simple 29-Mar-2019 14:38:56 Build Clowder - pyclowder2 - develop - Default Job #23 (CATS-PYC265-JOB1-23) started building on agent buildserver-1.os.ncsa.edu simple 29-Mar-2019 14:38:56 Remote agent on host buildserver-1.os.ncsa.edu simple 29-Mar-2019 14:38:56 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1 simple 29-Mar-2019 14:38:56 Executing build Clowder - pyclowder2 - develop - Default Job #23 (CATS-PYC265-JOB1-23) simple 29-Mar-2019 14:38:56 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 29-Mar-2019 14:38:56 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1 simple 29-Mar-2019 14:38:56 Updating source code to revision: 87a6605ea74a9ed9ddf685d4a0cd25cf27390699 simple 29-Mar-2019 14:38:56 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1/.git'. simple 29-Mar-2019 14:38:56 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1/.git/ simple 29-Mar-2019 14:38:56 Fetching 'refs/heads/develop' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git'. Will try to do a shallow fetch. simple 29-Mar-2019 14:38:56 Warning: Permanently added '[127.0.0.1]:39525' (RSA) to the list of known hosts. simple 29-Mar-2019 14:38:56 From ssh://127.0.0.1:39525/cats/pyclowder2 simple 29-Mar-2019 14:38:56 * [new branch] develop -> develop simple 29-Mar-2019 14:38:56 Checking out revision 87a6605ea74a9ed9ddf685d4a0cd25cf27390699. simple 29-Mar-2019 14:38:56 Switched to branch 'develop' simple 29-Mar-2019 14:38:56 Updated source code to revision: 87a6605ea74a9ed9ddf685d4a0cd25cf27390699 simple 29-Mar-2019 14:38:56 Finished task 'Checkout Default Repository' with result: Success simple 29-Mar-2019 14:38:56 Running pre-build action: VCS Version Collector simple 29-Mar-2019 14:38:56 Starting task 'pytest' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 29-Mar-2019 14:38:56 Beginning to execute external process for build 'Clowder - pyclowder2 - develop - Default Job #23 (CATS-PYC265-JOB1-23)'\n ... running command line: \n/home/bamboo/bamboo-agent-home/temp/CATS-PYC265-JOB1-23-ScriptBuildTask-4595652015176672640.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=develop\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_planRepository_1_branchDisplayName=develop\nbamboo_repository_revision_number=87a6605ea74a9ed9ddf685d4a0cd25cf27390699\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC265-JOB1-23\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_repository_157745161_name=pyclowder2\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1\nbamboo_planRepository_1_name=pyclowder2\nbamboo_buildKey=CATS-PYC265-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=develop\nbamboo_repository_157745161_branch_name=develop\nbamboo_planRepository_name=pyclowder2\nbamboo_buildNumber=23\nbamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC265-JOB1-23\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_agentId=140673027\nbamboo_planName=Clowder - 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pyclowder2 - develop - Default Job\nbamboo_planRepository_1_revision=87a6605ea74a9ed9ddf685d4a0cd25cf27390699\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=pyclowder2\nbamboo_buildFailed=false\nbamboo_repository_157745161_git_branch=develop\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_branch=develop\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_repository_157745161_previous_revision_number=764d9e0e516bfc4aba00f9e03b402858665c62af\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=764d9e0e516bfc4aba00f9e03b402858665c62af\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_planRepository_branchDisplayName=develop\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=develop\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-157548561\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_repository_157745161_revision_number=87a6605ea74a9ed9ddf685d4a0cd25cf27390699\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1\nbamboo_planKey=CATS-PYC265\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_1_branchName=develop\n build 29-Mar-2019 14:38:56 New python executable in /tmp/virtualenv/pyclowder2/bin/python2 build 29-Mar-2019 14:38:56 Also creating executable in /tmp/virtualenv/pyclowder2/bin/python build 29-Mar-2019 14:38:59 Installing setuptools, pkg_resources, pip, wheel...done. build 29-Mar-2019 14:38:59 Running virtualenv with interpreter /usr/bin/python2 error 29-Mar-2019 14:38:59 DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. build 29-Mar-2019 14:38:59 Collecting enum34==1.1.6 (from -r requirements.txt (line 1)) build 29-Mar-2019 14:38:59 Using cached https://files.pythonhosted.org/packages/c5/db/e56e6b4bbac7c4a06de1c50de6fe1ef3810018ae11732a50f15f62c7d050/enum34-1.1.6-py2-none-any.whl build 29-Mar-2019 14:38:59 Collecting pika==0.11.2 (from -r requirements.txt (line 2)) build 29-Mar-2019 14:39:00 Using cached https://files.pythonhosted.org/packages/76/b4/0ada6918ac79ce4d8d45d0ba436ee21a1ef685047fb1dde4d2de0178b327/pika-0.11.2-py2.py3-none-any.whl build 29-Mar-2019 14:39:00 Collecting PyYAML==3.12 (from -r requirements.txt (line 3)) build 29-Mar-2019 14:39:00 Collecting requests==2.18.4 (from -r requirements.txt (line 4)) build 29-Mar-2019 14:39:00 Using cached https://files.pythonhosted.org/packages/49/df/50aa1999ab9bde74656c2919d9c0c085fd2b3775fd3eca826012bef76d8c/requests-2.18.4-py2.py3-none-any.whl build 29-Mar-2019 14:39:00 Collecting wheel==0.24.0 (from -r requirements.txt (line 5)) build 29-Mar-2019 14:39:00 Using cached https://files.pythonhosted.org/packages/e8/14/eaaac12b0432c984a27ad0050a5a0bedc6135df35a0f5f1f35228faf12d4/wheel-0.24.0-py2.py3-none-any.whl build 29-Mar-2019 14:39:00 Collecting urllib3==1.22 (from -r requirements.txt (line 6)) build 29-Mar-2019 14:39:00 Using cached https://files.pythonhosted.org/packages/63/cb/6965947c13a94236f6d4b8223e21beb4d576dc72e8130bd7880f600839b8/urllib3-1.22-py2.py3-none-any.whl build 29-Mar-2019 14:39:00 Collecting pytest==3.0.3 (from -r requirements.txt (line 7)) build 29-Mar-2019 14:39:00 Using cached https://files.pythonhosted.org/packages/a4/e9/bf75a9a91c4a545bad262937d1defa90d95ac912118a706406e21aef889a/pytest-3.0.3-py2.py3-none-any.whl build 29-Mar-2019 14:39:00 Collecting pytest-pep8==1.0.6 (from -r requirements.txt (line 8)) build 29-Mar-2019 14:39:00 Collecting certifi>=2017.4.17 (from requests==2.18.4->-r requirements.txt (line 4)) build 29-Mar-2019 14:39:00 Downloading https://files.pythonhosted.org/packages/60/75/f692a584e85b7eaba0e03827b3d51f45f571c2e793dd731e598828d380aa/certifi-2019.3.9-py2.py3-none-any.whl (158kB) build 29-Mar-2019 14:39:00 Collecting chardet<3.1.0,>=3.0.2 (from requests==2.18.4->-r requirements.txt (line 4)) build 29-Mar-2019 14:39:00 Using cached https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl build 29-Mar-2019 14:39:00 Collecting idna<2.7,>=2.5 (from requests==2.18.4->-r requirements.txt (line 4)) build 29-Mar-2019 14:39:00 Using cached https://files.pythonhosted.org/packages/27/cc/6dd9a3869f15c2edfab863b992838277279ce92663d334df9ecf5106f5c6/idna-2.6-py2.py3-none-any.whl build 29-Mar-2019 14:39:00 Collecting py>=1.4.29 (from pytest==3.0.3->-r requirements.txt (line 7)) build 29-Mar-2019 14:39:00 Using cached 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Using cached https://files.pythonhosted.org/packages/67/08/4815a09603fc800209431bec5b8bd2acf2f95abdfb558a44a42507fb94da/apipkg-1.5-py2.py3-none-any.whl build 29-Mar-2019 14:39:01 Installing collected packages: enum34, pika, PyYAML, certifi, chardet, idna, urllib3, requests, wheel, py, pytest, pep8, apipkg, execnet, pytest-cache, pytest-pep8 build 29-Mar-2019 14:39:01 Found existing installation: wheel 0.33.1 build 29-Mar-2019 14:39:01 Uninstalling wheel-0.33.1: build 29-Mar-2019 14:39:01 Successfully uninstalled wheel-0.33.1 build 29-Mar-2019 14:39:01 Successfully installed PyYAML-3.12 apipkg-1.5 certifi-2019.3.9 chardet-3.0.4 enum34-1.1.6 execnet-1.5.0 idna-2.6 pep8-1.7.1 pika-0.11.2 py-1.8.0 pytest-3.0.3 pytest-cache-1.0 pytest-pep8-1.0.6 requests-2.18.4 urllib3-1.22 wheel-0.24.0 build 29-Mar-2019 14:39:02 ============================= test session starts ============================== build 29-Mar-2019 14:39:02 platform linux2 -- Python 2.7.12, pytest-3.0.3, py-1.8.0, pluggy-0.4.0 build 29-Mar-2019 14:39:02 rootdir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1, inifile: setup.cfg build 29-Mar-2019 14:39:02 plugins: pep8-1.0.6 build 29-Mar-2019 14:39:02 collected 20 items build 29-Mar-2019 14:39:02 build 29-Mar-2019 14:39:02 setup.py . build 29-Mar-2019 14:39:02 contrib/monitor/monitor.py . build 29-Mar-2019 14:39:02 docs/source/conf.py . build 29-Mar-2019 14:39:02 pyclowder/__init__.py . build 29-Mar-2019 14:39:02 pyclowder/client.py . build 29-Mar-2019 14:39:02 pyclowder/collections.py . build 29-Mar-2019 14:39:02 pyclowder/connectors.py . build 29-Mar-2019 14:39:02 pyclowder/datasets.py . build 29-Mar-2019 14:39:02 pyclowder/extractors.py . build 29-Mar-2019 14:39:02 pyclowder/files.py . build 29-Mar-2019 14:39:02 pyclowder/geostreams.py . build 29-Mar-2019 14:39:02 pyclowder/sections.py . build 29-Mar-2019 14:39:02 pyclowder/utils.py . build 29-Mar-2019 14:39:02 sample-extractors/binary-preview/binary_extractor.py . build 29-Mar-2019 14:39:02 sample-extractors/echo/echo.py . build 29-Mar-2019 14:39:02 sample-extractors/simple-extractor/simple_extractor.py . build 29-Mar-2019 14:39:02 sample-extractors/simple-r-extractor/r_extractor.py . build 29-Mar-2019 14:39:02 sample-extractors/wordcount/wordcount.py . build 29-Mar-2019 14:39:02 sample-extractors/wordcount-simple-extractor/wordcount.py . build 29-Mar-2019 14:39:02 tests/clientTest.py . build 29-Mar-2019 14:39:02 build 29-Mar-2019 14:39:02 - generated xml file: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1/test-reports/results.xml - build 29-Mar-2019 14:39:02 ========================== 20 passed in 0.41 seconds =========================== simple 29-Mar-2019 14:39:02 Finished task 'pytest' with result: Success simple 29-Mar-2019 14:39:02 Starting task 'docker build' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 29-Mar-2019 14:39:02 Beginning to execute external process for build 'Clowder - pyclowder2 - develop - Default Job #23 (CATS-PYC265-JOB1-23)'\n ... running command line: \n/bin/sh docker.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1\n ... using extra environment variables: 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develop\nbamboo_shortPlanKey=PYC265\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_shortJobKey=JOB1\nbamboo_planRepository_revision=87a6605ea74a9ed9ddf685d4a0cd25cf27390699\nbamboo_buildTimeStamp=2019-03-29T14:22:08.927-05:00\nbamboo_repository_previous_revision_number=764d9e0e516bfc4aba00f9e03b402858665c62af\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_repository_157745161_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_3=/home/bamboo/bamboo-agent-home/temp/CATS-PYC265-JOB1-23-ScriptBuildTask-4595652015176672640.sh\nbamboo_planRepository_previousRevision=764d9e0e516bfc4aba00f9e03b402858665c62af\nbamboo_repository_157745161_git_username=\nbamboo_repository_git_branch=develop\nbamboo_buildResultKey=CATS-PYC265-JOB1-23\nbamboo_repository_branch_name=develop\nbamboo_buildPlanName=Clowder - pyclowder2 - develop - Default Job\nbamboo_planRepository_1_revision=87a6605ea74a9ed9ddf685d4a0cd25cf27390699\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=pyclowder2\nbamboo_buildFailed=false\nbamboo_repository_157745161_git_branch=develop\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_branch=develop\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_repository_157745161_previous_revision_number=764d9e0e516bfc4aba00f9e03b402858665c62af\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=764d9e0e516bfc4aba00f9e03b402858665c62af\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_planRepository_branchDisplayName=develop\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=develop\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-157548561\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_repository_157745161_revision_number=87a6605ea74a9ed9ddf685d4a0cd25cf27390699\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1\nbamboo_planKey=CATS-PYC265\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_1_branchName=develop\n build 29-Mar-2019 14:39:02 Sending build context to Docker daemon 268.8kB build 29-Mar-2019 14:39:02 build 29-Mar-2019 14:39:02 Step 1/9 : FROM ubuntu:16.04 build 29-Mar-2019 14:39:02 ---> 9361ce633ff1 build 29-Mar-2019 14:39:02 Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" build 29-Mar-2019 14:39:03 ---> Running in 8d10502484e8 build 29-Mar-2019 14:39:04 Removing intermediate container 8d10502484e8 build 29-Mar-2019 14:39:04 ---> b8711d38a99c build 29-Mar-2019 14:39:04 Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* build 29-Mar-2019 14:39:04 ---> Running in 21985d371957 build 29-Mar-2019 14:39:10 Reading package lists... build 29-Mar-2019 14:39:10 Building dependency tree... build 29-Mar-2019 14:39:10 Reading state information... build 29-Mar-2019 14:39:10 The following additional packages will be installed: build 29-Mar-2019 14:39:10 ca-certificates libexpat1 libffi6 libpython-stdlib libpython2.7-minimal build 29-Mar-2019 14:39:10 libpython2.7-stdlib libsqlite3-0 libssl1.0.0 mime-support openssl build 29-Mar-2019 14:39:10 python-minimal python-pip-whl python2.7 python2.7-minimal build 29-Mar-2019 14:39:10 Suggested packages: build 29-Mar-2019 14:39:10 python-doc python-tk python2.7-doc binutils binfmt-support build 29-Mar-2019 14:39:10 Recommended packages: build 29-Mar-2019 14:39:10 file build-essential python-all-dev python-setuptools python-wheel build 29-Mar-2019 14:39:10 The following NEW packages will be installed: build 29-Mar-2019 14:39:10 ca-certificates libexpat1 libffi6 libpython-stdlib libpython2.7-minimal build 29-Mar-2019 14:39:10 libpython2.7-stdlib libsqlite3-0 libssl1.0.0 mime-support openssl python build 29-Mar-2019 14:39:10 python-minimal python-pip python-pip-whl python2.7 python2.7-minimal build 29-Mar-2019 14:39:10 0 upgraded, 16 newly installed, 0 to remove and 6 not upgraded. build 29-Mar-2019 14:39:10 Need to get 7391 kB of archives. build 29-Mar-2019 14:39:10 After this operation, 24.8 MB of additional disk space will be used. build 29-Mar-2019 14:39:10 Get:1 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-minimal amd64 2.7.12-1ubuntu0~16.04.4 [339 kB] build 29-Mar-2019 14:39:11 Get:2 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7-minimal amd64 2.7.12-1ubuntu0~16.04.4 [1261 kB] build 29-Mar-2019 14:39:11 Get:3 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-minimal amd64 2.7.12-1~16.04 [28.1 kB] build 29-Mar-2019 14:39:11 Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 mime-support all 3.59ubuntu1 [31.0 kB] build 29-Mar-2019 14:39:11 Get:5 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libexpat1 amd64 2.1.0-7ubuntu0.16.04.3 [71.2 kB] build 29-Mar-2019 14:39:11 Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libffi6 amd64 3.2.1-4 [17.8 kB] build 29-Mar-2019 14:39:11 Get:7 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libsqlite3-0 amd64 3.11.0-1ubuntu1.1 [396 kB] build 29-Mar-2019 14:39:11 Get:8 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libssl1.0.0 amd64 1.0.2g-1ubuntu4.15 [1084 kB] build 29-Mar-2019 14:39:11 Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-stdlib amd64 2.7.12-1ubuntu0~16.04.4 [1880 kB] build 29-Mar-2019 14:39:11 Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7 amd64 2.7.12-1ubuntu0~16.04.4 [224 kB] build 29-Mar-2019 14:39:11 Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython-stdlib amd64 2.7.12-1~16.04 [7768 B] build 29-Mar-2019 14:39:11 Get:12 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python amd64 2.7.12-1~16.04 [137 kB] build 29-Mar-2019 14:39:11 Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 openssl amd64 1.0.2g-1ubuntu4.15 [492 kB] build 29-Mar-2019 14:39:12 Get:14 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 ca-certificates all 20170717~16.04.2 [167 kB] build 29-Mar-2019 14:39:12 Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 python-pip-whl all 8.1.1-2ubuntu0.4 [1110 kB] build 29-Mar-2019 14:39:12 Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 python-pip all 8.1.1-2ubuntu0.4 [144 kB] build 29-Mar-2019 14:39:12 debconf: delaying package configuration, since apt-utils is not installed build 29-Mar-2019 14:39:12 Fetched 7391 kB in 1s (5580 kB/s) build 29-Mar-2019 14:39:13 Selecting previously unselected package libpython2.7-minimal:amd64. build 29-Mar-2019 14:39:13 (Reading database ... build 29-Mar-2019 14:39:13 (Reading database ... 5% build 29-Mar-2019 14:39:13 (Reading database ... 10% build 29-Mar-2019 14:39:13 (Reading database ... 15% build 29-Mar-2019 14:39:13 (Reading database ... 20% build 29-Mar-2019 14:39:13 (Reading database ... 25% build 29-Mar-2019 14:39:13 (Reading database ... 30% build 29-Mar-2019 14:39:13 (Reading database ... 35% build 29-Mar-2019 14:39:13 (Reading database ... 40% build 29-Mar-2019 14:39:13 (Reading database ... 45% build 29-Mar-2019 14:39:13 (Reading database ... 50% build 29-Mar-2019 14:39:13 (Reading database ... 55% build 29-Mar-2019 14:39:13 (Reading database ... 60% build 29-Mar-2019 14:39:13 (Reading database ... 65% build 29-Mar-2019 14:39:13 (Reading database ... 70% build 29-Mar-2019 14:39:13 (Reading database ... 75% build 29-Mar-2019 14:39:13 (Reading database ... 80% build 29-Mar-2019 14:39:13 (Reading database ... 85% build 29-Mar-2019 14:39:13 (Reading database ... 90% build 29-Mar-2019 14:39:13 (Reading database ... 95% build 29-Mar-2019 14:39:13 (Reading database ... 100% build 29-Mar-2019 14:39:13 (Reading database ... 4768 files and directories currently installed.) build 29-Mar-2019 14:39:13 Preparing to unpack .../libpython2.7-minimal_2.7.12-1ubuntu0~16.04.4_amd64.deb ... build 29-Mar-2019 14:39:13 Unpacking libpython2.7-minimal:amd64 (2.7.12-1ubuntu0~16.04.4) ... build 29-Mar-2019 14:39:14 Selecting previously unselected package python2.7-minimal. build 29-Mar-2019 14:39:14 Preparing to unpack .../python2.7-minimal_2.7.12-1ubuntu0~16.04.4_amd64.deb ... build 29-Mar-2019 14:39:14 Unpacking python2.7-minimal (2.7.12-1ubuntu0~16.04.4) ... build 29-Mar-2019 14:39:16 Selecting previously unselected package python-minimal. build 29-Mar-2019 14:39:16 Preparing to unpack .../python-minimal_2.7.12-1~16.04_amd64.deb ... build 29-Mar-2019 14:39:16 Unpacking python-minimal (2.7.12-1~16.04) ... build 29-Mar-2019 14:39:17 Selecting previously unselected package mime-support. build 29-Mar-2019 14:39:17 Preparing to unpack .../mime-support_3.59ubuntu1_all.deb ... build 29-Mar-2019 14:39:17 Unpacking mime-support (3.59ubuntu1) ... build 29-Mar-2019 14:39:18 Selecting previously unselected package libexpat1:amd64. build 29-Mar-2019 14:39:18 Preparing to unpack .../libexpat1_2.1.0-7ubuntu0.16.04.3_amd64.deb ... build 29-Mar-2019 14:39:18 Unpacking libexpat1:amd64 (2.1.0-7ubuntu0.16.04.3) ... build 29-Mar-2019 14:39:19 Selecting previously unselected package libffi6:amd64. build 29-Mar-2019 14:39:19 Preparing to unpack .../libffi6_3.2.1-4_amd64.deb ... build 29-Mar-2019 14:39:19 Unpacking libffi6:amd64 (3.2.1-4) ... build 29-Mar-2019 14:39:20 Selecting previously unselected package libsqlite3-0:amd64. build 29-Mar-2019 14:39:20 Preparing to unpack .../libsqlite3-0_3.11.0-1ubuntu1.1_amd64.deb ... build 29-Mar-2019 14:39:20 Unpacking libsqlite3-0:amd64 (3.11.0-1ubuntu1.1) ... build 29-Mar-2019 14:39:21 Selecting previously unselected package libssl1.0.0:amd64. build 29-Mar-2019 14:39:21 Preparing to unpack .../libssl1.0.0_1.0.2g-1ubuntu4.15_amd64.deb ... build 29-Mar-2019 14:39:21 Unpacking libssl1.0.0:amd64 (1.0.2g-1ubuntu4.15) ... build 29-Mar-2019 14:39:22 Selecting previously unselected package libpython2.7-stdlib:amd64. build 29-Mar-2019 14:39:22 Preparing to unpack .../libpython2.7-stdlib_2.7.12-1ubuntu0~16.04.4_amd64.deb ... build 29-Mar-2019 14:39:22 Unpacking libpython2.7-stdlib:amd64 (2.7.12-1ubuntu0~16.04.4) ... build 29-Mar-2019 14:39:24 Selecting previously unselected package python2.7. build 29-Mar-2019 14:39:24 Preparing to unpack .../python2.7_2.7.12-1ubuntu0~16.04.4_amd64.deb ... build 29-Mar-2019 14:39:24 Unpacking python2.7 (2.7.12-1ubuntu0~16.04.4) ... build 29-Mar-2019 14:39:24 Selecting previously unselected package libpython-stdlib:amd64. build 29-Mar-2019 14:39:24 Preparing to unpack .../libpython-stdlib_2.7.12-1~16.04_amd64.deb ... build 29-Mar-2019 14:39:25 Unpacking libpython-stdlib:amd64 (2.7.12-1~16.04) ... build 29-Mar-2019 14:39:25 Processing triggers for libc-bin (2.23-0ubuntu11) ... build 29-Mar-2019 14:39:26 Setting up libpython2.7-minimal:amd64 (2.7.12-1ubuntu0~16.04.4) ... build 29-Mar-2019 14:39:27 Setting up python2.7-minimal (2.7.12-1ubuntu0~16.04.4) ... build 29-Mar-2019 14:39:27 Linking and byte-compiling packages for runtime python2.7... build 29-Mar-2019 14:39:27 Setting up python-minimal (2.7.12-1~16.04) ... build 29-Mar-2019 14:39:28 Selecting previously unselected package python. build 29-Mar-2019 14:39:28 (Reading database ... build 29-Mar-2019 14:39:28 (Reading database ... 