_TYPE="" PREVIEW_COMMAND="" build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> 01d1b8e27971 build 26-Feb-2019 10:59:07 Step 3/5 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> bb9a097acb7d build 26-Feb-2019 10:59:07 Step 4/5 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> 841be5835db7 build 26-Feb-2019 10:59:07 Step 5/5 : ONBUILD COPY extractor_info.json /home/clowder/ build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> a018d293cee7 build 26-Feb-2019 10:59:07 Successfully built a018d293cee7 build 26-Feb-2019 10:59:07 Successfully tagged clowder/extractors-binary-preview:onbuild build 26-Feb-2019 10:59:07 Sending build context to Docker daemon 6.656kB build 26-Feb-2019 10:59:07 build 26-Feb-2019 10:59:07 Step 1/9 : FROM clowder/pyclowder:onbuild build 26-Feb-2019 10:59:07 # Executing 5 build triggers build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> 27c7f794c655 build 26-Feb-2019 10:59:07 Step 2/9 : ENV EXTRACTION_FUNC="" build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> e20e3221028c build 26-Feb-2019 10:59:07 Step 3/9 : ENV EXTRACTION_MODULE="" build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> 3d8e2bae6937 build 26-Feb-2019 10:59:07 Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> a89a37886536 build 26-Feb-2019 10:59:07 Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> 4a85c52b89aa build 26-Feb-2019 10:59:07 Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> 6e77c8448344 build 26-Feb-2019 10:59:07 Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> f5bc265b788f build 26-Feb-2019 10:59:07 Step 8/9 : ONBUILD ADD . /home/clowder/ build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> fb5450a47f29 build 26-Feb-2019 10:59:07 Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> 1f2994287c8e build 26-Feb-2019 10:59:07 Successfully built 1f2994287c8e build 26-Feb-2019 10:59:07 Successfully tagged clowder/extractors-simple-extractor:onbuild build 26-Feb-2019 10:59:07 Sending build context to Docker daemon 13.31kB build 26-Feb-2019 10:59:07 build 26-Feb-2019 10:59:07 Step 1/10 : FROM clowder/pyclowder:latest build 26-Feb-2019 10:59:07 ---> 4a022a6ba1f6 build 26-Feb-2019 10:59:07 Step 2/10 : ENV R_SCRIPT="" R_FUNCTION="" build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> d3c7d7713554 build 26-Feb-2019 10:59:07 Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> f112aceab733 build 26-Feb-2019 10:59:07 Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/ build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> 68be831ba35b build 26-Feb-2019 10:59:07 Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> f1688e00c7e6 build 26-Feb-2019 10:59:07 Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> a59b1f1b040a build 26-Feb-2019 10:59:07 Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> ee0dcabefab6 build 26-Feb-2019 10:59:07 Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> f438e036b2a2 build 26-Feb-2019 10:59:07 Step 9/10 : ONBUILD ADD . /home/clowder/ build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> bdb37fcd5a12 build 26-Feb-2019 10:59:07 Step 10/10 : CMD python r_extractor.py build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> c11fc33667d6 build 26-Feb-2019 10:59:07 Successfully built c11fc33667d6 build 26-Feb-2019 10:59:07 Successfully tagged clowder/extractors-simple-r-extractor:onbuild build 26-Feb-2019 10:59:07 Sending build context to Docker daemon 267.8kB build 26-Feb-2019 10:59:07 build 26-Feb-2019 10:59:07 Step 1/9 : FROM ubuntu:16.04 build 26-Feb-2019 10:59:07 ---> 7e87e2b3bf7a build 26-Feb-2019 10:59:07 Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> 30f0fa26d340 build 26-Feb-2019 10:59:07 Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> 0cb16d4f85af build 26-Feb-2019 10:59:07 Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> 830fd0a817ec build 26-Feb-2019 10:59:07 Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/ build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> 4132efce4458 build 26-Feb-2019 10:59:07 Step 6/9 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> 5b80bd24743a build 26-Feb-2019 10:59:07 Step 7/9 : WORKDIR /home/clowder build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> 887f7eea03be build 26-Feb-2019 10:59:07 Step 8/9 : COPY notifications.json /home/clowder build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> b7aea83f36a5 build 26-Feb-2019 10:59:07 Step 9/9 : CMD python "./${MAIN_SCRIPT}" build 26-Feb-2019 10:59:07 ---> Using cache build 26-Feb-2019 10:59:07 ---> 4a022a6ba1f6 build 26-Feb-2019 10:59:07 [Warning] One or more build-args [PYTHON_VERSION] were not consumed build 26-Feb-2019 10:59:07 Successfully built 4a022a6ba1f6 build 26-Feb-2019 10:59:08 Successfully tagged clowder/pyclowder-python3:latest build 26-Feb-2019 10:59:08 Sending build context to Docker daemon 266.2kB build 26-Feb-2019 10:59:08 build 26-Feb-2019 10:59:08 Step 1/6 : FROM clowder/pyclowder build 26-Feb-2019 10:59:08 ---> 4a022a6ba1f6 build 26-Feb-2019 10:59:08 Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> 176f52709a9c build 26-Feb-2019 10:59:08 Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> b0fa1abda2bc build 26-Feb-2019 10:59:08 Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> b2d8b99c4827 build 26-Feb-2019 10:59:08 Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> 22265b1f4a89 build 26-Feb-2019 10:59:08 Step 6/6 : ONBUILD ADD . /home/clowder/ build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> 44b8722e2785 build 26-Feb-2019 10:59:08 [Warning] One or more build-args [PYTHON_VERSION] were not consumed build 26-Feb-2019 10:59:08 Successfully built 44b8722e2785 build 26-Feb-2019 10:59:08 Successfully tagged clowder/pyclowder-python3:onbuild build 26-Feb-2019 10:59:08 Sending build context to Docker daemon 6.656kB build 26-Feb-2019 10:59:08 build 26-Feb-2019 10:59:08 Step 1/9 : FROM clowder/pyclowder:onbuild build 26-Feb-2019 10:59:08 # Executing 5 build triggers build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> 27c7f794c655 build 26-Feb-2019 10:59:08 Step 2/9 : ENV EXTRACTION_FUNC="" build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> e20e3221028c build 26-Feb-2019 10:59:08 Step 3/9 : ENV EXTRACTION_MODULE="" build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> 3d8e2bae6937 build 26-Feb-2019 10:59:08 Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> a89a37886536 build 26-Feb-2019 10:59:08 Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> 4a85c52b89aa build 26-Feb-2019 10:59:08 Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> 6e77c8448344 build 26-Feb-2019 10:59:08 Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> f5bc265b788f build 26-Feb-2019 10:59:08 Step 8/9 : ONBUILD ADD . /home/clowder/ build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> fb5450a47f29 build 26-Feb-2019 10:59:08 Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> 1f2994287c8e build 26-Feb-2019 10:59:08 [Warning] One or more build-args [PYTHON_VERSION] were not consumed build 26-Feb-2019 10:59:08 Successfully built 1f2994287c8e build 26-Feb-2019 10:59:08 Successfully tagged clowder/extractors-simple-extractor-python3:onbuild build 26-Feb-2019 10:59:08 Sending build context to Docker daemon 13.31kB build 26-Feb-2019 10:59:08 build 26-Feb-2019 10:59:08 Step 1/10 : FROM clowder/pyclowder:latest build 26-Feb-2019 10:59:08 ---> 4a022a6ba1f6 build 26-Feb-2019 10:59:08 Step 2/10 : ENV R_SCRIPT="" R_FUNCTION="" build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> d3c7d7713554 build 26-Feb-2019 10:59:08 Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> f112aceab733 build 26-Feb-2019 10:59:08 Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/ build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> 68be831ba35b build 26-Feb-2019 10:59:08 Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> f1688e00c7e6 build 26-Feb-2019 10:59:08 Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> a59b1f1b040a build 26-Feb-2019 10:59:08 Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> ee0dcabefab6 build 26-Feb-2019 10:59:08 Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> f438e036b2a2 build 26-Feb-2019 10:59:08 Step 9/10 : ONBUILD ADD . /home/clowder/ build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> bdb37fcd5a12 build 26-Feb-2019 10:59:08 Step 10/10 : CMD python r_extractor.py build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> c11fc33667d6 build 26-Feb-2019 10:59:08 [Warning] One or more build-args [PYTHON_VERSION] were not consumed build 26-Feb-2019 10:59:08 Successfully built c11fc33667d6 build 26-Feb-2019 10:59:08 Successfully tagged clowder/extractors-simple-r-extractor-python3:onbuild build 26-Feb-2019 10:59:08 Sending build context to Docker daemon 9.216kB build 26-Feb-2019 10:59:08 build 26-Feb-2019 10:59:08 Step 1/2 : FROM