simple 22-May-2019 15:09:11 Build Clowder - pyclowder2 - clowder-clients-clean - Default Job #20 (CATS-PYC267-JOB1-20) started building on agent buildserver-1.os.ncsa.edu simple 22-May-2019 15:09:11 Remote agent on host buildserver-1.os.ncsa.edu simple 22-May-2019 15:09:11 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1 simple 22-May-2019 15:09:11 Executing build Clowder - pyclowder2 - clowder-clients-clean - Default Job #20 (CATS-PYC267-JOB1-20) simple 22-May-2019 15:09:11 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 22-May-2019 15:09:11 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1 simple 22-May-2019 15:09:11 Updating source code to revision: 8613f687206139c3760f91dacb3b39f19ae7cc8a simple 22-May-2019 15:09:11 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1/.git'. simple 22-May-2019 15:09:11 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1/.git/ simple 22-May-2019 15:09:50 Fetching 'refs/heads/clowder-clients-clean' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git'. Will try to do a shallow fetch. simple 22-May-2019 15:09:50 Warning: Permanently added '[127.0.0.1]:44008' (RSA) to the list of known hosts. simple 22-May-2019 15:09:50 From ssh://127.0.0.1:44008/cats/pyclowder2 simple 22-May-2019 15:09:50 * [new branch] clowder-clients-clean -> clowder-clients-clean simple 22-May-2019 15:09:50 Checking out revision 8613f687206139c3760f91dacb3b39f19ae7cc8a. simple 22-May-2019 15:09:50 Switched to branch 'clowder-clients-clean' simple 22-May-2019 15:09:50 Updated source code to revision: 8613f687206139c3760f91dacb3b39f19ae7cc8a simple 22-May-2019 15:09:50 Finished task 'Checkout Default Repository' with result: Success simple 22-May-2019 15:09:50 Running pre-build action: VCS Version Collector simple 22-May-2019 15:09:50 Starting task 'python 2 - pytest' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 22-May-2019 15:09:51 Beginning to execute external process for build 'Clowder - pyclowder2 - clowder-clients-clean - Default Job #20 (CATS-PYC267-JOB1-20)'\n ... running command line: \n/home/bamboo/bamboo-agent-home/temp/CATS-PYC267-JOB1-20-ScriptBuildTask-7513751674880114658.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=clowder-clients-clean\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_repository_157745170_git_branch=clowder-clients-clean\nbamboo_planRepository_1_branchDisplayName=clowder-clients-clean\nbamboo_repository_revision_number=8613f687206139c3760f91dacb3b39f19ae7cc8a\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC267-JOB1-20\nbamboo_repository_157745170_revision_number=8613f687206139c3760f91dacb3b39f19ae7cc8a\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1\nbamboo_planRepository_1_name=pyclowder2\nbamboo_buildKey=CATS-PYC267-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=clowder-clients-clean\nbamboo_planRepository_name=pyclowder2\nbamboo_buildNumber=20\nbamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt\nbamboo_repository_157745170_name=pyclowder2\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC267-JOB1-20\nbamboo_repository_157745170_previous_revision_number=44a25ac14e21f81c56eea5a8eaff43dbba852ab8\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_agentId=140673027\nbamboo_planName=Clowder - 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Please upgrade your Python as Python 2.7 won't be maintained after that date. 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Uninstalling wheel-0.33.4: build 22-May-2019 15:09:56 Successfully uninstalled wheel-0.33.4 build 22-May-2019 15:09:56 Successfully installed PyYAML-5.1 apipkg-1.5 atomicwrites-1.3.0 attrs-19.1.0 certifi-2019.3.9 chardet-3.0.4 enum34-1.1.6 execnet-1.6.0 funcsigs-1.0.2 idna-2.8 more-itertools-5.0.0 pathlib2-2.3.3 pep8-1.7.1 pika-1.0.0 pluggy-0.11.0 py-1.8.0 pytest-4.3.1 pytest-cache-1.0 pytest-pep8-1.0.6 requests-2.21.0 scandir-1.10.0 six-1.12.0 urllib3-1.24.1 wheel-0.33.1 build 22-May-2019 15:09:57 ============================= test session starts ============================== build 22-May-2019 15:09:57 platform linux2 -- Python 2.7.12, pytest-4.3.1, py-1.8.0, pluggy-0.11.0 build 22-May-2019 15:09:57 rootdir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1, inifile: setup.cfg build 22-May-2019 15:09:57 plugins: pep8-1.0.6 build 22-May-2019 15:09:57 collected 20 items build 22-May-2019 15:09:57 build 22-May-2019 15:09:57 setup.py . build 22-May-2019 15:09:57 contrib/monitor/monitor.py . build 22-May-2019 15:09:57 docs/source/conf.py . build 22-May-2019 15:09:57 pyclowder/__init__.py . build 22-May-2019 15:09:57 pyclowder/client.py . build 22-May-2019 15:09:57 pyclowder/collections.py . build 22-May-2019 15:09:57 pyclowder/connectors.py . build 22-May-2019 15:09:57 pyclowder/datasets.py . build 22-May-2019 15:09:57 pyclowder/extractors.py . build 22-May-2019 15:09:57 pyclowder/files.py . build 22-May-2019 15:09:57 pyclowder/geostreams.py . build 22-May-2019 15:09:57 pyclowder/sections.py . build 22-May-2019 15:09:57 pyclowder/utils.py . build 22-May-2019 15:09:57 sample-extractors/binary-preview/binary_extractor.py . build 22-May-2019 15:09:57 sample-extractors/echo/echo.py . build 22-May-2019 15:09:57 sample-extractors/simple-extractor/simple_extractor.py . build 22-May-2019 15:09:57 sample-extractors/simple-r-extractor/r_extractor.py . build 22-May-2019 15:09:57 sample-extractors/wordcount/wordcount.py . build 22-May-2019 15:09:57 sample-extractors/wordcount-simple-extractor/wordcount.py . build 22-May-2019 15:09:57 tests/clientTest.py . build 22-May-2019 15:09:57 build 22-May-2019 15:09:57 - generated xml file: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1/test-reports/results-p2.xml - build 22-May-2019 15:09:57 ========================== 20 passed in 0.43 seconds =========================== simple 22-May-2019 15:09:58 Finished task 'python 2 - pytest' with result: Success simple 22-May-2019 15:09:58 Starting task 'python 3 - pytest' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 22-May-2019 15:09:58 Beginning to execute external process for build 'Clowder - pyclowder2 - clowder-clients-clean - Default Job #20 (CATS-PYC267-JOB1-20)'\n ... running command line: \n/home/bamboo/bamboo-agent-home/temp/CATS-PYC267-JOB1-20-ScriptBuildTask-293446221152069716.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1\n ... using extra environment 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build 22-May-2019 15:09:58 Already using interpreter /usr/bin/python3 build 22-May-2019 15:09:58 Using base prefix '/usr' build 22-May-2019 15:09:58 New python executable in /tmp/virtualenv/pyclowder2-p3/bin/python3 build 22-May-2019 15:09:58 Also creating executable in /tmp/virtualenv/pyclowder2-p3/bin/python build 22-May-2019 15:10:01 Installing setuptools, pkg_resources, pip, wheel...done. build 22-May-2019 15:10:01 Collecting enum34==1.1.6 (from -r requirements.txt (line 1)) build 22-May-2019 15:10:02 Using cached https://files.pythonhosted.org/packages/af/42/cb9355df32c69b553e72a2e28daee25d1611d2c0d9c272aa1d34204205b2/enum34-1.1.6-py3-none-any.whl build 22-May-2019 15:10:02 Collecting pika==1.0.0 (from -r requirements.txt (line 2)) build 22-May-2019 15:10:02 Using cached https://files.pythonhosted.org/packages/53/a4/5aff2293e1cdcf5f77447ebdfeaac99b622aef7d1e723cf9a5fe317b077c/pika-1.0.0-py2.py3-none-any.whl build 22-May-2019 15:10:02 Collecting PyYAML==5.1 (from -r 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attrs-19.1.0 certifi-2019.3.9 chardet-3.0.4 enum34-1.1.6 execnet-1.6.0 idna-2.8 more-itertools-7.0.0 pathlib2-2.3.3 pep8-1.7.1 pika-1.0.0 pluggy-0.11.0 py-1.8.0 pytest-4.3.1 pytest-cache-1.0 pytest-pep8-1.0.6 requests-2.21.0 six-1.12.0 urllib3-1.24.1 wheel-0.33.1 build 22-May-2019 15:10:04 ============================= test session starts ============================== build 22-May-2019 15:10:04 platform linux -- Python 3.5.2, pytest-4.3.1, py-1.8.0, pluggy-0.11.0 build 22-May-2019 15:10:04 rootdir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1, inifile: setup.cfg build 22-May-2019 15:10:04 plugins: pep8-1.0.6 build 22-May-2019 15:10:04 collected 20 items build 22-May-2019 15:10:04 build 22-May-2019 15:10:05 setup.py . build 22-May-2019 15:10:05 contrib/monitor/monitor.py . build 22-May-2019 15:10:05 docs/source/conf.py . build 22-May-2019 15:10:05 pyclowder/__init__.py . build 22-May-2019 15:10:05 pyclowder/client.py . build 22-May-2019 15:10:05 pyclowder/collections.py . build 22-May-2019 15:10:05 pyclowder/connectors.py . build 22-May-2019 15:10:05 pyclowder/datasets.py . build 22-May-2019 15:10:05 pyclowder/extractors.py . build 22-May-2019 15:10:05 pyclowder/files.py . build 22-May-2019 15:10:05 pyclowder/geostreams.py . build 22-May-2019 15:10:05 pyclowder/sections.py . build 22-May-2019 15:10:05 pyclowder/utils.py . build 22-May-2019 15:10:05 sample-extractors/binary-preview/binary_extractor.py . build 22-May-2019 15:10:05 sample-extractors/echo/echo.py . build 22-May-2019 15:10:05 sample-extractors/simple-extractor/simple_extractor.py . build 22-May-2019 15:10:05 sample-extractors/simple-r-extractor/r_extractor.py . build 22-May-2019 15:10:05 sample-extractors/wordcount/wordcount.py . build 22-May-2019 15:10:05 sample-extractors/wordcount-simple-extractor/wordcount.py . build 22-May-2019 15:10:05 tests/clientTest.py . build 22-May-2019 15:10:05 build 22-May-2019 15:10:05 - generated xml file: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1/test-reports/results-p3.xml - build 22-May-2019 15:10:05 ========================== 20 passed in 0.49 seconds =========================== simple 22-May-2019 15:10:05 Finished task 'python 3 - pytest' with result: Success simple 22-May-2019 15:10:05 Starting task 'docker build' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 22-May-2019 15:10:05 Beginning to execute external process for build 'Clowder - pyclowder2 - clowder-clients-clean - Default Job #20 (CATS-PYC267-JOB1-20)'\n ... running command line: \n/bin/sh docker.