5% build 29-Mar-2019 14:39:28 (Reading database ... 10% build 29-Mar-2019 14:39:28 (Reading database ... 15% build 29-Mar-2019 14:39:28 (Reading database ... 20% build 29-Mar-2019 14:39:28 (Reading database ... 25% build 29-Mar-2019 14:39:28 (Reading database ... 30% build 29-Mar-2019 14:39:28 (Reading database ... 35% build 29-Mar-2019 14:39:28 (Reading database ... 40% build 29-Mar-2019 14:39:28 (Reading database ... 45% build 29-Mar-2019 14:39:28 (Reading database ... 50% build 29-Mar-2019 14:39:28 (Reading database ... 55% build 29-Mar-2019 14:39:28 (Reading database ... 60% build 29-Mar-2019 14:39:28 (Reading database ... 65% build 29-Mar-2019 14:39:28 (Reading database ... 70% build 29-Mar-2019 14:39:28 (Reading database ... 75% build 29-Mar-2019 14:39:28 (Reading database ... 80% build 29-Mar-2019 14:39:28 (Reading database ... 85% build 29-Mar-2019 14:39:28 (Reading database ... 90% build 29-Mar-2019 14:39:28 (Reading database ... 95% build 29-Mar-2019 14:39:28 (Reading database ... 100% build 29-Mar-2019 14:39:28 (Reading database ... 5579 files and directories currently installed.) build 29-Mar-2019 14:39:28 Preparing to unpack .../python_2.7.12-1~16.04_amd64.deb ... build 29-Mar-2019 14:39:28 Unpacking python (2.7.12-1~16.04) ... build 29-Mar-2019 14:39:29 Selecting previously unselected package openssl. build 29-Mar-2019 14:39:29 Preparing to unpack .../openssl_1.0.2g-1ubuntu4.15_amd64.deb ... build 29-Mar-2019 14:39:29 Unpacking openssl (1.0.2g-1ubuntu4.15) ... build 29-Mar-2019 14:39:30 Selecting previously unselected package ca-certificates. build 29-Mar-2019 14:39:30 Preparing to unpack .../ca-certificates_20170717~16.04.2_all.deb ... build 29-Mar-2019 14:39:30 Unpacking ca-certificates (20170717~16.04.2) ... build 29-Mar-2019 14:39:31 Selecting previously unselected package python-pip-whl. build 29-Mar-2019 14:39:31 Preparing to unpack .../python-pip-whl_8.1.1-2ubuntu0.4_all.deb ... build 29-Mar-2019 14:39:31 Unpacking python-pip-whl (8.1.1-2ubuntu0.4) ... build 29-Mar-2019 14:39:32 Selecting previously unselected package python-pip. build 29-Mar-2019 14:39:32 Preparing to unpack .../python-pip_8.1.1-2ubuntu0.4_all.deb ... build 29-Mar-2019 14:39:32 Unpacking python-pip (8.1.1-2ubuntu0.4) ... build 29-Mar-2019 14:39:33 Setting up mime-support (3.59ubuntu1) ... build 29-Mar-2019 14:39:33 Setting up libexpat1:amd64 (2.1.0-7ubuntu0.16.04.3) ... build 29-Mar-2019 14:39:33 Setting up libffi6:amd64 (3.2.1-4) ... build 29-Mar-2019 14:39:34 Setting up libsqlite3-0:amd64 (3.11.0-1ubuntu1.1) ... build 29-Mar-2019 14:39:34 Setting up libssl1.0.0:amd64 (1.0.2g-1ubuntu4.15) ... build 29-Mar-2019 14:39:34 debconf: unable to initialize frontend: Dialog build 29-Mar-2019 14:39:34 debconf: (TERM is not set, so the dialog frontend is not usable.) build 29-Mar-2019 14:39:34 debconf: falling back to frontend: Readline build 29-Mar-2019 14:39:34 debconf: unable to initialize frontend: Readline build 29-Mar-2019 14:39:34 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) build 29-Mar-2019 14:39:34 debconf: falling back to frontend: Teletype build 29-Mar-2019 14:39:35 Setting up libpython2.7-stdlib:amd64 (2.7.12-1ubuntu0~16.04.4) ... build 29-Mar-2019 14:39:35 Setting up python2.7 (2.7.12-1ubuntu0~16.04.4) ... build 29-Mar-2019 14:39:36 Setting up libpython-stdlib:amd64 (2.7.12-1~16.04) ... build 29-Mar-2019 14:39:36 Setting up python (2.7.12-1~16.04) ... build 29-Mar-2019 14:39:37 Setting up openssl (1.0.2g-1ubuntu4.15) ... build 29-Mar-2019 14:39:37 Setting up ca-certificates (20170717~16.04.2) ... build 29-Mar-2019 14:39:37 debconf: unable to initialize frontend: Dialog build 29-Mar-2019 14:39:37 debconf: (TERM is not set, so the dialog frontend is not usable.) build 29-Mar-2019 14:39:37 debconf: falling back to frontend: Readline build 29-Mar-2019 14:39:37 debconf: unable to initialize frontend: Readline build 29-Mar-2019 14:39:37 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) build 29-Mar-2019 14:39:37 debconf: falling back to frontend: Teletype build 29-Mar-2019 14:39:38 Setting up python-pip-whl (8.1.1-2ubuntu0.4) ... build 29-Mar-2019 14:39:38 Setting up python-pip (8.1.1-2ubuntu0.4) ... build 29-Mar-2019 14:39:39 Processing triggers for libc-bin (2.23-0ubuntu11) ... build 29-Mar-2019 14:39:40 Processing triggers for ca-certificates (20170717~16.04.2) ... build 29-Mar-2019 14:39:40 Updating certificates in /etc/ssl/certs... build 29-Mar-2019 14:39:41 148 added, 0 removed; done. build 29-Mar-2019 14:39:41 Running hooks in /etc/ca-certificates/update.d... build 29-Mar-2019 14:39:41 done. build 29-Mar-2019 14:39:42 Collecting setuptools build 29-Mar-2019 14:39:42 Downloading https://files.pythonhosted.org/packages/d1/6a/4b2fcefd2ea0868810e92d519dacac1ddc64a2e53ba9e3422c3b62b378a6/setuptools-40.8.0-py2.py3-none-any.whl (575kB) build 29-Mar-2019 14:39:42 Installing collected packages: setuptools build 29-Mar-2019 14:39:43 Successfully installed setuptools-40.8.0 build 29-Mar-2019 14:39:43 You are using pip version 8.1.1, however version 19.0.3 is available. build 29-Mar-2019 14:39:43 You should consider upgrading via the 'pip install --upgrade pip' command. build 29-Mar-2019 14:39:45 Removing intermediate container 21985d371957 build 29-Mar-2019 14:39:45 ---> 405c1777f1c8 build 29-Mar-2019 14:39:45 Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder build 29-Mar-2019 14:39:46 ---> aa8ae74c236c build 29-Mar-2019 14:39:46 Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/ build 29-Mar-2019 14:39:46 ---> 0b22b2408694 build 29-Mar-2019 14:39:46 Step 6/9 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder build 29-Mar-2019 14:39:47 ---> Running in dd95dac37618 build 29-Mar-2019 14:39:48 Processing /tmp/pyclowder build 29-Mar-2019 14:39:48 Collecting enum34==1.1.6 (from pyclowder===2.1.1) build 29-Mar-2019 14:39:49 Downloading https://files.pythonhosted.org/packages/c5/db/e56e6b4bbac7c4a06de1c50de6fe1ef3810018ae11732a50f15f62c7d050/enum34-1.1.6-py2-none-any.whl build 29-Mar-2019 14:39:49 Collecting pika==0.11.2 (from pyclowder===2.1.1) build 29-Mar-2019 14:39:49 Downloading https://files.pythonhosted.org/packages/76/b4/0ada6918ac79ce4d8d45d0ba436ee21a1ef685047fb1dde4d2de0178b327/pika-0.11.2-py2.py3-none-any.whl (107kB) build 29-Mar-2019 14:39:49 Collecting PyYAML==3.12 (from pyclowder===2.1.1) build 29-Mar-2019 14:39:49 Downloading https://files.pythonhosted.org/packages/4a/85/db5a2df477072b2902b0eb892feb37d88ac635d36245a72a6a69b23b383a/PyYAML-3.12.tar.gz (253kB) build 29-Mar-2019 14:39:49 Collecting requests==2.18.4 (from pyclowder===2.1.1) build 29-Mar-2019 14:39:49 Downloading https://files.pythonhosted.org/packages/49/df/50aa1999ab9bde74656c2919d9c0c085fd2b3775fd3eca826012bef76d8c/requests-2.18.4-py2.py3-none-any.whl (88kB) build 29-Mar-2019 14:39:49 Collecting certifi>=2017.4.17 (from requests==2.18.4->pyclowder===2.1.1) build 29-Mar-2019 14:39:49 Downloading https://files.pythonhosted.org/packages/60/75/f692a584e85b7eaba0e03827b3d51f45f571c2e793dd731e598828d380aa/certifi-2019.3.9-py2.py3-none-any.whl (158kB) build 29-Mar-2019 14:39:49 Collecting chardet<3.1.0,>=3.0.2 (from requests==2.18.4->pyclowder===2.1.1) build 29-Mar-2019 14:39:49 Downloading https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl (133kB) build 29-Mar-2019 14:39:49 Collecting idna<2.7,>=2.5 (from requests==2.18.4->pyclowder===2.1.1) build 29-Mar-2019 14:39:49 Downloading https://files.pythonhosted.org/packages/27/cc/6dd9a3869f15c2edfab863b992838277279ce92663d334df9ecf5106f5c6/idna-2.6-py2.py3-none-any.whl (56kB) build 29-Mar-2019 14:39:49 Collecting urllib3<1.23,>=1.21.1 (from requests==2.18.4->pyclowder===2.1.1) build 29-Mar-2019 14:39:49 Downloading https://files.pythonhosted.org/packages/63/cb/6965947c13a94236f6d4b8223e21beb4d576dc72e8130bd7880f600839b8/urllib3-1.22-py2.py3-none-any.whl (132kB) build 29-Mar-2019 14:39:50 Building wheels for collected packages: PyYAML build 29-Mar-2019 14:39:50 Running setup.py bdist_wheel for PyYAML: started build 29-Mar-2019 14:39:50 Running setup.py bdist_wheel for PyYAML: finished with status 'error' build 29-Mar-2019 14:39:50 Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-4P6adV/PyYAML/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpEwcVZmpip-wheel- --python-tag cp27: build 29-Mar-2019 14:39:50 usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] build 29-Mar-2019 14:39:50 or: -c --help [cmd1 cmd2 ...] build 29-Mar-2019 14:39:50 or: -c --help-commands build 29-Mar-2019 14:39:50 or: -c cmd --help build 29-Mar-2019 14:39:50 build 29-Mar-2019 14:39:50 error: invalid command 'bdist_wheel' build 29-Mar-2019 14:39:50 build 29-Mar-2019 14:39:50 ---------------------------------------- build 29-Mar-2019 14:39:50  Failed building wheel for PyYAML build 29-Mar-2019 14:39:50  Running setup.py clean for PyYAML build 29-Mar-2019 14:39:50 Failed to build PyYAML build 29-Mar-2019 14:39:50 Installing collected packages: enum34, pika, PyYAML, certifi, chardet, idna, urllib3, requests, pyclowder build 29-Mar-2019 14:39:50 Running setup.py install for PyYAML: started build 29-Mar-2019 14:39:50 Running setup.py install for PyYAML: finished with status 'done' build 29-Mar-2019 14:39:50 Running setup.py install for pyclowder: started build 29-Mar-2019 14:39:51 Running setup.py install for pyclowder: finished with status 'done' build 29-Mar-2019 14:39:51 Successfully installed PyYAML-3.12 certifi-2019.3.9 chardet-3.0.4 enum34-1.1.6 idna-2.6 pika-0.11.2 pyclowder-2.1.1 requests-2.18.4 urllib3-1.22 build 29-Mar-2019 14:39:51 You are using pip version 8.1.1, however version 19.0.3 is available. build 29-Mar-2019 14:39:51 You should consider upgrading via the 'pip install --upgrade pip' command. build 29-Mar-2019 14:39:52 Removing intermediate container dd95dac37618 build 29-Mar-2019 14:39:52 ---> 15dabcfede17 build 29-Mar-2019 14:39:52 Step 7/9 : WORKDIR /home/clowder build 29-Mar-2019 14:39:53 ---> Running in 02677d147461 build 29-Mar-2019 14:39:53 Removing intermediate container 02677d147461 build 29-Mar-2019 14:39:53 ---> 68118e6751a5 build 29-Mar-2019 14:39:53 Step 8/9 : COPY notifications.json /home/clowder build 29-Mar-2019 14:39:54 ---> 58b92a965abe build 29-Mar-2019 14:39:54 Step 9/9 : CMD python "./${MAIN_SCRIPT}" build 29-Mar-2019 14:39:54 ---> Running in f46cb1c8e86f build 29-Mar-2019 14:39:55 Removing intermediate container f46cb1c8e86f build 29-Mar-2019 14:39:55 ---> b2a4d1ef13d4 build 29-Mar-2019 14:39:55 Successfully built b2a4d1ef13d4 build 29-Mar-2019 14:39:55 Successfully tagged clowder/pyclowder:latest build 29-Mar-2019 14:39:55 Sending build context to Docker daemon 267.3kB build 29-Mar-2019 14:39:55 build 29-Mar-2019 14:39:55 Step 1/6 : FROM clowder/pyclowder build 29-Mar-2019 14:39:55 ---> b2a4d1ef13d4 build 29-Mar-2019 14:39:55 Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 29-Mar-2019 14:39:56 ---> Running in 96408181d809 build 29-Mar-2019 14:39:57 Removing intermediate container 96408181d809 build 29-Mar-2019 14:39:57 ---> c76c87cf5997 build 29-Mar-2019 14:39:57 Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 29-Mar-2019 14:39:57 ---> Running in 4913d352b03f build 29-Mar-2019 14:39:58 Removing intermediate container 4913d352b03f build 29-Mar-2019 14:39:58 ---> a4a17901bfc2 build 29-Mar-2019 14:39:58 Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 29-Mar-2019 14:39:58 ---> Running in f0697be81f38 build 29-Mar-2019 14:39:58 Removing intermediate container f0697be81f38 build 29-Mar-2019 14:39:58 ---> e25ce04c8c68 build 29-Mar-2019 14:39:58 Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 29-Mar-2019 14:39:59 ---> Running in de4ced23716c build 29-Mar-2019 14:39:59 Removing intermediate container de4ced23716c build 29-Mar-2019 14:39:59 ---> fc36fa56bdc4 build 29-Mar-2019 14:39:59 Step 6/6 : ONBUILD ADD . /home/clowder/ build 29-Mar-2019 14:39:59 ---> Running in ffe97919618c build 29-Mar-2019 14:40:00 Removing intermediate container ffe97919618c build 29-Mar-2019 14:40:00 ---> 2d3ef9580b49 build 29-Mar-2019 14:40:00 Successfully built 2d3ef9580b49 build 29-Mar-2019 14:40:00 Successfully tagged clowder/pyclowder:onbuild build 29-Mar-2019 14:40:00 Sending build context to Docker daemon 12.8kB build 29-Mar-2019 14:40:00 build 29-Mar-2019 14:40:00 Step 1/5 : FROM clowder/pyclowder:onbuild build 29-Mar-2019 14:40:00 # Executing 5 build triggers build 29-Mar-2019 14:40:02 ---> Running in 88b2905a58d8 build 29-Mar-2019 14:40:04 Removing intermediate container 88b2905a58d8 build 29-Mar-2019 14:40:05 ---> Running in 49c809e63191 build 29-Mar-2019 14:40:07 Removing intermediate container 49c809e63191 build 29-Mar-2019 14:40:08 ---> c4840cbc0083 build 29-Mar-2019 14:40:08 Step 2/5 : ENV MAIN_SCRIPT="binary_extractor.py" RABBITMQ_QUEUE="" IMAGE_BINARY="" IMAGE_TYPE="" IMAGE_THUMBNAIL_COMMAND="" IMAGE_PREVIEW_COMMAND="" PREVIEW_BINARY="" PREVIEW_TYPE="" PREVIEW_COMMAND="" build 29-Mar-2019 14:40:08 ---> Running in 920d88cef2b5 build 29-Mar-2019 14:40:08 Removing intermediate container 920d88cef2b5 build 29-Mar-2019 14:40:08 ---> 4c4ec99ec1df build 29-Mar-2019 14:40:08 Step 3/5 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 29-Mar-2019 14:40:09 ---> Running in 1ed4f8cd5482 build 29-Mar-2019 14:40:09 Removing intermediate container 1ed4f8cd5482 build 29-Mar-2019 14:40:09 ---> 7e4ed514e7ba build 29-Mar-2019 14:40:09 Step 4/5 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 29-Mar-2019 14:40:10 ---> Running in da3a15c85b04 build 29-Mar-2019 14:40:10 Removing intermediate container da3a15c85b04 build 29-Mar-2019 14:40:10 ---> 33369c9d67aa build 29-Mar-2019 14:40:10 Step 5/5 : ONBUILD COPY extractor_info.json /home/clowder/ build 29-Mar-2019 14:40:11 ---> Running in b2bca8714860 build 29-Mar-2019 14:40:11 Removing intermediate container b2bca8714860 build 29-Mar-2019 14:40:11 ---> bf326e729aba build 29-Mar-2019 14:40:11 Successfully built bf326e729aba build 29-Mar-2019 14:40:11 Successfully tagged clowder/extractors-binary-preview:onbuild build 29-Mar-2019 14:40:11 Sending build context to Docker daemon 6.656kB build 29-Mar-2019 14:40:11 build 29-Mar-2019 14:40:11 Step 1/9 : FROM clowder/pyclowder:onbuild build 29-Mar-2019 14:40:11 # Executing 5 build triggers build 29-Mar-2019 14:40:12 ---> Running in 23a63b56d71c build 29-Mar-2019 14:40:15 Removing intermediate container 23a63b56d71c build 29-Mar-2019 14:40:17 ---> Running in 4d3ab3a7bd7d build 29-Mar-2019 14:40:20 Removing intermediate container 4d3ab3a7bd7d build 29-Mar-2019 14:40:21 ---> ba4811f577f9 build 29-Mar-2019 14:40:21 Step 2/9 : ENV EXTRACTION_FUNC="" build 29-Mar-2019 14:40:21 ---> Running in ebfd3d31e432 build 29-Mar-2019 14:40:22 Removing intermediate container ebfd3d31e432 build 29-Mar-2019 14:40:22 ---> 2132744c82b5 build 29-Mar-2019 14:40:22 Step 3/9 : ENV EXTRACTION_MODULE="" build 29-Mar-2019 14:40:22 ---> Running in 21b20a394aec build 29-Mar-2019 14:40:23 Removing intermediate container 21b20a394aec build 29-Mar-2019 14:40:23 ---> 29b2bfe64aef build 29-Mar-2019 14:40:23 Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 29-Mar-2019 14:40:23 ---> Running in d04eea5b7447 build 29-Mar-2019 14:40:24 Removing intermediate container d04eea5b7447 build 29-Mar-2019 14:40:24 ---> 8b098b4a7cbf build 29-Mar-2019 14:40:24 Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 29-Mar-2019 14:40:24 ---> Running in 6c8da6878fd4 build 29-Mar-2019 14:40:25 Removing intermediate container 6c8da6878fd4 build 29-Mar-2019 14:40:25 ---> ecbbb840dc36 build 29-Mar-2019 14:40:25 Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 29-Mar-2019 14:40:25 ---> Running in a9806bb02850 build 29-Mar-2019 14:40:26 Removing intermediate container a9806bb02850 build 29-Mar-2019 14:40:26 ---> 33b8d0ac8c31 build 29-Mar-2019 14:40:26 Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 29-Mar-2019 14:40:26 ---> Running in d0e2ed9c0d97 build 29-Mar-2019 14:40:27 Removing intermediate container d0e2ed9c0d97 build 29-Mar-2019 14:40:27 ---> e873005fe417 build 29-Mar-2019 14:40:27 Step 8/9 : ONBUILD ADD . /home/clowder/ build 29-Mar-2019 14:40:27 ---> Running in ed71165873ad build 29-Mar-2019 14:40:28 Removing intermediate container ed71165873ad build 29-Mar-2019 14:40:28 ---> cafbf780df09 build 29-Mar-2019 14:40:28 Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" build 29-Mar-2019 14:40:28 ---> Running in 2c613da65545 build 29-Mar-2019 14:40:28 Removing intermediate container 2c613da65545 build 29-Mar-2019 14:40:28 ---> d7b14699c615 build 29-Mar-2019 14:40:28 Successfully built d7b14699c615 build 29-Mar-2019 14:40:28 Successfully tagged clowder/extractors-simple-extractor:onbuild build 29-Mar-2019 14:40:28 Sending build context to Docker daemon 13.31kB build 29-Mar-2019 14:40:28 build 29-Mar-2019 14:40:28 Step 1/10 : FROM clowder/pyclowder:latest build 29-Mar-2019 14:40:28 ---> b2a4d1ef13d4 build 29-Mar-2019 14:40:28 Step 2/10 : ENV R_SCRIPT="" R_FUNCTION="" build 29-Mar-2019 14:40:29 ---> Running in cbc586a918c5 build 29-Mar-2019 14:40:30 Removing intermediate container cbc586a918c5 build 29-Mar-2019 14:40:30 ---> 34efcd9d2263 build 29-Mar-2019 14:40:30 Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" build 29-Mar-2019 14:40:30 ---> Running in 524929b1a4ca build 29-Mar-2019 14:40:31 Executing: /tmp/tmp.ef20Y1WhL3/gpg.1.sh --keyserver build 29-Mar-2019 14:40:31 keyserver.ubuntu.com build 29-Mar-2019 14:40:31 --recv build 29-Mar-2019 14:40:31 E084DAB9 build 29-Mar-2019 14:40:31 gpg: requesting key E084DAB9 from hkp server keyserver.ubuntu.com build 29-Mar-2019 14:40:31 gpg: key E084DAB9: public key "Totally Legit Signing Key " imported build 29-Mar-2019 14:40:31 gpg: key E084DAB9: public key "Michael Rutter " imported build 29-Mar-2019 14:40:31 gpg: Total number processed: 2 build 29-Mar-2019 14:40:31 gpg: imported: 2 (RSA: 2) build 29-Mar-2019 14:40:36 Reading package lists... build 29-Mar-2019 14:40:36 Building dependency tree... build 29-Mar-2019 14:40:36 Reading state information... build 29-Mar-2019 14:40:36 The following additional packages will be installed: build 29-Mar-2019 14:40:36 autoconf automake autotools-dev binutils bsdmainutils build-essential bzip2 build 29-Mar-2019 14:40:36 cdbs cpp cpp-5 debhelper dh-strip-nondeterminism dh-translations dpkg-dev build 29-Mar-2019 14:40:36 file fontconfig fontconfig-config fonts-dejavu-core g++ g++-5 gcc gcc-5 build 29-Mar-2019 14:40:36 gettext gettext-base gfortran gfortran-5 groff-base icu-devtools intltool build 29-Mar-2019 14:40:36 intltool-debian libarchive-zip-perl libasan2 libasn1-8-heimdal build 29-Mar-2019 14:40:36 libasprintf0v5 libatomic1 libblas-common libblas-dev libblas3 libbz2-dev build 29-Mar-2019 14:40:36 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcroco3 libcurl3 build 29-Mar-2019 14:40:36 libdatrie1 libdpkg-perl libencode-locale-perl libfile-listing-perl build 29-Mar-2019 14:40:36 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-5-dev build 29-Mar-2019 14:40:36 libgdbm3 libgfortran-5-dev libgfortran3 libglib2.0-0 libgmp10 libgnutls30 build 29-Mar-2019 14:40:36 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b build 29-Mar-2019 14:40:36 libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 build 29-Mar-2019 14:40:36 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl build 29-Mar-2019 14:40:36 libhttp-cookies-perl libhttp-date-perl libhttp-message-perl build 29-Mar-2019 14:40:36 libhttp-negotiate-perl libhx509-5-heimdal libice6 libicu-dev libicu55 build 29-Mar-2019 14:40:36 libidn11 libio-html-perl libio-socket-ssl-perl libisl15 libitm1 libjbig0 build 29-Mar-2019 14:40:36 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev build 29-Mar-2019 14:40:36 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 build 29-Mar-2019 14:40:36 liblapack-dev liblapack3 libldap-2.4-2 liblsan0 liblwp-mediatypes-perl build 29-Mar-2019 14:40:36 liblwp-protocol-https-perl liblzma-dev libmagic1 libmpc3 libmpfr4 libmpx0 build 29-Mar-2019 14:40:36 libncurses5-dev libnet-http-perl libnet-ssleay-perl libnettle6 libp11-kit0 build 29-Mar-2019 14:40:36 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils build 29-Mar-2019 14:40:36 libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.22 build 29-Mar-2019 14:40:36 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libquadmath0 