clowder/pyclowder:onbuild build 26-Feb-2019 10:59:08 # Executing 5 build triggers build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> 8d2d3f90da3e build 26-Feb-2019 10:59:08 Step 2/2 : ENV MAIN_SCRIPT="wordcount.py" build 26-Feb-2019 10:59:08 ---> Using cache build 26-Feb-2019 10:59:08 ---> 0fd85c37ae5d build 26-Feb-2019 10:59:08 Successfully built 0fd85c37ae5d build 26-Feb-2019 10:59:08 Successfully tagged clowder/extractors-wordcount:latest build 26-Feb-2019 10:59:09 Sending build context to Docker daemon 5.12kB build 26-Feb-2019 10:59:09 build 26-Feb-2019 10:59:09 Step 1/3 : FROM clowder/extractors-simple-extractor:onbuild build 26-Feb-2019 10:59:09 # Executing 5 build triggers build 26-Feb-2019 10:59:09 ---> Using cache build 26-Feb-2019 10:59:09 ---> Using cache build 26-Feb-2019 10:59:09 ---> Using cache build 26-Feb-2019 10:59:09 ---> Using cache build 26-Feb-2019 10:59:09 ---> Using cache build 26-Feb-2019 10:59:09 ---> d6b171134da1 build 26-Feb-2019 10:59:09 Step 2/3 : ENV EXTRACTION_FUNC="wordcount" build 26-Feb-2019 10:59:09 ---> Using cache build 26-Feb-2019 10:59:09 ---> 2281ab54e8d7 build 26-Feb-2019 10:59:09 Step 3/3 : ENV EXTRACTION_MODULE="wordcount" build 26-Feb-2019 10:59:09 ---> Using cache build 26-Feb-2019 10:59:09 ---> 543abf85aa73 build 26-Feb-2019 10:59:09 Successfully built 543abf85aa73 build 26-Feb-2019 10:59:09 Successfully tagged clowder/extractors-wordcount-simple-extractor:latest build 26-Feb-2019 10:59:09 Sending build context to Docker daemon 5.12kB build 26-Feb-2019 10:59:09 build 26-Feb-2019 10:59:09 Step 1/2 : FROM clowder/extractors-simple-r-extractor:onbuild build 26-Feb-2019 10:59:09 # Executing 5 build triggers build 26-Feb-2019 10:59:09 ---> Using cache build 26-Feb-2019 10:59:09 ---> Using cache build 26-Feb-2019 10:59:09 ---> Using cache build 26-Feb-2019 10:59:09 ---> Using cache build 26-Feb-2019 10:59:09 ---> Using cache build 26-Feb-2019 10:59:09 ---> 8d238571b29b build 26-Feb-2019 10:59:09 Step 2/2 : ENV R_SCRIPT="wordcount.R" R_FUNCTION="process_file" build 26-Feb-2019 10:59:09 ---> Using cache build 26-Feb-2019 10:59:09 ---> 91f72837a87f build 26-Feb-2019 10:59:09 Successfully built 91f72837a87f build 26-Feb-2019 10:59:09 Successfully tagged clowder/extractors-wordcount-simple-r-extractor:latest build 26-Feb-2019 10:59:09 Sending build context to Docker daemon 8.192kB build 26-Feb-2019 10:59:09 build 26-Feb-2019 10:59:09 Step 1/7 : FROM python:3.5 build 26-Feb-2019 10:59:09 ---> 32184312b88b build 26-Feb-2019 10:59:09 Step 2/7 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq/%2F" build 26-Feb-2019 10:59:09 ---> Using cache build 26-Feb-2019 10:59:09 ---> b3829af92c14 build 26-Feb-2019 10:59:09 Step 3/7 : EXPOSE 9999 build 26-Feb-2019 10:59:09 ---> Using cache build 26-Feb-2019 10:59:09 ---> 2804633ccad8 build 26-Feb-2019 10:59:09 Step 4/7 : RUN pip install pika==0.11.2 requests==2.18.4 build 26-Feb-2019 10:59:09 ---> Using cache build 26-Feb-2019 10:59:09 ---> 8c9582a51f38 build 26-Feb-2019 10:59:09 Step 5/7 : WORKDIR /src build 26-Feb-2019 10:59:09 ---> Using cache build 26-Feb-2019 10:59:09 ---> e53d9d551634 build 26-Feb-2019 10:59:09 Step 6/7 : COPY monitor.py /src/ build 26-Feb-2019 10:59:09 ---> Using cache build 26-Feb-2019 10:59:09 ---> f442a663424e build 26-Feb-2019 10:59:09 Step 7/7 : CMD python monitor.py build 26-Feb-2019 10:59:09 ---> Using cache build 26-Feb-2019 10:59:09 ---> a0ca1ab9bb0f build 26-Feb-2019 10:59:09 Successfully built a0ca1ab9bb0f build 26-Feb-2019 10:59:09 Successfully tagged clowder/extractors-monitor:latest build 26-Feb-2019 10:59:09 The push refers to repository [docker.io/clowder/pyclowder] build 26-Feb-2019 10:59:09 decb9a7dc779: Preparing build 26-Feb-2019 10:59:09 40c741983680: Preparing build 26-Feb-2019 10:59:09 46609d37cd44: Preparing build 26-Feb-2019 10:59:09 9340d309f599: Preparing build 26-Feb-2019 10:59:09 3c7cf46838f8: Preparing build 26-Feb-2019 10:59:09 0bf237dd105f: Preparing build 26-Feb-2019 10:59:09 68dda0c9a8cd: Preparing build 26-Feb-2019 10:59:09 f67191ae09b8: Preparing build 26-Feb-2019 10:59:09 b2fd8b4c3da7: Preparing build 26-Feb-2019 10:59:09 0de2edf7bff4: Preparing build 26-Feb-2019 10:59:09 68dda0c9a8cd: Waiting build 26-Feb-2019 10:59:09 f67191ae09b8: Waiting build 26-Feb-2019 10:59:09 0bf237dd105f: Waiting build 26-Feb-2019 10:59:09 0de2edf7bff4: Waiting build 26-Feb-2019 10:59:11 40c741983680: Pushed build 26-Feb-2019 10:59:11 