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1\n ... using extra environment variables: 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- pyclowder2 - clowder-clients-clean - Default Job\nbamboo_planRepository_1_revision=8613f687206139c3760f91dacb3b39f19ae7cc8a\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=pyclowder2\nbamboo_repository_157745170_branch_name=clowder-clients-clean\nbamboo_repository_157745170_git_username=\nbamboo_buildFailed=false\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_branch=clowder-clients-clean\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=44a25ac14e21f81c56eea5a8eaff43dbba852ab8\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_planRepository_branchDisplayName=clowder-clients-clean\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=clowder-clients-clean\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-157548579\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1\nbamboo_planKey=CATS-PYC267\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_1_branchName=clowder-clients-clean\n build 22-May-2019 15:10:05 Sending build context to Docker daemon 256kB build 22-May-2019 15:10:05 build 22-May-2019 15:10:05 Step 1/9 : FROM ubuntu:16.04 build 22-May-2019 15:10:06 16.04: Pulling from library/ubuntu build 22-May-2019 15:10:06 9ff7e2e5f967: Pulling fs layer build 22-May-2019 15:10:06 59856638ac9f: Pulling fs layer build 22-May-2019 15:10:06 6f317d6d954b: Pulling fs layer build 22-May-2019 15:10:06 a9dde5e2a643: Pulling fs layer build 22-May-2019 15:10:06 a9dde5e2a643: Waiting build 22-May-2019 15:10:07 6f317d6d954b: Verifying Checksum build 22-May-2019 15:10:07 6f317d6d954b: Download complete build 22-May-2019 15:10:07 59856638ac9f: Verifying Checksum build 22-May-2019 15:10:07 59856638ac9f: Download complete build 22-May-2019 15:10:07 a9dde5e2a643: Verifying Checksum build 22-May-2019 15:10:07 a9dde5e2a643: Download complete build 22-May-2019 15:10:08 9ff7e2e5f967: Verifying Checksum build 22-May-2019 15:10:08 9ff7e2e5f967: Download complete build 22-May-2019 15:10:09 9ff7e2e5f967: Pull complete build 22-May-2019 15:10:10 59856638ac9f: Pull complete build 22-May-2019 15:10:10 6f317d6d954b: Pull complete build 22-May-2019 15:10:11 a9dde5e2a643: Pull complete build 22-May-2019 15:10:11 Digest: sha256:cad5e101ab30bb7f7698b277dd49090f520fe063335643990ce8fbd15ff920ef build 22-May-2019 15:10:11 Status: Downloaded newer image for ubuntu:16.04 build 22-May-2019 15:10:11 ---> 2a697363a870 build 22-May-2019 15:10:11 Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" build 22-May-2019 15:10:11 ---> Running in 3167668ef76a build 22-May-2019 15:10:12 Removing intermediate container 3167668ef76a build 22-May-2019 15:10:12 ---> 95bc65a51a8e build 22-May-2019 15:10:12 Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* build 22-May-2019 15:10:12 ---> Running in e42a9e150933 build 22-May-2019 15:10:17 Reading package lists... build 22-May-2019 15:10:17 Building dependency tree... build 22-May-2019 15:10:17 Reading state information... build 22-May-2019 15:10:17 The following additional packages will be installed: build 22-May-2019 15:10:17 ca-certificates libexpat1 libffi6 libpython-stdlib libpython2.7-minimal build 22-May-2019 15:10:17 libpython2.7-stdlib libsqlite3-0 libssl1.0.0 mime-support openssl build 22-May-2019 15:10:17 python-minimal python-pip-whl python2.7 python2.7-minimal build 22-May-2019 15:10:17 Suggested packages: build 22-May-2019 15:10:17 python-doc python-tk python2.7-doc binutils binfmt-support build 22-May-2019 15:10:17 Recommended packages: build 22-May-2019 15:10:17 file build-essential python-all-dev python-setuptools python-wheel build 22-May-2019 15:10:17 The following NEW packages will be installed: build 22-May-2019 15:10:17 ca-certificates libexpat1 libffi6 libpython-stdlib libpython2.7-minimal build 22-May-2019 15:10:17 libpython2.7-stdlib libsqlite3-0 libssl1.0.0 mime-support openssl python build 22-May-2019 15:10:17 python-minimal python-pip python-pip-whl python2.7 python2.7-minimal build 22-May-2019 15:10:18 0 upgraded, 16 newly installed, 0 to remove and 2 not upgraded. build 22-May-2019 15:10:18 Need to get 7391 kB of archives. build 22-May-2019 15:10:18 After this operation, 24.8 MB of additional disk space will be used. build 22-May-2019 15:10:18 Get:1 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-minimal amd64 2.7.12-1ubuntu0~16.04.4 [339 kB] build 22-May-2019 15:10:18 Get:2 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7-minimal amd64 2.7.12-1ubuntu0~16.04.4 [1261 kB] build 22-May-2019 15:10:18 Get:3 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-minimal amd64 2.7.12-1~16.04 [28.1 kB] build 22-May-2019 15:10:18 Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 mime-support all 3.59ubuntu1 [31.0 kB] build 22-May-2019 15:10:18 Get:5 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libexpat1 amd64 2.1.0-7ubuntu0.16.04.3 [71.2 kB] build 22-May-2019 15:10:18 Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libffi6 amd64 3.2.1-4 [17.8 kB] build 22-May-2019 15:10:18 Get:7 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libsqlite3-0 amd64 3.11.0-1ubuntu1.1 [396 kB] build 22-May-2019 15:10:18 Get:8 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libssl1.0.0 amd64 1.0.2g-1ubuntu4.15 [1084 kB] build 22-May-2019 15:10:18 Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-stdlib amd64 2.7.12-1ubuntu0~16.04.4 [1880 kB] build 22-May-2019 15:10:18 Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7 amd64 2.7.12-1ubuntu0~16.04.4 [224 kB] build 22-May-2019 15:10:18 Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython-stdlib amd64 2.7.12-1~16.04 [7768 B] build 22-May-2019 15:10:18 Get:12 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python amd64 2.7.12-1~16.04 [137 kB] build 22-May-2019 15:10:18 Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 openssl amd64 1.0.2g-1ubuntu4.15 [492 kB] build 22-May-2019 15:10:18 Get:14 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 ca-certificates all 20170717~16.04.2 [167 kB] build 22-May-2019 15:10:18 Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 python-pip-whl all 8.1.1-2ubuntu0.4 [1110 kB] build 22-May-2019 15:10:19 Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 python-pip all 8.1.1-2ubuntu0.4 [144 kB] build 22-May-2019 15:10:19 debconf: delaying package configuration, since apt-utils is not installed build 22-May-2019 15:10:19 Fetched 7391 kB in 1s (6199 kB/s) build 22-May-2019 15:10:19 Selecting previously unselected package libpython2.7-minimal:amd64. build 22-May-2019 15:10:19 (Reading database ... build 22-May-2019 15:10:19 (Reading database ... 5% build 22-May-2019 15:10:19 (Reading database ... 10% build 22-May-2019 15:10:19 (Reading database ... 15% build 22-May-2019 15:10:19 (Reading database ... 20% build 22-May-2019 15:10:19 (Reading database ... 25% build 22-May-2019 15:10:19 (Reading database ... 30% build 22-May-2019 15:10:19 (Reading database ... 35% build 22-May-2019 15:10:19 (Reading database ... 40% build 22-May-2019 15:10:19 (Reading database ... 45% build 22-May-2019 15:10:19 (Reading database ... 50% build 22-May-2019 15:10:19 (Reading database ... 55% build 22-May-2019 15:10:19 (Reading database ... 60% build 22-May-2019 15:10:19 (Reading database ... 65% build 22-May-2019 15:10:19 (Reading database ... 70% build 22-May-2019 15:10:19 (Reading database ... 75% build 22-May-2019 15:10:19 (Reading database ... 80% build 22-May-2019 15:10:19 (Reading database ... 85% build 22-May-2019 15:10:19 (Reading database ... 90% build 22-May-2019 15:10:19 (Reading database ... 95% build 22-May-2019 15:10:19 (Reading database ... 100% build 22-May-2019 15:10:19 (Reading database ... 4777 files and directories currently installed.) build 22-May-2019 15:10:19 Preparing to unpack .../libpython2.7-minimal_2.7.12-1ubuntu0~16.04.4_amd64.deb ... build 22-May-2019 15:10:19 Unpacking libpython2.7-minimal:amd64 (2.7.12-1ubuntu0~16.04.4) ... build 22-May-2019 15:10:20 Selecting previously unselected package python2.7-minimal. build 22-May-2019 15:10:20 Preparing to unpack .../python2.7-minimal_2.7.12-1ubuntu0~16.04.4_amd64.deb ... build 22-May-2019 15:10:20 Unpacking python2.7-minimal (2.7.12-1ubuntu0~16.04.4) ... build 22-May-2019 15:10:21 Selecting previously unselected package python-minimal. build 22-May-2019 15:10:21 Preparing to unpack .../python-minimal_2.7.12-1~16.04_amd64.deb ... build 22-May-2019 15:10:21 Unpacking python-minimal (2.7.12-1~16.04) ... build 22-May-2019 15:10:21 Selecting previously unselected package mime-support. build 22-May-2019 15:10:21 Preparing to unpack .../mime-support_3.59ubuntu1_all.deb ... build 22-May-2019 15:10:21 Unpacking mime-support (3.59ubuntu1) ... build 22-May-2019 15:10:22 Selecting previously unselected package libexpat1:amd64. build 22-May-2019 15:10:22 Preparing to unpack .../libexpat1_2.1.0-7ubuntu0.16.04.3_amd64.deb ... build 22-May-2019 15:10:22 Unpacking libexpat1:amd64 (2.1.0-7ubuntu0.16.04.3) ... build 22-May-2019 15:10:23 Selecting previously unselected package libffi6:amd64. build 22-May-2019 15:10:23 Preparing to unpack .../libffi6_3.2.1-4_amd64.deb ... build 22-May-2019 15:10:23 Unpacking libffi6:amd64 (3.2.1-4) ... build 22-May-2019 15:10:23 Selecting previously unselected package libsqlite3-0:amd64. build 22-May-2019 15:10:23 Preparing to unpack .../libsqlite3-0_3.11.0-1ubuntu1.1_amd64.deb ... build 22-May-2019 15:10:23 Unpacking libsqlite3-0:amd64 (3.11.0-1ubuntu1.1) ... build 22-May-2019 15:10:25 Selecting previously unselected package libssl1.0.0:amd64. build 22-May-2019 15:10:25 Preparing to unpack .../libssl1.0.0_1.0.2g-1ubuntu4.15_amd64.deb ... build 22-May-2019 15:10:25 Unpacking libssl1.0.0:amd64 (1.0.2g-1ubuntu4.15) ... build 22-May-2019 15:10:26 Selecting previously unselected package libpython2.7-stdlib:amd64. build 22-May-2019 15:10:26 Preparing to unpack .../libpython2.7-stdlib_2.7.12-1ubuntu0~16.04.4_amd64.deb ... build 22-May-2019 15:10:26 Unpacking libpython2.7-stdlib:amd64 (2.7.12-1ubuntu0~16.04.4) ... build 22-May-2019 15:10:28 Selecting previously unselected package python2.7. build 22-May-2019 15:10:28 Preparing to unpack .../python2.7_2.7.12-1ubuntu0~16.04.4_amd64.deb ... build 22-May-2019 15:10:28 Unpacking python2.7 (2.7.12-1ubuntu0~16.04.4) ... build 22-May-2019 15:10:29 Selecting previously unselected package libpython-stdlib:amd64. build 22-May-2019 15:10:29 Preparing to unpack .../libpython-stdlib_2.7.12-1~16.04_amd64.deb ... build 22-May-2019 15:10:29 Unpacking libpython-stdlib:amd64 (2.7.12-1~16.04) ... build 22-May-2019 15:10:29 Processing triggers for libc-bin (2.23-0ubuntu11) ... build 22-May-2019 15:10:30 Setting up libpython2.7-minimal:amd64 (2.7.12-1ubuntu0~16.04.4) ... build 22-May-2019 15:10:30 Setting up python2.7-minimal (2.7.12-1ubuntu0~16.04.4) ... build 22-May-2019 15:10:31 Linking and byte-compiling packages for runtime python2.7... build 22-May-2019 15:10:31 Setting up python-minimal (2.7.12-1~16.04) ... build 22-May-2019 15:10:32 Selecting previously unselected package python. build 22-May-2019 15:10:32 (Reading database ... build 22-May-2019 15:10:32 (Reading database ... 