build 29-Mar-2019 14:40:36 libreadline-dev libreadline6-dev libroken18-heimdal librtmp1 libsasl2-2 build 29-Mar-2019 14:40:36 libsasl2-modules-db libsigsegv2 libsm6 libstdc++-5-dev libtasn1-6 libtcl8.6 build 29-Mar-2019 14:40:36 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 build 29-Mar-2019 14:40:36 libtsan0 libubsan0 libunistring0 liburi-perl libwind0-heimdal libwww-perl build 29-Mar-2019 14:40:36 libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 build 29-Mar-2019 14:40:36 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 build 29-Mar-2019 14:40:36 libxmuu1 libxrender1 libxss1 libxt6 linux-libc-dev m4 make man-db netbase build 29-Mar-2019 14:40:36 patch perl perl-modules-5.22 pkg-config po-debconf python-pkg-resources build 29-Mar-2019 14:40:36 python-scour python-six tzdata ucf unzip x11-common xauth xdg-utils xz-utils build 29-Mar-2019 14:40:36 zip zlib1g-dev build 29-Mar-2019 14:40:36 Suggested packages: build 29-Mar-2019 14:40:36 autoconf-archive gnu-standards autoconf-doc libtool binutils-doc wamerican build 29-Mar-2019 14:40:36 | wordlist whois vacation bzip2-doc devscripts cpp-doc gcc-5-locales dh-make build 29-Mar-2019 14:40:36 debian-keyring g++-multilib g++-5-multilib gcc-5-doc libstdc++6-5-dbg build 29-Mar-2019 14:40:36 gcc-multilib manpages-dev flex bison gdb gcc-doc gcc-5-multilib libgcc1-dbg build 29-Mar-2019 14:40:36 libgomp1-dbg libitm1-dbg libatomic1-dbg libasan2-dbg liblsan0-dbg build 29-Mar-2019 14:40:36 libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx0-dbg libquadmath0-dbg build 29-Mar-2019 14:40:36 gettext-doc autopoint gfortran-multilib gfortran-doc gfortran-5-multilib build 29-Mar-2019 14:40:36 gfortran-5-doc libgfortran3-dbg groff liblapack-doc-man liblapack-doc build 29-Mar-2019 14:40:36 glibc-doc gnutls-bin krb5-doc krb5-user libdata-dump-perl icu-doc build 29-Mar-2019 14:40:36 libcrypt-ssleay-perl liblzma-doc ncurses-doc readline-doc libstdc++-5-doc build 29-Mar-2019 14:40:36 tcl8.6 tk8.6 libauthen-ntlm-perl make-doc less www-browser ed diffutils-doc build 29-Mar-2019 14:40:36 perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl build 29-Mar-2019 14:40:36 libmail-box-perl python-setuptools python-rsvg python-cairo ess r-doc-info build 29-Mar-2019 14:40:36 | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base build 29-Mar-2019 14:40:36 texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra build 29-Mar-2019 14:40:36 texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo build 29-Mar-2019 14:40:36 gvfs-bin build 29-Mar-2019 14:40:36 Recommended packages: build 29-Mar-2019 14:40:36 fakeroot libalgorithm-merge-perl curl | wget | lynx-cur libasprintf-dev build 29-Mar-2019 14:40:36 libgettextpo-dev bzip2-doc manpages manpages-dev libfile-fcntllock-perl build 29-Mar-2019 14:40:36 libglib2.0-data shared-mime-info xdg-user-dirs libhtml-format-perl build 29-Mar-2019 14:40:36 krb5-locales libsasl2-modules libhtml-form-perl libhttp-daemon-perl build 29-Mar-2019 14:40:36 libmailtools-perl xml-core ifupdown rename libmail-sendmail-perl build 29-Mar-2019 14:40:36 r-recommended r-doc-html libfile-mimeinfo-perl libnet-dbus-perl build 29-Mar-2019 14:40:36 libx11-protocol-perl x11-utils x11-xserver-utils build 29-Mar-2019 14:40:36 The following NEW packages will be installed: build 29-Mar-2019 14:40:36 autoconf automake autotools-dev binutils bsdmainutils build-essential bzip2 build 29-Mar-2019 14:40:36 cdbs cpp cpp-5 debhelper dh-strip-nondeterminism dh-translations dpkg-dev build 29-Mar-2019 14:40:36 file fontconfig fontconfig-config fonts-dejavu-core g++ g++-5 gcc gcc-5 build 29-Mar-2019 14:40:36 gettext gettext-base gfortran gfortran-5 groff-base icu-devtools intltool build 29-Mar-2019 14:40:36 intltool-debian libarchive-zip-perl libasan2 libasn1-8-heimdal build 29-Mar-2019 14:40:36 libasprintf0v5 libatomic1 libblas-common libblas-dev libblas3 libbz2-dev build 29-Mar-2019 14:40:36 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcroco3 libcurl3 build 29-Mar-2019 14:40:36 libdatrie1 libdpkg-perl libencode-locale-perl libfile-listing-perl build 29-Mar-2019 14:40:36 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-5-dev build 29-Mar-2019 14:40:36 libgdbm3 libgfortran-5-dev libgfortran3 libglib2.0-0 libgmp10 libgnutls30 build 29-Mar-2019 14:40:36 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b build 29-Mar-2019 14:40:36 libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 build 29-Mar-2019 14:40:36 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl build 29-Mar-2019 14:40:36 libhttp-cookies-perl libhttp-date-perl libhttp-message-perl build 29-Mar-2019 14:40:36 libhttp-negotiate-perl libhx509-5-heimdal libice6 libicu-dev libicu55 build 29-Mar-2019 14:40:36 libidn11 libio-html-perl libio-socket-ssl-perl libisl15 libitm1 libjbig0 build 29-Mar-2019 14:40:36 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev build 29-Mar-2019 14:40:36 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 build 29-Mar-2019 14:40:36 liblapack-dev liblapack3 libldap-2.4-2 liblsan0 liblwp-mediatypes-perl build 29-Mar-2019 14:40:36 liblwp-protocol-https-perl liblzma-dev libmagic1 libmpc3 libmpfr4 libmpx0 build 29-Mar-2019 14:40:36 libncurses5-dev libnet-http-perl libnet-ssleay-perl libnettle6 libp11-kit0 build 29-Mar-2019 14:40:36 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils build 29-Mar-2019 14:40:36 libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.22 build 29-Mar-2019 14:40:36 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libquadmath0 build 29-Mar-2019 14:40:36 libreadline-dev libreadline6-dev libroken18-heimdal librtmp1 libsasl2-2 build 29-Mar-2019 14:40:36 libsasl2-modules-db libsigsegv2 libsm6 libstdc++-5-dev libtasn1-6 libtcl8.6 build 29-Mar-2019 14:40:36 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 build 29-Mar-2019 14:40:36 libtsan0 libubsan0 libunistring0 liburi-perl libwind0-heimdal libwww-perl build 29-Mar-2019 14:40:36 libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 build 29-Mar-2019 14:40:36 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 build 29-Mar-2019 14:40:36 libxmuu1 libxrender1 libxss1 libxt6 linux-libc-dev m4 make man-db netbase build 29-Mar-2019 14:40:36 patch perl perl-modules-5.22 pkg-config po-debconf python-pkg-resources build 29-Mar-2019 14:40:36 python-scour python-six r-base-core r-base-dev tzdata ucf unzip x11-common build 29-Mar-2019 14:40:36 xauth xdg-utils xz-utils zip zlib1g-dev build 29-Mar-2019 14:40:37 0 upgraded, 190 newly installed, 0 to remove and 6 not upgraded. build 29-Mar-2019 14:40:37 Need to get 116 MB of archives. build 29-Mar-2019 14:40:37 After this operation, 416 MB of additional disk space will be used. build 29-Mar-2019 14:40:37 Get:1 http://cran.rstudio.com/bin/linux/ubuntu xenial/ r-base-core 3.4.4-1xenial0 [23.2 MB] build 29-Mar-2019 14:40:37 Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgdbm3 amd64 1.8.3-13.1 [16.9 kB] build 29-Mar-2019 14:40:37 Get:3 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libglib2.0-0 amd64 2.48.2-0ubuntu4.1 [1120 kB] build 29-Mar-2019 14:40:37 Get:4 http://cran.rstudio.com/bin/linux/ubuntu xenial/ r-base-dev 3.4.4-1xenial0 [4416 B] build 29-Mar-2019 14:40:37 Get:5 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] build 29-Mar-2019 14:40:37 Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxdmcp6 amd64 1:1.1.2-1.1 [11.0 kB] build 29-Mar-2019 14:40:37 Get:7 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb1 amd64 1.11.1-1ubuntu1 [40.0 kB] build 29-Mar-2019 14:40:37 Get:8 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-data all 2:1.6.3-1ubuntu2.1 [113 kB] build 29-Mar-2019 14:40:37 Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-6 amd64 2:1.6.3-1ubuntu2.1 [570 kB] build 29-Mar-2019 14:40:38 Get:10 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB] build 29-Mar-2019 14:40:38 Get:11 http://archive.ubuntu.com/ubuntu xenial/main amd64 groff-base amd64 1.22.3-7 [1151 kB] build 29-Mar-2019 14:40:38 Get:12 http://archive.ubuntu.com/ubuntu xenial/main amd64 bsdmainutils amd64 9.0.6ubuntu3 [174 kB] build 29-Mar-2019 14:40:38 Get:13 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpipeline1 amd64 1.4.1-2 [24.6 kB] build 29-Mar-2019 14:40:38 Get:14 http://archive.ubuntu.com/ubuntu xenial/main amd64 man-db amd64 2.7.5-1 [854 kB] build 29-Mar-2019 14:40:38 Get:15 http://archive.ubuntu.com/ubuntu xenial/main amd64 fonts-dejavu-core all 2.35-1 [1039 kB] build 29-Mar-2019 14:40:38 Get:16 http://archive.ubuntu.com/ubuntu xenial/main amd64 ucf all 3.0036 [52.9 kB] build 29-Mar-2019 14:40:38 Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 fontconfig-config all 2.11.94-0ubuntu1.1 [49.9 kB] build 29-Mar-2019 14:40:38 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpng12-0 amd64 1.2.54-1ubuntu1.1 [116 kB] build 29-Mar-2019 14:40:38 Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfreetype6 amd64 2.6.1-0.1ubuntu2.3 [316 kB] build 29-Mar-2019 14:40:38 Get:20 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfontconfig1 amd64 2.11.94-0ubuntu1.1 [131 kB] build 29-Mar-2019 14:40:38 Get:21 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 fontconfig amd64 2.11.94-0ubuntu1.1 [178 kB] build 29-Mar-2019 14:40:38 Get:22 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 x11-common all 1:7.7+13ubuntu3.1 [22.9 kB] build 29-Mar-2019 14:40:38 Get:23 http://archive.ubuntu.com/ubuntu xenial/main amd64 libice6 amd64 2:1.0.9-1 [39.2 kB] build 29-Mar-2019 14:40:38 Get:24 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libjpeg-turbo8 amd64 1.4.2-0ubuntu3.1 [111 kB] build 29-Mar-2019 14:40:38 Get:25 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpcrecpp0v5 amd64 2:8.38-3.1 [15.2 kB] build 29-Mar-2019 14:40:38 Get:26 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsigsegv2 amd64 2.10-4 [14.1 kB] build 29-Mar-2019 14:40:38 Get:27 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB] build 29-Mar-2019 14:40:38 Get:28 http://archive.ubuntu.com/ubuntu xenial/main amd64 libunistring0 amd64 0.9.3-5.2ubuntu1 [279 kB] build 29-Mar-2019 14:40:38 Get:29 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxrender1 amd64 1:0.9.9-0ubuntu1 [18.5 kB] build 29-Mar-2019 14:40:38 Get:30 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxft2 amd64 2.3.2-1 [36.1 kB] build 29-Mar-2019 14:40:38 Get:31 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxss1 amd64 1:1.2.2-1 [8582 B] build 29-Mar-2019 14:40:38 Get:32 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 perl-modules-5.22 all 5.22.1-9ubuntu0.6 [2629 kB] build 29-Mar-2019 14:40:38 Get:33 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libperl5.22 amd64 5.22.1-9ubuntu0.6 [3405 kB] build 29-Mar-2019 14:40:38 Get:34 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 perl amd64 5.22.1-9ubuntu0.6 [237 kB] build 29-Mar-2019 14:40:38 Get:35 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjbig0 amd64 2.1-3.1 [26.6 kB] build 29-Mar-2019 14:40:38 Get:36 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgmp10 amd64 2:6.1.0+dfsg-2 [240 kB] build 29-Mar-2019 14:40:38 Get:37 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpfr4 amd64 3.1.4-1 [191 kB] build 29-Mar-2019 14:40:38 Get:38 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpc3 amd64 1.0.3-1 [39.7 kB] build 29-Mar-2019 14:40:38 Get:39 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 tzdata all 2018i-0ubuntu0.16.04 [168 kB] build 29-Mar-2019 14:40:38 Get:40 http://archive.ubuntu.com/ubuntu xenial/main amd64 bzip2 amd64 1.0.6-8 [32.7 kB] build 29-Mar-2019 14:40:38 Get:41 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmagic1 amd64 1:5.25-2ubuntu1.2 [216 kB] build 29-Mar-2019 14:40:38 Get:42 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 file amd64 1:5.25-2ubuntu1.2 [21.2 kB] build 29-Mar-2019 14:40:38 Get:43 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libnettle6 amd64 3.2-1ubuntu0.16.04.1 [93.5 kB] build 29-Mar-2019 14:40:38 Get:44 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhogweed4 amd64 3.2-1ubuntu0.16.04.1 [136 kB] build 29-Mar-2019 14:40:38 Get:45 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libidn11 amd64 1.32-3ubuntu1.2 [46.5 kB] build 29-Mar-2019 14:40:38 Get:46 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libp11-kit0 amd64 0.23.2-5~ubuntu16.04.1 [105 kB] build 29-Mar-2019 14:40:38 Get:47 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtasn1-6 amd64 4.7-3ubuntu0.16.04.3 [43.5 kB] build 29-Mar-2019 14:40:38 Get:48 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgnutls30 amd64 3.4.10-4ubuntu1.4 [548 kB] build 29-Mar-2019 14:40:38 Get:49 http://archive.ubuntu.com/ubuntu xenial/main amd64 netbase all 5.3 [12.9 kB] build 29-Mar-2019 14:40:38 Get:50 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasprintf0v5 amd64 0.19.7-2ubuntu3.1 [6568 B] build 29-Mar-2019 14:40:38 Get:51 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gettext-base amd64 0.19.7-2ubuntu3.1 [48.0 kB] build 29-Mar-2019 14:40:38 Get:52 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libroken18-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [41.4 kB] build 29-Mar-2019 14:40:38 Get:53 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasn1-8-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [174 kB] build 29-Mar-2019 14:40:38 Get:54 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5support0 amd64 1.13.2+dfsg-5ubuntu2.1 [31.2 kB] build 29-Mar-2019 14:40:38 Get:55 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libk5crypto3 amd64 1.13.2+dfsg-5ubuntu2.1 [81.3 kB] build 29-Mar-2019 14:40:38 Get:56 http://archive.ubuntu.com/ubuntu xenial/main amd64 libkeyutils1 amd64 1.5.9-8ubuntu1 [9904 B] build 29-Mar-2019 14:40:38 Get:57 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5-3 amd64 1.13.2+dfsg-5ubuntu2.1 [273 kB] build 29-Mar-2019 14:40:38 Get:58 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgssapi-krb5-2 amd64 1.13.2+dfsg-5ubuntu2.1 [120 kB] build 29-Mar-2019 14:40:38 Get:59 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhcrypto4-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [85.0 kB] build 29-Mar-2019 14:40:38 Get:60 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libheimbase1-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [29.3 kB] build 29-Mar-2019 14:40:38 Get:61 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libwind0-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [47.8 kB] build 29-Mar-2019 14:40:39 Get:62 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhx509-5-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [107 kB] build 29-Mar-2019 14:40:39 Get:63 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5-26-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [202 kB] build 29-Mar-2019 14:40:39 Get:64 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libheimntlm0-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [15.1 kB] build 29-Mar-2019 14:40:39 Get:65 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgssapi3-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [96.1 kB] build 29-Mar-2019 14:40:39 Get:66 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libicu55 amd64 55.1-7ubuntu0.4 [7646 kB] build 29-Mar-2019 14:40:39 Get:67 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libsasl2-modules-db amd64 2.1.26.dfsg1-14ubuntu0.1 [14.5 kB] build 29-Mar-2019 14:40:39 Get:68 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libsasl2-2 amd64 2.1.26.dfsg1-14ubuntu0.1 [48.6 kB] build 29-Mar-2019 14:40:39 Get:69 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libldap-2.4-2 amd64 2.4.42+dfsg-2ubuntu3.4 [160 kB] build 29-Mar-2019 14:40:39 Get:70 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d-1ubuntu0.1 [54.4 kB] build 29-Mar-2019 14:40:39 Get:71 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libxml2 amd64 2.9.3+dfsg1-1ubuntu0.6 [697 kB] build 29-Mar-2019 14:40:39 Get:72 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxmuu1 amd64 2:1.1.2-2 [9674 B] build 29-Mar-2019 14:40:39 Get:73 http://archive.ubuntu.com/ubuntu xenial/main amd64 xauth amd64 1:1.0.9-1ubuntu2 [22.7 kB] build 29-Mar-2019 14:40:39 Get:74 http://archive.ubuntu.com/ubuntu xenial/main amd64 m4 amd64 1.4.17-5 [195 kB] build 29-Mar-2019 14:40:39 Get:75 http://archive.ubuntu.com/ubuntu xenial/main amd64 autoconf all 2.69-9 [321 kB] build 29-Mar-2019 14:40:39 Get:76 http://archive.ubuntu.com/ubuntu xenial/main amd64 autotools-dev all 20150820.1 [39.8 kB] build 29-Mar-2019 14:40:39 Get:77 http://archive.ubuntu.com/ubuntu xenial/main amd64 automake all 1:1.15-4ubuntu1 [510 kB] build 29-Mar-2019 14:40:39 Get:78 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 binutils amd64 2.26.1-1ubuntu1~16.04.8 [2312 kB] build 29-Mar-2019 14:40:39 Get:79 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc-dev-bin amd64 2.23-0ubuntu11 [68.5 kB] build 29-Mar-2019 14:40:39 Get:80 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 linux-libc-dev amd64 4.4.0-143.169 [870 kB] build 29-Mar-2019 14:40:39 Get:81 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc6-dev amd64 2.23-0ubuntu11 [2086 kB] build 29-Mar-2019 14:40:39 Get:82 http://archive.ubuntu.com/ubuntu xenial/main amd64 libisl15 amd64 0.16.1-1 [524 kB] build 29-Mar-2019 14:40:39 Get:83 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 cpp-5 amd64 5.4.0-6ubuntu1~16.04.11 [7660 kB] build 29-Mar-2019 14:40:40 Get:84 http://archive.ubuntu.com/ubuntu xenial/main amd64 cpp amd64 4:5.3.1-1ubuntu1 [27.7 kB] build 29-Mar-2019 14:40:40 Get:85 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcc1-0 amd64 5.4.0-6ubuntu1~16.04.11 [38.8 kB] build 29-Mar-2019 14:40:40 Get:86 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgomp1 amd64 5.4.0-6ubuntu1~16.04.11 [55.0 kB] build 29-Mar-2019 14:40:40 Get:87 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libitm1 amd64 5.4.0-6ubuntu1~16.04.11 [27.4 kB] build 29-Mar-2019 14:40:40 Get:88 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libatomic1 amd64 5.4.0-6ubuntu1~16.04.11 [8896 B] build 29-Mar-2019 14:40:40 Get:89 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasan2 amd64 5.4.0-6ubuntu1~16.04.11 [264 kB] build 29-Mar-2019 14:40:40 Get:90 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 liblsan0 amd64 5.4.0-6ubuntu1~16.04.11 [105 kB] build 29-Mar-2019 14:40:40 Get:91 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtsan0 amd64 5.4.0-6ubuntu1~16.04.11 [244 kB] build 29-Mar-2019 14:40:40 Get:92 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libubsan0 amd64 5.4.0-6ubuntu1~16.04.11 [95.4 kB] build 29-Mar-2019 14:40:40 Get:93 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcilkrts5 amd64 5.4.0-6ubuntu1~16.04.11 [40.1 kB] build 29-Mar-2019 14:40:40 Get:94 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmpx0 amd64 5.4.0-6ubuntu1~16.04.11 [9748 B] build 29-Mar-2019 14:40:40 Get:95 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libquadmath0 amd64 5.4.0-6ubuntu1~16.04.11 [131 kB] build 29-Mar-2019 14:40:40 Get:96 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgcc-5-dev amd64 5.4.0-6ubuntu1~16.04.11 [2229 kB] build 29-Mar-2019 14:40:40 Get:97 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gcc-5 amd64 5.4.0-6ubuntu1~16.04.11 [8417 kB] build 29-Mar-2019 14:40:40 Get:98 http://archive.ubuntu.com/ubuntu xenial/main amd64 gcc amd64 4:5.3.1-1ubuntu1 [5244 B] build 29-Mar-2019 14:40:40 Get:99 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libstdc++-5-dev amd64 5.4.0-6ubuntu1~16.04.11 [1426 kB] build 29-Mar-2019 14:40:40 Get:100 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 g++-5 amd64 5.4.0-6ubuntu1~16.04.11 [8310 kB] build 29-Mar-2019 14:40:40 Get:101 http://archive.ubuntu.com/ubuntu xenial/main amd64 g++ amd64 4:5.3.1-1ubuntu1 [1504 B] build 29-Mar-2019 14:40:40 Get:102 http://archive.ubuntu.com/ubuntu xenial/main amd64 make amd64 4.1-6 [151 kB] build 29-Mar-2019 14:40:40 Get:103 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdpkg-perl all 1.18.4ubuntu1.5 [195 kB] build 29-Mar-2019 14:40:41 Get:104 http://archive.ubuntu.com/ubuntu xenial/main amd64 xz-utils amd64 5.1.1alpha+20120614-2ubuntu2 [78.8 kB] build 29-Mar-2019 14:40:41 Get:105 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 patch amd64 2.7.5-1ubuntu0.16.04.1 [90.5 kB] build 29-Mar-2019 14:40:41 Get:106 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 dpkg-dev all 1.18.4ubuntu1.5 [584 kB] build 29-Mar-2019 14:40:41 Get:107 http://archive.ubuntu.com/ubuntu xenial/main amd64 build-essential amd64 12.1ubuntu2 [4758 B] build 29-Mar-2019 14:40:41 Get:108 http://archive.ubuntu.com/ubuntu xenial/main amd64 libcroco3 amd64 0.6.11-1 [81.6 kB] build 29-Mar-2019 14:40:41 Get:109 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gettext amd64 0.19.7-2ubuntu3.1 [1082 kB] build 29-Mar-2019 14:40:41 Get:110 http://archive.ubuntu.com/ubuntu xenial/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] build 29-Mar-2019 14:40:41 Get:111 http://archive.ubuntu.com/ubuntu xenial/main amd64 po-debconf all 1.0.19 [234 kB] build 29-Mar-2019 14:40:41 Get:112 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libarchive-zip-perl all 1.56-2ubuntu0.1 [84.7 kB] build 29-Mar-2019 14:40:41 Get:113 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfile-stripnondeterminism-perl all 0.015-1 [10.3 kB] build 29-Mar-2019 14:40:41 Get:114 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] build 29-Mar-2019 14:40:41 Get:115 http://archive.ubuntu.com/ubuntu xenial/main amd64 dh-strip-nondeterminism all 0.015-1 [4864 B] build 29-Mar-2019 14:40:41 Get:116 http://archive.ubuntu.com/ubuntu xenial/main amd64 debhelper all 9.20160115ubuntu3 [739 kB] build 29-Mar-2019 14:40:41 Get:117 http://archive.ubuntu.com/ubuntu xenial/main amd64 liburi-perl all 1.71-1 [76.9 kB] build 29-Mar-2019 14:40:41 Get:118 http://archive.ubuntu.com/ubuntu xenial/main amd64 libencode-locale-perl all 1.05-1 [12.3 kB] build 29-Mar-2019 14:40:42 Get:119 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-date-perl all 6.02-1 [10.4 kB] build 29-Mar-2019 14:40:42 Get:120 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfile-listing-perl all 6.04-1 [9774 B] build 29-Mar-2019 14:40:42 Get:121 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhtml-tagset-perl all 3.20-2 [13.5 kB] build 29-Mar-2019 14:40:42 Get:122 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhtml-parser-perl amd64 3.72-1 [86.1 kB] build 29-Mar-2019 14:40:42 Get:123 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhtml-tree-perl all 5.03-2 [197 kB] build 29-Mar-2019 14:40:42 Get:124 http://archive.ubuntu.com/ubuntu xenial/main amd64 libio-html-perl all 1.001-1 [14.9 kB] build 29-Mar-2019 14:40:42 Get:125 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblwp-mediatypes-perl all 6.02-1 [21.7 kB] build 29-Mar-2019 14:40:42 Get:126 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-message-perl all 6.11-1 [74.3 kB] build 29-Mar-2019 14:40:42 Get:127 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-cookies-perl all 6.01-1 [17.2 kB] build 29-Mar-2019 14:40:42 Get:128 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-negotiate-perl all 6.00-2 [13.4 kB] build 29-Mar-2019 14:40:42 Get:129 http://archive.ubuntu.com/ubuntu xenial/main amd64 libnet-ssleay-perl amd64 1.72-1build1 [259 kB] build 29-Mar-2019 14:40:42 Get:130 http://archive.ubuntu.com/ubuntu xenial/main amd64 libio-socket-ssl-perl all 2.024-1 [159 kB] build 29-Mar-2019 14:40:42 Get:131 http://archive.ubuntu.com/ubuntu xenial/main amd64 libnet-http-perl all 6.09-1 [24.0 kB] build 29-Mar-2019 14:40:42 Get:132 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblwp-protocol-https-perl all 6.06-2 [8682 B] build 29-Mar-2019 14:40:42 Get:133 http://archive.ubuntu.com/ubuntu xenial/main amd64 libwww-robotrules-perl all 6.01-1 [14.1 kB] build 29-Mar-2019 14:40:42 Get:134 http://archive.ubuntu.com/ubuntu xenial/main amd64 libwww-perl all 6.15-1 [146 kB] build 29-Mar-2019 14:40:42 Get:135 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxml-parser-perl amd64 2.44-1build1 [200 kB] build 29-Mar-2019 14:40:42 Get:136 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 intltool all 0.51.0-2ubuntu1.16.04.1 [45.0 kB] build 29-Mar-2019 14:40:42 Get:137 http://archive.ubuntu.com/ubuntu xenial/main amd64 dh-translations all 129 [22.1 kB] build 29-Mar-2019 14:40:42 Get:138 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-six all 1.10.0-3 [10.9 kB] build 29-Mar-2019 14:40:42 Get:139 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-pkg-resources all 20.7.0-1 [108 kB] build 29-Mar-2019 14:40:42 Get:140 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-scour all 0.32-1 [42.7 kB] build 29-Mar-2019 14:40:42 Get:141 http://archive.ubuntu.com/ubuntu xenial/main amd64 cdbs all 0.4.130ubuntu2 [42.8 kB] build 29-Mar-2019 14:40:42 Get:142 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran3 amd64 5.4.0-6ubuntu1~16.04.11 [260 kB] build 29-Mar-2019 14:40:42 Get:143 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran-5-dev amd64 5.4.0-6ubuntu1~16.04.11 [291 kB] build 29-Mar-2019 14:40:42 Get:144 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gfortran-5 amd64 5.4.0-6ubuntu1~16.04.11 [8034 kB] build 29-Mar-2019 14:40:42 Get:145 http://archive.ubuntu.com/ubuntu xenial/main amd64 gfortran amd64 4:5.3.1-1ubuntu1 [1288 B] build 29-Mar-2019 14:40:42 Get:146 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 icu-devtools amd64 55.1-7ubuntu0.4 [166 kB] build 29-Mar-2019 14:40:42 Get:147 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas-common amd64 3.6.0-2ubuntu2 [5342 B] build 29-Mar-2019 14:40:42 Get:148 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas3 amd64 3.6.0-2ubuntu2 [147 kB] build 29-Mar-2019 14:40:42 Get:149 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas-dev amd64 3.6.0-2ubuntu2 [153 kB] build 29-Mar-2019 14:40:42 Get:150 http://archive.ubuntu.com/ubuntu xenial/main amd64 libbz2-dev amd64 1.0.6-8 [29.1 kB] build 29-Mar-2019 14:40:42 Get:151 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpixman-1-0 amd64 0.33.6-1 [231 kB] build 29-Mar-2019 14:40:42 Get:152 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-render0 amd64 1.11.1-1ubuntu1 [11.4 kB] build 29-Mar-2019 14:40:42 Get:153 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-shm0 amd64 1.11.1-1ubuntu1 [5588 B] build 29-Mar-2019 14:40:42 Get:154 http://archive.ubuntu.com/ubuntu xenial/main amd64 libcairo2 amd64 1.14.6-1 [555 kB] build 29-Mar-2019 14:40:42 Get:155 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcurl3 amd64 7.47.0-1ubuntu2.12 [187 kB] build 29-Mar-2019 14:40:42 Get:156 http://archive.ubuntu.com/ubuntu xenial/main amd64 libdatrie1 amd64 0.2.10-2 [17.3 kB] build 29-Mar-2019 14:40:42 Get:157 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgraphite2-3 amd64 1.3.10-0ubuntu0.16.04.1 [71.7 kB] build 29-Mar-2019 14:40:42 Get:158 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libharfbuzz0b amd64 1.0.1-1ubuntu0.1 [140 kB] build 29-Mar-2019 14:40:42 Get:159 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libicu-dev amd64 55.1-7ubuntu0.4 [8566 kB] build 29-Mar-2019 14:40:43 Get:160 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libjpeg-turbo8-dev amd64 1.4.2-0ubuntu3.1 [254 kB] build 29-Mar-2019 14:40:43 Get:161 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] build 29-Mar-2019 14:40:43 Get:162 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1552 B] build 29-Mar-2019 14:40:43 Get:163 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B] build 29-Mar-2019 14:40:43 Get:164 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblapack3 amd64 3.6.0-2ubuntu2 [1938 kB] build 29-Mar-2019 14:40:43 Get:165 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblapack-dev amd64 3.6.0-2ubuntu2 [1948 kB] build 29-Mar-2019 14:40:43 Get:166 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtinfo-dev amd64 6.0+20160213-1ubuntu1 [77.4 kB] build 29-Mar-2019 14:40:43 Get:167 http://archive.ubuntu.com/ubuntu xenial/main amd64 libncurses5-dev amd64 6.0+20160213-1ubuntu1 [175 kB] build 29-Mar-2019 14:40:43 Get:168 http://archive.ubuntu.com/ubuntu xenial/main amd64 libthai-data all 0.1.24-2 [131 kB] build 29-Mar-2019 14:40:43 Get:169 http://archive.ubuntu.com/ubuntu xenial/main amd64 libthai0 amd64 0.1.24-2 [17.3 kB] build 29-Mar-2019 14:40:43 Get:170 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpango-1.0-0 amd64 1.38.1-1 [148 kB] build 29-Mar-2019 14:40:43 Get:171 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpangoft2-1.0-0 amd64 1.38.1-1 [33.3 kB] build 29-Mar-2019 14:40:43 Get:172 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpangocairo-1.0-0 amd64 1.38.1-1 [20.5 kB] build 29-Mar-2019 14:40:43 Get:173 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpaper1 amd64 1.1.24+nmu4ubuntu1 [13.7 kB] build 29-Mar-2019 14:40:43 Get:174 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpaper-utils amd64 1.1.24+nmu4ubuntu1 [8276 B] build 29-Mar-2019 14:40:43 Get:175 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpcre16-3 amd64 2:8.38-3.1 [144 kB] build 29-Mar-2019 14:40:43 Get:176 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpcre32-3 amd64 2:8.38-3.1 [136 kB] build 29-Mar-2019 14:40:43 Get:177 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpcre3-dev amd64 2:8.38-3.1 [525 kB] build 29-Mar-2019 14:40:43 Get:178 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-2ubuntu4.1 [168 kB] build 29-Mar-2019 14:40:43 Get:179 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpng12-dev amd64 1.2.54-1ubuntu1.1 [183 kB] build 29-Mar-2019 14:40:43 Get:180 http://archive.ubuntu.com/ubuntu xenial/main amd64 libreadline6-dev amd64 6.3-8ubuntu2 [124 kB] build 29-Mar-2019 14:40:43 Get:181 http://archive.ubuntu.com/ubuntu xenial/main amd64 libreadline-dev amd64 6.3-8ubuntu2 [992 B] build 29-Mar-2019 14:40:43 Get:182 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtcl8.6 amd64 8.6.5+dfsg-2 [875 kB] build 29-Mar-2019 14:40:43 Get:183 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtiff5 amd64 4.0.6-1ubuntu0.6 [149 kB] build 29-Mar-2019 14:40:43 Get:184 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtk8.6 amd64 8.6.5-1 [693 kB] build 29-Mar-2019 14:40:43 Get:185 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxt6 amd64 1:1.1.5-0ubuntu1 [160 kB] build 29-Mar-2019 14:40:43 Get:186 http://archive.ubuntu.com/ubuntu xenial/main amd64 pkg-config amd64 0.29.1-0ubuntu1 [45.0 kB] build 29-Mar-2019 14:40:43 Get:187 http://archive.ubuntu.com/ubuntu xenial/main amd64 zip amd64 3.0-11 [158 kB] build 29-Mar-2019 14:40:43 Get:188 http://archive.ubuntu.com/ubuntu xenial/main amd64 unzip amd64 6.0-20ubuntu1 [158 kB] build 29-Mar-2019 14:40:43 Get:189 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 xdg-utils all 1.1.1-1ubuntu1.16.04.3 [59.6 kB] build 29-Mar-2019 14:40:43 Get:190 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblzma-dev amd64 5.1.1alpha+20120614-2ubuntu2 [137 kB] build 29-Mar-2019 14:40:44 debconf: delaying package configuration, since apt-utils is not installed build 29-Mar-2019 14:40:44 Fetched 116 MB in 6s (17.2 MB/s) build 29-Mar-2019 14:40:44 Selecting previously unselected package libgdbm3:amd64. build 29-Mar-2019 14:40:44 (Reading database ... build 29-Mar-2019 14:40:44 (Reading database ... 5% build 29-Mar-2019 14:40:44 (Reading database ... 10% build 29-Mar-2019 14:40:44 (Reading database ... 15% build 29-Mar-2019 14:40:44 (Reading database ... 20% build 29-Mar-2019 14:40:44 (Reading database ... 25% build 29-Mar-2019 14:40:44 (Reading database ... 30% build 29-Mar-2019 14:40:44 (Reading database ... 35% build 29-Mar-2019 14:40:44 (Reading database ... 40% build 29-Mar-2019 14:40:44 (Reading database ... 45% build 29-Mar-2019 14:40:44 (Reading database ... 50% build 29-Mar-2019 14:40:44 (Reading database ... 55% build 29-Mar-2019 14:40:44 (Reading database ... 60% build 29-Mar-2019 14:40:44 (Reading database ... 65% build 29-Mar-2019 14:40:44 (Reading database ... 70% build 29-Mar-2019 14:40:44 (Reading database ... 75% build 29-Mar-2019 14:40:44 (Reading database ... 80% build 29-Mar-2019 14:40:44 (Reading database ... 85% build 29-Mar-2019 14:40:44 (Reading database ... 90% build 29-Mar-2019 14:40:44 (Reading database ... 95% build 29-Mar-2019 14:40:44 (Reading database ... 100% build 29-Mar-2019 14:40:44 (Reading database ... 6036 files and directories currently installed.) build 29-Mar-2019 14:40:44 Preparing to unpack .../libgdbm3_1.8.3-13.1_amd64.deb ... build 29-Mar-2019 14:40:45 Unpacking libgdbm3:amd64 (1.8.3-13.1) ... build 29-Mar-2019 14:40:46 Selecting previously unselected package libglib2.0-0:amd64. build 29-Mar-2019 14:40:46 Preparing to unpack .../libglib2.0-0_2.48.2-0ubuntu4.1_amd64.deb ... build 29-Mar-2019 14:40:46 Unpacking libglib2.0-0:amd64 (2.48.2-0ubuntu4.1) ... build 29-Mar-2019 14:40:48 Selecting previously unselected package libxau6:amd64. build 29-Mar-2019 14:40:48 Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... build 29-Mar-2019 14:40:48 Unpacking libxau6:amd64 (1:1.0.8-1) ... build 29-Mar-2019 14:40:48 Selecting previously unselected package libxdmcp6:amd64. build 29-Mar-2019 14:40:48 Preparing to unpack .../libxdmcp6_1%3a1.1.2-1.1_amd64.deb ... build 29-Mar-2019 14:40:48 Unpacking libxdmcp6:amd64 (1:1.1.2-1.1) ... build 29-Mar-2019 14:40:49 Selecting previously unselected package libxcb1:amd64. build 29-Mar-2019 14:40:49 Preparing to unpack .../libxcb1_1.11.1-1ubuntu1_amd64.deb ... build 29-Mar-2019 14:40:49 Unpacking libxcb1:amd64 (1.11.1-1ubuntu1) ... build 29-Mar-2019 14:40:50 Selecting previously unselected package libx11-data. build 29-Mar-2019 14:40:50 Preparing to unpack .../libx11-data_2%3a1.6.3-1ubuntu2.1_all.deb ... build 29-Mar-2019 14:40:50 Unpacking libx11-data (2:1.6.3-1ubuntu2.1) ... build 29-Mar-2019 14:40:51 Selecting previously unselected package libx11-6:amd64. build 29-Mar-2019 14:40:51 Preparing to unpack .../libx11-6_2%3a1.6.3-1ubuntu2.1_amd64.deb ... build 29-Mar-2019 14:40:51 Unpacking libx11-6:amd64 (2:1.6.3-1ubuntu2.1) ... build 29-Mar-2019 14:40:52 Selecting previously unselected package libxext6:amd64. build 29-Mar-2019 14:40:52 Preparing to unpack .../libxext6_2%3a1.3.3-1_amd64.deb ... build 29-Mar-2019 14:40:52 Unpacking libxext6:amd64 (2:1.3.3-1) ... build 29-Mar-2019 14:40:53 Selecting previously unselected package groff-base. build 29-Mar-2019 14:40:53 Preparing to unpack .../groff-base_1.22.3-7_amd64.deb ... build 29-Mar-2019 14:40:53 Unpacking groff-base (1.22.3-7) ... build 29-Mar-2019 14:40:54 Selecting previously unselected package bsdmainutils. build 29-Mar-2019 14:40:54 Preparing to unpack .../bsdmainutils_9.0.6ubuntu3_amd64.deb ... build 29-Mar-2019 14:40:54 Unpacking bsdmainutils (9.0.6ubuntu3) ... build 29-Mar-2019 14:40:54 Selecting previously unselected package libpipeline1:amd64. build 29-Mar-2019 14:40:54 Preparing to unpack .../libpipeline1_1.4.1-2_amd64.deb ... build 29-Mar-2019 14:40:54 Unpacking libpipeline1:amd64 (1.4.1-2) ... build 29-Mar-2019 14:40:56 Selecting previously unselected package man-db. build 29-Mar-2019 14:40:56 Preparing to unpack .../man-db_2.7.5-1_amd64.deb ... build 29-Mar-2019 14:40:56 Unpacking man-db (2.7.5-1) ... build 29-Mar-2019 14:40:57 Selecting previously unselected package fonts-dejavu-core. build 29-Mar-2019 14:40:57 Preparing to unpack .../fonts-dejavu-core_2.35-1_all.deb ... build 29-Mar-2019 14:40:57 Unpacking fonts-dejavu-core (2.35-1) ... build 29-Mar-2019 14:40:58 Selecting previously unselected package ucf. build 29-Mar-2019 14:40:58 Preparing to unpack .../archives/ucf_3.0036_all.deb ... build 29-Mar-2019 14:40:58 Moving old data out of the way build 29-Mar-2019 14:40:58 Unpacking ucf (3.0036) ... build 29-Mar-2019 14:40:59 Selecting previously unselected package fontconfig-config. build 29-Mar-2019 14:40:59 Preparing to unpack .../fontconfig-config_2.11.94-0ubuntu1.1_all.deb ... build 29-Mar-2019 14:40:59 Unpacking fontconfig-config (2.11.94-0ubuntu1.1) ... build 29-Mar-2019 14:40:59 Selecting previously unselected package libpng12-0:amd64. build 29-Mar-2019 14:40:59 Preparing to unpack .../libpng12-0_1.2.54-1ubuntu1.1_amd64.deb ... build 29-Mar-2019 14:40:59 Unpacking libpng12-0:amd64 (1.2.54-1ubuntu1.1) ... build 29-Mar-2019 14:41:00 Selecting previously unselected package libfreetype6:amd64. build 29-Mar-2019 14:41:00 Preparing to unpack .../libfreetype6_2.6.1-0.1ubuntu2.3_amd64.deb ... build 29-Mar-2019 14:41:01 Unpacking libfreetype6:amd64 (2.6.1-0.1ubuntu2.3) ... build 29-Mar-2019 14:41:01 Selecting previously unselected 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29-Mar-2019 14:42:54 Selecting previously unselected package libthai-data. build 29-Mar-2019 14:42:54 Preparing to unpack .../libthai-data_0.1.24-2_all.deb ... build 29-Mar-2019 14:42:54 Unpacking libthai-data (0.1.24-2) ... build 29-Mar-2019 14:42:54 Selecting previously unselected package libthai0:amd64. build 29-Mar-2019 14:42:54 Preparing to unpack .../libthai0_0.1.24-2_amd64.deb ... build 29-Mar-2019 14:42:54 Unpacking libthai0:amd64 (0.1.24-2) ... build 29-Mar-2019 14:42:55 Selecting previously unselected package libpango-1.0-0:amd64. build 29-Mar-2019 14:42:55 Preparing to unpack .../libpango-1.0-0_1.38.1-1_amd64.deb ... build 29-Mar-2019 14:42:55 Unpacking libpango-1.0-0:amd64 (1.38.1-1) ... build 29-Mar-2019 14:42:55 Selecting previously unselected package libpangoft2-1.0-0:amd64. build 29-Mar-2019 14:42:55 Preparing to unpack .../libpangoft2-1.0-0_1.38.1-1_amd64.deb ... build 29-Mar-2019 14:42:55 Unpacking libpangoft2-1.0-0:amd64 (1.38.1-1) ... build 29-Mar-2019 14:42:56 Selecting previously unselected package libpangocairo-1.0-0:amd64. build 29-Mar-2019 14:42:56 Preparing to unpack .../libpangocairo-1.0-0_1.38.1-1_amd64.deb ... build 29-Mar-2019 14:42:56 Unpacking libpangocairo-1.0-0:amd64 (1.38.1-1) ... build 29-Mar-2019 14:42:56 Selecting previously unselected package libpaper1:amd64. build 29-Mar-2019 14:42:56 Preparing to unpack .../libpaper1_1.1.24+nmu4ubuntu1_amd64.deb ... build 29-Mar-2019 14:42:56 Unpacking libpaper1:amd64 (1.1.24+nmu4ubuntu1) ... build 29-Mar-2019 14:42:56 Selecting previously unselected package libpaper-utils. build 29-Mar-2019 14:42:56 Preparing to unpack .../libpaper-utils_1.1.24+nmu4ubuntu1_amd64.deb ... build 29-Mar-2019 14:42:56 Unpacking libpaper-utils (1.1.24+nmu4ubuntu1) ... build 29-Mar-2019 14:42:57 Selecting previously unselected package libpcre16-3:amd64. build 29-Mar-2019 14:42:57 Preparing to unpack .../libpcre16-3_2%3a8.38-3.1_amd64.deb ... build 29-Mar-2019 14:42:57 Unpacking libpcre16-3:amd64 (2:8.38-3.1) ... build 29-Mar-2019 14:42:57 Selecting previously unselected package libpcre32-3:amd64. build 29-Mar-2019 14:42:57 Preparing to unpack .../libpcre32-3_2%3a8.38-3.1_amd64.deb ... build 29-Mar-2019 14:42:57 Unpacking libpcre32-3:amd64 (2:8.38-3.1) ... build 29-Mar-2019 14:42:58 Selecting previously unselected package libpcre3-dev:amd64. build 29-Mar-2019 14:42:58 Preparing to unpack .../libpcre3-dev_2%3a8.38-3.1_amd64.deb ... build 29-Mar-2019 14:42:58 Unpacking libpcre3-dev:amd64 (2:8.38-3.1) ... build 29-Mar-2019 14:42:59 Selecting previously unselected package zlib1g-dev:amd64. build 29-Mar-2019 14:42:59 Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2ubuntu4.1_amd64.deb ... build 29-Mar-2019 14:42:59 Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4.1) ... build 29-Mar-2019 14:42:59 Selecting previously unselected package libpng12-dev:amd64. build 29-Mar-2019 14:42:59 Preparing to unpack .../libpng12-dev_1.2.54-1ubuntu1.1_amd64.deb ... build 29-Mar-2019 14:42:59 Unpacking libpng12-dev:amd64 (1.2.54-1ubuntu1.1) ... build 29-Mar-2019 14:43:00 Selecting previously unselected package libreadline6-dev:amd64. build 29-Mar-2019 14:43:00 Preparing to unpack .../libreadline6-dev_6.3-8ubuntu2_amd64.deb ... build 29-Mar-2019 14:43:00 Unpacking libreadline6-dev:amd64 (6.3-8ubuntu2) ... build 29-Mar-2019 14:43:00 Selecting previously unselected package libreadline-dev:amd64. build 29-Mar-2019 14:43:00 Preparing to unpack .../libreadline-dev_6.3-8ubuntu2_amd64.deb ... build 29-Mar-2019 14:43:00 Unpacking libreadline-dev:amd64 (6.3-8ubuntu2) ... build 29-Mar-2019 14:43:01 Selecting previously unselected package libtcl8.6:amd64. build 29-Mar-2019 14:43:01 Preparing to unpack .../libtcl8.6_8.6.5+dfsg-2_amd64.deb ... build 29-Mar-2019 14:43:01 Unpacking libtcl8.6:amd64 (8.6.5+dfsg-2) ... build 29-Mar-2019 14:43:01 Selecting previously unselected package libtiff5:amd64. build 29-Mar-2019 14:43:01 Preparing to unpack .../libtiff5_4.0.6-1ubuntu0.6_amd64.deb ... build 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build 29-Mar-2019 14:43:04 Selecting previously unselected package unzip. build 29-Mar-2019 14:43:04 Preparing to unpack .../unzip_6.0-20ubuntu1_amd64.deb ... build 29-Mar-2019 14:43:04 Unpacking unzip (6.0-20ubuntu1) ... build 29-Mar-2019 14:43:05 Selecting previously unselected package xdg-utils. build 29-Mar-2019 14:43:05 Preparing to unpack .../xdg-utils_1.1.1-1ubuntu1.16.04.3_all.deb ... build 29-Mar-2019 14:43:05 Unpacking xdg-utils (1.1.1-1ubuntu1.16.04.3) ... build 29-Mar-2019 14:43:05 Selecting previously unselected package r-base-core. build 29-Mar-2019 14:43:05 Preparing to unpack .../r-base-core_3.4.4-1xenial0_amd64.deb ... build 29-Mar-2019 14:43:05 Unpacking r-base-core (3.4.4-1xenial0) ... build 29-Mar-2019 14:43:08 Selecting previously unselected package liblzma-dev:amd64. build 29-Mar-2019 14:43:08 Preparing to unpack .../liblzma-dev_5.1.1alpha+20120614-2ubuntu2_amd64.deb ... build 29-Mar-2019 14:43:08 Unpacking liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... build 29-Mar-2019 14:43:08 Selecting previously unselected package r-base-dev. build 29-Mar-2019 14:43:08 Preparing to unpack .../r-base-dev_3.4.4-1xenial0_all.deb ... build 29-Mar-2019 14:43:09 Unpacking r-base-dev (3.4.4-1xenial0) ... build 29-Mar-2019 14:43:09 Processing triggers for libc-bin (2.23-0ubuntu11) ... build 29-Mar-2019 14:43:09 Processing triggers for mime-support (3.59ubuntu1) ... build 29-Mar-2019 14:43:09 Processing triggers for systemd (229-4ubuntu21.16) ... build 29-Mar-2019 14:43:09 Setting up libgdbm3:amd64 (1.8.3-13.1) ... build 29-Mar-2019 14:43:09 Setting up libglib2.0-0:amd64 (2.48.2-0ubuntu4.1) ... build 29-Mar-2019 14:43:10 No schema files found: doing nothing. build 29-Mar-2019 14:43:10 Setting up libxau6:amd64 (1:1.0.8-1) ... build 29-Mar-2019 14:43:10 Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... build 29-Mar-2019 14:43:10 Setting up libxcb1:amd64 (1.11.1-1ubuntu1) ... build 29-Mar-2019 14:43:11 Setting up libx11-data (2:1.6.3-1ubuntu2.1) ... build 29-Mar-2019 14:43:11 Setting up libx11-6:amd64 (2:1.6.3-1ubuntu2.1) ... build 29-Mar-2019 14:43:11 Setting up libxext6:amd64 (2:1.3.3-1) ... build 29-Mar-2019 14:43:12 Setting up groff-base (1.22.3-7) ... build 29-Mar-2019 14:43:12 Setting up bsdmainutils (9.0.6ubuntu3) ... build 29-Mar-2019 14:43:12 update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode build 29-Mar-2019 14:43:12 update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode build 29-Mar-2019 14:43:12 Setting up libpipeline1:amd64 (1.4.1-2) ... build 29-Mar-2019 14:43:12 Setting up man-db (2.7.5-1) ... build 29-Mar-2019 14:43:13 debconf: unable to initialize frontend: Dialog build 29-Mar-2019 14:43:13 debconf: (TERM is not set, so the dialog frontend is not usable.) build 29-Mar-2019 14:43:13 debconf: falling back to frontend: Readline build 29-Mar-2019 14:43:13 Building database of manual pages ... build 29-Mar-2019 14:43:22 Setting up fonts-dejavu-core (2.35-1) ... build 29-Mar-2019 14:43:23 Setting up ucf (3.0036) ... build 29-Mar-2019 14:43:23 debconf: unable to initialize frontend: Dialog build 29-Mar-2019 14:43:23 debconf: (TERM is not set, so the dialog frontend is not usable.) build 29-Mar-2019 14:43:23 debconf: falling back to frontend: Readline build 29-Mar-2019 14:43:23 Setting up fontconfig-config (2.11.94-0ubuntu1.1) ... build 29-Mar-2019 14:43:25 Setting up libpng12-0:amd64 (1.2.54-1ubuntu1.1) ... build 29-Mar-2019 14:43:25 Setting up libfreetype6:amd64 (2.6.1-0.1ubuntu2.3) ... build 29-Mar-2019 14:43:26 Setting up libfontconfig1:amd64 (2.11.94-0ubuntu1.1) ... build 29-Mar-2019 14:43:26 Setting up fontconfig (2.11.94-0ubuntu1.1) ... build 29-Mar-2019 14:43:28 Regenerating fonts cache... done. build 29-Mar-2019 14:43:28 Setting up x11-common (1:7.7+13ubuntu3.1) ... build 29-Mar-2019 14:43:29 debconf: unable to initialize frontend: Dialog build 29-Mar-2019 14:43:29 debconf: (TERM is not set, so the dialog frontend is not usable.) build 29-Mar-2019 14:43:29 debconf: falling back to frontend: Readline build 29-Mar-2019 14:43:29 update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults build 29-Mar-2019 14:43:29 invoke-rc.d: could not determine current runlevel build 29-Mar-2019 14:43:29 invoke-rc.d: policy-rc.d denied execution of start. build 29-Mar-2019 14:43:29 Setting up libice6:amd64 (2:1.0.9-1) ... build 29-Mar-2019 14:43:30 Setting up libjpeg-turbo8:amd64 (1.4.2-0ubuntu3.1) ... build 29-Mar-2019 14:43:30 Setting up libpcrecpp0v5:amd64 (2:8.38-3.1) ... build 29-Mar-2019 14:43:30 Setting up libsigsegv2:amd64 (2.10-4) ... build 29-Mar-2019 14:43:30 Setting up libsm6:amd64 (2:1.2.2-1) ... build 29-Mar-2019 14:43:30 Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... build 29-Mar-2019 14:43:31 Setting up libxrender1:amd64 (1:0.9.9-0ubuntu1) ... build 29-Mar-2019 14:43:31 Setting up libxft2:amd64 (2.3.2-1) ... build 29-Mar-2019 14:43:32 Setting up libxss1:amd64 (1:1.2.2-1) ... build 29-Mar-2019 14:43:32 Setting up perl-modules-5.22 (5.22.1-9ubuntu0.6) ... build 29-Mar-2019 14:43:32 Setting up libperl5.22:amd64 (5.22.1-9ubuntu0.6) ... build 29-Mar-2019 14:43:32 Setting up perl (5.22.1-9ubuntu0.6) ... build 29-Mar-2019 14:43:32 update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode build 29-Mar-2019 14:43:32 Setting up libjbig0:amd64 (2.1-3.1) ... build 29-Mar-2019 14:43:33 Setting up libgmp10:amd64 (2:6.1.0+dfsg-2) ... build 29-Mar-2019 14:43:33 Setting up libmpfr4:amd64 (3.1.4-1) ... build 29-Mar-2019 14:43:33 Setting up libmpc3:amd64 (1.0.3-1) ... build 29-Mar-2019 14:43:33 Setting up tzdata (2018i-0ubuntu0.16.04) ... build 29-Mar-2019 14:43:33 debconf: unable to initialize frontend: Dialog build 29-Mar-2019 14:43:33 debconf: (TERM is not set, so the dialog frontend is not usable.) build 29-Mar-2019 14:43:33 debconf: falling back to frontend: Readline build 29-Mar-2019 14:43:33 build 29-Mar-2019 14:43:33 Current default time zone: 'Etc/UTC' build 29-Mar-2019 14:43:33 Local time is now: Fri Mar 29 19:43:33 UTC 2019. build 29-Mar-2019 14:43:33 Universal Time is now: Fri Mar 29 19:43:33 UTC 2019. build 29-Mar-2019 14:43:33 Run 'dpkg-reconfigure tzdata' if you wish to change it. build 29-Mar-2019 14:43:33 build 29-Mar-2019 14:43:33 Setting up bzip2 (1.0.6-8) ... build 29-Mar-2019 14:43:34 Setting up libmagic1:amd64 (1:5.25-2ubuntu1.2) ... build 29-Mar-2019 14:43:34 Setting up file (1:5.25-2ubuntu1.2) ... build 29-Mar-2019 14:43:34 Setting up libnettle6:amd64 (3.2-1ubuntu0.16.04.1) ... build 29-Mar-2019 14:43:34 Setting up libhogweed4:amd64 (3.2-1ubuntu0.16.04.1) ... build 29-Mar-2019 14:43:34 Setting up libidn11:amd64 (1.32-3ubuntu1.2) ... build 29-Mar-2019 14:43:34 Setting up libp11-kit0:amd64 (0.23.2-5~ubuntu16.04.1) ... build 29-Mar-2019 14:43:35 Setting up libtasn1-6:amd64 (4.7-3ubuntu0.16.04.3) ... build 29-Mar-2019 14:43:35 Setting up libgnutls30:amd64 (3.4.10-4ubuntu1.4) ... build 29-Mar-2019 14:43:35 Setting up netbase (5.3) ... build 29-Mar-2019 14:43:35 Setting up libasprintf0v5:amd64 (0.19.7-2ubuntu3.1) ... build 29-Mar-2019 14:43:35 Setting up gettext-base (0.19.7-2ubuntu3.1) ... build 29-Mar-2019 14:43:36 Setting up libroken18-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 29-Mar-2019 14:43:36 Setting up libasn1-8-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 29-Mar-2019 14:43:36 Setting up libkrb5support0:amd64 (1.13.2+dfsg-5ubuntu2.1) ... build 29-Mar-2019 14:43:37 Setting up libk5crypto3:amd64 (1.13.2+dfsg-5ubuntu2.1) ... build 29-Mar-2019 14:43:37 Setting up libkeyutils1:amd64 (1.5.9-8ubuntu1) ... build 29-Mar-2019 14:43:37 Setting up libkrb5-3:amd64 (1.13.2+dfsg-5ubuntu2.1) ... build 29-Mar-2019 14:43:37 Setting up libgssapi-krb5-2:amd64 (1.13.2+dfsg-5ubuntu2.1) ... build 29-Mar-2019 14:43:38 Setting up libhcrypto4-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 29-Mar-2019 14:43:38 Setting up libheimbase1-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 29-Mar-2019 14:43:38 Setting up libwind0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 29-Mar-2019 14:43:38 Setting up libhx509-5-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 29-Mar-2019 14:43:38 Setting up libkrb5-26-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 29-Mar-2019 14:43:38 Setting up libheimntlm0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 29-Mar-2019 14:43:38 Setting up libgssapi3-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 29-Mar-2019 14:43:39 Setting up libicu55:amd64 (55.1-7ubuntu0.4) ... build 29-Mar-2019 14:43:39 Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-14ubuntu0.1) ... build 29-Mar-2019 14:43:39 Setting up libsasl2-2:amd64 (2.1.26.dfsg1-14ubuntu0.1) ... build 29-Mar-2019 14:43:39 Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2ubuntu3.4) ... build 29-Mar-2019 14:43:40 Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d-1ubuntu0.1) ... build 29-Mar-2019 14:43:40 Setting up libxml2:amd64 (2.9.3+dfsg1-1ubuntu0.6) ... build 29-Mar-2019 14:43:40 Setting up libxmuu1:amd64 (2:1.1.2-2) ... build 29-Mar-2019 14:43:40 Setting up xauth (1:1.0.9-1ubuntu2) ... build 29-Mar-2019 14:43:41 Setting up m4 (1.4.17-5) ... build 29-Mar-2019 14:43:41 Setting up autoconf (2.69-9) ... build 29-Mar-2019 14:43:41 Setting up autotools-dev (20150820.1) ... build 29-Mar-2019 14:43:41 Setting up automake (1:1.15-4ubuntu1) ... build 29-Mar-2019 14:43:41 update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode build 29-Mar-2019 14:43:41 Setting up binutils (2.26.1-1ubuntu1~16.04.8) ... build 29-Mar-2019 14:43:42 Setting up libc-dev-bin (2.23-0ubuntu11) ... build 29-Mar-2019 14:43:42 Setting up linux-libc-dev:amd64 (4.4.0-143.169) ... build 29-Mar-2019 14:43:43 Setting up libc6-dev:amd64 (2.23-0ubuntu11) ... build 29-Mar-2019 14:43:43 Setting up libisl15:amd64 (0.16.1-1) ... build 29-Mar-2019 14:43:43 Setting up cpp-5 (5.4.0-6ubuntu1~16.04.11) ... build 29-Mar-2019 14:43:43 Setting up cpp (4:5.3.1-1ubuntu1) ... build 29-Mar-2019 14:43:44 Setting up libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 29-Mar-2019 14:43:44 Setting up libgomp1:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 29-Mar-2019 14:43:44 Setting up libitm1:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 29-Mar-2019 14:43:44 Setting up libatomic1:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 29-Mar-2019 14:43:44 Setting up libasan2:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 29-Mar-2019 14:43:44 Setting up liblsan0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 29-Mar-2019 14:43:44 Setting up libtsan0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 29-Mar-2019 14:43:45 Setting up libubsan0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 29-Mar-2019 14:43:45 Setting up libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 29-Mar-2019 14:43:45 Setting up libmpx0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 29-Mar-2019 14:43:45 Setting up libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 29-Mar-2019 14:43:45 Setting up libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 29-Mar-2019 14:43:45 Setting up gcc-5 (5.4.0-6ubuntu1~16.04.11) ... build 29-Mar-2019 14:43:46 Setting up gcc (4:5.3.1-1ubuntu1) ... build 29-Mar-2019 14:43:46 Setting up libstdc++-5-dev:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 29-Mar-2019 14:43:46 Setting up g++-5 (5.4.0-6ubuntu1~16.04.11) ... build 29-Mar-2019 14:43:46 Setting up g++ (4:5.3.1-1ubuntu1) ... build 29-Mar-2019 14:43:46 update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode build 29-Mar-2019 14:43:46 Setting up make (4.1-6) ... build 29-Mar-2019 14:43:46 Setting up libdpkg-perl (1.18.4ubuntu1.5) ... build 29-Mar-2019 14:43:47 Setting up xz-utils (5.1.1alpha+20120614-2ubuntu2) ... build 29-Mar-2019 14:43:47 update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode build 29-Mar-2019 14:43:47 Setting up patch (2.7.5-1ubuntu0.16.04.1) ... build 29-Mar-2019 14:43:47 Setting up dpkg-dev (1.18.4ubuntu1.5) ... build 29-Mar-2019 14:43:47 Setting up build-essential (12.1ubuntu2) ... build 29-Mar-2019 14:43:47 Setting up libcroco3:amd64 (0.6.11-1) ... build 29-Mar-2019 14:43:47 Setting up gettext (0.19.7-2ubuntu3.1) ... build 29-Mar-2019 14:43:48 Setting up intltool-debian (0.35.0+20060710.4) ... build 29-Mar-2019 14:43:48 Setting up po-debconf (1.0.19) ... build 29-Mar-2019 14:43:48 Setting up libarchive-zip-perl (1.56-2ubuntu0.1) ... build 29-Mar-2019 14:43:49 Setting up libfile-stripnondeterminism-perl (0.015-1) ... build 29-Mar-2019 14:43:49 Setting up libtimedate-perl (2.3000-2) ... build 29-Mar-2019 14:43:49 Setting up liburi-perl (1.71-1) ... build 29-Mar-2019 14:43:49 Setting up libencode-locale-perl (1.05-1) ... build 29-Mar-2019 14:43:49 Setting up libhttp-date-perl (6.02-1) ... build 29-Mar-2019 14:43:50 Setting up libfile-listing-perl (6.04-1) ... build 29-Mar-2019 14:43:50 Setting up libhtml-tagset-perl (3.20-2) ... build 29-Mar-2019 14:43:50 Setting up libhtml-parser-perl (3.72-1) ... build 29-Mar-2019 14:43:50 Setting up libhtml-tree-perl (5.03-2) ... build 29-Mar-2019 14:43:50 Setting up libio-html-perl (1.001-1) ... build 29-Mar-2019 14:43:50 Setting up liblwp-mediatypes-perl (6.02-1) ... build 29-Mar-2019 14:43:51 Setting up libhttp-message-perl (6.11-1) ... build 29-Mar-2019 14:43:51 Setting up libhttp-cookies-perl (6.01-1) ... build 29-Mar-2019 14:43:51 Setting up libhttp-negotiate-perl (6.00-2) ... build 29-Mar-2019 14:43:51 Setting up libnet-ssleay-perl (1.72-1build1) ... build 29-Mar-2019 14:43:51 Setting up libio-socket-ssl-perl (2.024-1) ... build 29-Mar-2019 14:43:52 Setting up libnet-http-perl (6.09-1) ... build 29-Mar-2019 14:43:52 Setting up libwww-robotrules-perl (6.01-1) ... build 29-Mar-2019 14:43:52 Setting up python-six (1.10.0-3) ... build 29-Mar-2019 14:43:53 Setting up python-pkg-resources (20.7.0-1) ... build 29-Mar-2019 14:43:54 Setting up python-scour (0.32-1) ... build 29-Mar-2019 14:43:55 Setting up libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 29-Mar-2019 14:43:56 Setting up libgfortran-5-dev:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 29-Mar-2019 14:43:56 Setting up gfortran-5 (5.4.0-6ubuntu1~16.04.11) ... build 29-Mar-2019 14:43:56 Setting up gfortran (4:5.3.1-1ubuntu1) ... build 29-Mar-2019 14:43:56 update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode build 29-Mar-2019 14:43:56 update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode build 29-Mar-2019 14:43:56 Setting up icu-devtools (55.1-7ubuntu0.4) ... build 29-Mar-2019 14:43:56 Setting up libblas-common (3.6.0-2ubuntu2) ... build 29-Mar-2019 14:43:56 Setting up libblas3 (3.6.0-2ubuntu2) ... build 29-Mar-2019 14:43:56 update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode build 29-Mar-2019 14:43:57 Setting up libblas-dev (3.6.0-2ubuntu2) ... build 29-Mar-2019 14:43:57 update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode build 29-Mar-2019 14:43:57 Setting up libbz2-dev:amd64 (1.0.6-8) ... build 29-Mar-2019 14:43:57 Setting up libpixman-1-0:amd64 (0.33.6-1) ... build 29-Mar-2019 14:43:57 Setting up libxcb-render0:amd64 (1.11.1-1ubuntu1) ... build 29-Mar-2019 14:43:57 Setting up libxcb-shm0:amd64 (1.11.1-1ubuntu1) ... build 29-Mar-2019 14:43:57 Setting up libcairo2:amd64 (1.14.6-1) ... build 29-Mar-2019 14:43:58 Setting up libcurl3:amd64 (7.47.0-1ubuntu2.12) ... build 29-Mar-2019 14:43:58 Setting up libdatrie1:amd64 (0.2.10-2) ... build 29-Mar-2019 14:43:58 Setting up libgraphite2-3:amd64 (1.3.10-0ubuntu0.16.04.1) ... build 29-Mar-2019 14:43:59 Setting up libharfbuzz0b:amd64 (1.0.1-1ubuntu0.1) ... build 29-Mar-2019 14:43:59 Setting up libicu-dev:amd64 (55.1-7ubuntu0.4) ... build 29-Mar-2019 14:43:59 Setting up libjpeg-turbo8-dev:amd64 (1.4.2-0ubuntu3.1) ... build 29-Mar-2019 14:43:59 Setting up libjpeg8:amd64 (8c-2ubuntu8) ... build 29-Mar-2019 14:43:59 Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... build 29-Mar-2019 14:43:59 Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... build 29-Mar-2019 14:44:00 Setting up liblapack3 (3.6.0-2ubuntu2) ... build 29-Mar-2019 14:44:00 update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode build 29-Mar-2019 14:44:00 Setting up liblapack-dev (3.6.0-2ubuntu2) ... build 29-Mar-2019 14:44:00 update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode build 29-Mar-2019 14:44:00 Setting up libtinfo-dev:amd64 (6.0+20160213-1ubuntu1) ... build 29-Mar-2019 14:44:00 Setting up libncurses5-dev:amd64 (6.0+20160213-1ubuntu1) ... build 29-Mar-2019 14:44:00 Setting up libthai-data (0.1.24-2) ... build 29-Mar-2019 14:44:00 Setting up libthai0:amd64 (0.1.24-2) ... build 29-Mar-2019 14:44:01 Setting up libpango-1.0-0:amd64 (1.38.1-1) ... build 29-Mar-2019 14:44:01 Setting up libpangoft2-1.0-0:amd64 (1.38.1-1) ... build 29-Mar-2019 14:44:01 Setting up libpangocairo-1.0-0:amd64 (1.38.1-1) ... build 29-Mar-2019 14:44:01 Setting up libpaper1:amd64 (1.1.24+nmu4ubuntu1) ... build 29-Mar-2019 14:44:01 debconf: unable to initialize frontend: Dialog build 29-Mar-2019 14:44:01 debconf: (TERM is not set, so the dialog frontend is not usable.) build 29-Mar-2019 14:44:01 debconf: falling back to frontend: Readline build 29-Mar-2019 14:44:01 build 29-Mar-2019 14:44:01 Creating config file /etc/papersize with new version build 29-Mar-2019 14:44:01 Setting up libpaper-utils (1.1.24+nmu4ubuntu1) ... build 29-Mar-2019 14:44:02 Setting up libpcre16-3:amd64 (2:8.38-3.1) ... build 29-Mar-2019 14:44:02 Setting up libpcre32-3:amd64 (2:8.38-3.1) ... build 29-Mar-2019 14:44:02 Setting up libpcre3-dev:amd64 (2:8.38-3.1) ... build 29-Mar-2019 14:44:02 Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4.1) ... build 29-Mar-2019 14:44:02 Setting up libpng12-dev:amd64 (1.2.54-1ubuntu1.1) ... build 29-Mar-2019 14:44:02 Setting up libreadline6-dev:amd64 (6.3-8ubuntu2) ... build 29-Mar-2019 14:44:02 Setting up libreadline-dev:amd64 (6.3-8ubuntu2) ... build 29-Mar-2019 14:44:03 Setting up libtcl8.6:amd64 (8.6.5+dfsg-2) ... build 29-Mar-2019 14:44:03 Setting up libtiff5:amd64 (4.0.6-1ubuntu0.6) ... build 29-Mar-2019 14:44:03 Setting up libtk8.6:amd64 (8.6.5-1) ... build 29-Mar-2019 14:44:03 Setting up libxt6:amd64 (1:1.1.5-0ubuntu1) ... build 29-Mar-2019 14:44:04 Setting up pkg-config (0.29.1-0ubuntu1) ... build 29-Mar-2019 14:44:04 Setting up zip (3.0-11) ... build 29-Mar-2019 14:44:04 Setting up unzip (6.0-20ubuntu1) ... build 29-Mar-2019 14:44:04 Setting up xdg-utils (1.1.1-1ubuntu1.16.04.3) ... build 29-Mar-2019 14:44:04 Setting up r-base-core (3.4.4-1xenial0) ... build 29-Mar-2019 14:44:05 debconf: unable to initialize frontend: Dialog build 29-Mar-2019 14:44:05 debconf: (TERM is not set, so the dialog frontend is not usable.) build 29-Mar-2019 14:44:05 debconf: falling back to frontend: Readline build 29-Mar-2019 14:44:05 build 29-Mar-2019 14:44:05 Creating config file /etc/R/Renviron with new version build 29-Mar-2019 14:44:05 Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... build 29-Mar-2019 14:44:05 Setting up debhelper (9.20160115ubuntu3) ... build 29-Mar-2019 14:44:05 Setting up libwww-perl (6.15-1) ... build 29-Mar-2019 14:44:06 Setting up libxml-parser-perl (2.44-1build1) ... build 29-Mar-2019 14:44:06 Setting up intltool (0.51.0-2ubuntu1.16.04.1) ... build 29-Mar-2019 14:44:06 Setting up dh-translations (129) ... build 29-Mar-2019 14:44:06 Setting up cdbs (0.4.130ubuntu2) ... build 29-Mar-2019 14:44:06 Setting up r-base-dev (3.4.4-1xenial0) ... build 29-Mar-2019 14:44:06 Setting up dh-strip-nondeterminism (0.015-1) ... build 29-Mar-2019 14:44:07 Setting up liblwp-protocol-https-perl (6.06-2) ... build 29-Mar-2019 14:44:07 Processing triggers for libc-bin (2.23-0ubuntu11) ... build 29-Mar-2019 14:44:07 Processing triggers for systemd (229-4ubuntu21.16) ... build 29-Mar-2019 14:44:07 Installing package into '/usr/local/lib/R/site-library' build 29-Mar-2019 14:44:07 (as 'lib' is unspecified) build 29-Mar-2019 14:44:08 trying URL 'http://cran.rstudio.com/src/contrib/jsonlite_1.6.tar.gz' build 29-Mar-2019 14:44:08 Content type 'application/x-gzip' length 1052728 bytes (1.0 MB) build 29-Mar-2019 14:44:08 ================================================== build 29-Mar-2019 14:44:08 downloaded 1.0 MB build 29-Mar-2019 14:44:08 build 29-Mar-2019 14:44:08 * installing *source* package 'jsonlite' ... build 29-Mar-2019 14:44:08 ** package 'jsonlite' successfully unpacked and MD5 sums checked build 29-Mar-2019 14:44:08 ** libs build 29-Mar-2019 14:44:08 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base64.c -o base64.o build 29-Mar-2019 14:44:09 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_array.c -o collapse_array.o build 29-Mar-2019 14:44:09 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_object.c -o collapse_object.o build 29-Mar-2019 14:44:09 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_pretty.c -o collapse_pretty.o build 29-Mar-2019 14:44:09 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c escape_chars.c -o escape_chars.o build 29-Mar-2019 14:44:09 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c integer64_to_na.c -o integer64_to_na.o build 29-Mar-2019 14:44:09 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_datelist.c -o is_datelist.o build 29-Mar-2019 14:44:09 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_recordlist.c -o is_recordlist.o build 29-Mar-2019 14:44:09 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_scalarlist.c -o is_scalarlist.o build 29-Mar-2019 14:44:09 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c modp_numtoa.c -o modp_numtoa.o build 29-Mar-2019 14:44:09 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c