9340d309f599: Pushed build 26-Feb-2019 10:59:11 3c7cf46838f8: Pushed build 26-Feb-2019 10:59:11 f67191ae09b8: Layer already exists build 26-Feb-2019 10:59:11 68dda0c9a8cd: Layer already exists build 26-Feb-2019 10:59:11 b2fd8b4c3da7: Layer already exists build 26-Feb-2019 10:59:11 0de2edf7bff4: Layer already exists build 26-Feb-2019 10:59:11 46609d37cd44: Pushed build 26-Feb-2019 10:59:12 decb9a7dc779: Pushed build 26-Feb-2019 10:59:15 0bf237dd105f: Pushed build 26-Feb-2019 10:59:17 develop: digest: sha256:6c8224c8f9df9740e6f389dbe62950f21daefdaa25b77ef389979613b833e1ce size: 2404 build 26-Feb-2019 10:59:17 The push refers to repository [docker.io/clowder/pyclowder-python3] build 26-Feb-2019 10:59:17 decb9a7dc779: Preparing build 26-Feb-2019 10:59:17 40c741983680: Preparing build 26-Feb-2019 10:59:17 46609d37cd44: Preparing build 26-Feb-2019 10:59:17 9340d309f599: Preparing build 26-Feb-2019 10:59:17 3c7cf46838f8: Preparing build 26-Feb-2019 10:59:17 0bf237dd105f: Preparing build 26-Feb-2019 10:59:17 68dda0c9a8cd: Preparing build 26-Feb-2019 10:59:17 f67191ae09b8: Preparing build 26-Feb-2019 10:59:17 b2fd8b4c3da7: Preparing build 26-Feb-2019 10:59:17 0de2edf7bff4: Preparing build 26-Feb-2019 10:59:17 0bf237dd105f: Waiting build 26-Feb-2019 10:59:17 68dda0c9a8cd: Waiting build 26-Feb-2019 10:59:17 f67191ae09b8: Waiting build 26-Feb-2019 10:59:17 b2fd8b4c3da7: Waiting build 26-Feb-2019 10:59:17 0de2edf7bff4: Waiting build 26-Feb-2019 10:59:18 46609d37cd44: Mounted from clowder/pyclowder build 26-Feb-2019 10:59:18 40c741983680: Mounted from clowder/pyclowder build 26-Feb-2019 10:59:18 3c7cf46838f8: Mounted from clowder/pyclowder build 26-Feb-2019 10:59:18 9340d309f599: Mounted from clowder/pyclowder build 26-Feb-2019 10:59:18 decb9a7dc779: Mounted from clowder/pyclowder build 26-Feb-2019 10:59:19 68dda0c9a8cd: Layer already exists build 26-Feb-2019 10:59:19 f67191ae09b8: Layer already exists build 26-Feb-2019 10:59:19 b2fd8b4c3da7: Layer already exists build 26-Feb-2019 10:59:19 0de2edf7bff4: Layer already exists build 26-Feb-2019 10:59:20 0bf237dd105f: Mounted from clowder/pyclowder build 26-Feb-2019 10:59:21 develop: digest: sha256:6c8224c8f9df9740e6f389dbe62950f21daefdaa25b77ef389979613b833e1ce size: 2404 build 26-Feb-2019 10:59:23 The push refers to repository [docker.io/clowder/extractors-monitor] build 26-Feb-2019 10:59:23 a6403591acf4: Preparing build 26-Feb-2019 10:59:23 a4d5c32d9d4f: Preparing build 26-Feb-2019 10:59:23 f0a4896107c7: Preparing build 26-Feb-2019 10:59:23 dfbc04200d06: Preparing build 26-Feb-2019 10:59:23 edc721821408: Preparing build 26-Feb-2019 10:59:23 0d8f32fa54df: Preparing build 26-Feb-2019 10:59:23 14c77983a1cf: Preparing build 26-Feb-2019 10:59:23 a22a5ac18042: Preparing build 26-Feb-2019 10:59:23 6257fa9f9597: Preparing build 26-Feb-2019 10:59:23 578414b395b9: Preparing build 26-Feb-2019 10:59:23 abc3250a6c7f: Preparing build 26-Feb-2019 10:59:23 13d5529fd232: Preparing build 26-Feb-2019 10:59:23 0d8f32fa54df: Waiting build 26-Feb-2019 10:59:23 14c77983a1cf: Waiting build 26-Feb-2019 10:59:23 a22a5ac18042: Waiting build 26-Feb-2019 10:59:23 6257fa9f9597: Waiting build 26-Feb-2019 10:59:23 578414b395b9: Waiting build 26-Feb-2019 10:59:23 abc3250a6c7f: Waiting build 26-Feb-2019 10:59:23 13d5529fd232: Waiting build 26-Feb-2019 10:59:23 edc721821408: Layer already exists build 26-Feb-2019 10:59:24 dfbc04200d06: Layer already exists build 26-Feb-2019 10:59:24 0d8f32fa54df: Layer already exists build 26-Feb-2019 10:59:24 14c77983a1cf: Layer already exists build 26-Feb-2019 10:59:24 a22a5ac18042: Layer already exists build 26-Feb-2019 10:59:24 6257fa9f9597: Layer already exists build 26-Feb-2019 10:59:24 578414b395b9: Layer already exists build 26-Feb-2019 10:59:24 abc3250a6c7f: Layer already exists build 26-Feb-2019 10:59:24 a4d5c32d9d4f: Pushed build 26-Feb-2019 10:59:25 13d5529fd232: Layer already exists build 26-Feb-2019 10:59:25 a6403591acf4: Pushed build 26-Feb-2019 10:59:27 f0a4896107c7: Pushed build 26-Feb-2019 10:59:29 develop: digest: sha256:0bc087e988b3e82296e9459bf2451826bc51ed977927cd08686b917fb94d63d1 size: 2843 build 26-Feb-2019 10:59:29 The push refers to repository [docker.io/clowder/extractors-wordcount] build 26-Feb-2019 10:59:29 70d2f45c2086: Preparing build 26-Feb-2019 10:59:29 bbcd6c5bd1aa: Preparing build 26-Feb-2019 10:59:29 e512721b64c7: Preparing build 26-Feb-2019 10:59:29 decb9a7dc779: Preparing build 