5% build 22-May-2019 15:10:32 (Reading database ... 10% build 22-May-2019 15:10:32 (Reading database ... 15% build 22-May-2019 15:10:32 (Reading database ... 20% build 22-May-2019 15:10:32 (Reading database ... 25% build 22-May-2019 15:10:32 (Reading database ... 30% build 22-May-2019 15:10:32 (Reading database ... 35% build 22-May-2019 15:10:32 (Reading database ... 40% build 22-May-2019 15:10:32 (Reading database ... 45% build 22-May-2019 15:10:32 (Reading database ... 50% build 22-May-2019 15:10:32 (Reading database ... 55% build 22-May-2019 15:10:32 (Reading database ... 60% build 22-May-2019 15:10:32 (Reading database ... 65% build 22-May-2019 15:10:32 (Reading database ... 70% build 22-May-2019 15:10:32 (Reading database ... 75% build 22-May-2019 15:10:32 (Reading database ... 80% build 22-May-2019 15:10:32 (Reading database ... 85% build 22-May-2019 15:10:32 (Reading database ... 90% build 22-May-2019 15:10:32 (Reading database ... 95% build 22-May-2019 15:10:32 (Reading database ... 100% build 22-May-2019 15:10:32 (Reading database ... 5588 files and directories currently installed.) build 22-May-2019 15:10:32 Preparing to unpack .../python_2.7.12-1~16.04_amd64.deb ... build 22-May-2019 15:10:32 Unpacking python (2.7.12-1~16.04) ... build 22-May-2019 15:10:32 Selecting previously unselected package openssl. build 22-May-2019 15:10:32 Preparing to unpack .../openssl_1.0.2g-1ubuntu4.15_amd64.deb ... build 22-May-2019 15:10:32 Unpacking openssl (1.0.2g-1ubuntu4.15) ... build 22-May-2019 15:10:33 Selecting previously unselected package ca-certificates. build 22-May-2019 15:10:33 Preparing to unpack .../ca-certificates_20170717~16.04.2_all.deb ... build 22-May-2019 15:10:33 Unpacking ca-certificates (20170717~16.04.2) ... build 22-May-2019 15:10:33 Selecting previously unselected package python-pip-whl. build 22-May-2019 15:10:33 Preparing to unpack .../python-pip-whl_8.1.1-2ubuntu0.4_all.deb ... build 22-May-2019 15:10:33 Unpacking python-pip-whl (8.1.1-2ubuntu0.4) ... build 22-May-2019 15:10:34 Selecting previously unselected package python-pip. build 22-May-2019 15:10:34 Preparing to unpack .../python-pip_8.1.1-2ubuntu0.4_all.deb ... build 22-May-2019 15:10:34 Unpacking python-pip (8.1.1-2ubuntu0.4) ... build 22-May-2019 15:10:35 Setting up mime-support (3.59ubuntu1) ... build 22-May-2019 15:10:36 Setting up libexpat1:amd64 (2.1.0-7ubuntu0.16.04.3) ... build 22-May-2019 15:10:36 Setting up libffi6:amd64 (3.2.1-4) ... build 22-May-2019 15:10:36 Setting up libsqlite3-0:amd64 (3.11.0-1ubuntu1.1) ... build 22-May-2019 15:10:36 Setting up libssl1.0.0:amd64 (1.0.2g-1ubuntu4.15) ... build 22-May-2019 15:10:37 debconf: unable to initialize frontend: Dialog build 22-May-2019 15:10:37 debconf: (TERM is not set, so the dialog frontend is not usable.) build 22-May-2019 15:10:37 debconf: falling back to frontend: Readline build 22-May-2019 15:10:37 debconf: unable to initialize frontend: Readline build 22-May-2019 15:10:37 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) build 22-May-2019 15:10:37 debconf: falling back to frontend: Teletype build 22-May-2019 15:10:37 Setting up libpython2.7-stdlib:amd64 (2.7.12-1ubuntu0~16.04.4) ... build 22-May-2019 15:10:37 Setting up python2.7 (2.7.12-1ubuntu0~16.04.4) ... build 22-May-2019 15:10:38 Setting up libpython-stdlib:amd64 (2.7.12-1~16.04) ... build 22-May-2019 15:10:38 Setting up python (2.7.12-1~16.04) ... build 22-May-2019 15:10:39 Setting up openssl (1.0.2g-1ubuntu4.15) ... build 22-May-2019 15:10:39 Setting up ca-certificates (20170717~16.04.2) ... build 22-May-2019 15:10:39 debconf: unable to initialize frontend: Dialog build 22-May-2019 15:10:39 debconf: (TERM is not set, so the dialog frontend is not usable.) build 22-May-2019 15:10:39 debconf: falling back to frontend: Readline build 22-May-2019 15:10:39 debconf: unable to initialize frontend: Readline build 22-May-2019 15:10:39 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) build 22-May-2019 15:10:39 debconf: falling back to frontend: Teletype build 22-May-2019 15:10:42 Setting up python-pip-whl (8.1.1-2ubuntu0.4) ... build 22-May-2019 15:10:42 Setting up python-pip (8.1.1-2ubuntu0.4) ... build 22-May-2019 15:10:43 Processing triggers for libc-bin (2.23-0ubuntu11) ... build 22-May-2019 15:10:44 Processing triggers for ca-certificates (20170717~16.04.2) ... build 22-May-2019 15:10:44 Updating certificates in /etc/ssl/certs... build 22-May-2019 15:10:45 148 added, 0 removed; done. build 22-May-2019 15:10:45 Running hooks in /etc/ca-certificates/update.d... build 22-May-2019 15:10:45 done. build 22-May-2019 15:10:46 Collecting setuptools build 22-May-2019 15:10:47 Downloading https://files.pythonhosted.org/packages/ec/51/f45cea425fd5cb0b0380f5b0f048ebc1da5b417e48d304838c02d6288a1e/setuptools-41.0.1-py2.py3-none-any.whl (575kB) build 22-May-2019 15:10:47 Installing collected packages: setuptools build 22-May-2019 15:10:47 Successfully installed setuptools-41.0.1 build 22-May-2019 15:10:47 You are using pip version 8.1.1, however version 19.1.1 is available. build 22-May-2019 15:10:47 You should consider upgrading via the 'pip install --upgrade pip' command. build 22-May-2019 15:10:49 Removing intermediate container e42a9e150933 build 22-May-2019 15:10:49 ---> 787029ab4149 build 22-May-2019 15:10:49 Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder build 22-May-2019 15:10:50 ---> 56a6c0d95b9d build 22-May-2019 15:10:50 Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/ build 22-May-2019 15:10:50 ---> 1e767772215e build 22-May-2019 15:10:50 Step 6/9 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder build 22-May-2019 15:10:51 ---> Running in 5b316998b2f7 build 22-May-2019 15:10:52 Processing /tmp/pyclowder build 22-May-2019 15:10:52 Collecting enum34==1.1.6 (from pyclowder===2.2.0) build 22-May-2019 15:10:52 Downloading https://files.pythonhosted.org/packages/c5/db/e56e6b4bbac7c4a06de1c50de6fe1ef3810018ae11732a50f15f62c7d050/enum34-1.1.6-py2-none-any.whl build 22-May-2019 15:10:52 Collecting pika==1.0.0 (from pyclowder===2.2.0) build 22-May-2019 15:10:52 Downloading https://files.pythonhosted.org/packages/53/a4/5aff2293e1cdcf5f77447ebdfeaac99b622aef7d1e723cf9a5fe317b077c/pika-1.0.0-py2.py3-none-any.whl (148kB) build 22-May-2019 15:10:52 Collecting PyYAML==5.1 (from pyclowder===2.2.0) build 22-May-2019 15:10:52 Downloading https://files.pythonhosted.org/packages/9f/2c/9417b5c774792634834e730932745bc09a7d36754ca00acf1ccd1ac2594d/PyYAML-5.1.tar.gz (274kB) build 22-May-2019 15:10:53 Collecting requests==2.21.0 (from pyclowder===2.2.0) build 22-May-2019 15:10:53 Downloading https://files.pythonhosted.org/packages/7d/e3/20f3d364d6c8e5d2353c72a67778eb189176f08e873c9900e10c0287b84b/requests-2.21.0-py2.py3-none-any.whl (57kB) build 22-May-2019 15:10:53 Collecting certifi>=2017.4.17 (from requests==2.21.0->pyclowder===2.2.0) build 22-May-2019 15:10:53 Downloading https://files.pythonhosted.org/packages/60/75/f692a584e85b7eaba0e03827b3d51f45f571c2e793dd731e598828d380aa/certifi-2019.3.9-py2.py3-none-any.whl (158kB) build 22-May-2019 15:10:53 Collecting chardet<3.1.0,>=3.0.2 (from requests==2.21.0->pyclowder===2.2.0) build 22-May-2019 15:10:53 Downloading https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl (133kB) build 22-May-2019 15:10:53 Collecting idna<2.9,>=2.5 (from requests==2.21.0->pyclowder===2.2.0) build 22-May-2019 15:10:53 Downloading https://files.pythonhosted.org/packages/14/2c/cd551d81dbe15200be1cf41cd03869a46fe7226e7450af7a6545bfc474c9/idna-2.8-py2.py3-none-any.whl (58kB) build 22-May-2019 15:10:53 Collecting urllib3<1.25,>=1.21.1 (from requests==2.21.0->pyclowder===2.2.0) build 22-May-2019 15:10:53 Downloading https://files.pythonhosted.org/packages/01/11/525b02e4acc0c747de8b6ccdab376331597c569c42ea66ab0a1dbd36eca2/urllib3-1.24.3-py2.py3-none-any.whl (118kB) build 22-May-2019 15:10:53 Building wheels for collected packages: PyYAML build 22-May-2019 15:10:53 Running setup.py bdist_wheel for PyYAML: started build 22-May-2019 15:10:53 Running setup.py bdist_wheel for PyYAML: finished with status 'error' build 22-May-2019 15:10:53 Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-5u90ap/PyYAML/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpBU3pOkpip-wheel- --python-tag cp27: build 22-May-2019 15:10:53 usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] build 22-May-2019 15:10:53 or: -c --help [cmd1 cmd2 ...] build 22-May-2019 15:10:53 or: -c --help-commands build 22-May-2019 15:10:53 or: -c cmd --help build 22-May-2019 15:10:53 build 22-May-2019 15:10:53 error: invalid command 'bdist_wheel' build 22-May-2019 15:10:53 build 22-May-2019 15:10:53 ---------------------------------------- build 22-May-2019 15:10:53  Failed building wheel for PyYAML build 22-May-2019 15:10:53  Running setup.py clean for PyYAML build 22-May-2019 15:10:53 Failed to build PyYAML build 22-May-2019 15:10:53 Installing collected packages: enum34, pika, PyYAML, certifi, chardet, idna, urllib3, requests, pyclowder build 22-May-2019 15:10:53 Running setup.py install for PyYAML: started build 22-May-2019 15:10:54 Running setup.py install for PyYAML: finished with status 'done' build 22-May-2019 15:10:54 Running setup.py install for pyclowder: started build 22-May-2019 15:10:54 Running setup.py install for pyclowder: finished with status 'done' build 22-May-2019 15:10:54 Successfully installed PyYAML-5.1 certifi-2019.3.9 chardet-3.0.4 enum34-1.1.6 idna-2.8 pika-1.0.0 pyclowder-2.2.0 requests-2.21.0 urllib3-1.24.3 build 22-May-2019 15:10:54 You are using pip version 8.1.1, however version 19.1.1 is available. build 22-May-2019 15:10:54 You should consider upgrading via the 'pip install --upgrade pip' command. build 22-May-2019 15:10:56 Removing intermediate container 5b316998b2f7 build 22-May-2019 15:10:56 ---> 7670435254d9 build 22-May-2019 15:10:56 Step 7/9 : WORKDIR /home/clowder build 22-May-2019 15:10:56 ---> Running in 84e2d6b9230c build 22-May-2019 15:10:56 Removing intermediate container 84e2d6b9230c build 22-May-2019 15:10:56 ---> c8c33e184b7a build 22-May-2019 15:10:56 Step 8/9 : COPY notifications.json /home/clowder build 22-May-2019 15:10:57 ---> 9464f55d28bd build 22-May-2019 15:10:57 Step 9/9 : CMD python "./${MAIN_SCRIPT}" build 22-May-2019 15:10:57 ---> Running in 4c95cc399879 build 22-May-2019 15:10:58 Removing intermediate container 4c95cc399879 build 