null_to_na.c -o null_to_na.o build 29-Mar-2019 14:44:09 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c num_to_char.c -o num_to_char.o build 29-Mar-2019 14:44:09 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c parse.c -o parse.o build 29-Mar-2019 14:44:09 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c prettify.c -o prettify.o build 29-Mar-2019 14:44:09 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c push_parser.c -o push_parser.o build 29-Mar-2019 14:44:10 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c r-base64.c -o r-base64.o build 29-Mar-2019 14:44:10 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c register.c -o register.o build 29-Mar-2019 14:44:10 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c row_collapse.c -o row_collapse.o build 29-Mar-2019 14:44:10 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transpose_list.c -o transpose_list.o build 29-Mar-2019 14:44:10 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c validate.c -o validate.o build 29-Mar-2019 14:44:10 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl.c -o yajl/yajl.o build 29-Mar-2019 14:44:10 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o build 29-Mar-2019 14:44:10 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_buf.c -o yajl/yajl_buf.o build 29-Mar-2019 14:44:10 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_encode.c -o yajl/yajl_encode.o build 29-Mar-2019 14:44:10 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_gen.c -o yajl/yajl_gen.o build 29-Mar-2019 14:44:10 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_lex.c -o yajl/yajl_lex.o build 29-Mar-2019 14:44:11 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_parser.c -o yajl/yajl_parser.o build 29-Mar-2019 14:44:11 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_tree.c -o yajl/yajl_tree.o build 29-Mar-2019 14:44:11 ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o build 29-Mar-2019 14:44:11 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/usr/lib/R/lib -lR build 29-Mar-2019 14:44:11 installing to /usr/local/lib/R/site-library/jsonlite/libs build 29-Mar-2019 14:44:11 ** R build 29-Mar-2019 14:44:11 ** inst build 29-Mar-2019 14:44:11 ** preparing package for lazy loading build 29-Mar-2019 14:44:11 ** help build 29-Mar-2019 14:44:11 *** installing help indices build 29-Mar-2019 14:44:11 ** building package indices build 29-Mar-2019 14:44:11 ** installing vignettes build 29-Mar-2019 14:44:11 ** testing if installed package can be loaded build 29-Mar-2019 14:44:11 * DONE (jsonlite) build 29-Mar-2019 14:44:11  build 29-Mar-2019 14:44:11 The downloaded source packages are in build 29-Mar-2019 14:44:11 '/tmp/Rtmp9pO6uE/downloaded_packages' build 29-Mar-2019 14:44:11 [1] "/usr/local/lib/R/site-library/jsonlite" build 29-Mar-2019 14:44:19 Removing intermediate container 524929b1a4ca build 29-Mar-2019 14:44:19 ---> a69a9bff2713 build 29-Mar-2019 14:44:19 Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/ build 29-Mar-2019 14:44:20 ---> 10fb7164ce5e build 29-Mar-2019 14:44:20 Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 29-Mar-2019 14:44:20 ---> Running in efc98eedcb3d build 29-Mar-2019 14:44:20 Removing intermediate container efc98eedcb3d build 29-Mar-2019 14:44:20 ---> a28aea32044e build 29-Mar-2019 14:44:20 Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 29-Mar-2019 14:44:21 ---> Running in 961f02e51522 build 29-Mar-2019 14:44:21 Removing intermediate container 961f02e51522 build 29-Mar-2019 14:44:21 ---> 3211463b2d19 build 29-Mar-2019 14:44:21 Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ build 29-Mar-2019 14:44:21 ---> Running in 1619eda82e06 build 29-Mar-2019 14:44:22 Removing intermediate container 1619eda82e06 build 29-Mar-2019 14:44:22 ---> 1ba734477c41 build 29-Mar-2019 14:44:22 Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi build 29-Mar-2019 14:44:22 ---> Running in 2d478b2e6b19 build 29-Mar-2019 14:44:22 Removing intermediate container 2d478b2e6b19 build 29-Mar-2019 14:44:22 ---> 58a050f451e1 build 29-Mar-2019 14:44:22 Step 9/10 : ONBUILD ADD . /home/clowder/ build 29-Mar-2019 14:44:22 ---> Running in dc196e4c2227 build 29-Mar-2019 14:44:23 Removing intermediate container dc196e4c2227 build 29-Mar-2019 14:44:23 ---> 81751504080a build 29-Mar-2019 14:44:23 Step 10/10 : CMD python r_extractor.py build 29-Mar-2019 14:44:23 ---> Running in 9ef94d87d352 build 29-Mar-2019 14:44:23 Removing intermediate container 9ef94d87d352 build 29-Mar-2019 14:44:23 ---> 9dbe18e081d9 build 29-Mar-2019 14:44:23 Successfully built 9dbe18e081d9 build 29-Mar-2019 14:44:23 Successfully tagged clowder/extractors-simple-r-extractor:onbuild build 29-Mar-2019 14:44:23 Sending build context to Docker daemon 268.8kB build 29-Mar-2019 14:44:23 build 29-Mar-2019 14:44:23 Step 1/9 : FROM ubuntu:16.04 build 29-Mar-2019 14:44:23 ---> 9361ce633ff1 build 29-Mar-2019 14:44:23 Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" build 29-Mar-2019 14:44:23 ---> Using cache build 29-Mar-2019 14:44:23 ---> b8711d38a99c build 29-Mar-2019 14:44:23 Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* build 29-Mar-2019 14:44:23 ---> Using cache build 29-Mar-2019 14:44:23 ---> 405c1777f1c8 build 29-Mar-2019 14:44:23 Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder build 29-Mar-2019 14:44:23 ---> Using cache build 29-Mar-2019 14:44:23 ---> aa8ae74c236c build 29-Mar-2019 14:44:23 Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/ build 29-Mar-2019 14:44:23 ---> Using cache build 29-Mar-2019 14:44:23 ---> 0b22b2408694 build 29-Mar-2019 14:44:23 Step 6/9 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder build 29-Mar-2019 14:44:23 ---> Using cache build 29-Mar-2019 14:44:23 ---> 15dabcfede17 build 29-Mar-2019 14:44:23 Step 7/9 : WORKDIR /home/clowder build 29-Mar-2019 14:44:23 ---> Using cache build 29-Mar-2019 14:44:23 ---> 68118e6751a5 build 29-Mar-2019 14:44:23 Step 8/9 : COPY notifications.json /home/clowder build 29-Mar-2019 14:44:23 ---> Using cache build 29-Mar-2019 14:44:23 ---> 58b92a965abe build 29-Mar-2019 14:44:23 Step 9/9 : CMD python "./${MAIN_SCRIPT}" build 29-Mar-2019 14:44:23 ---> Using cache build 29-Mar-2019 14:44:23 ---> b2a4d1ef13d4 build 29-Mar-2019 14:44:23 [Warning] One or more build-args [PYTHON_VERSION] were not consumed build 29-Mar-2019 14:44:23 Successfully built b2a4d1ef13d4 build 29-Mar-2019 14:44:23 Successfully tagged clowder/pyclowder-python3:latest build 29-Mar-2019 14:44:23 Sending build context to Docker daemon 267.3kB build 29-Mar-2019 14:44:23 build 29-Mar-2019 14:44:24 Step 1/6 : FROM clowder/pyclowder build 29-Mar-2019 14:44:24 ---> b2a4d1ef13d4 build 29-Mar-2019 14:44:24 Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 29-Mar-2019 14:44:24 ---> Using cache build 29-Mar-2019 14:44:24 ---> c76c87cf5997 build 29-Mar-2019 14:44:24 Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 29-Mar-2019 14:44:24 ---> Using cache build 29-Mar-2019 14:44:24 ---> a4a17901bfc2 build 29-Mar-2019 14:44:24 Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 29-Mar-2019 14:44:24 ---> Using cache build 29-Mar-2019 14:44:24 ---> e25ce04c8c68 build 29-Mar-2019 14:44:24 Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 29-Mar-2019 14:44:24 ---> Using cache build 29-Mar-2019 14:44:24 ---> fc36fa56bdc4 build 29-Mar-2019 14:44:24 Step 6/6 : ONBUILD ADD . /home/clowder/ build 29-Mar-2019 14:44:24 ---> Using cache build 29-Mar-2019 14:44:24 ---> 2d3ef9580b49 build 29-Mar-2019 14:44:24 [Warning] One or more build-args [PYTHON_VERSION] were not consumed build 29-Mar-2019 14:44:24 Successfully built 2d3ef9580b49 build 29-Mar-2019 14:44:24 Successfully tagged clowder/pyclowder-python3:onbuild build 29-Mar-2019 14:44:24 Sending build context to Docker daemon 6.656kB build 29-Mar-2019 14:44:24 build 29-Mar-2019 14:44:24 Step 1/9 : FROM clowder/pyclowder:onbuild build 29-Mar-2019 14:44:24 # Executing 5 build triggers build 29-Mar-2019 14:44:24 ---> Using cache build 29-Mar-2019 14:44:24 ---> Using cache build 29-Mar-2019 14:44:24 ---> Using cache build 29-Mar-2019 14:44:24 ---> Using cache build 29-Mar-2019 14:44:24 ---> Using cache build 29-Mar-2019 14:44:24 ---> ba4811f577f9 build 29-Mar-2019 14:44:24 Step 2/9 : ENV EXTRACTION_FUNC="" build 29-Mar-2019 14:44:24 ---> Using cache build 29-Mar-2019 14:44:24 ---> 2132744c82b5 build 29-Mar-2019 14:44:24 Step 3/9 : ENV EXTRACTION_MODULE="" build 29-Mar-2019 14:44:24 ---> Using cache build 29-Mar-2019 14:44:24 ---> 29b2bfe64aef build 29-Mar-2019 14:44:24 Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 29-Mar-2019 14:44:24 ---> Using cache build 29-Mar-2019 14:44:24 ---> 8b098b4a7cbf build 29-Mar-2019 14:44:24 Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 29-Mar-2019 14:44:24 ---> Using cache build 29-Mar-2019 14:44:24 ---> ecbbb840dc36 build 29-Mar-2019 14:44:24 Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 29-Mar-2019 14:44:24 ---> Using cache build 29-Mar-2019 14:44:24 ---> 33b8d0ac8c31 build 29-Mar-2019 14:44:24 Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 29-Mar-2019 14:44:24 ---> Using cache build 29-Mar-2019 14:44:24 ---> e873005fe417 build 29-Mar-2019 14:44:24 Step 8/9 : ONBUILD ADD . /home/clowder/ build 29-Mar-2019 14:44:24 ---> Using cache build 29-Mar-2019 14:44:24 ---> cafbf780df09 build 29-Mar-2019 14:44:24 Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" build 29-Mar-2019 14:44:24 ---> Using cache build 29-Mar-2019 14:44:24 ---> d7b14699c615 build 29-Mar-2019 14:44:24 [Warning] One or more build-args [PYTHON_VERSION] were not consumed build 29-Mar-2019 14:44:24 Successfully built d7b14699c615 build 29-Mar-2019 14:44:24 Successfully tagged clowder/extractors-simple-extractor-python3:onbuild build 29-Mar-2019 14:44:24 Sending build context to Docker daemon 13.31kB build 29-Mar-2019 14:44:24 build 29-Mar-2019 14:44:24 Step 1/10 : FROM clowder/pyclowder:latest build 29-Mar-2019 14:44:24 ---> b2a4d1ef13d4 build 29-Mar-2019 14:44:24 Step 2/10 : ENV R_SCRIPT="" R_FUNCTION="" build 29-Mar-2019 14:44:24 ---> Using cache build 29-Mar-2019 14:44:24 ---> 34efcd9d2263 build 29-Mar-2019 14:44:24 Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" build 29-Mar-2019 14:44:24 ---> Using cache build 29-Mar-2019 14:44:24 ---> a69a9bff2713 build 29-Mar-2019 14:44:24 Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/ build 29-Mar-2019 14:44:24 ---> Using cache build 29-Mar-2019 14:44:24 ---> 10fb7164ce5e build 29-Mar-2019 14:44:24 Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 29-Mar-2019 14:44:24 ---> Using cache build 29-Mar-2019 14:44:24 ---> a28aea32044e build 29-Mar-2019 14:44:24 Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 29-Mar-2019 14:44:24 ---> Using cache build 29-Mar-2019 14:44:24 ---> 3211463b2d19 build 29-Mar-2019 14:44:24 Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ build 29-Mar-2019 14:44:24 ---> Using cache build 29-Mar-2019 14:44:24 ---> 1ba734477c41 build 29-Mar-2019 14:44:24 Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi build 29-Mar-2019 14:44:24 ---> Using cache build 29-Mar-2019 14:44:24 ---> 58a050f451e1 build 29-Mar-2019 14:44:24 Step 9/10 : ONBUILD ADD . /home/clowder/ build 29-Mar-2019 14:44:24 ---> Using cache build 29-Mar-2019 14:44:24 ---> 81751504080a build 29-Mar-2019 14:44:24 Step 10/10 : CMD python r_extractor.py build 29-Mar-2019 14:44:24 ---> Using cache build 29-Mar-2019 14:44:24 ---> 9dbe18e081d9 build 29-Mar-2019 14:44:24 [Warning] One or more build-args [PYTHON_VERSION] were not consumed build 29-Mar-2019 14:44:24 Successfully built 9dbe18e081d9 build 29-Mar-2019 14:44:24 Successfully tagged clowder/extractors-simple-r-extractor-python3:onbuild build 29-Mar-2019 14:44:24 Sending build context to Docker daemon 9.216kB build 29-Mar-2019 14:44:24 build 29-Mar-2019 14:44:24 Step 1/2 : FROM clowder/pyclowder:onbuild build 29-Mar-2019 14:44:24 # Executing 5 build triggers build 29-Mar-2019 14:44:25 ---> Running in 491dd62b2c8e build 29-Mar-2019 14:44:27 Removing intermediate container 491dd62b2c8e build 29-Mar-2019 14:44:27 ---> Running in 73f1c4de1ca9 build 29-Mar-2019 14:44:29 Removing intermediate container 73f1c4de1ca9 build 29-Mar-2019 14:44:29 ---> 004cb9700cd9 build 29-Mar-2019 14:44:29 Step 2/2 : ENV MAIN_SCRIPT="wordcount.py" build 29-Mar-2019 14:44:29 ---> Running in 7fadb7569558 build 29-Mar-2019 14:44:30 Removing intermediate container 7fadb7569558 build 29-Mar-2019 14:44:30 ---> fb0f9a33071c build 29-Mar-2019 14:44:30 Successfully built fb0f9a33071c build 29-Mar-2019 14:44:30 Successfully tagged clowder/extractors-wordcount:latest build 29-Mar-2019 14:44:30 Sending build context to Docker daemon 5.12kB build 29-Mar-2019 14:44:30 build 29-Mar-2019 14:44:30 Step 1/3 : FROM clowder/extractors-simple-extractor:onbuild build 29-Mar-2019 14:44:30 # Executing 5 build triggers build 29-Mar-2019 14:44:31 ---> Running in b94a86f4e98a build 29-Mar-2019 14:44:32 Removing intermediate container b94a86f4e98a build 29-Mar-2019 14:44:33 ---> Running in 268d55273adc build 29-Mar-2019 14:44:34 Removing intermediate container 268d55273adc build 29-Mar-2019 14:44:35 ---> 42add04cf574 build 29-Mar-2019 14:44:35 Step 2/3 : ENV EXTRACTION_FUNC="wordcount" build 29-Mar-2019 14:44:35 ---> Running in c7792a134d1d build 29-Mar-2019 14:44:35 Removing intermediate container c7792a134d1d build 29-Mar-2019 14:44:35 ---> ad2c5b314348 build 29-Mar-2019 14:44:35 Step 3/3 : ENV EXTRACTION_MODULE="wordcount" build 29-Mar-2019 14:44:36 ---> Running in b7e0e3c98a21 build 29-Mar-2019 14:44:36 Removing intermediate container b7e0e3c98a21 build 29-Mar-2019 14:44:36 ---> 65ef9b92cb24 build 29-Mar-2019 14:44:36 Successfully built 65ef9b92cb24 build 29-Mar-2019 14:44:36 Successfully tagged clowder/extractors-wordcount-simple-extractor:latest build 29-Mar-2019 14:44:36 Sending build context to Docker daemon 5.12kB build 29-Mar-2019 14:44:36 build 29-Mar-2019 14:44:36 Step 1/2 : FROM clowder/extractors-simple-r-extractor:onbuild build 29-Mar-2019 14:44:36 # Executing 5 build triggers build 29-Mar-2019 14:44:37 ---> Running in 0ff411e9b9d6 build 29-Mar-2019 14:44:38 Removing intermediate container 0ff411e9b9d6 build 29-Mar-2019 14:44:39 ---> Running in 86a3b67223e2 build 29-Mar-2019 14:44:40 Removing intermediate container 86a3b67223e2 build 29-Mar-2019 14:44:41 ---> 643ec6beb456 build 29-Mar-2019 14:44:41 Step 2/2 : ENV R_SCRIPT="wordcount.R" R_FUNCTION="process_file" build 29-Mar-2019 14:44:41 ---> Running in ff9be4bafe7a build 29-Mar-2019 14:44:41 Removing intermediate container ff9be4bafe7a build 29-Mar-2019 14:44:41 ---> bc1c79e1f761 build 29-Mar-2019 14:44:41 Successfully built bc1c79e1f761 build 29-Mar-2019 14:44:41 Successfully tagged clowder/extractors-wordcount-simple-r-extractor:latest build 29-Mar-2019 14:44:41 Sending build context to Docker daemon 8.192kB build 29-Mar-2019 14:44:41 build 29-Mar-2019 14:44:42 Step 1/7 : FROM python:3.5 build 29-Mar-2019 14:44:42 3.5: Pulling from library/python build 29-Mar-2019 14:44:42 e79bb959ec00: Pulling fs layer build 29-Mar-2019 14:44:42 d4b7902036fe: Pulling fs layer build 29-Mar-2019 14:44:42 1b2a72d4e030: Pulling fs layer build 29-Mar-2019 14:44:42 d54db43011fd: Pulling fs layer build 29-Mar-2019 14:44:42 69d473365bb3: Pulling fs layer build 29-Mar-2019 14:44:42 35b4aebab92b: Pulling fs layer build 29-Mar-2019 14:44:42 83a8b8905f6c: Pulling fs layer build 29-Mar-2019 14:44:42 618457f5476e: Pulling fs layer build 29-Mar-2019 14:44:42 9b4f56490eea: Pulling fs layer build 29-Mar-2019 14:44:42 35b4aebab92b: Waiting build 29-Mar-2019 14:44:42 83a8b8905f6c: Waiting build 29-Mar-2019 14:44:42 618457f5476e: Waiting build 29-Mar-2019 14:44:42 9b4f56490eea: Waiting build 29-Mar-2019 14:44:42 d54db43011fd: Waiting build 29-Mar-2019 14:44:42 69d473365bb3: Waiting build 29-Mar-2019 14:44:42 1b2a72d4e030: Verifying Checksum build 29-Mar-2019 14:44:42 1b2a72d4e030: Download complete build 29-Mar-2019 14:44:43 d4b7902036fe: Verifying Checksum build 29-Mar-2019 14:44:43 d4b7902036fe: Download complete build 29-Mar-2019 14:44:43 e79bb959ec00: Verifying Checksum build 29-Mar-2019 14:44:43 e79bb959ec00: Download complete build 29-Mar-2019 14:44:44 35b4aebab92b: Verifying Checksum build 29-Mar-2019 14:44:44 35b4aebab92b: Download complete build 29-Mar-2019 14:44:44 d54db43011fd: Verifying Checksum build 29-Mar-2019 14:44:44 d54db43011fd: Download complete build 29-Mar-2019 14:44:44 618457f5476e: Verifying Checksum build 29-Mar-2019 14:44:44 618457f5476e: Download complete build 29-Mar-2019 14:44:44 9b4f56490eea: Verifying Checksum build 29-Mar-2019 14:44:44 9b4f56490eea: Download complete build 29-Mar-2019 14:44:44 83a8b8905f6c: Verifying Checksum build 29-Mar-2019 14:44:44 83a8b8905f6c: Download complete build 29-Mar-2019 14:44:46 e79bb959ec00: Pull complete build 29-Mar-2019 14:44:47 d4b7902036fe: Pull complete build 29-Mar-2019 14:44:48 1b2a72d4e030: Pull complete build 29-Mar-2019 14:44:49 69d473365bb3: Verifying Checksum build 29-Mar-2019 14:44:49 69d473365bb3: Download complete build 29-Mar-2019 14:44:53 d54db43011fd: Pull complete build 29-Mar-2019 14:45:01 69d473365bb3: Pull complete build 29-Mar-2019 14:45:02 35b4aebab92b: Pull complete build 29-Mar-2019 14:45:06 83a8b8905f6c: Pull complete build 29-Mar-2019 14:45:07 618457f5476e: Pull complete build 29-Mar-2019 14:45:08 9b4f56490eea: Pull complete build 29-Mar-2019 14:45:08 Digest: sha256:92d649f4a662abbfb223f9327b30b28b2548e18b577e0143775946e9fbde168a build 29-Mar-2019 14:45:08 Status: Downloaded newer image for python:3.5 build 29-Mar-2019 14:45:08 ---> 2bf898387bbd build 29-Mar-2019 14:45:08 Step 2/7 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq/%2F" build 29-Mar-2019 14:45:08 ---> Running in 42858e23898f build 29-Mar-2019 14:45:08 Removing intermediate container 42858e23898f build 29-Mar-2019 14:45:08 ---> 19abc1809f07 build 29-Mar-2019 14:45:08 Step 3/7 : EXPOSE 9999 build 29-Mar-2019 14:45:09 ---> Running in ef9609a4d73e build 29-Mar-2019 14:45:09 Removing intermediate container ef9609a4d73e build 29-Mar-2019 14:45:09 ---> 29794a001c42 build 29-Mar-2019 14:45:09 Step 4/7 : RUN pip install pika==0.11.2 requests==2.18.4 build 29-Mar-2019 14:45:09 ---> Running in 3f9f14e3f094 build 29-Mar-2019 14:45:11 Collecting pika==0.11.2 build 29-Mar-2019 14:45:11 Downloading https://files.pythonhosted.org/packages/76/b4/0ada6918ac79ce4d8d45d0ba436ee21a1ef685047fb1dde4d2de0178b327/pika-0.11.2-py2.py3-none-any.whl (107kB) build 29-Mar-2019 14:45:11 Collecting requests==2.18.4 build 29-Mar-2019 14:45:11 Downloading https://files.pythonhosted.org/packages/49/df/50aa1999ab9bde74656c2919d9c0c085fd2b3775fd3eca826012bef76d8c/requests-2.18.4-py2.py3-none-any.whl (88kB) build 29-Mar-2019 14:45:11 Collecting certifi>=2017.4.17 (from requests==2.18.4) build 29-Mar-2019 14:45:11 Downloading https://files.pythonhosted.org/packages/60/75/f692a584e85b7eaba0e03827b3d51f45f571c2e793dd731e598828d380aa/certifi-2019.3.9-py2.py3-none-any.whl (158kB) build 29-Mar-2019 14:45:11 Collecting idna<2.7,>=2.5 (from requests==2.18.4) build 29-Mar-2019 14:45:11 Downloading https://files.pythonhosted.org/packages/27/cc/6dd9a3869f15c2edfab863b992838277279ce92663d334df9ecf5106f5c6/idna-2.6-py2.py3-none-any.whl (56kB) build 29-Mar-2019 14:45:11 Collecting chardet<3.1.0,>=3.0.2 (from requests==2.18.4) build 29-Mar-2019 14:45:11 Downloading https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl (133kB) build 29-Mar-2019 14:45:11 Collecting urllib3<1.23,>=1.21.1 (from requests==2.18.4) build 29-Mar-2019 14:45:11 Downloading https://files.pythonhosted.org/packages/63/cb/6965947c13a94236f6d4b8223e21beb4d576dc72e8130bd7880f600839b8/urllib3-1.22-py2.py3-none-any.whl (132kB) build 29-Mar-2019 14:45:11 Installing collected packages: pika, certifi, idna, chardet, urllib3, requests build 29-Mar-2019 14:45:12 Successfully installed certifi-2019.3.9 chardet-3.0.4 idna-2.6 pika-0.11.2 requests-2.18.4 urllib3-1.22 build 29-Mar-2019 14:45:14 Removing intermediate container 3f9f14e3f094 build 29-Mar-2019 14:45:14 ---> 7b3fc5e35397 build 29-Mar-2019 14:45:14 Step 5/7 : WORKDIR /src build 29-Mar-2019 14:45:14 ---> Running in 64ef1d26a65c build 29-Mar-2019 14:45:14 Removing intermediate container 64ef1d26a65c build 29-Mar-2019 14:45:14 ---> 5034004bc395 build 29-Mar-2019 14:45:14 Step 6/7 : COPY monitor.py /src/ build 29-Mar-2019 14:45:14 ---> 85c6b7934168 build 29-Mar-2019 14:45:14 Step 7/7 : CMD python monitor.py build 29-Mar-2019 14:45:15 ---> Running in 0397dd5cbd6d build 29-Mar-2019 14:45:15 Removing intermediate container 0397dd5cbd6d build 29-Mar-2019 14:45:15 ---> 91176fafc001 build 29-Mar-2019 14:45:15 Successfully built 91176fafc001 build 29-Mar-2019 14:45:15 Successfully tagged clowder/extractors-monitor:latest simple 29-Mar-2019 14:45:15 Finished task 'docker build' with result: Success simple 29-Mar-2019 14:45:15 Starting task 'docker push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 29-Mar-2019 14:45:15 Beginning to execute external process for build 'Clowder - pyclowder2 - develop - Default Job #23 (CATS-PYC265-JOB1-23)'\n ... running command line: \n/bin/sh release.