26-Feb-2019 10:59:29 40c741983680: Preparing build 26-Feb-2019 10:59:29 46609d37cd44: Preparing build 26-Feb-2019 10:59:29 9340d309f599: Preparing build 26-Feb-2019 10:59:29 3c7cf46838f8: Preparing build 26-Feb-2019 10:59:29 0bf237dd105f: Preparing build 26-Feb-2019 10:59:29 68dda0c9a8cd: Preparing build 26-Feb-2019 10:59:29 f67191ae09b8: Preparing build 26-Feb-2019 10:59:29 b2fd8b4c3da7: Preparing build 26-Feb-2019 10:59:29 0de2edf7bff4: Preparing build 26-Feb-2019 10:59:29 3c7cf46838f8: Waiting build 26-Feb-2019 10:59:29 0bf237dd105f: Waiting build 26-Feb-2019 10:59:29 68dda0c9a8cd: Waiting build 26-Feb-2019 10:59:29 f67191ae09b8: Waiting build 26-Feb-2019 10:59:29 46609d37cd44: Waiting build 26-Feb-2019 10:59:29 b2fd8b4c3da7: Waiting build 26-Feb-2019 10:59:29 0de2edf7bff4: Waiting build 26-Feb-2019 10:59:29 9340d309f599: Waiting build 26-Feb-2019 10:59:30 40c741983680: Mounted from clowder/pyclowder-python3 build 26-Feb-2019 10:59:30 decb9a7dc779: Mounted from clowder/pyclowder-python3 build 26-Feb-2019 10:59:31 46609d37cd44: Mounted from clowder/pyclowder-python3 build 26-Feb-2019 10:59:31 e512721b64c7: Pushed build 26-Feb-2019 10:59:31 9340d309f599: Mounted from clowder/pyclowder-python3 build 26-Feb-2019 10:59:31 bbcd6c5bd1aa: Pushed build 26-Feb-2019 10:59:32 f67191ae09b8: Layer already exists build 26-Feb-2019 10:59:32 68dda0c9a8cd: Layer already exists build 26-Feb-2019 10:59:32 3c7cf46838f8: Mounted from clowder/pyclowder-python3 build 26-Feb-2019 10:59:32 70d2f45c2086: Pushed build 26-Feb-2019 10:59:32 b2fd8b4c3da7: Layer already exists build 26-Feb-2019 10:59:32 0de2edf7bff4: Layer already exists build 26-Feb-2019 10:59:32 0bf237dd105f: Mounted from clowder/pyclowder-python3 build 26-Feb-2019 10:59:35 develop: digest: sha256:c54cab96964f9a5cbd0a217bf872074ed5e147f3412bca8012d22ab3f5cfa3c5 size: 3026 build 26-Feb-2019 10:59:35 The push refers to repository [docker.io/clowder/pyclowder] build 26-Feb-2019 10:59:35 decb9a7dc779: Preparing build 26-Feb-2019 10:59:35 40c741983680: Preparing build 26-Feb-2019 10:59:35 46609d37cd44: Preparing build 26-Feb-2019 10:59:35 9340d309f599: Preparing build 26-Feb-2019 10:59:35 3c7cf46838f8: Preparing build 26-Feb-2019 10:59:35 0bf237dd105f: Preparing build 26-Feb-2019 10:59:35 68dda0c9a8cd: Preparing build 26-Feb-2019 10:59:35 f67191ae09b8: Preparing build 26-Feb-2019 10:59:35 b2fd8b4c3da7: Preparing build 26-Feb-2019 10:59:35 0de2edf7bff4: Preparing build 26-Feb-2019 10:59:35 68dda0c9a8cd: Waiting build 26-Feb-2019 10:59:35 f67191ae09b8: Waiting build 26-Feb-2019 10:59:35 b2fd8b4c3da7: Waiting build 26-Feb-2019 10:59:35 0de2edf7bff4: Waiting build 26-Feb-2019 10:59:35 0bf237dd105f: Waiting build 26-Feb-2019 10:59:35 9340d309f599: Layer already exists build 26-Feb-2019 10:59:35 46609d37cd44: Layer already exists build 26-Feb-2019 10:59:35 3c7cf46838f8: Layer already exists build 26-Feb-2019 10:59:35 decb9a7dc779: Layer already exists build 26-Feb-2019 10:59:35 40c741983680: Layer already exists build 26-Feb-2019 10:59:36 0bf237dd105f: Layer already exists build 26-Feb-2019 10:59:36 68dda0c9a8cd: Layer already exists build 26-Feb-2019 10:59:36 f67191ae09b8: Layer already exists build 26-Feb-2019 10:59:36 b2fd8b4c3da7: Layer already exists build 26-Feb-2019 10:59:36 0de2edf7bff4: Layer already exists build 26-Feb-2019 10:59:37 develop-onbuild: digest: sha256:ebdb2a847325a5b07716955a9da5ad6f3708db2e01b5f820555f50e3c0640134 size: 2404 build 26-Feb-2019 10:59:38 The push refers to repository [docker.io/clowder/pyclowder-python3] build 26-Feb-2019 10:59:38 decb9a7dc779: Preparing build 26-Feb-2019 10:59:38 40c741983680: Preparing build 26-Feb-2019 10:59:38 46609d37cd44: Preparing build 26-Feb-2019 10:59:38 9340d309f599: Preparing build 26-Feb-2019 10:59:38 3c7cf46838f8: Preparing build 26-Feb-2019 10:59:38 0bf237dd105f: Preparing build 26-Feb-2019 10:59:38 68dda0c9a8cd: Preparing build 26-Feb-2019 10:59:38 f67191ae09b8: Preparing build 26-Feb-2019 10:59:38 b2fd8b4c3da7: Preparing build 26-Feb-2019 10:59:38 0de2edf7bff4: Preparing build 26-Feb-2019 10:59:38 68dda0c9a8cd: Waiting build 26-Feb-2019 10:59:38 f67191ae09b8: Waiting build 26-Feb-2019 10:59:38 b2fd8b4c3da7: Waiting build 26-Feb-2019 10:59:38 0de2edf7bff4: Waiting build 26-Feb-2019 10:59:38 0bf237dd105f: Waiting build 26-Feb-2019 10:59:38 9340d309f599: Layer already exists build 26-Feb-2019 10:59:38 decb9a7dc779: Layer already exists build 26-Feb-2019 