22-May-2019 15:10:58 ---> 2595c4a07dba build 22-May-2019 15:10:58 Successfully built 2595c4a07dba build 22-May-2019 15:10:58 Successfully tagged clowder/pyclowder:latest build 22-May-2019 15:10:58 Sending build context to Docker daemon 254.5kB build 22-May-2019 15:10:58 build 22-May-2019 15:10:58 Step 1/6 : FROM clowder/pyclowder build 22-May-2019 15:10:58 ---> 2595c4a07dba build 22-May-2019 15:10:58 Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 22-May-2019 15:10:58 ---> Running in ad0cbae9b310 build 22-May-2019 15:10:59 Removing intermediate container ad0cbae9b310 build 22-May-2019 15:10:59 ---> ec531484d138 build 22-May-2019 15:10:59 Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 22-May-2019 15:10:59 ---> Running in 0599cf15d72d build 22-May-2019 15:10:59 Removing intermediate container 0599cf15d72d build 22-May-2019 15:10:59 ---> cdf434ea7a1e build 22-May-2019 15:10:59 Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 22-May-2019 15:10:59 ---> Running in 60ea6ae5db79 build 22-May-2019 15:11:00 Removing intermediate container 60ea6ae5db79 build 22-May-2019 15:11:00 ---> e52496b3a7bb build 22-May-2019 15:11:00 Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 22-May-2019 15:11:00 ---> Running in 5fc4dfb9474a build 22-May-2019 15:11:01 Removing intermediate container 5fc4dfb9474a build 22-May-2019 15:11:01 ---> ff1d6c53ee77 build 22-May-2019 15:11:01 Step 6/6 : ONBUILD ADD . /home/clowder/ build 22-May-2019 15:11:01 ---> Running in 95cfffc5b981 build 22-May-2019 15:11:02 Removing intermediate container 95cfffc5b981 build 22-May-2019 15:11:02 ---> e51649d30458 build 22-May-2019 15:11:02 Successfully built e51649d30458 build 22-May-2019 15:11:02 Successfully tagged clowder/pyclowder:onbuild build 22-May-2019 15:11:02 Sending build context to Docker daemon 12.8kB build 22-May-2019 15:11:02 build 22-May-2019 15:11:02 Step 1/5 : FROM clowder/pyclowder:onbuild build 22-May-2019 15:11:02 # Executing 5 build triggers build 22-May-2019 15:11:02 ---> Running in 42b80353c8aa build 22-May-2019 15:11:05 Removing intermediate container 42b80353c8aa build 22-May-2019 15:11:05 ---> Running in cb895003257f build 22-May-2019 15:11:07 Removing intermediate container cb895003257f build 22-May-2019 15:11:08 ---> 6de7e87955dc build 22-May-2019 15:11:08 Step 2/5 : ENV MAIN_SCRIPT="binary_extractor.py" RABBITMQ_QUEUE="" IMAGE_BINARY="" IMAGE_TYPE="" IMAGE_THUMBNAIL_COMMAND="" IMAGE_PREVIEW_COMMAND="" PREVIEW_BINARY="" PREVIEW_TYPE="" PREVIEW_COMMAND="" build 22-May-2019 15:11:08 ---> Running in 6146a94186f2 build 22-May-2019 15:11:09 Removing intermediate container 6146a94186f2 build 22-May-2019 15:11:09 ---> 9df07b88f9a1 build 22-May-2019 15:11:09 Step 3/5 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 22-May-2019 15:11:09 ---> Running in 9d2ec5c9b3f0 build 22-May-2019 15:11:09 Removing intermediate container 9d2ec5c9b3f0 build 22-May-2019 15:11:09 ---> f0ec0fffb21c build 22-May-2019 15:11:09 Step 4/5 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 22-May-2019 15:11:09 ---> Running in 048b99b5a0e1 build 22-May-2019 15:11:10 Removing intermediate container 048b99b5a0e1 build 22-May-2019 15:11:10 ---> 8336eeed57be build 22-May-2019 15:11:10 Step 5/5 : ONBUILD COPY extractor_info.json /home/clowder/ build 22-May-2019 15:11:10 ---> Running in 0303f9e3ec90 build 22-May-2019 15:11:10 Removing intermediate container 0303f9e3ec90 build 22-May-2019 15:11:10 ---> 4006bfdb172b build 22-May-2019 15:11:10 Successfully built 4006bfdb172b build 22-May-2019 15:11:10 Successfully tagged clowder/extractors-binary-preview:onbuild build 22-May-2019 15:11:10 Sending build context to Docker daemon 6.656kB build 22-May-2019 15:11:10 build 22-May-2019 15:11:10 Step 1/9 : FROM clowder/pyclowder:onbuild build 22-May-2019 15:11:10 # Executing 5 build triggers build 22-May-2019 15:11:11 ---> Running in b28e1a258f0a build 22-May-2019 15:11:13 Removing intermediate container b28e1a258f0a build 22-May-2019 15:11:14 ---> Running in aafbb20dd8f1 build 22-May-2019 15:11:15 Removing intermediate container aafbb20dd8f1 build 22-May-2019 15:11:15 ---> 23937e000553 build 22-May-2019 15:11:15 Step 2/9 : ENV EXTRACTION_FUNC="" build 22-May-2019 15:11:16 ---> Running in 66fb54e9d33f build 22-May-2019 15:11:16 Removing intermediate container 66fb54e9d33f build 22-May-2019 15:11:16 ---> b623e6289c01 build 22-May-2019 15:11:16 Step 3/9 : ENV EXTRACTION_MODULE="" build 22-May-2019 15:11:17 ---> Running in fd419bc45410 build 22-May-2019 15:11:17 Removing intermediate container fd419bc45410 build 22-May-2019 15:11:17 ---> aeb1347dd007 build 22-May-2019 15:11:17 Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 22-May-2019 15:11:17 ---> Running in 09c2f1fa03a2 build 22-May-2019 15:11:18 Removing intermediate container 09c2f1fa03a2 build 22-May-2019 15:11:18 ---> 766515be00ec build 22-May-2019 15:11:18 Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 22-May-2019 15:11:18 ---> Running in 957837d5bd64 build 22-May-2019 15:11:18 Removing intermediate container 957837d5bd64 build 22-May-2019 15:11:18 ---> 52d8342478fd build 22-May-2019 15:11:18 Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 22-May-2019 15:11:18 ---> Running in 902338ec6479 build 22-May-2019 15:11:19 Removing intermediate container 902338ec6479 build 22-May-2019 15:11:19 ---> 1a7363716ccb build 22-May-2019 15:11:19 Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 22-May-2019 15:11:19 ---> Running in b67f84a6a821 build 22-May-2019 15:11:19 Removing intermediate container b67f84a6a821 build 22-May-2019 15:11:19 ---> 9102cafac4fe build 22-May-2019 15:11:19 Step 8/9 : ONBUILD ADD . /home/clowder/ build 22-May-2019 15:11:19 ---> Running in 26b36f99bd03 build 22-May-2019 15:11:20 Removing intermediate container 26b36f99bd03 build 22-May-2019 15:11:20 ---> 6d4375274c24 build 22-May-2019 15:11:20 Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" build 22-May-2019 15:11:20 ---> Running in a7da3fb656d8 build 22-May-2019 15:11:21 Removing intermediate container a7da3fb656d8 build 22-May-2019 15:11:21 ---> 0efbc860cdf8 build 22-May-2019 15:11:21 Successfully built 0efbc860cdf8 build 22-May-2019 15:11:21 Successfully tagged clowder/extractors-simple-extractor:onbuild build 22-May-2019 15:11:21 Sending build context to Docker daemon 13.31kB build 22-May-2019 15:11:21 build 22-May-2019 15:11:21 Step 1/10 : FROM clowder/pyclowder:latest build 22-May-2019 15:11:21 ---> 2595c4a07dba build 22-May-2019 15:11:21 Step 2/10 : ENV R_SCRIPT="" R_FUNCTION="" build 22-May-2019 15:11:21 ---> Running in c3812f0c320b build 22-May-2019 15:11:22 Removing intermediate container c3812f0c320b build 22-May-2019 15:11:22 ---> 50a6265f91c4 build 22-May-2019 15:11:22 Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" build 22-May-2019 15:11:22 ---> Running in 4b8c87fbe7d5 build 22-May-2019 15:11:23 Executing: /tmp/tmp.NUUindB8Ym/gpg.1.sh --keyserver build 22-May-2019 15:11:24 keyserver.ubuntu.com build 22-May-2019 15:11:24 --recv build 22-May-2019 15:11:24 E084DAB9 build 22-May-2019 15:11:24 gpg: requesting key E084DAB9 from hkp server keyserver.ubuntu.com build 22-May-2019 15:11:24 gpg: key E084DAB9: public key "Totally Legit Signing Key " imported build 22-May-2019 15:11:24 gpg: key E084DAB9: public key "Michael Rutter " imported build 22-May-2019 15:11:24 gpg: Total number processed: 2 build 22-May-2019 15:11:24 gpg:  imported: 2 (RSA: 2) build 22-May-2019 15:11:28 Reading package lists... build 22-May-2019 15:11:29 Building dependency tree... build 22-May-2019 15:11:29 Reading state information... build 22-May-2019 15:11:29 The following additional packages will be installed: build 22-May-2019 15:11:29 autoconf automake autotools-dev binutils bsdmainutils build-essential bzip2 build 22-May-2019 15:11:29 cdbs cpp cpp-5 debhelper dh-strip-nondeterminism dh-translations dpkg-dev build 22-May-2019 15:11:29 file fontconfig fontconfig-config fonts-dejavu-core g++ g++-5 gcc gcc-5 build 22-May-2019 15:11:29 gettext gettext-base gfortran gfortran-5 groff-base icu-devtools intltool build 22-May-2019 15:11:29 intltool-debian libarchive-zip-perl libasan2 libasn1-8-heimdal build 22-May-2019 15:11:29 libasprintf0v5 libatomic1 libblas-common libblas-dev libblas3 libbz2-dev build 22-May-2019 15:11:29 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcroco3 libcurl3 build 22-May-2019 15:11:29 libdatrie1 libdpkg-perl libencode-locale-perl libfile-listing-perl build 22-May-2019 15:11:29 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-5-dev build 22-May-2019 15:11:29 libgdbm3 libgfortran-5-dev libgfortran3 libglib2.0-0 libgmp10 libgnutls30 build 22-May-2019 15:11:29 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b build 22-May-2019 15:11:29 libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 build 22-May-2019 15:11:29 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl build 22-May-2019 15:11:29 libhttp-cookies-perl libhttp-date-perl libhttp-message-perl build 22-May-2019 15:11:29 libhttp-negotiate-perl libhx509-5-heimdal libice6 libicu-dev libicu55 build 22-May-2019 15:11:29 libidn11 libio-html-perl libio-socket-ssl-perl libisl15 libitm1 libjbig0 build 22-May-2019 15:11:29 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev build 22-May-2019 15:11:29 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 build 22-May-2019 15:11:29 liblapack-dev liblapack3 libldap-2.4-2 liblsan0 liblwp-mediatypes-perl build 22-May-2019 15:11:29 liblwp-protocol-https-perl liblzma-dev libmagic1 libmpc3 libmpfr4 libmpx0 build 22-May-2019 15:11:29 libncurses5-dev libnet-http-perl libnet-ssleay-perl libnettle6 libp11-kit0 build 22-May-2019 15:11:29 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils build 22-May-2019 15:11:29 libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.22 build 22-May-2019 15:11:29 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libquadmath0 build 22-May-2019 15:11:29 libreadline-dev libreadline6-dev libroken18-heimdal librtmp1 libsasl2-2 build 22-May-2019 15:11:29 libsasl2-modules-db libsigsegv2 libsm6 libstdc++-5-dev libtasn1-6 libtcl8.6 build 22-May-2019 15:11:29 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 build 22-May-2019 15:11:29 libtsan0 libubsan0 libunistring0 liburi-perl libwind0-heimdal libwww-perl build 22-May-2019 15:11:29 libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 build 22-May-2019 15:11:29 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 build 22-May-2019 15:11:29 libxmuu1 libxrender1 libxss1 libxt6 linux-libc-dev m4 make