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=develop\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_planRepository_1_branchDisplayName=develop\nbamboo_repository_revision_number=87a6605ea74a9ed9ddf685d4a0cd25cf27390699\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC265-JOB1-23\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_repository_157745161_name=pyclowder2\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1\nbamboo_planRepository_1_name=pyclowder2\nbamboo_buildKey=CATS-PYC265-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=develop\nbamboo_repository_157745161_branch_name=develop\nbamboo_planRepository_name=pyclowder2\nbamboo_buildNumber=23\nbamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC265-JOB1-23\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_agentId=140673027\nbamboo_planName=Clowder - pyclowder2 - develop\nbamboo_shortPlanKey=PYC265\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_shortJobKey=JOB1\nbamboo_planRepository_revision=87a6605ea74a9ed9ddf685d4a0cd25cf27390699\nbamboo_buildTimeStamp=2019-03-29T14:22:08.927-05:00\nbamboo_repository_previous_revision_number=764d9e0e516bfc4aba00f9e03b402858665c62af\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_repository_157745161_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_3=/home/bamboo/bamboo-agent-home/temp/CATS-PYC265-JOB1-23-ScriptBuildTask-4595652015176672640.sh\nbamboo_planRepository_previousRevision=764d9e0e516bfc4aba00f9e03b402858665c62af\nbamboo_repository_157745161_git_username=\nbamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_2=/bin/sh docker.sh\nbamboo_repository_git_branch=develop\nbamboo_buildResultKey=CATS-PYC265-JOB1-23\nbamboo_repository_branch_name=develop\nbamboo_buildPlanName=Clowder - pyclowder2 - develop - Default Job\nbamboo_planRepository_1_revision=87a6605ea74a9ed9ddf685d4a0cd25cf27390699\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=pyclowder2\nbamboo_buildFailed=false\nbamboo_repository_157745161_git_branch=develop\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_branch=develop\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_repository_157745161_previous_revision_number=764d9e0e516bfc4aba00f9e03b402858665c62af\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=764d9e0e516bfc4aba00f9e03b402858665c62af\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_planRepository_branchDisplayName=develop\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=develop\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-157548561\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_repository_157745161_revision_number=87a6605ea74a9ed9ddf685d4a0cd25cf27390699\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1\nbamboo_planKey=CATS-PYC265\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_1_branchName=develop\n build 29-Mar-2019 14:45:15 Sending build context to Docker daemon 268.8kB build 29-Mar-2019 14:45:15 build 29-Mar-2019 14:45:15 Step 1/9 : FROM ubuntu:16.04 build 29-Mar-2019 14:45:15 ---> 9361ce633ff1 build 29-Mar-2019 14:45:15 Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" build 29-Mar-2019 14:45:15 ---> Using cache build 29-Mar-2019 14:45:15 ---> b8711d38a99c build 29-Mar-2019 14:45:15 Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* build 29-Mar-2019 14:45:15 ---> Using cache build 29-Mar-2019 14:45:15 ---> 405c1777f1c8 build 29-Mar-2019 14:45:15 Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder build 29-Mar-2019 14:45:15 ---> Using cache build 29-Mar-2019 14:45:15 ---> aa8ae74c236c build 29-Mar-2019 14:45:15 Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/ build 29-Mar-2019 14:45:15 ---> Using cache build 29-Mar-2019 14:45:15 ---> 0b22b2408694 build 29-Mar-2019 14:45:15 Step 6/9 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder build 29-Mar-2019 14:45:15 ---> Using cache build 29-Mar-2019 14:45:15 ---> 15dabcfede17 build 29-Mar-2019 14:45:15 Step 7/9 : WORKDIR /home/clowder build 29-Mar-2019 14:45:15 ---> Using cache build 29-Mar-2019 14:45:15 ---> 68118e6751a5 build 29-Mar-2019 14:45:15 Step 8/9 : COPY notifications.json /home/clowder build 29-Mar-2019 14:45:15 ---> Using cache build 29-Mar-2019 14:45:15 ---> 58b92a965abe build 29-Mar-2019 14:45:15 Step 9/9 : CMD python "./${MAIN_SCRIPT}" build 29-Mar-2019 14:45:15 ---> Using cache build 29-Mar-2019 14:45:15 ---> b2a4d1ef13d4 build 29-Mar-2019 14:45:15 Successfully built b2a4d1ef13d4 build 29-Mar-2019 14:45:15 Successfully tagged clowder/pyclowder:latest build 29-Mar-2019 14:45:15 Sending build context to Docker daemon 267.3kB build 29-Mar-2019 14:45:15 build 29-Mar-2019 14:45:15 Step 1/6 : FROM clowder/pyclowder build 29-Mar-2019 14:45:15 ---> b2a4d1ef13d4 build 29-Mar-2019 14:45:15 Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 29-Mar-2019 14:45:15 ---> Using cache build 29-Mar-2019 14:45:15 ---> c76c87cf5997 build 29-Mar-2019 14:45:15 Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 29-Mar-2019 14:45:15 ---> Using cache build 29-Mar-2019 14:45:15 ---> a4a17901bfc2 build 29-Mar-2019 14:45:15 Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 29-Mar-2019 14:45:15 ---> Using cache build 29-Mar-2019 14:45:15 ---> e25ce04c8c68 build 29-Mar-2019 14:45:15 Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 29-Mar-2019 14:45:15 ---> Using cache build 29-Mar-2019 14:45:15 ---> fc36fa56bdc4 build 29-Mar-2019 14:45:15 Step 6/6 : ONBUILD ADD . /home/clowder/ build 29-Mar-2019 14:45:15 ---> Using cache build 29-Mar-2019 14:45:15 ---> 2d3ef9580b49 build 29-Mar-2019 14:45:15 Successfully built 2d3ef9580b49 build 29-Mar-2019 14:45:15 Successfully tagged clowder/pyclowder:onbuild build 29-Mar-2019 14:45:15 Sending build context to Docker daemon 12.8kB build 29-Mar-2019 14:45:15 build 29-Mar-2019 14:45:16 Step 1/5 : FROM clowder/pyclowder:onbuild build 29-Mar-2019 14:45:16 # Executing 5 build triggers build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> c4840cbc0083 build 29-Mar-2019 14:45:16 Step 2/5 : ENV MAIN_SCRIPT="binary_extractor.py" RABBITMQ_QUEUE="" IMAGE_BINARY="" IMAGE_TYPE="" IMAGE_THUMBNAIL_COMMAND="" IMAGE_PREVIEW_COMMAND="" PREVIEW_BINARY="" PREVIEW_TYPE="" PREVIEW_COMMAND="" build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> 4c4ec99ec1df build 29-Mar-2019 14:45:16 Step 3/5 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> 7e4ed514e7ba build 29-Mar-2019 14:45:16 Step 4/5 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> 33369c9d67aa build 29-Mar-2019 14:45:16 Step 5/5 : ONBUILD COPY extractor_info.json /home/clowder/ build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> bf326e729aba build 29-Mar-2019 14:45:16 Successfully built bf326e729aba build 29-Mar-2019 14:45:16 Successfully tagged clowder/extractors-binary-preview:onbuild build 29-Mar-2019 14:45:16 Sending build context to Docker daemon 6.656kB build 29-Mar-2019 14:45:16 build 29-Mar-2019 14:45:16 Step 1/9 : FROM clowder/pyclowder:onbuild build 29-Mar-2019 14:45:16 # Executing 5 build triggers build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> ba4811f577f9 build 29-Mar-2019 14:45:16 Step 2/9 : ENV EXTRACTION_FUNC="" build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> 2132744c82b5 build 29-Mar-2019 14:45:16 Step 3/9 : ENV EXTRACTION_MODULE="" build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> 29b2bfe64aef build 29-Mar-2019 14:45:16 Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> 8b098b4a7cbf build 29-Mar-2019 14:45:16 Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> ecbbb840dc36 build 29-Mar-2019 14:45:16 Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> 33b8d0ac8c31 build 29-Mar-2019 14:45:16 Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> e873005fe417 build 29-Mar-2019 14:45:16 Step 8/9 : ONBUILD ADD . /home/clowder/ build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> cafbf780df09 build 29-Mar-2019 14:45:16 Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> d7b14699c615 build 29-Mar-2019 14:45:16 Successfully built d7b14699c615 build 29-Mar-2019 14:45:16 Successfully tagged clowder/extractors-simple-extractor:onbuild build 29-Mar-2019 14:45:16 Sending build context to Docker daemon 13.31kB build 29-Mar-2019 14:45:16 build 29-Mar-2019 14:45:16 Step 1/10 : FROM clowder/pyclowder:latest build 29-Mar-2019 14:45:16 ---> b2a4d1ef13d4 build 29-Mar-2019 14:45:16 Step 2/10 : ENV R_SCRIPT="" R_FUNCTION="" build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> 34efcd9d2263 build 29-Mar-2019 14:45:16 Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> a69a9bff2713 build 29-Mar-2019 14:45:16 Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/ build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> 10fb7164ce5e build 29-Mar-2019 14:45:16 Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> a28aea32044e build 29-Mar-2019 14:45:16 Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> 3211463b2d19 build 29-Mar-2019 14:45:16 Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> 1ba734477c41 build 29-Mar-2019 14:45:16 Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> 58a050f451e1 build 29-Mar-2019 14:45:16 Step 9/10 : ONBUILD ADD . /home/clowder/ build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> 81751504080a build 29-Mar-2019 14:45:16 Step 10/10 : CMD python r_extractor.py build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> 9dbe18e081d9 build 29-Mar-2019 14:45:16 Successfully built 9dbe18e081d9 build 29-Mar-2019 14:45:16 Successfully tagged clowder/extractors-simple-r-extractor:onbuild build 29-Mar-2019 14:45:16 Sending build context to Docker daemon 268.8kB build 29-Mar-2019 14:45:16 build 29-Mar-2019 14:45:16 Step 1/9 : FROM ubuntu:16.04 build 29-Mar-2019 14:45:16 ---> 9361ce633ff1 build 29-Mar-2019 14:45:16 Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> b8711d38a99c build 29-Mar-2019 14:45:16 Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> 405c1777f1c8 build 29-Mar-2019 14:45:16 Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> aa8ae74c236c build 29-Mar-2019 14:45:16 Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/ build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> 0b22b2408694 build 29-Mar-2019 14:45:16 Step 6/9 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> 15dabcfede17 build 29-Mar-2019 14:45:16 Step 7/9 : WORKDIR /home/clowder build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> 68118e6751a5 build 29-Mar-2019 14:45:16 Step 8/9 : COPY notifications.json /home/clowder build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> 58b92a965abe build 29-Mar-2019 14:45:16 Step 9/9 : CMD python "./${MAIN_SCRIPT}" build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> b2a4d1ef13d4 build 29-Mar-2019 14:45:16 [Warning] One or more build-args [PYTHON_VERSION] were not consumed build 29-Mar-2019 14:45:16 Successfully built b2a4d1ef13d4 build 29-Mar-2019 14:45:16 Successfully tagged clowder/pyclowder-python3:latest build 29-Mar-2019 14:45:16 Sending build context to Docker daemon 267.3kB build 29-Mar-2019 14:45:16 build 29-Mar-2019 14:45:16 Step 1/6 : FROM clowder/pyclowder build 29-Mar-2019 14:45:16 ---> b2a4d1ef13d4 build 29-Mar-2019 14:45:16 Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> c76c87cf5997 build 29-Mar-2019 14:45:16 Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> a4a17901bfc2 build 29-Mar-2019 14:45:16 Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> e25ce04c8c68 build 29-Mar-2019 14:45:16 Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> fc36fa56bdc4 build 29-Mar-2019 14:45:16 Step 6/6 : ONBUILD ADD . /home/clowder/ build 29-Mar-2019 14:45:16 ---> Using cache build 29-Mar-2019 14:45:16 ---> 2d3ef9580b49 build 29-Mar-2019 14:45:16 [Warning] One or more build-args [PYTHON_VERSION] were not consumed build 29-Mar-2019 14:45:16 Successfully built 2d3ef9580b49 build 29-Mar-2019 14:45:16 Successfully tagged clowder/pyclowder-python3:onbuild build 29-Mar-2019 14:45:17 Sending build context to Docker daemon 6.656kB build 29-Mar-2019 14:45:17 build 29-Mar-2019 14:45:17 Step 1/9 : FROM clowder/pyclowder:onbuild build 29-Mar-2019 14:45:17 # Executing 5 build triggers build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> ba4811f577f9 build 29-Mar-2019 14:45:17 Step 2/9 : ENV EXTRACTION_FUNC="" build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> 2132744c82b5 build 29-Mar-2019 14:45:17 Step 3/9 : ENV EXTRACTION_MODULE="" build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> 29b2bfe64aef build 29-Mar-2019 14:45:17 Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> 8b098b4a7cbf build 29-Mar-2019 14:45:17 Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> ecbbb840dc36 build 29-Mar-2019 14:45:17 Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> 33b8d0ac8c31 build 29-Mar-2019 14:45:17 Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> e873005fe417 build 29-Mar-2019 14:45:17 Step 8/9 : ONBUILD ADD . /home/clowder/ build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> cafbf780df09 build 29-Mar-2019 14:45:17 Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> d7b14699c615 build 29-Mar-2019 14:45:17 [Warning] One or more build-args [PYTHON_VERSION] were not consumed build 29-Mar-2019 14:45:17 Successfully built d7b14699c615 build 29-Mar-2019 14:45:17 Successfully tagged clowder/extractors-simple-extractor-python3:onbuild build 29-Mar-2019 14:45:17 Sending build context to Docker daemon 13.31kB build 29-Mar-2019 14:45:17 build 29-Mar-2019 14:45:17 Step 1/10 : FROM clowder/pyclowder:latest build 29-Mar-2019 14:45:17 ---> b2a4d1ef13d4 build 29-Mar-2019 14:45:17 Step 2/10 : ENV R_SCRIPT="" R_FUNCTION="" build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> 34efcd9d2263 build 29-Mar-2019 14:45:17 Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> a69a9bff2713 build 29-Mar-2019 14:45:17 Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/ build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> 10fb7164ce5e build 29-Mar-2019 14:45:17 Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> a28aea32044e build 29-Mar-2019 14:45:17 Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> 3211463b2d19 build 29-Mar-2019 14:45:17 Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> 1ba734477c41 build 29-Mar-2019 14:45:17 Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> 58a050f451e1 build 29-Mar-2019 14:45:17 Step 9/10 : ONBUILD ADD . /home/clowder/ build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> 81751504080a build 29-Mar-2019 14:45:17 Step 10/10 : CMD python r_extractor.py build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> 9dbe18e081d9 build 29-Mar-2019 14:45:17 [Warning] One or more build-args [PYTHON_VERSION] were not consumed build 29-Mar-2019 14:45:17 Successfully built 9dbe18e081d9 build 29-Mar-2019 14:45:17 Successfully tagged clowder/extractors-simple-r-extractor-python3:onbuild build 29-Mar-2019 14:45:17 Sending build context to Docker daemon 9.216kB build 29-Mar-2019 14:45:17 build 29-Mar-2019 14:45:17 Step 1/2 : FROM clowder/pyclowder:onbuild build 29-Mar-2019 14:45:17 # Executing 5 build triggers build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> 004cb9700cd9 build 29-Mar-2019 14:45:17 Step 2/2 : ENV MAIN_SCRIPT="wordcount.py" build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> fb0f9a33071c build 29-Mar-2019 14:45:17 Successfully built fb0f9a33071c build 29-Mar-2019 14:45:17 Successfully tagged clowder/extractors-wordcount:latest build 29-Mar-2019 14:45:17 Sending build context to Docker daemon 5.12kB build 29-Mar-2019 14:45:17 build 29-Mar-2019 14:45:17 Step 1/3 : FROM clowder/extractors-simple-extractor:onbuild build 29-Mar-2019 14:45:17 # Executing 5 build triggers build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> 42add04cf574 build 29-Mar-2019 14:45:17 Step 2/3 : ENV EXTRACTION_FUNC="wordcount" build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> ad2c5b314348 build 29-Mar-2019 14:45:17 Step 3/3 : ENV EXTRACTION_MODULE="wordcount" build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> 65ef9b92cb24 build 29-Mar-2019 14:45:17 Successfully built 65ef9b92cb24 build 29-Mar-2019 14:45:17 Successfully tagged clowder/extractors-wordcount-simple-extractor:latest build 29-Mar-2019 14:45:17 Sending build context to Docker daemon 5.12kB build 29-Mar-2019 14:45:17 build 29-Mar-2019 14:45:17 Step 1/2 : FROM clowder/extractors-simple-r-extractor:onbuild build 29-Mar-2019 14:45:17 # Executing 5 build triggers build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> 643ec6beb456 build 29-Mar-2019 14:45:17 Step 2/2 : ENV R_SCRIPT="wordcount.R" R_FUNCTION="process_file" build 29-Mar-2019 14:45:17 ---> Using cache build 29-Mar-2019 14:45:17 ---> bc1c79e1f761 build 29-Mar-2019 14:45:17 Successfully built bc1c79e1f761 build 29-Mar-2019 14:45:17 Successfully tagged clowder/extractors-wordcount-simple-r-extractor:latest build 29-Mar-2019 14:45:17 Sending build context to Docker daemon 8.192kB build 29-Mar-2019 14:45:17 build 29-Mar-2019 14:45:18 Step 1/7 : FROM python:3.5 build 29-Mar-2019 14:45:18 ---> 2bf898387bbd build 29-Mar-2019 14:45:18 Step 2/7 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq/%2F" build 29-Mar-2019 14:45:18 ---> Using cache build 29-Mar-2019 14:45:18 ---> 19abc1809f07 build 29-Mar-2019 14:45:18 Step 3/7 : EXPOSE 9999 build 29-Mar-2019 14:45:18 ---> Using cache build 29-Mar-2019 14:45:18 ---> 29794a001c42 build 29-Mar-2019 14:45:18 Step 4/7 : RUN pip install pika==0.11.2 requests==2.18.4 build 29-Mar-2019 14:45:18 ---> Using cache build 29-Mar-2019 14:45:18 ---> 7b3fc5e35397 build 29-Mar-2019 14:45:18 Step 5/7 : WORKDIR /src build 29-Mar-2019 14:45:18 ---> Using cache build 29-Mar-2019 14:45:18 ---> 5034004bc395 build 29-Mar-2019 14:45:18 Step 6/7 : COPY monitor.py /src/ build 29-Mar-2019 14:45:18 ---> Using cache build 29-Mar-2019 14:45:18 ---> 85c6b7934168 build 29-Mar-2019 14:45:18 Step 7/7 : CMD python monitor.py build 29-Mar-2019 14:45:18 ---> Using cache build 29-Mar-2019 14:45:18 ---> 91176fafc001 build 29-Mar-2019 14:45:18 Successfully built 91176fafc001 build 29-Mar-2019 14:45:18 Successfully tagged clowder/extractors-monitor:latest build 29-Mar-2019 14:45:18 The push refers to repository [docker.io/clowder/pyclowder] build 29-Mar-2019 14:45:18 0ec28b023e12: Preparing build 29-Mar-2019 14:45:18 55ca8e0ae119: Preparing build 29-Mar-2019 14:45:18 345af7800239: Preparing build 29-Mar-2019 14:45:18 905d464180ec: Preparing build 29-Mar-2019 14:45:18 deedd32053cf: Preparing build 29-Mar-2019 14:45:18 40d95a294339: Preparing build 29-Mar-2019 14:45:18 297fd071ca2f: Preparing build 29-Mar-2019 14:45:18 2f0d1e8214b2: Preparing build 29-Mar-2019 14:45:18 7dd604ffa87f: Preparing build 29-Mar-2019 14:45:18 aa54c2bc1229: Preparing build 29-Mar-2019 14:45:18 40d95a294339: Waiting build 29-Mar-2019 14:45:18 297fd071ca2f: Waiting build 29-Mar-2019 14:45:18 2f0d1e8214b2: Waiting build 29-Mar-2019 14:45:18 7dd604ffa87f: Waiting build 29-Mar-2019 14:45:18 aa54c2bc1229: Waiting build 29-Mar-2019 14:45:19 0ec28b023e12: Pushed build 29-Mar-2019 14:45:19 55ca8e0ae119: Pushed build 29-Mar-2019 14:45:19 905d464180ec: Pushed build 29-Mar-2019 14:45:19 deedd32053cf: Pushed build 29-Mar-2019 14:45:20 297fd071ca2f: Layer already exists build 29-Mar-2019 14:45:20 2f0d1e8214b2: Layer already exists build 29-Mar-2019 14:45:20 7dd604ffa87f: Layer already exists build 29-Mar-2019 14:45:20 aa54c2bc1229: Layer already exists build 29-Mar-2019 14:45:21 345af7800239: Pushed build 29-Mar-2019 14:45:25 40d95a294339: Pushed build 29-Mar-2019 14:45:27 develop: digest: sha256:08abf15a19707e0d0136f2eeb97f02d2637584b15a933a84518fc8d428ec8b8e size: 2404 build 29-Mar-2019 14:45:28 The push refers to repository [docker.io/clowder/pyclowder-python3] build 29-Mar-2019 14:45:28 0ec28b023e12: Preparing build 29-Mar-2019 14:45:28 55ca8e0ae119: Preparing build 29-Mar-2019 14:45:28 345af7800239: Preparing build 29-Mar-2019 14:45:28 905d464180ec: Preparing build 29-Mar-2019 14:45:28 deedd32053cf: Preparing build 29-Mar-2019 14:45:28 40d95a294339: Preparing build 29-Mar-2019 14:45:28 297fd071ca2f: Preparing build 29-Mar-2019 14:45:28 2f0d1e8214b2: Preparing build 29-Mar-2019 14:45:28 7dd604ffa87f: Preparing build 29-Mar-2019 14:45:28 aa54c2bc1229: Preparing build 29-Mar-2019 14:45:28 2f0d1e8214b2: Waiting build 29-Mar-2019 14:45:28 7dd604ffa87f: Waiting build 29-Mar-2019 14:45:28 aa54c2bc1229: Waiting build 29-Mar-2019 14:45:28 40d95a294339: Waiting build 29-Mar-2019 14:45:28 297fd071ca2f: Waiting build 29-Mar-2019 14:45:29 55ca8e0ae119: Mounted from clowder/pyclowder build 29-Mar-2019 14:45:29 0ec28b023e12: Mounted from clowder/pyclowder build 29-Mar-2019 14:45:29 345af7800239: Mounted from clowder/pyclowder build 29-Mar-2019 14:45:29 905d464180ec: Mounted from clowder/pyclowder build 29-Mar-2019 14:45:29 deedd32053cf: Mounted from clowder/pyclowder build 29-Mar-2019 14:45:29 297fd071ca2f: Layer already exists build 29-Mar-2019 14:45:29 2f0d1e8214b2: Layer already exists build 29-Mar-2019 14:45:30 7dd604ffa87f: Layer already exists build 29-Mar-2019 14:45:30 aa54c2bc1229: Layer already exists build 29-Mar-2019 14:45:30 40d95a294339: Mounted from clowder/pyclowder build 29-Mar-2019 14:45:31 develop: digest: sha256:08abf15a19707e0d0136f2eeb97f02d2637584b15a933a84518fc8d428ec8b8e size: 2404 build 29-Mar-2019 14:45:33 The push refers to repository [docker.io/clowder/extractors-monitor] build 29-Mar-2019 14:45:33 76970c22f55e: Preparing build 29-Mar-2019 14:45:33 3f86e27d0b0c: Preparing build 29-Mar-2019 14:45:33 f6c3c0c24a14: Preparing build 29-Mar-2019 14:45:33 a4cfd287325b: Preparing build 29-Mar-2019 14:45:33 ab5d9ea2a329: Preparing build 29-Mar-2019 14:45:33 129f218c0368: Preparing build 29-Mar-2019 14:45:33 bd5afbfde642: Preparing build 29-Mar-2019 14:45:33 0fe19df8b8f8: Preparing build 29-Mar-2019 14:45:33 b17cc31e431b: Preparing build 29-Mar-2019 14:45:33 12cb127eee44: Preparing build 29-Mar-2019 14:45:33 604829a174eb: Preparing build 29-Mar-2019 14:45:33 fbb641a8b943: Preparing build 29-Mar-2019 14:45:33 129f218c0368: Waiting build 29-Mar-2019 14:45:33 bd5afbfde642: Waiting build 29-Mar-2019 14:45:33 0fe19df8b8f8: Waiting build 29-Mar-2019 14:45:33 b17cc31e431b: Waiting build 29-Mar-2019 14:45:33 12cb127eee44: Waiting build 29-Mar-2019 14:45:33 604829a174eb: Waiting build 29-Mar-2019 14:45:33 fbb641a8b943: Waiting build 29-Mar-2019 14:45:33 a4cfd287325b: Layer already exists build 29-Mar-2019 14:45:33 ab5d9ea2a329: Layer already exists build 29-Mar-2019 14:45:33 129f218c0368: Layer already exists build 29-Mar-2019 14:45:34 bd5afbfde642: Layer already exists build 29-Mar-2019 14:45:34 0fe19df8b8f8: Layer already exists build 29-Mar-2019 14:45:34 b17cc31e431b: Layer already exists build 29-Mar-2019 14:45:34 76970c22f55e: Pushed build 29-Mar-2019 14:45:34 3f86e27d0b0c: Pushed build 29-Mar-2019 14:45:34 604829a174eb: Layer already exists build 29-Mar-2019 14:45:35 fbb641a8b943: Layer already exists build 29-Mar-2019 14:45:35 f6c3c0c24a14: Pushed build 29-Mar-2019 14:45:35 12cb127eee44: Layer already exists build 29-Mar-2019 14:45:37 develop: digest: sha256:f355ce3667b1c9c7426094b070d3cc1d6fc85977441a0a148e208059faa552c6 size: 2843 build 29-Mar-2019 14:45:38 The push refers to repository [docker.io/clowder/extractors-wordcount] build 29-Mar-2019 14:45:38 6ba832e1fdea: Preparing build 29-Mar-2019 14:45:38 a16f9ff0cb20: Preparing build 29-Mar-2019 14:45:38 ae7d6e77cdc7: Preparing build 29-Mar-2019 14:45:38 0ec28b023e12: Preparing build 29-Mar-2019 14:45:38 55ca8e0ae119: Preparing build 29-Mar-2019 14:45:38 345af7800239: Preparing build 29-Mar-2019 14:45:38 905d464180ec: Preparing build 29-Mar-2019 14:45:38 deedd32053cf: Preparing build 29-Mar-2019 14:45:38 40d95a294339: Preparing build 29-Mar-2019 14:45:38 297fd071ca2f: Preparing build 29-Mar-2019 14:45:38 2f0d1e8214b2: Preparing build 29-Mar-2019 14:45:38 7dd604ffa87f: Preparing build 29-Mar-2019 14:45:38 aa54c2bc1229: Preparing build 29-Mar-2019 14:45:38 40d95a294339: Waiting build 29-Mar-2019 14:45:38 297fd071ca2f: Waiting build 29-Mar-2019 14:45:38 2f0d1e8214b2: Waiting build 29-Mar-2019 14:45:38 7dd604ffa87f: Waiting build 29-Mar-2019 14:45:38 aa54c2bc1229: Waiting build 29-Mar-2019 14:45:38 345af7800239: Waiting build 29-Mar-2019 14:45:38 905d464180ec: Waiting build 29-Mar-2019 14:45:38 deedd32053cf: Waiting build 29-Mar-2019 14:45:39 55ca8e0ae119: Mounted from clowder/pyclowder-python3 build 29-Mar-2019 14:45:39 0ec28b023e12: Mounted from clowder/pyclowder-python3 build 29-Mar-2019 14:45:39 345af7800239: Mounted from clowder/pyclowder-python3 build 29-Mar-2019 14:45:40 905d464180ec: Mounted from clowder/pyclowder-python3 build 29-Mar-2019 14:45:40 ae7d6e77cdc7: Pushed build 29-Mar-2019 14:45:40 6ba832e1fdea: Pushed build 29-Mar-2019 14:45:40 a16f9ff0cb20: Pushed build 29-Mar-2019 14:45:40 297fd071ca2f: Layer already exists build 29-Mar-2019 14:45:40 deedd32053cf: Mounted from clowder/pyclowder-python3 build 29-Mar-2019 14:45:40 2f0d1e8214b2: Layer already exists build 29-Mar-2019 14:45:40 40d95a294339: Mounted from clowder/pyclowder-python3 build 29-Mar-2019 14:45:40 7dd604ffa87f: Layer already exists build 29-Mar-2019 14:45:40 aa54c2bc1229: Layer already exists build 29-Mar-2019 14:45:42 develop: digest: sha256:15d9a21c7af9a46c44bf8043c5be7660fee24611f4700183e24ce07b976fe574 size: 3026 build 29-Mar-2019 14:45:43 The push refers to repository [docker.io/clowder/pyclowder] build 29-Mar-2019 14:45:43 0ec28b023e12: Preparing build 29-Mar-2019 14:45:43 55ca8e0ae119: Preparing build 29-Mar-2019 14:45:43 345af7800239: Preparing build 29-Mar-2019 14:45:43 905d464180ec: Preparing build 29-Mar-2019 14:45:43 deedd32053cf: Preparing build 29-Mar-2019 14:45:43 40d95a294339: Preparing build 29-Mar-2019 14:45:43 297fd071ca2f: Preparing build 29-Mar-2019 14:45:43 2f0d1e8214b2: Preparing build 29-Mar-2019 14:45:43 7dd604ffa87f: Preparing build 29-Mar-2019 14:45:43 aa54c2bc1229: Preparing build 29-Mar-2019 14:45:43 297fd071ca2f: Waiting build 29-Mar-2019 14:45:43 2f0d1e8214b2: Waiting build 29-Mar-2019 14:45:43 7dd604ffa87f: Waiting build 29-Mar-2019 14:45:43 40d95a294339: Waiting build 29-Mar-2019 14:45:43 345af7800239: Layer already exists build 29-Mar-2019 14:45:43 0ec28b023e12: Layer already exists build 29-Mar-2019 14:45:43 deedd32053cf: Layer already exists build 29-Mar-2019 14:45:43 55ca8e0ae119: Layer already exists build 29-Mar-2019 14:45:43 905d464180ec: Layer already exists build 29-Mar-2019 14:45:43 2f0d1e8214b2: Layer already exists build 29-Mar-2019 14:45:43 aa54c2bc1229: Layer already exists build 29-Mar-2019 14:45:43 297fd071ca2f: Layer already exists build 29-Mar-2019 14:45:43 40d95a294339: Layer already exists build 29-Mar-2019 14:45:43 7dd604ffa87f: Layer already exists build 29-Mar-2019 14:45:45 develop-onbuild: digest: sha256:0e513820c8bfd3da3f832c867b8f7dbda79c3c10f72d3cecfdc71eeeb0fbfc61 size: 2404 build 29-Mar-2019 14:45:46 The push refers to repository [docker.io/clowder/pyclowder-python3] build 29-Mar-2019 14:45:46 0ec28b023e12: Preparing build 29-Mar-2019 14:45:46 55ca8e0ae119: Preparing build 29-Mar-2019 14:45:46 345af7800239: Preparing build 29-Mar-2019 14:45:46 905d464180ec: Preparing build 29-Mar-2019 14:45:46 deedd32053cf: Preparing build 29-Mar-2019 14:45:46 40d95a294339: Preparing build 29-Mar-2019 14:45:46 297fd071ca2f: Preparing build 29-Mar-2019 14:45:46 2f0d1e8214b2: Preparing build 29-Mar-2019 14:45:46 7dd604ffa87f: Preparing build 29-Mar-2019 14:45:46 aa54c2bc1229: Preparing build 29-Mar-2019 14:45:46 40d95a294339: Waiting build 29-Mar-2019 14:45:46 297fd071ca2f: Waiting build 29-Mar-2019 14:45:46 2f0d1e8214b2: Waiting build 29-Mar-2019 14:45:46 7dd604ffa87f: Waiting build 29-Mar-2019 14:45:46 aa54c2bc1229: Waiting build 29-Mar-2019 14:45:46 345af7800239: Layer already exists build 29-Mar-2019 14:45:46 0ec28b023e12: Layer already exists build 29-Mar-2019 14:45:46 55ca8e0ae119: Layer already exists build 29-Mar-2019 14:45:46 905d464180ec: Layer already exists build 29-Mar-2019 14:45:46 deedd32053cf: Layer already exists build 29-Mar-2019 14:45:46 2f0d1e8214b2: Layer already exists build 29-Mar-2019 14:45:46 297fd071ca2f: Layer already exists build 29-Mar-2019 14:45:46 40d95a294339: Layer already exists build 29-Mar-2019 14:45:46 7dd604ffa87f: Layer already exists build 29-Mar-2019 14:45:46 aa54c2bc1229: Layer already exists build 29-Mar-2019 14:45:48 develop-onbuild: digest: sha256:0e513820c8bfd3da3f832c867b8f7dbda79c3c10f72d3cecfdc71eeeb0fbfc61 size: 2404 build 29-Mar-2019 14:45:48 The push refers to repository [docker.io/clowder/extractors-binary-preview] build 29-Mar-2019 14:45:48 033164556daf: Preparing build 29-Mar-2019 14:45:48 74d61193db3d: Preparing build 29-Mar-2019 14:45:48 b9e09cc6ae0f: Preparing build 29-Mar-2019 14:45:48 0ec28b023e12: Preparing build 29-Mar-2019 14:45:48 55ca8e0ae119: Preparing build 29-Mar-2019 14:45:48 345af7800239: Preparing build 29-Mar-2019 14:45:48 905d464180ec: Preparing build 29-Mar-2019 14:45:48 deedd32053cf: Preparing build 29-Mar-2019 14:45:48 40d95a294339: Preparing build 29-Mar-2019 14:45:48 905d464180ec: Waiting build 29-Mar-2019 14:45:48 345af7800239: Waiting build 29-Mar-2019 14:45:48 deedd32053cf: Waiting build 29-Mar-2019 14:45:48 297fd071ca2f: Preparing build 29-Mar-2019 14:45:48 2f0d1e8214b2: Preparing build 29-Mar-2019 14:45:48 7dd604ffa87f: Preparing build 29-Mar-2019 14:45:48 aa54c2bc1229: Preparing build 29-Mar-2019 14:45:48 40d95a294339: Waiting build 29-Mar-2019 14:45:48 2f0d1e8214b2: Waiting build 29-Mar-2019 14:45:48 7dd604ffa87f: Waiting build 29-Mar-2019 14:45:48 297fd071ca2f: Waiting build 29-Mar-2019 14:45:49 55ca8e0ae119: Mounted from clowder/extractors-wordcount build 29-Mar-2019 14:45:49 0ec28b023e12: Mounted from clowder/extractors-wordcount build 29-Mar-2019 14:45:50 345af7800239: Mounted from clowder/extractors-wordcount build 29-Mar-2019 14:45:50 905d464180ec: Mounted from clowder/extractors-wordcount build 29-Mar-2019 14:45:50 74d61193db3d: Pushed build 29-Mar-2019 14:45:50 b9e09cc6ae0f: Pushed build 29-Mar-2019 14:45:50 297fd071ca2f: Layer already exists build 29-Mar-2019 14:45:50 deedd32053cf: Mounted from clowder/extractors-wordcount build 29-Mar-2019 14:45:50 2f0d1e8214b2: Layer already exists build 29-Mar-2019 14:45:51 7dd604ffa87f: Layer already exists build 29-Mar-2019 14:45:51 aa54c2bc1229: Layer already exists build 29-Mar-2019 14:45:51 40d95a294339: Mounted from clowder/extractors-wordcount build 29-Mar-2019 14:45:51 033164556daf: Pushed build 29-Mar-2019 14:45:53 develop-onbuild: digest: sha256:ce11d1d28cc164e0089fdd3d2d614bc156f007cb8c4a71b903cc42701f44adb9 size: 3026 build 29-Mar-2019 14:45:53 The push refers to repository [docker.io/clowder/extractors-simple-extractor] build 29-Mar-2019 14:45:53 403ce88e4687: Preparing build 29-Mar-2019 14:45:53 0475d94df55a: Preparing build 29-Mar-2019 14:45:53 501e07bd8e4f: Preparing build 29-Mar-2019 14:45:53 0ec28b023e12: Preparing build 29-Mar-2019 14:45:53 55ca8e0ae119: Preparing build 29-Mar-2019 14:45:53 345af7800239: Preparing build 29-Mar-2019 14:45:53 905d464180ec: Preparing build 29-Mar-2019 14:45:53 deedd32053cf: Preparing build 29-Mar-2019 14:45:53 40d95a294339: Preparing build 29-Mar-2019 14:45:53 297fd071ca2f: Preparing build 29-Mar-2019 14:45:53 2f0d1e8214b2: Preparing build 29-Mar-2019 14:45:53 7dd604ffa87f: Preparing build 29-Mar-2019 14:45:53 aa54c2bc1229: Preparing build 29-Mar-2019 14:45:53 345af7800239: Waiting build 29-Mar-2019 14:45:53 297fd071ca2f: Waiting build 29-Mar-2019 14:45:53 2f0d1e8214b2: Waiting build 29-Mar-2019 14:45:53 7dd604ffa87f: Waiting build 29-Mar-2019 14:45:53 905d464180ec: Waiting build 29-Mar-2019 14:45:53 aa54c2bc1229: Waiting build 29-Mar-2019 14:45:53 40d95a294339: Waiting build 29-Mar-2019 14:45:54 0ec28b023e12: Mounted from clowder/extractors-binary-preview build 29-Mar-2019 14:45:54 55ca8e0ae119: Mounted from clowder/extractors-binary-preview build 29-Mar-2019 14:45:54 345af7800239: Mounted from clowder/extractors-binary-preview build 29-Mar-2019 14:45:54 501e07bd8e4f: Pushed build 29-Mar-2019 14:45:55 403ce88e4687: Pushed build 29-Mar-2019 14:45:55 905d464180ec: Mounted from clowder/extractors-binary-preview build 29-Mar-2019 14:45:55 0475d94df55a: Pushed build 29-Mar-2019 14:45:55 deedd32053cf: Mounted from clowder/extractors-binary-preview build 29-Mar-2019 14:45:55 2f0d1e8214b2: Layer already exists build 29-Mar-2019 14:45:55 40d95a294339: Mounted from clowder/extractors-binary-preview build 29-Mar-2019 14:45:55 7dd604ffa87f: Layer already exists build 29-Mar-2019 14:45:55 297fd071ca2f: Layer already exists build 29-Mar-2019 14:45:55 aa54c2bc1229: Layer already exists build 29-Mar-2019 14:45:57 develop-onbuild: digest: sha256:0854dc1368ed9b156fed9528619c43de2f371bac0b9b714992bf077c5ae4f12f size: 3027 build 29-Mar-2019 14:45:57 The push refers to repository [docker.io/clowder/extractors-simple-extractor-python3] build 29-Mar-2019 14:45:57 403ce88e4687: Preparing build 29-Mar-2019 14:45:57 0475d94df55a: Preparing build 29-Mar-2019 14:45:57 501e07bd8e4f: Preparing build 29-Mar-2019 14:45:57 0ec28b023e12: Preparing build 29-Mar-2019 14:45:57 55ca8e0ae119: Preparing build 29-Mar-2019 14:45:57 345af7800239: Preparing build 29-Mar-2019 14:45:57 905d464180ec: Preparing build 29-Mar-2019 14:45:57 deedd32053cf: Preparing build 29-Mar-2019 14:45:57 40d95a294339: Preparing build 29-Mar-2019 14:45:57 297fd071ca2f: Preparing build 29-Mar-2019 14:45:57 2f0d1e8214b2: Preparing build 29-Mar-2019 14:45:57 7dd604ffa87f: Preparing build 29-Mar-2019 14:45:57 aa54c2bc1229: Preparing build 29-Mar-2019 14:45:57 345af7800239: Waiting build 29-Mar-2019 14:45:57 905d464180ec: Waiting build 29-Mar-2019 14:45:57 deedd32053cf: Waiting build 29-Mar-2019 14:45:57 40d95a294339: Waiting build 29-Mar-2019 14:45:57 297fd071ca2f: Waiting build 29-Mar-2019 14:45:57 2f0d1e8214b2: Waiting build 29-Mar-2019 14:45:57 7dd604ffa87f: Waiting build 29-Mar-2019 14:45:57 aa54c2bc1229: Waiting build 29-Mar-2019 14:45:58 55ca8e0ae119: Mounted from clowder/extractors-simple-extractor build 29-Mar-2019 14:45:58 0475d94df55a: Mounted from clowder/extractors-simple-extractor build 29-Mar-2019 14:45:58 0ec28b023e12: Mounted from clowder/extractors-simple-extractor build 29-Mar-2019 14:45:58 501e07bd8e4f: Mounted from clowder/extractors-simple-extractor build 29-Mar-2019 14:45:59 403ce88e4687: Mounted from clowder/extractors-simple-extractor build 29-Mar-2019 14:45:59 345af7800239: Mounted from clowder/extractors-simple-extractor build 29-Mar-2019 14:45:59 297fd071ca2f: Layer already exists build 29-Mar-2019 14:45:59 905d464180ec: Mounted from clowder/extractors-simple-extractor build 29-Mar-2019 14:46:00 2f0d1e8214b2: Layer already exists build 29-Mar-2019 14:46:00 7dd604ffa87f: Layer already exists build 29-Mar-2019 14:46:00 deedd32053cf: Mounted from clowder/extractors-simple-extractor build 29-Mar-2019 14:46:00 aa54c2bc1229: Layer already exists build 29-Mar-2019 14:46:00 40d95a294339: Mounted from clowder/extractors-simple-extractor build 29-Mar-2019 14:46:02 develop-onbuild: digest: sha256:0854dc1368ed9b156fed9528619c43de2f371bac0b9b714992bf077c5ae4f12f size: 3027 build 29-Mar-2019 14:46:02 The push refers to repository [docker.io/clowder/extractors-simple-r-extractor] build 29-Mar-2019 14:46:02 32d2d98a9807: Preparing build 29-Mar-2019 14:46:02 8c593e9751e1: Preparing build 29-Mar-2019 14:46:02 0ec28b023e12: Preparing build 29-Mar-2019 14:46:02 55ca8e0ae119: Preparing build 29-Mar-2019 14:46:02 345af7800239: Preparing build 29-Mar-2019 14:46:02 905d464180ec: Preparing build 29-Mar-2019 14:46:02 deedd32053cf: Preparing build 29-Mar-2019 14:46:02 40d95a294339: Preparing build 29-Mar-2019 14:46:02 297fd071ca2f: Preparing build 29-Mar-2019 14:46:02 2f0d1e8214b2: Preparing build 29-Mar-2019 14:46:02 7dd604ffa87f: Preparing build 29-Mar-2019 14:46:02 aa54c2bc1229: Preparing build 29-Mar-2019 14:46:02 905d464180ec: Waiting build 29-Mar-2019 14:46:02 deedd32053cf: Waiting build 29-Mar-2019 14:46:02 40d95a294339: Waiting build 29-Mar-2019 14:46:02 297fd071ca2f: Waiting build 29-Mar-2019 14:46:02 2f0d1e8214b2: Waiting build 29-Mar-2019 14:46:02 7dd604ffa87f: Waiting build 29-Mar-2019 14:46:02 aa54c2bc1229: Waiting build 29-Mar-2019 14:46:03 345af7800239: Mounted from clowder/extractors-simple-extractor-python3 build 29-Mar-2019 14:46:03 55ca8e0ae119: Mounted from clowder/extractors-simple-extractor-python3 build 29-Mar-2019 14:46:03 0ec28b023e12: Mounted from clowder/extractors-simple-extractor-python3 build 29-Mar-2019 14:46:04 deedd32053cf: Mounted from clowder/extractors-simple-extractor-python3 build 29-Mar-2019 14:46:04 905d464180ec: Mounted from clowder/extractors-simple-extractor-python3 build 29-Mar-2019 14:46:04 32d2d98a9807: Pushed build 29-Mar-2019 14:46:04 40d95a294339: Mounted from clowder/extractors-simple-extractor-python3 build 29-Mar-2019 14:46:04 297fd071ca2f: Layer already exists build 29-Mar-2019 14:46:04 2f0d1e8214b2: Layer already exists build 29-Mar-2019 14:46:05 7dd604ffa87f: Layer already exists build 29-Mar-2019 14:46:05 aa54c2bc1229: Layer already exists build 29-Mar-2019 14:47:14 8c593e9751e1: Pushed build 29-Mar-2019 14:47:16 develop-onbuild: digest: sha256:4d5700c5b5b1d49302aade9bfe0b357afc2032a10ee14410ba09c8170ab06168 size: 2824 build 29-Mar-2019 14:47:16 The push refers to repository [docker.io/clowder/extractors-simple-r-extractor-python3] build 29-Mar-2019 14:47:16 32d2d98a9807: Preparing build 29-Mar-2019 14:47:16 8c593e9751e1: Preparing build 29-Mar-2019 14:47:16 0ec28b023e12: Preparing build 29-Mar-2019 14:47:16 55ca8e0ae119: Preparing build 29-Mar-2019 14:47:16 345af7800239: Preparing build 29-Mar-2019 14:47:16 905d464180ec: Preparing build 29-Mar-2019 14:47:16 deedd32053cf: Preparing build 29-Mar-2019 14:47:16 40d95a294339: Preparing build 29-Mar-2019 14:47:16 297fd071ca2f: Preparing build 29-Mar-2019 14:47:16 2f0d1e8214b2: Preparing build 29-Mar-2019 14:47:16 7dd604ffa87f: Preparing build 29-Mar-2019 14:47:16 aa54c2bc1229: Preparing build 29-Mar-2019 14:47:16 905d464180ec: Waiting build 29-Mar-2019 14:47:16 deedd32053cf: Waiting build 29-Mar-2019 14:47:16 297fd071ca2f: Waiting build 29-Mar-2019 14:47:16 40d95a294339: Waiting build 29-Mar-2019 14:47:16 2f0d1e8214b2: Waiting build 29-Mar-2019 14:47:16 7dd604ffa87f: Waiting build 29-Mar-2019 14:47:16 aa54c2bc1229: Waiting build 29-Mar-2019 14:47:18 0ec28b023e12: Mounted from clowder/extractors-simple-r-extractor build 29-Mar-2019 14:47:18 55ca8e0ae119: Mounted from clowder/extractors-simple-r-extractor build 29-Mar-2019 14:47:18 32d2d98a9807: Mounted from clowder/extractors-simple-r-extractor build 29-Mar-2019 14:47:18 345af7800239: Mounted from clowder/extractors-simple-r-extractor build 29-Mar-2019 14:47:18 8c593e9751e1: Mounted from clowder/extractors-simple-r-extractor build 29-Mar-2019 14:47:18 297fd071ca2f: Layer already exists build 29-Mar-2019 14:47:18 905d464180ec: Mounted from clowder/extractors-simple-r-extractor build 29-Mar-2019 14:47:18 2f0d1e8214b2: Layer already exists build 29-Mar-2019 14:47:18 deedd32053cf: Mounted from clowder/extractors-simple-r-extractor build 29-Mar-2019 14:47:18 7dd604ffa87f: Layer already exists build 29-Mar-2019 14:47:19 aa54c2bc1229: Layer already exists build 29-Mar-2019 14:47:19 40d95a294339: Mounted from clowder/extractors-simple-r-extractor build 29-Mar-2019 14:47:20 develop-onbuild: digest: sha256:4d5700c5b5b1d49302aade9bfe0b357afc2032a10ee14410ba09c8170ab06168 size: 2824 simple 29-Mar-2019 14:47:20 Finished task 'docker push' with result: Success simple 29-Mar-2019 14:47:20 Starting task 'test results' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit' simple 29-Mar-2019 14:47:20 Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1... simple 29-Mar-2019 14:47:20 Finished task 'test results' with result: Success simple 29-Mar-2019 14:47:20 Running post build plugin 'Docker Container Cleanup' simple 29-Mar-2019 14:47:20 Running post build plugin 'NCover Results Collector' simple 29-Mar-2019 14:47:20 Running post build plugin 'Clover Results Collector' simple 29-Mar-2019 14:47:20 Running post build plugin 'npm Cache Cleanup' simple 29-Mar-2019 14:47:20 Running post build plugin 'Artifact Copier' simple 29-Mar-2019 14:47:20 Finalising the build... simple 29-Mar-2019 14:47:20 Stopping timer. simple 29-Mar-2019 14:47:20 Build CATS-PYC265-JOB1-23 completed. simple 29-Mar-2019 14:47:20 Running on server: post build plugin 'NCover Results Collector' simple 29-Mar-2019 14:47:20 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 29-Mar-2019 14:47:20 Running on server: post build plugin 'Clover Delta Calculator' simple 29-Mar-2019 14:47:20 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 29-Mar-2019 14:47:20 All post build plugins have finished simple 29-Mar-2019 14:47:20 Generating build results summary... simple 29-Mar-2019 14:47:20 Saving build results to disk... simple 29-Mar-2019 14:47:20 Logging substituted variables... simple 29-Mar-2019 14:47:20 Indexing build results... simple 29-Mar-2019 14:47:20 Finished building CATS-PYC265-JOB1-23.