10:59:38 40c741983680: Layer already exists build 26-Feb-2019 10:59:38 3c7cf46838f8: Layer already exists build 26-Feb-2019 10:59:38 46609d37cd44: Layer already exists build 26-Feb-2019 10:59:38 f67191ae09b8: Layer already exists build 26-Feb-2019 10:59:38 0bf237dd105f: Layer already exists build 26-Feb-2019 10:59:38 68dda0c9a8cd: Layer already exists build 26-Feb-2019 10:59:38 b2fd8b4c3da7: Layer already exists build 26-Feb-2019 10:59:38 0de2edf7bff4: Layer already exists build 26-Feb-2019 10:59:40 develop-onbuild: digest: sha256:ebdb2a847325a5b07716955a9da5ad6f3708db2e01b5f820555f50e3c0640134 size: 2404 build 26-Feb-2019 10:59:40 The push refers to repository [docker.io/clowder/extractors-binary-preview] build 26-Feb-2019 10:59:40 597d1344a21c: Preparing build 26-Feb-2019 10:59:40 f71bf353695e: Preparing build 26-Feb-2019 10:59:40 493f63676ede: Preparing build 26-Feb-2019 10:59:40 decb9a7dc779: Preparing build 26-Feb-2019 10:59:40 40c741983680: Preparing build 26-Feb-2019 10:59:40 46609d37cd44: Preparing build 26-Feb-2019 10:59:40 9340d309f599: Preparing build 26-Feb-2019 10:59:40 3c7cf46838f8: Preparing build 26-Feb-2019 10:59:40 0bf237dd105f: Preparing build 26-Feb-2019 10:59:40 68dda0c9a8cd: Preparing build 26-Feb-2019 10:59:40 f67191ae09b8: Preparing build 26-Feb-2019 10:59:40 9340d309f599: Waiting build 26-Feb-2019 10:59:40 3c7cf46838f8: Waiting build 26-Feb-2019 10:59:40 0bf237dd105f: Waiting build 26-Feb-2019 10:59:40 46609d37cd44: Waiting build 26-Feb-2019 10:59:40 68dda0c9a8cd: Waiting build 26-Feb-2019 10:59:40 b2fd8b4c3da7: Preparing build 26-Feb-2019 10:59:40 0de2edf7bff4: Preparing build 26-Feb-2019 10:59:40 f67191ae09b8: Waiting build 26-Feb-2019 10:59:40 b2fd8b4c3da7: Waiting build 26-Feb-2019 10:59:40 0de2edf7bff4: Waiting build 26-Feb-2019 10:59:41 40c741983680: Mounted from clowder/extractors-wordcount build 26-Feb-2019 10:59:41 decb9a7dc779: Mounted from clowder/extractors-wordcount build 26-Feb-2019 10:59:42 46609d37cd44: Mounted from clowder/extractors-wordcount build 26-Feb-2019 10:59:42 f71bf353695e: Pushed build 26-Feb-2019 10:59:42 597d1344a21c: Pushed build 26-Feb-2019 10:59:42 9340d309f599: Mounted from clowder/extractors-wordcount build 26-Feb-2019 10:59:42 493f63676ede: Pushed build 26-Feb-2019 10:59:42 68dda0c9a8cd: Layer already exists build 26-Feb-2019 10:59:42 0de2edf7bff4: Layer already exists build 26-Feb-2019 10:59:42 3c7cf46838f8: Mounted from clowder/extractors-wordcount build 26-Feb-2019 10:59:42 f67191ae09b8: Layer already exists build 26-Feb-2019 10:59:42 b2fd8b4c3da7: Layer already exists build 26-Feb-2019 10:59:42 0bf237dd105f: Mounted from clowder/extractors-wordcount build 26-Feb-2019 10:59:44 develop-onbuild: digest: sha256:46a7c903644e6068f182d50f99e70156efc2d2a17eb837a794cfd49d712111c6 size: 3026 build 26-Feb-2019 10:59:44 The push refers to repository [docker.io/clowder/extractors-simple-extractor] build 26-Feb-2019 10:59:45 9174e72ef537: Preparing build 26-Feb-2019 10:59:45 d05a17916d04: Preparing build 26-Feb-2019 10:59:45 b59d4be2587b: Preparing build 26-Feb-2019 10:59:45 decb9a7dc779: Preparing build 26-Feb-2019 10:59:45 40c741983680: Preparing build 26-Feb-2019 10:59:45 46609d37cd44: Preparing build 26-Feb-2019 10:59:45 9340d309f599: Preparing build 26-Feb-2019 10:59:45 3c7cf46838f8: Preparing build 26-Feb-2019 10:59:45 0bf237dd105f: Preparing build 26-Feb-2019 10:59:45 68dda0c9a8cd: Preparing build 26-Feb-2019 10:59:45 f67191ae09b8: Preparing build 26-Feb-2019 10:59:45 b2fd8b4c3da7: Preparing build 26-Feb-2019 10:59:45 0de2edf7bff4: Preparing build 26-Feb-2019 10:59:45 46609d37cd44: Waiting build 26-Feb-2019 10:59:45 9340d309f599: Waiting build 26-Feb-2019 10:59:45 3c7cf46838f8: Waiting build 26-Feb-2019 10:59:45 0bf237dd105f: Waiting build 26-Feb-2019 10:59:45 68dda0c9a8cd: Waiting build 26-Feb-2019 10:59:45 f67191ae09b8: Waiting build 26-Feb-2019 10:59:45 b2fd8b4c3da7: Waiting build 26-Feb-2019 10:59:45 0de2edf7bff4: Waiting build 26-Feb-2019 10:59:45 decb9a7dc779: Mounted from clowder/extractors-binary-preview build 26-Feb-2019 10:59:45 40c741983680: Mounted from clowder/extractors-binary-preview build 26-Feb-2019 10:59:46 46609d37cd44: Mounted from clowder/extractors-binary-preview build 26-Feb-2019 10:59:46 d05a17916d04: Pushed build 26-Feb-2019 10:59:46 9174e72ef537: Pushed build 26-Feb-2019 10:59:46 b59d4be2587b: Pushed build 26-Feb-2019 10:59:46 9340d309f599: Mounted from