man-db netbase build 22-May-2019 15:11:29 patch perl perl-modules-5.22 pkg-config po-debconf python-pkg-resources build 22-May-2019 15:11:29 python-scour python-six tzdata ucf unzip x11-common xauth xdg-utils xz-utils build 22-May-2019 15:11:29 zip zlib1g-dev build 22-May-2019 15:11:29 Suggested packages: build 22-May-2019 15:11:29 autoconf-archive gnu-standards autoconf-doc libtool binutils-doc wamerican build 22-May-2019 15:11:29 | wordlist whois vacation bzip2-doc devscripts cpp-doc gcc-5-locales dh-make build 22-May-2019 15:11:29 debian-keyring g++-multilib g++-5-multilib gcc-5-doc libstdc++6-5-dbg build 22-May-2019 15:11:29 gcc-multilib manpages-dev flex bison gdb gcc-doc gcc-5-multilib libgcc1-dbg build 22-May-2019 15:11:29 libgomp1-dbg libitm1-dbg libatomic1-dbg libasan2-dbg liblsan0-dbg build 22-May-2019 15:11:29 libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx0-dbg libquadmath0-dbg build 22-May-2019 15:11:29 gettext-doc autopoint gfortran-multilib gfortran-doc gfortran-5-multilib build 22-May-2019 15:11:29 gfortran-5-doc libgfortran3-dbg groff liblapack-doc-man liblapack-doc build 22-May-2019 15:11:29 glibc-doc gnutls-bin krb5-doc krb5-user libdata-dump-perl icu-doc build 22-May-2019 15:11:29 libcrypt-ssleay-perl liblzma-doc ncurses-doc readline-doc libstdc++-5-doc build 22-May-2019 15:11:29 tcl8.6 tk8.6 libauthen-ntlm-perl make-doc less www-browser ed diffutils-doc build 22-May-2019 15:11:29 perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl build 22-May-2019 15:11:29 libmail-box-perl python-setuptools python-rsvg python-cairo ess r-doc-info build 22-May-2019 15:11:29 | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base build 22-May-2019 15:11:29 texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra build 22-May-2019 15:11:29 texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo build 22-May-2019 15:11:29 gvfs-bin build 22-May-2019 15:11:29 Recommended packages: build 22-May-2019 15:11:29 fakeroot libalgorithm-merge-perl curl | wget | lynx-cur libasprintf-dev build 22-May-2019 15:11:29 libgettextpo-dev bzip2-doc manpages manpages-dev libfile-fcntllock-perl build 22-May-2019 15:11:29 libglib2.0-data shared-mime-info xdg-user-dirs libhtml-format-perl build 22-May-2019 15:11:29 krb5-locales libsasl2-modules libhtml-form-perl libhttp-daemon-perl build 22-May-2019 15:11:29 libmailtools-perl xml-core ifupdown rename libmail-sendmail-perl build 22-May-2019 15:11:29 r-recommended r-doc-html libfile-mimeinfo-perl libnet-dbus-perl build 22-May-2019 15:11:29 libx11-protocol-perl x11-utils x11-xserver-utils build 22-May-2019 15:11:29 The following NEW packages will be installed: build 22-May-2019 15:11:29 autoconf automake autotools-dev binutils bsdmainutils build-essential bzip2 build 22-May-2019 15:11:29 cdbs cpp cpp-5 debhelper dh-strip-nondeterminism dh-translations dpkg-dev build 22-May-2019 15:11:29 file fontconfig fontconfig-config fonts-dejavu-core g++ g++-5 gcc gcc-5 build 22-May-2019 15:11:29 gettext gettext-base gfortran gfortran-5 groff-base icu-devtools intltool build 22-May-2019 15:11:29 intltool-debian libarchive-zip-perl libasan2 libasn1-8-heimdal build 22-May-2019 15:11:29 libasprintf0v5 libatomic1 libblas-common libblas-dev libblas3 libbz2-dev build 22-May-2019 15:11:29 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcroco3 libcurl3 build 22-May-2019 15:11:29 libdatrie1 libdpkg-perl libencode-locale-perl libfile-listing-perl build 22-May-2019 15:11:29 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-5-dev build 22-May-2019 15:11:29 libgdbm3 libgfortran-5-dev libgfortran3 libglib2.0-0 libgmp10 libgnutls30 build 22-May-2019 15:11:29 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b build 22-May-2019 15:11:29 libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 build 22-May-2019 15:11:29 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl build 22-May-2019 15:11:29 libhttp-cookies-perl libhttp-date-perl libhttp-message-perl build 22-May-2019 15:11:29 libhttp-negotiate-perl libhx509-5-heimdal libice6 libicu-dev libicu55 build 22-May-2019 15:11:29 libidn11 libio-html-perl libio-socket-ssl-perl libisl15 libitm1 libjbig0 build 22-May-2019 15:11:29 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev build 22-May-2019 15:11:29 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 build 22-May-2019 15:11:29 liblapack-dev liblapack3 libldap-2.4-2 liblsan0 liblwp-mediatypes-perl build 22-May-2019 15:11:29 liblwp-protocol-https-perl liblzma-dev libmagic1 libmpc3 libmpfr4 libmpx0 build 22-May-2019 15:11:29 libncurses5-dev libnet-http-perl libnet-ssleay-perl libnettle6 libp11-kit0 build 22-May-2019 15:11:29 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils build 22-May-2019 15:11:29 libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.22 build 22-May-2019 15:11:29 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libquadmath0 build 22-May-2019 15:11:29 libreadline-dev libreadline6-dev libroken18-heimdal librtmp1 libsasl2-2 build 22-May-2019 15:11:29 libsasl2-modules-db libsigsegv2 libsm6 libstdc++-5-dev libtasn1-6 libtcl8.6 build 22-May-2019 15:11:29 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 build 22-May-2019 15:11:29 libtsan0 libubsan0 libunistring0 liburi-perl libwind0-heimdal libwww-perl build 22-May-2019 15:11:29 libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 build 22-May-2019 15:11:29 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 build 22-May-2019 15:11:29 libxmuu1 libxrender1 libxss1 libxt6 linux-libc-dev m4 make man-db netbase build 22-May-2019 15:11:29 patch perl perl-modules-5.22 pkg-config po-debconf python-pkg-resources build 22-May-2019 15:11:29 python-scour python-six r-base-core r-base-dev tzdata ucf unzip x11-common build 22-May-2019 15:11:29 xauth xdg-utils xz-utils zip zlib1g-dev build 22-May-2019 15:11:29 0 upgraded, 190 newly installed, 0 to remove and 2 not upgraded. build 22-May-2019 15:11:29 Need to get 116 MB of archives. build 22-May-2019 15:11:29 After this operation, 416 MB of additional disk space will be used. build 22-May-2019 15:11:29 Get:1 http://cran.rstudio.com/bin/linux/ubuntu xenial/ r-base-core 3.4.4-1xenial0 [23.2 MB] build 22-May-2019 15:11:29 Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgdbm3 amd64 1.8.3-13.1 [16.9 kB] build 22-May-2019 15:11:29 Get:3 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libglib2.0-0 amd64 2.48.2-0ubuntu4.1 [1120 kB] build 22-May-2019 15:11:29 Get:4 http://cran.rstudio.com/bin/linux/ubuntu xenial/ r-base-dev 3.4.4-1xenial0 [4416 B] build 22-May-2019 15:11:30 Get:5 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] build 22-May-2019 15:11:30 Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxdmcp6 amd64 1:1.1.2-1.1 [11.0 kB] build 22-May-2019 15:11:30 Get:7 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb1 amd64 1.11.1-1ubuntu1 [40.0 kB] build 22-May-2019 15:11:30 Get:8 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-data all 2:1.6.3-1ubuntu2.1 [113 kB] build 22-May-2019 15:11:30 Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-6 amd64 2:1.6.3-1ubuntu2.1 [570 kB] build 22-May-2019 15:11:30 Get:10 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB] build 22-May-2019 15:11:30 Get:11 http://archive.ubuntu.com/ubuntu xenial/main amd64 groff-base amd64 1.22.3-7 [1151 kB] build 22-May-2019 15:11:30 Get:12 http://archive.ubuntu.com/ubuntu xenial/main amd64 bsdmainutils amd64 9.0.6ubuntu3 [174 kB] build 22-May-2019 15:11:30 Get:13 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpipeline1 amd64 1.4.1-2 [24.6 kB] build 22-May-2019 15:11:30 Get:14 http://archive.ubuntu.com/ubuntu xenial/main amd64 man-db amd64 2.7.5-1 [854 kB] build 22-May-2019 15:11:30 Get:15 http://archive.ubuntu.com/ubuntu xenial/main amd64 fonts-dejavu-core all 2.35-1 [1039 kB] build 22-May-2019 15:11:30 Get:16 http://archive.ubuntu.com/ubuntu xenial/main amd64 ucf all 3.0036 [52.9 kB] build 22-May-2019 15:11:30 Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 fontconfig-config all 2.11.94-0ubuntu1.1 [49.9 kB] build 22-May-2019 15:11:30 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpng12-0 amd64 1.2.54-1ubuntu1.1 [116 kB] build 22-May-2019 15:11:30 Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfreetype6 amd64 2.6.1-0.1ubuntu2.3 [316 kB] build 22-May-2019 15:11:30 Get:20 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfontconfig1 amd64 2.11.94-0ubuntu1.1 [131 kB] build 22-May-2019 15:11:30 Get:21 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 fontconfig amd64 2.11.94-0ubuntu1.1 [178 kB] build 22-May-2019 15:11:30 Get:22 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 x11-common all 1:7.7+13ubuntu3.1 [22.9 kB] build 22-May-2019 15:11:30 Get:23 http://archive.ubuntu.com/ubuntu xenial/main amd64 libice6 amd64 2:1.0.9-1 [39.2 kB] build 22-May-2019 15:11:30 Get:24 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libjpeg-turbo8 amd64 1.4.2-0ubuntu3.1 [111 kB] build 22-May-2019 15:11:30 Get:25 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpcrecpp0v5 amd64 2:8.38-3.1 [15.2 kB] build 22-May-2019 15:11:30 Get:26 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsigsegv2 amd64 2.10-4 [14.1 kB] build 22-May-2019 15:11:30 Get:27 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB] build 22-May-2019 15:11:30 Get:28 http://archive.ubuntu.com/ubuntu xenial/main amd64 libunistring0 amd64 0.9.3-5.2ubuntu1 [279 kB] build 22-May-2019 15:11:30 Get:29 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxrender1 amd64 1:0.9.9-0ubuntu1 [18.5 kB] build 22-May-2019 15:11:30 Get:30 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxft2 amd64 2.3.2-1 [36.1 kB] build 22-May-2019 15:11:30 Get:31 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxss1 amd64 1:1.2.2-1 [8582 B] build 22-May-2019 15:11:30 Get:32 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 perl-modules-5.22 all 5.22.1-9ubuntu0.6 [2629 kB] build 22-May-2019 15:11:30 Get:33 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libperl5.22 amd64 5.22.1-9ubuntu0.6 [3405 kB] build 22-May-2019 15:11:30 Get:34 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 perl amd64 5.22.1-9ubuntu0.6 [237 kB] build 22-May-2019 15:11:30 Get:35 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjbig0 amd64 2.1-3.1 [26.6 kB] build 22-May-2019 15:11:30 Get:36 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgmp10 amd64 2:6.1.0+dfsg-2 [240 kB] build 22-May-2019 15:11:30 Get:37 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpfr4 amd64 3.1.4-1 [191 kB] build 22-May-2019 15:11:30 Get:38 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpc3 amd64 1.0.3-1 [39.7 kB] build 22-May-2019 15:11:30 Get:39 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 tzdata all 2019a-0ubuntu0.16.04 [167 kB] build 22-May-2019 15:11:30 Get:40 http://archive.ubuntu.com/ubuntu xenial/main amd64 bzip2 amd64 1.0.6-8 [32.7 kB] build 22-May-2019 15:11:30 Get:41 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmagic1 amd64 1:5.25-2ubuntu1.2 [216 kB] build 22-May-2019 15:11:31 Get:42 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 file amd64 1:5.25-2ubuntu1.2 [21.2 kB] build 22-May-2019 15:11:31 Get:43 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libnettle6 amd64 3.2-1ubuntu0.16.04.1 [93.5 kB] build 22-May-2019 15:11:31 Get:44 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhogweed4 amd64 3.2-1ubuntu0.16.04.1 [136 kB] build 22-May-2019 15:11:31 Get:45 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libidn11 amd64 1.32-3ubuntu1.2 [46.5 kB] build 22-May-2019 15:11:31 Get:46 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libp11-kit0 amd64 0.23.2-5~ubuntu16.04.1 [105 kB] build 22-May-2019 15:11:31 Get:47 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtasn1-6 amd64 4.7-3ubuntu0.16.04.3 [43.5 kB] build 22-May-2019 15:11:31 Get:48 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgnutls30 amd64 3.4.10-4ubuntu1.4 [548 kB] build 22-May-2019 15:11:31 Get:49 http://archive.ubuntu.com/ubuntu xenial/main amd64 netbase all 5.3 [12.9 kB] build 22-May-2019 15:11:31 Get:50 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasprintf0v5 amd64 0.19.7-2ubuntu3.1 [6568 B] build 22-May-2019 15:11:31 Get:51 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gettext-base amd64 0.19.7-2ubuntu3.1 [48.0 kB] build 22-May-2019 15:11:31 Get:52 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libroken18-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [41.4 kB] build 22-May-2019 15:11:31 Get:53 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasn1-8-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [174 kB] build 22-May-2019 15:11:31 Get:54 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5support0 amd64 1.13.2+dfsg-5ubuntu2.1 [31.2 kB] build 22-May-2019 15:11:31 Get:55 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libk5crypto3 amd64 1.13.2+dfsg-5ubuntu2.1 [81.3 kB] build 22-May-2019 15:11:31 Get:56 http://archive.ubuntu.com/ubuntu xenial/main amd64 libkeyutils1 amd64 1.5.9-8ubuntu1 [9904 B] build 22-May-2019 15:11:31 Get:57 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5-3 amd64 1.13.2+dfsg-5ubuntu2.1 [273 kB] build 22-May-2019 15:11:31 Get:58 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgssapi-krb5-2 amd64 1.13.2+dfsg-5ubuntu2.1 [120 kB] build 22-May-2019 15:11:31 Get:59 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhcrypto4-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [85.0 kB] build 22-May-2019 15:11:31 Get:60 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libheimbase1-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [29.3 kB] build 22-May-2019 15:11:31 Get:61 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libwind0-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [47.8 kB] build 22-May-2019 15:11:31 Get:62 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhx509-5-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [107 kB] build 22-May-2019 15:11:31 Get:63 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5-26-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [202 kB] build 22-May-2019 15:11:31 Get:64 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libheimntlm0-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [15.1 kB] build 22-May-2019 15:11:31 Get:65 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgssapi3-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [96.1 kB] build 22-May-2019 15:11:31 Get:66 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libicu55 amd64 55.1-7ubuntu0.4 [7646 kB] build 22-May-2019 15:11:31 Get:67 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libsasl2-modules-db amd64 2.1.26.dfsg1-14ubuntu0.1 [14.5 kB] build 22-May-2019 15:11:31 Get:68 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libsasl2-2 amd64 2.1.26.dfsg1-14ubuntu0.1 [48.6 kB] build 22-May-2019 15:11:31 Get:69 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libldap-2.4-2 amd64 2.4.42+dfsg-2ubuntu3.5 [161 kB] build 22-May-2019 15:11:31 Get:70 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d-1ubuntu0.1 [54.4 kB] build 22-May-2019 15:11:31 Get:71 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libxml2 amd64 2.9.3+dfsg1-1ubuntu0.6 [697 kB] build 22-May-2019 15:11:31 Get:72 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxmuu1 amd64 2:1.1.2-2 [9674 B] build 22-May-2019 15:11:31 Get:73 http://archive.ubuntu.com/ubuntu xenial/main amd64 xauth amd64 1:1.0.9-1ubuntu2 [22.7 kB] build 22-May-2019 15:11:31 Get:74 http://archive.ubuntu.com/ubuntu xenial/main amd64 m4 amd64 1.4.17-5 [195 kB] build 22-May-2019 15:11:31 Get:75 http://archive.ubuntu.com/ubuntu xenial/main amd64 autoconf all 2.69-9 [321 kB] build 22-May-2019 15:11:31 Get:76 http://archive.ubuntu.com/ubuntu xenial/main amd64 autotools-dev all 20150820.1 [39.8 kB] build 22-May-2019 15:11:31 Get:77 http://archive.ubuntu.com/ubuntu xenial/main amd64 automake all 1:1.15-4ubuntu1 [510 kB] build 22-May-2019 15:11:31 Get:78 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 binutils amd64 2.26.1-1ubuntu1~16.04.8 [2312 kB] build 22-May-2019 15:11:31 Get:79 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc-dev-bin amd64 2.23-0ubuntu11 [68.5 kB] build 22-May-2019 15:11:31 Get:80 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 linux-libc-dev amd64 4.4.0-148.174 [867 kB] build 22-May-2019 15:11:31 Get:81 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc6-dev amd64 2.23-0ubuntu11 [2086 kB] build 22-May-2019 15:11:31 Get:82 http://archive.ubuntu.com/ubuntu xenial/main amd64 libisl15 amd64 0.16.1-1 [524 kB] build 22-May-2019 15:11:31 Get:83 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 cpp-5 amd64 5.4.0-6ubuntu1~16.04.11 [7660 kB] build 22-May-2019 15:11:32 Get:84 http://archive.ubuntu.com/ubuntu xenial/main amd64 cpp amd64 4:5.3.1-1ubuntu1 [27.7 kB] build 22-May-2019 15:11:32 Get:85 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcc1-0 amd64 5.4.0-6ubuntu1~16.04.11 [38.8 kB] build 22-May-2019 15:11:32 Get:86 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgomp1 amd64 5.4.0-6ubuntu1~16.04.11 [55.0 kB] build 22-May-2019 15:11:32 Get:87 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libitm1 amd64 5.4.0-6ubuntu1~16.04.11 [27.4 kB] build 22-May-2019 15:11:32 Get:88 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libatomic1 amd64 5.4.0-6ubuntu1~16.04.11 [8896 B] build 22-May-2019 15:11:32 Get:89 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasan2 amd64 5.4.0-6ubuntu1~16.04.11 [264 kB] build 22-May-2019 15:11:32 Get:90 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 liblsan0 amd64 5.4.0-6ubuntu1~16.04.11 [105 kB] build 22-May-2019 15:11:32 Get:91 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtsan0 amd64 5.4.0-6ubuntu1~16.04.11 [244 kB] build 22-May-2019 15:11:32 Get:92 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libubsan0 amd64 5.4.0-6ubuntu1~16.04.11 [95.4 kB] build 22-May-2019 15:11:32 Get:93 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcilkrts5 amd64 5.4.0-6ubuntu1~16.04.11 [40.1 kB] build 22-May-2019 15:11:32 Get:94 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmpx0 amd64 5.4.0-6ubuntu1~16.04.11 [9748 B] build 22-May-2019 15:11:32 Get:95 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libquadmath0 amd64 5.4.0-6ubuntu1~16.04.11 [131 kB] build 22-May-2019 15:11:32 Get:96 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgcc-5-dev amd64 5.4.0-6ubuntu1~16.04.11 [2229 kB] build 22-May-2019 15:11:32 Get:97 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gcc-5 amd64 5.4.0-6ubuntu1~16.04.11 [8417 kB] build 22-May-2019 15:11:32 Get:98 http://archive.ubuntu.com/ubuntu xenial/main amd64 gcc amd64 4:5.3.1-1ubuntu1 [5244 B] build 22-May-2019 15:11:32 Get:99 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libstdc++-5-dev amd64 5.4.0-6ubuntu1~16.04.11 [1426 kB] build 22-May-2019 15:11:32 Get:100 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 g++-5 amd64 5.4.0-6ubuntu1~16.04.11 [8310 kB] build 22-May-2019 15:11:33 Get:101 http://archive.ubuntu.com/ubuntu xenial/main amd64 g++ amd64 4:5.3.1-1ubuntu1 [1504 B] build 22-May-2019 15:11:33 Get:102 http://archive.ubuntu.com/ubuntu xenial/main amd64 make amd64 4.1-6 [151 kB] build 22-May-2019 15:11:33 Get:103 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdpkg-perl all 1.18.4ubuntu1.5 [195 kB] build 22-May-2019 15:11:33 Get:104 http://archive.ubuntu.com/ubuntu xenial/main amd64 xz-utils amd64 5.1.1alpha+20120614-2ubuntu2 [78.8 kB] build 22-May-2019 15:11:33 Get:105 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 patch amd64 2.7.5-1ubuntu0.16.04.1 [90.5 kB] build 22-May-2019 15:11:33 Get:106 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 dpkg-dev all 1.18.4ubuntu1.5 [584 kB] build 22-May-2019 15:11:33 Get:107 http://archive.ubuntu.com/ubuntu xenial/main amd64 build-essential amd64 12.1ubuntu2 [4758 B] build 22-May-2019 15:11:33 Get:108 http://archive.ubuntu.com/ubuntu xenial/main amd64 libcroco3 amd64 0.6.11-1 [81.6 kB] build 22-May-2019 15:11:33 Get:109 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gettext amd64 0.19.7-2ubuntu3.1 [1082 kB] build 22-May-2019 15:11:34 Get:110 http://archive.ubuntu.com/ubuntu xenial/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] build 22-May-2019 15:11:34 Get:111 http://archive.ubuntu.com/ubuntu xenial/main amd64 po-debconf all 1.0.19 [234 kB] build 22-May-2019 15:11:34 Get:112 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libarchive-zip-perl all 1.56-2ubuntu0.1 [84.7 kB] build 22-May-2019 15:11:34 Get:113 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfile-stripnondeterminism-perl all 0.015-1 [10.3 kB] build 22-May-2019 15:11:34 Get:114 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] build 22-May-2019 15:11:34 Get:115 http://archive.ubuntu.com/ubuntu xenial/main amd64 dh-strip-nondeterminism all 0.015-1 [4864 B] build 22-May-2019 15:11:34 Get:116 http://archive.ubuntu.com/ubuntu xenial/main amd64 debhelper all 9.20160115ubuntu3 [739 kB] build 22-May-2019 15:11:34 Get:117 http://archive.ubuntu.com/ubuntu