clowder/extractors-binary-preview build 26-Feb-2019 10:59:47 68dda0c9a8cd: Layer already exists build 26-Feb-2019 10:59:47 f67191ae09b8: Layer already exists build 26-Feb-2019 10:59:47 b2fd8b4c3da7: Layer already exists build 26-Feb-2019 10:59:47 3c7cf46838f8: Mounted from clowder/extractors-binary-preview build 26-Feb-2019 10:59:47 0de2edf7bff4: Layer already exists build 26-Feb-2019 10:59:47 0bf237dd105f: Mounted from clowder/extractors-binary-preview build 26-Feb-2019 10:59:49 develop-onbuild: digest: sha256:d4adbf2272c35b8aa9c4bdbe2a57d59849b6ce5ef9c1b6dba289b9816d864f83 size: 3027 build 26-Feb-2019 10:59:49 The push refers to repository [docker.io/clowder/extractors-simple-extractor-python3] build 26-Feb-2019 10:59:49 9174e72ef537: Preparing build 26-Feb-2019 10:59:49 d05a17916d04: Preparing build 26-Feb-2019 10:59:49 b59d4be2587b: Preparing build 26-Feb-2019 10:59:49 decb9a7dc779: Preparing build 26-Feb-2019 10:59:49 40c741983680: Preparing build 26-Feb-2019 10:59:49 46609d37cd44: Preparing build 26-Feb-2019 10:59:49 9340d309f599: Preparing build 26-Feb-2019 10:59:49 3c7cf46838f8: Preparing build 26-Feb-2019 10:59:49 0bf237dd105f: Preparing build 26-Feb-2019 10:59:49 68dda0c9a8cd: Preparing build 26-Feb-2019 10:59:49 f67191ae09b8: Preparing build 26-Feb-2019 10:59:49 b2fd8b4c3da7: Preparing build 26-Feb-2019 10:59:49 0de2edf7bff4: Preparing build 26-Feb-2019 10:59:49 46609d37cd44: Waiting build 26-Feb-2019 10:59:49 9340d309f599: Waiting build 26-Feb-2019 10:59:49 3c7cf46838f8: Waiting build 26-Feb-2019 10:59:49 0bf237dd105f: Waiting build 26-Feb-2019 10:59:49 68dda0c9a8cd: Waiting build 26-Feb-2019 10:59:49 f67191ae09b8: Waiting build 26-Feb-2019 10:59:49 b2fd8b4c3da7: Waiting build 26-Feb-2019 10:59:49 0de2edf7bff4: Waiting build 26-Feb-2019 10:59:50 decb9a7dc779: Mounted from clowder/extractors-simple-extractor build 26-Feb-2019 10:59:50 d05a17916d04: Mounted from clowder/extractors-simple-extractor build 26-Feb-2019 10:59:50 b59d4be2587b: Mounted from clowder/extractors-simple-extractor build 26-Feb-2019 10:59:50 9174e72ef537: Mounted from clowder/extractors-simple-extractor build 26-Feb-2019 10:59:51 40c741983680: Mounted from clowder/extractors-simple-extractor build 26-Feb-2019 10:59:51 68dda0c9a8cd: Layer already exists build 26-Feb-2019 10:59:51 46609d37cd44: Mounted from clowder/extractors-simple-extractor build 26-Feb-2019 10:59:51 9340d309f599: Mounted from clowder/extractors-simple-extractor build 26-Feb-2019 10:59:51 3c7cf46838f8: Mounted from clowder/extractors-simple-extractor build 26-Feb-2019 10:59:52 f67191ae09b8: Layer already exists build 26-Feb-2019 10:59:52 0bf237dd105f: Mounted from clowder/extractors-simple-extractor build 26-Feb-2019 10:59:52 b2fd8b4c3da7: Layer already exists build 26-Feb-2019 10:59:52 0de2edf7bff4: Layer already exists build 26-Feb-2019 10:59:53 develop-onbuild: digest: sha256:d4adbf2272c35b8aa9c4bdbe2a57d59849b6ce5ef9c1b6dba289b9816d864f83 size: 3027 build 26-Feb-2019 10:59:53 The push refers to repository [docker.io/clowder/extractors-simple-r-extractor] build 26-Feb-2019 10:59:54 a1d30e032fe7: Preparing build 26-Feb-2019 10:59:54 50c3703cde42: Preparing build 26-Feb-2019 10:59:54 decb9a7dc779: Preparing build 26-Feb-2019 10:59:54 40c741983680: Preparing build 26-Feb-2019 10:59:54 46609d37cd44: Preparing build 26-Feb-2019 10:59:54 9340d309f599: Preparing build 26-Feb-2019 10:59:54 3c7cf46838f8: Preparing build 26-Feb-2019 10:59:54 0bf237dd105f: Preparing build 26-Feb-2019 10:59:54 68dda0c9a8cd: Preparing build 26-Feb-2019 10:59:54 f67191ae09b8: Preparing build 26-Feb-2019 10:59:54 b2fd8b4c3da7: Preparing build 26-Feb-2019 10:59:54 0de2edf7bff4: Preparing build 26-Feb-2019 10:59:54 0bf237dd105f: Waiting build 26-Feb-2019 10:59:54 68dda0c9a8cd: Waiting build 26-Feb-2019 10:59:54 f67191ae09b8: Waiting build 26-Feb-2019 10:59:54 b2fd8b4c3da7: Waiting build 26-Feb-2019 10:59:54 9340d309f599: Waiting build 26-Feb-2019 10:59:54 0de2edf7bff4: Waiting build 26-Feb-2019 10:59:54 3c7cf46838f8: Waiting build 26-Feb-2019 10:59:54 40c741983680: Mounted from clowder/extractors-simple-extractor-python3 build 26-Feb-2019 10:59:55 decb9a7dc779: Mounted from clowder/extractors-simple-extractor-python3 build 26-Feb-2019 10:59:55 46609d37cd44: Mounted from clowder/extractors-simple-extractor-python3 build 26-Feb-2019 10:59:55 3c7cf46838f8: Mounted from clowder/extractors-simple-extractor-python3 build 26-Feb-2019 10:59:55 9340d309f599: Mounted from clowder/extractors-simple-extractor-python3 build 26-Feb-2019 10:59:55 a1d30e032fe7: Pushed build 26-Feb-2019 10:59:55 0bf237dd105f: Mounted from clowder/extractors-simple-extractor-python3 build 26-Feb-2019 10:59:56 68dda0c9a8cd: Layer already exists build 26-Feb-2019 10:59:56 f67191ae09b8: Layer already exists build 26-Feb-2019 10:59:56 b2fd8b4c3da7: Layer already exists build 26-Feb-2019 10:59:56 0de2edf7bff4: Layer already exists build 26-Feb-2019 11:00:22 50c3703cde42: Pushed build 26-Feb-2019 11:00:23 develop-onbuild: digest: sha256:2d65ead7ff67d4882f91552c2107f9ad820748e1cfc07cdc408bd20b8c8e0465 size: 2824 build 26-Feb-2019 11:00:24 The push refers to repository [docker.io/clowder/extractors-simple-r-extractor-python3] build 26-Feb-2019 11:00:24 a1d30e032fe7: Preparing build 26-Feb-2019 11:00:24 50c3703cde42: Preparing build 26-Feb-2019 11:00:24 decb9a7dc779: Preparing build 26-Feb-2019 11:00:24 40c741983680: Preparing build 26-Feb-2019 11:00:24 46609d37cd44: Preparing build 26-Feb-2019 11:00:24 9340d309f599: Preparing build 26-Feb-2019 11:00:24 3c7cf46838f8: Preparing build 26-Feb-2019 11:00:24 0bf237dd105f: Preparing build 26-Feb-2019 11:00:24 68dda0c9a8cd: Preparing build 26-Feb-2019 11:00:24 f67191ae09b8: Preparing build 26-Feb-2019 11:00:24 b2fd8b4c3da7: Preparing build 26-Feb-2019 11:00:24 0de2edf7bff4: Preparing build 26-Feb-2019 11:00:24 3c7cf46838f8: Waiting build 26-Feb-2019 11:00:24 0bf237dd105f: Waiting build 26-Feb-2019 11:00:24 68dda0c9a8cd: Waiting build 26-Feb-2019 11:00:24 f67191ae09b8: Waiting build 26-Feb-2019 11:00:24 b2fd8b4c3da7: Waiting build 26-Feb-2019 11:00:24 0de2edf7bff4: Waiting build 26-Feb-2019 11:00:24 9340d309f599: Waiting build 26-Feb-2019 11:00:25 40c741983680: Mounted from clowder/extractors-simple-r-extractor build 26-Feb-2019 11:00:25 decb9a7dc779: Mounted from clowder/extractors-simple-r-extractor build 26-Feb-2019 11:00:25 50c3703cde42: Mounted from clowder/extractors-simple-r-extractor build 26-Feb-2019 11:00:25 a1d30e032fe7: Mounted from clowder/extractors-simple-r-extractor build 26-Feb-2019 11:00:25 46609d37cd44: Mounted from clowder/extractors-simple-r-extractor build 26-Feb-2019 11:00:26 68dda0c9a8cd: Layer already exists build 26-Feb-2019 11:00:26 f67191ae09b8: Layer already exists build 26-Feb-2019 11:00:26 9340d309f599: Mounted from clowder/extractors-simple-r-extractor build 26-Feb-2019 11:00:26 3c7cf46838f8: Mounted from clowder/extractors-simple-r-extractor build 26-Feb-2019 11:00:26 b2fd8b4c3da7: Layer already exists build 26-Feb-2019 11:00:26 0bf237dd105f: Mounted from clowder/extractors-simple-r-extractor build 26-Feb-2019 11:00:26 0de2edf7bff4: Layer already exists build 26-Feb-2019 11:00:28 develop-onbuild: digest: sha256:2d65ead7ff67d4882f91552c2107f9ad820748e1cfc07cdc408bd20b8c8e0465 size: 2824 simple 26-Feb-2019 11:00:28 Finished task 'docker push' with result: Success simple 26-Feb-2019 11:00:28 Starting task 'test results' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit' simple 26-Feb-2019 11:00:28 Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1... simple 26-Feb-2019 11:00:28 Finished task 'test results' with result: Success simple 26-Feb-2019 11:00:28 Running post build plugin 'Docker Container Cleanup' simple 26-Feb-2019 11:00:28 Running post build plugin 'NCover Results Collector' simple 26-Feb-2019 11:00:28 Running post build plugin 'Clover Results Collector' simple 26-Feb-2019 11:00:28 Running post build plugin 'npm Cache Cleanup' simple 26-Feb-2019 11:00:28 Running post build plugin 'Artifact Copier' simple 26-Feb-2019 11:00:28 Finalising the build... simple 26-Feb-2019 11:00:28 Stopping timer. simple 26-Feb-2019 11:00:28 Build CATS-PYC265-JOB1-21 completed. simple 26-Feb-2019 11:00:28 Running on server: post build plugin 'NCover Results Collector' simple 26-Feb-2019 11:00:28 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 26-Feb-2019 11:00:28 Running on server: post build plugin 'Clover Delta Calculator' simple 26-Feb-2019 11:00:28 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 26-Feb-2019 11:00:28 All post build plugins have finished simple 26-Feb-2019 11:00:28 Generating build results summary... simple 26-Feb-2019 11:00:28 Saving build results to disk... simple 26-Feb-2019 11:00:28 Logging substituted variables... simple 26-Feb-2019 11:00:28 Indexing build results... simple 26-Feb-2019 11:00:28 Finished building CATS-PYC265-JOB1-21.