xenial/main amd64 liburi-perl all 1.71-1 [76.9 kB] build 22-May-2019 15:11:34 Get:118 http://archive.ubuntu.com/ubuntu xenial/main amd64 libencode-locale-perl all 1.05-1 [12.3 kB] build 22-May-2019 15:11:34 Get:119 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-date-perl all 6.02-1 [10.4 kB] build 22-May-2019 15:11:34 Get:120 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfile-listing-perl all 6.04-1 [9774 B] build 22-May-2019 15:11:34 Get:121 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhtml-tagset-perl all 3.20-2 [13.5 kB] build 22-May-2019 15:11:34 Get:122 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhtml-parser-perl amd64 3.72-1 [86.1 kB] build 22-May-2019 15:11:34 Get:123 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhtml-tree-perl all 5.03-2 [197 kB] build 22-May-2019 15:11:34 Get:124 http://archive.ubuntu.com/ubuntu xenial/main amd64 libio-html-perl all 1.001-1 [14.9 kB] build 22-May-2019 15:11:34 Get:125 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblwp-mediatypes-perl all 6.02-1 [21.7 kB] build 22-May-2019 15:11:34 Get:126 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-message-perl all 6.11-1 [74.3 kB] build 22-May-2019 15:11:34 Get:127 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-cookies-perl all 6.01-1 [17.2 kB] build 22-May-2019 15:11:34 Get:128 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-negotiate-perl all 6.00-2 [13.4 kB] build 22-May-2019 15:11:34 Get:129 http://archive.ubuntu.com/ubuntu xenial/main amd64 libnet-ssleay-perl amd64 1.72-1build1 [259 kB] build 22-May-2019 15:11:34 Get:130 http://archive.ubuntu.com/ubuntu xenial/main amd64 libio-socket-ssl-perl all 2.024-1 [159 kB] build 22-May-2019 15:11:34 Get:131 http://archive.ubuntu.com/ubuntu xenial/main amd64 libnet-http-perl all 6.09-1 [24.0 kB] build 22-May-2019 15:11:34 Get:132 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblwp-protocol-https-perl all 6.06-2 [8682 B] build 22-May-2019 15:11:34 Get:133 http://archive.ubuntu.com/ubuntu xenial/main amd64 libwww-robotrules-perl all 6.01-1 [14.1 kB] build 22-May-2019 15:11:34 Get:134 http://archive.ubuntu.com/ubuntu xenial/main amd64 libwww-perl all 6.15-1 [146 kB] build 22-May-2019 15:11:34 Get:135 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxml-parser-perl amd64 2.44-1build1 [200 kB] build 22-May-2019 15:11:34 Get:136 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 intltool all 0.51.0-2ubuntu1.16.04.1 [45.0 kB] build 22-May-2019 15:11:34 Get:137 http://archive.ubuntu.com/ubuntu xenial/main amd64 dh-translations all 129 [22.1 kB] build 22-May-2019 15:11:34 Get:138 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-six all 1.10.0-3 [10.9 kB] build 22-May-2019 15:11:34 Get:139 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-pkg-resources all 20.7.0-1 [108 kB] build 22-May-2019 15:11:34 Get:140 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-scour all 0.32-1 [42.7 kB] build 22-May-2019 15:11:34 Get:141 http://archive.ubuntu.com/ubuntu xenial/main amd64 cdbs all 0.4.130ubuntu2 [42.8 kB] build 22-May-2019 15:11:34 Get:142 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran3 amd64 5.4.0-6ubuntu1~16.04.11 [260 kB] build 22-May-2019 15:11:34 Get:143 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran-5-dev amd64 5.4.0-6ubuntu1~16.04.11 [291 kB] build 22-May-2019 15:11:34 Get:144 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gfortran-5 amd64 5.4.0-6ubuntu1~16.04.11 [8034 kB] build 22-May-2019 15:11:34 Get:145 http://archive.ubuntu.com/ubuntu xenial/main amd64 gfortran amd64 4:5.3.1-1ubuntu1 [1288 B] build 22-May-2019 15:11:34 Get:146 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 icu-devtools amd64 55.1-7ubuntu0.4 [166 kB] build 22-May-2019 15:11:34 Get:147 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas-common amd64 3.6.0-2ubuntu2 [5342 B] build 22-May-2019 15:11:34 Get:148 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas3 amd64 3.6.0-2ubuntu2 [147 kB] build 22-May-2019 15:11:34 Get:149 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas-dev amd64 3.6.0-2ubuntu2 [153 kB] build 22-May-2019 15:11:34 Get:150 http://archive.ubuntu.com/ubuntu xenial/main amd64 libbz2-dev amd64 1.0.6-8 [29.1 kB] build 22-May-2019 15:11:34 Get:151 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpixman-1-0 amd64 0.33.6-1 [231 kB] build 22-May-2019 15:11:34 Get:152 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-render0 amd64 1.11.1-1ubuntu1 [11.4 kB] build 22-May-2019 15:11:34 Get:153 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-shm0 amd64 1.11.1-1ubuntu1 [5588 B] build 22-May-2019 15:11:34 Get:154 http://archive.ubuntu.com/ubuntu xenial/main amd64 libcairo2 amd64 1.14.6-1 [555 kB] build 22-May-2019 15:11:35 Get:155 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcurl3 amd64 7.47.0-1ubuntu2.13 [186 kB] build 22-May-2019 15:11:35 Get:156 http://archive.ubuntu.com/ubuntu xenial/main amd64 libdatrie1 amd64 0.2.10-2 [17.3 kB] build 22-May-2019 15:11:35 Get:157 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgraphite2-3 amd64 1.3.10-0ubuntu0.16.04.1 [71.7 kB] build 22-May-2019 15:11:35 Get:158 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libharfbuzz0b amd64 1.0.1-1ubuntu0.1 [140 kB] build 22-May-2019 15:11:35 Get:159 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libicu-dev amd64 55.1-7ubuntu0.4 [8566 kB] build 22-May-2019 15:11:35 Get:160 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libjpeg-turbo8-dev amd64 1.4.2-0ubuntu3.1 [254 kB] build 22-May-2019 15:11:35 Get:161 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] build 22-May-2019 15:11:35 Get:162 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1552 B] build 22-May-2019 15:11:35 Get:163 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B] build 22-May-2019 15:11:35 Get:164 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblapack3 amd64 3.6.0-2ubuntu2 [1938 kB] build 22-May-2019 15:11:35 Get:165 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblapack-dev amd64 3.6.0-2ubuntu2 [1948 kB] build 22-May-2019 15:11:35 Get:166 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtinfo-dev amd64 6.0+20160213-1ubuntu1 [77.4 kB] build 22-May-2019 15:11:35 Get:167 http://archive.ubuntu.com/ubuntu xenial/main amd64 libncurses5-dev amd64 6.0+20160213-1ubuntu1 [175 kB] build 22-May-2019 15:11:35 Get:168 http://archive.ubuntu.com/ubuntu xenial/main amd64 libthai-data all 0.1.24-2 [131 kB] build 22-May-2019 15:11:35 Get:169 http://archive.ubuntu.com/ubuntu xenial/main amd64 libthai0 amd64 0.1.24-2 [17.3 kB] build 22-May-2019 15:11:35 Get:170 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpango-1.0-0 amd64 1.38.1-1 [148 kB] build 22-May-2019 15:11:35 Get:171 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[168 kB] build 22-May-2019 15:11:35 Get:179 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpng12-dev amd64 1.2.54-1ubuntu1.1 [183 kB] build 22-May-2019 15:11:35 Get:180 http://archive.ubuntu.com/ubuntu xenial/main amd64 libreadline6-dev amd64 6.3-8ubuntu2 [124 kB] build 22-May-2019 15:11:35 Get:181 http://archive.ubuntu.com/ubuntu xenial/main amd64 libreadline-dev amd64 6.3-8ubuntu2 [992 B] build 22-May-2019 15:11:35 Get:182 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtcl8.6 amd64 8.6.5+dfsg-2 [875 kB] build 22-May-2019 15:11:35 Get:183 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtiff5 amd64 4.0.6-1ubuntu0.6 [149 kB] build 22-May-2019 15:11:35 Get:184 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtk8.6 amd64 8.6.5-1 [693 kB] build 22-May-2019 15:11:35 Get:185 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxt6 amd64 1:1.1.5-0ubuntu1 [160 kB] build 22-May-2019 15:11:35 Get:186 http://archive.ubuntu.com/ubuntu xenial/main amd64 pkg-config amd64 0.29.1-0ubuntu1 [45.0 kB] build 22-May-2019 15:11:35 Get:187 http://archive.ubuntu.com/ubuntu xenial/main amd64 zip amd64 3.0-11 [158 kB] build 22-May-2019 15:11:35 Get:188 http://archive.ubuntu.com/ubuntu xenial/main amd64 unzip amd64 6.0-20ubuntu1 [158 kB] build 22-May-2019 15:11:35 Get:189 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 xdg-utils all 1.1.1-1ubuntu1.16.04.3 [59.6 kB] build 22-May-2019 15:11:35 Get:190 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblzma-dev amd64 5.1.1alpha+20120614-2ubuntu2 [137 kB] build 22-May-2019 15:11:36 debconf: delaying package configuration, since apt-utils is not installed build 22-May-2019 15:11:36 Fetched 116 MB in 6s (17.8 MB/s) build 22-May-2019 15:11:37 Selecting previously unselected package libgdbm3:amd64. build 22-May-2019 15:11:37 (Reading database ... build 22-May-2019 15:11:37 (Reading database ... 5% build 22-May-2019 15:11:37 (Reading database ... 10% build 22-May-2019 15:11:37 (Reading 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currently installed.) build 22-May-2019 15:11:37 Preparing to unpack .../libgdbm3_1.8.3-13.1_amd64.deb ... build 22-May-2019 15:11:37 Unpacking libgdbm3:amd64 (1.8.3-13.1) ... build 22-May-2019 15:11:37 Selecting previously unselected package libglib2.0-0:amd64. build 22-May-2019 15:11:37 Preparing to unpack .../libglib2.0-0_2.48.2-0ubuntu4.1_amd64.deb ... build 22-May-2019 15:11:37 Unpacking libglib2.0-0:amd64 (2.48.2-0ubuntu4.1) ... build 22-May-2019 15:11:38 Selecting previously unselected package libxau6:amd64. build 22-May-2019 15:11:38 Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... build 22-May-2019 15:11:39 Unpacking libxau6:amd64 (1:1.0.8-1) ... build 22-May-2019 15:11:39 Selecting previously unselected package libxdmcp6:amd64. build 22-May-2019 15:11:39 Preparing to unpack .../libxdmcp6_1%3a1.1.2-1.1_amd64.deb ... build 22-May-2019 15:11:39 Unpacking libxdmcp6:amd64 (1:1.1.2-1.1) ... build 22-May-2019 15:11:40 Selecting previously unselected package libxcb1:amd64. build 22-May-2019 15:11:40 Preparing to unpack .../libxcb1_1.11.1-1ubuntu1_amd64.deb ... build 22-May-2019 15:11:40 Unpacking libxcb1:amd64 (1.11.1-1ubuntu1) ... build 22-May-2019 15:11:40 Selecting previously unselected package libx11-data. build 22-May-2019 15:11:40 Preparing to unpack .../libx11-data_2%3a1.6.3-1ubuntu2.1_all.deb ... build 22-May-2019 15:11:40 Unpacking libx11-data (2:1.6.3-1ubuntu2.1) ... build 22-May-2019 15:11:41 Selecting previously unselected package libx11-6:amd64. build 22-May-2019 15:11:41 Preparing to unpack .../libx11-6_2%3a1.6.3-1ubuntu2.1_amd64.deb ... build 22-May-2019 15:11:41 Unpacking libx11-6:amd64 (2:1.6.3-1ubuntu2.1) ... build 22-May-2019 15:11:42 Selecting previously unselected package libxext6:amd64. build 22-May-2019 15:11:42 Preparing to unpack .../libxext6_2%3a1.3.3-1_amd64.deb ... build 22-May-2019 15:11:42 Unpacking libxext6:amd64 (2:1.3.3-1) ... build 22-May-2019 15:11:43 Selecting previously unselected package groff-base. build 22-May-2019 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libjpeg-dev:amd64. build 22-May-2019 15:13:25 Preparing to unpack .../libjpeg-dev_8c-2ubuntu8_amd64.deb ... build 22-May-2019 15:13:25 Unpacking libjpeg-dev:amd64 (8c-2ubuntu8) ... build 22-May-2019 15:13:25 Selecting previously unselected package liblapack3. build 22-May-2019 15:13:25 Preparing to unpack .../liblapack3_3.6.0-2ubuntu2_amd64.deb ... build 22-May-2019 15:13:25 Unpacking liblapack3 (3.6.0-2ubuntu2) ... build 22-May-2019 15:13:26 Selecting previously unselected package liblapack-dev. build 22-May-2019 15:13:26 Preparing to unpack .../liblapack-dev_3.6.0-2ubuntu2_amd64.deb ... build 22-May-2019 15:13:26 Unpacking liblapack-dev (3.6.0-2ubuntu2) ... build 22-May-2019 15:13:27 Selecting previously unselected package libtinfo-dev:amd64. build 22-May-2019 15:13:27 Preparing to unpack .../libtinfo-dev_6.0+20160213-1ubuntu1_amd64.deb ... build 22-May-2019 15:13:27 Unpacking libtinfo-dev:amd64 (6.0+20160213-1ubuntu1) ... build 22-May-2019 15:13:28 Selecting previously unselected package libncurses5-dev:amd64. build 22-May-2019 15:13:28 Preparing to unpack .../libncurses5-dev_6.0+20160213-1ubuntu1_amd64.deb ... build 22-May-2019 15:13:28 Unpacking libncurses5-dev:amd64 (6.0+20160213-1ubuntu1) ... build 22-May-2019 15:13:28 Selecting previously unselected package libthai-data. build 22-May-2019 15:13:28 Preparing to unpack .../libthai-data_0.1.24-2_all.deb ... build 22-May-2019 15:13:28 Unpacking libthai-data (0.1.24-2) ... build 22-May-2019 15:13:29 Selecting previously unselected package libthai0:amd64. build 22-May-2019 15:13:29 Preparing to unpack .../libthai0_0.1.24-2_amd64.deb ... build 22-May-2019 15:13:29 Unpacking libthai0:amd64 (0.1.24-2) ... build 22-May-2019 15:13:30 Selecting previously unselected package libpango-1.0-0:amd64. build 22-May-2019 15:13:30 Preparing to unpack .../libpango-1.0-0_1.38.1-1_amd64.deb ... build 22-May-2019 15:13:30 Unpacking libpango-1.0-0:amd64 (1.38.1-1) ... build 22-May-2019 15:13:30 Selecting previously unselected package libpangoft2-1.0-0:amd64. build 22-May-2019 15:13:30 Preparing to unpack .../libpangoft2-1.0-0_1.38.1-1_amd64.deb ... build 22-May-2019 15:13:30 Unpacking libpangoft2-1.0-0:amd64 (1.38.1-1) ... build 22-May-2019 15:13:31 Selecting previously unselected package libpangocairo-1.0-0:amd64. build 22-May-2019 15:13:31 Preparing to unpack .../libpangocairo-1.0-0_1.38.1-1_amd64.deb ... build 22-May-2019 15:13:31 Unpacking libpangocairo-1.0-0:amd64 (1.38.1-1) ... build 22-May-2019 15:13:31 Selecting previously unselected package libpaper1:amd64. build 22-May-2019 15:13:31 Preparing to unpack .../libpaper1_1.1.24+nmu4ubuntu1_amd64.deb ... build 22-May-2019 15:13:31 Unpacking libpaper1:amd64 (1.1.24+nmu4ubuntu1) ... build 22-May-2019 15:13:31 Selecting previously unselected package libpaper-utils. build 22-May-2019 15:13:31 Preparing to unpack .../libpaper-utils_1.1.24+nmu4ubuntu1_amd64.deb ... build 22-May-2019 15:13:31 Unpacking libpaper-utils (1.1.24+nmu4ubuntu1) ... build 22-May-2019 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build 22-May-2019 15:13:34 Selecting previously unselected package libpng12-dev:amd64. build 22-May-2019 15:13:34 Preparing to unpack .../libpng12-dev_1.2.54-1ubuntu1.1_amd64.deb ... build 22-May-2019 15:13:34 Unpacking libpng12-dev:amd64 (1.2.54-1ubuntu1.1) ... build 22-May-2019 15:13:35 Selecting previously unselected package libreadline6-dev:amd64. build 22-May-2019 15:13:35 Preparing to unpack .../libreadline6-dev_6.3-8ubuntu2_amd64.deb ... build 22-May-2019 15:13:35 Unpacking libreadline6-dev:amd64 (6.3-8ubuntu2) ... build 22-May-2019 15:13:35 Selecting previously unselected package libreadline-dev:amd64. build 22-May-2019 15:13:35 Preparing to unpack .../libreadline-dev_6.3-8ubuntu2_amd64.deb ... build 22-May-2019 15:13:35 Unpacking libreadline-dev:amd64 (6.3-8ubuntu2) ... build 22-May-2019 15:13:35 Selecting previously unselected package libtcl8.6:amd64. build 22-May-2019 15:13:35 Preparing to unpack .../libtcl8.6_8.6.5+dfsg-2_amd64.deb ... build 22-May-2019 15:13:36 Unpacking 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build 22-May-2019 15:13:40 Selecting previously unselected package zip. build 22-May-2019 15:13:40 Preparing to unpack .../archives/zip_3.0-11_amd64.deb ... build 22-May-2019 15:13:40 Unpacking zip (3.0-11) ... build 22-May-2019 15:13:41 Selecting previously unselected package unzip. build 22-May-2019 15:13:41 Preparing to unpack .../unzip_6.0-20ubuntu1_amd64.deb ... build 22-May-2019 15:13:41 Unpacking unzip (6.0-20ubuntu1) ... build 22-May-2019 15:13:41 Selecting previously unselected package xdg-utils. build 22-May-2019 15:13:41 Preparing to unpack .../xdg-utils_1.1.1-1ubuntu1.16.04.3_all.deb ... build 22-May-2019 15:13:41 Unpacking xdg-utils (1.1.1-1ubuntu1.16.04.3) ... build 22-May-2019 15:13:41 Selecting previously unselected package r-base-core. build 22-May-2019 15:13:41 Preparing to unpack .../r-base-core_3.4.4-1xenial0_amd64.deb ... build 22-May-2019 15:13:41 Unpacking r-base-core (3.4.4-1xenial0) ... build 22-May-2019 15:13:45 Selecting previously unselected package liblzma-dev:amd64. build 22-May-2019 15:13:45 Preparing to unpack .../liblzma-dev_5.1.1alpha+20120614-2ubuntu2_amd64.deb ... build 22-May-2019 15:13:45 Unpacking liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... build 22-May-2019 15:13:45 Selecting previously unselected package r-base-dev. build 22-May-2019 15:13:45 Preparing to unpack .../r-base-dev_3.4.4-1xenial0_all.deb ... build 22-May-2019 15:13:45 Unpacking r-base-dev (3.4.4-1xenial0) ... build 22-May-2019 15:13:46 Processing triggers for libc-bin (2.23-0ubuntu11) ... build 22-May-2019 15:13:46 Processing triggers for mime-support (3.59ubuntu1) ... build 22-May-2019 15:13:46 Processing triggers for systemd (229-4ubuntu21.21) ... build 22-May-2019 15:13:46 Setting up libgdbm3:amd64 (1.8.3-13.1) ... build 22-May-2019 15:13:46 Setting up libglib2.0-0:amd64 (2.48.2-0ubuntu4.1) ... build 22-May-2019 15:13:46 No schema files found: doing nothing. build 22-May-2019 15:13:47 Setting up libxau6:amd64 (1:1.0.8-1) ... build 22-May-2019 15:13:47 Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... build 22-May-2019 15:13:47 Setting up libxcb1:amd64 (1.11.1-1ubuntu1) ... build 22-May-2019 15:13:47 Setting up libx11-data (2:1.6.3-1ubuntu2.1) ... build 22-May-2019 15:13:47 Setting up libx11-6:amd64 (2:1.6.3-1ubuntu2.1) ... build 22-May-2019 15:13:47 Setting up libxext6:amd64 (2:1.3.3-1) ... build 22-May-2019 15:13:48 Setting up groff-base (1.22.3-7) ... build 22-May-2019 15:13:48 Setting up bsdmainutils (9.0.6ubuntu3) ... build 22-May-2019 15:13:48 update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode build 22-May-2019 15:13:48 update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode build 22-May-2019 15:13:48 Setting up libpipeline1:amd64 (1.4.1-2) ... build 22-May-2019 15:13:49 Setting up man-db (2.7.5-1) ... build 22-May-2019 15:13:49 debconf: unable to initialize frontend: Dialog build 22-May-2019 15:13:49 debconf: (TERM is not set, so the dialog frontend is not usable.) build 22-May-2019 15:13:49 debconf: falling back to frontend: Readline build 22-May-2019 15:13:49 Building database of manual pages ... build 22-May-2019 15:13:58 Setting up fonts-dejavu-core (2.35-1) ... build 22-May-2019 15:13:59 Setting up ucf (3.0036) ... build 22-May-2019 15:13:59 debconf: unable to initialize frontend: Dialog build 22-May-2019 15:13:59 debconf: (TERM is not set, so the dialog frontend is not usable.) build 22-May-2019 15:13:59 debconf: falling back to frontend: Readline build 22-May-2019 15:14:00 Setting up fontconfig-config (2.11.94-0ubuntu1.1) ... build 22-May-2019 15:14:02 Setting up libpng12-0:amd64 (1.2.54-1ubuntu1.1) ... build 22-May-2019 15:14:03 Setting up libfreetype6:amd64 (2.6.1-0.1ubuntu2.3) ... build 22-May-2019 15:14:03 Setting up libfontconfig1:amd64 (2.11.94-0ubuntu1.1) ... build 22-May-2019 15:14:03 Setting up fontconfig (2.11.94-0ubuntu1.1) ... build 22-May-2019 15:14:05 Regenerating fonts cache... done. build 22-May-2019 15:14:05 Setting up x11-common (1:7.7+13ubuntu3.1) ... build 22-May-2019 15:14:06 debconf: unable to initialize frontend: Dialog build 22-May-2019 15:14:06 debconf: (TERM is not set, so the dialog frontend is not usable.) build 22-May-2019 15:14:06 debconf: falling back to frontend: Readline build 22-May-2019 15:14:06 update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults build 22-May-2019 15:14:06 invoke-rc.d: could not determine current runlevel build 22-May-2019 15:14:06 invoke-rc.d: policy-rc.d denied execution of start. build 22-May-2019 15:14:07 Setting up libice6:amd64 (2:1.0.9-1) ... build 22-May-2019 15:14:07 Setting up libjpeg-turbo8:amd64 (1.4.2-0ubuntu3.1) ... build 22-May-2019 15:14:07 Setting up libpcrecpp0v5:amd64 (2:8.38-3.1) ... build 22-May-2019 15:14:07 Setting up libsigsegv2:amd64 (2.10-4) ... build 22-May-2019 15:14:07 Setting up libsm6:amd64 (2:1.2.2-1) ... build 22-May-2019 15:14:08 Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... build 22-May-2019 15:14:08 Setting up libxrender1:amd64 (1:0.9.9-0ubuntu1) ... build 22-May-2019 15:14:09 Setting up libxft2:amd64 (2.3.2-1) ... build 22-May-2019 15:14:09 Setting up libxss1:amd64 (1:1.2.2-1) ... build 22-May-2019 15:14:09 Setting up perl-modules-5.22 (5.22.1-9ubuntu0.6) ... build 22-May-2019 15:14:09 Setting up libperl5.22:amd64 (5.22.1-9ubuntu0.6) ... build 22-May-2019 15:14:09 Setting up perl (5.22.1-9ubuntu0.6) ... build 22-May-2019 15:14:10 update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode build 22-May-2019 15:14:10 Setting up libjbig0:amd64 (2.1-3.1) ... build 22-May-2019 15:14:10 Setting up libgmp10:amd64 (2:6.1.0+dfsg-2) ... build 22-May-2019 15:14:10 Setting up libmpfr4:amd64 (3.1.4-1) ... build 22-May-2019 15:14:10 Setting up libmpc3:amd64 (1.0.3-1) ... build 22-May-2019 15:14:10 Setting up tzdata (2019a-0ubuntu0.16.04) ... build 22-May-2019 15:14:11 debconf: unable to initialize frontend: Dialog build 22-May-2019 15:14:11 debconf: (TERM is not set, so the dialog frontend is not usable.) build 22-May-2019 15:14:11 debconf: falling back to frontend: Readline build 22-May-2019 15:14:11 build 22-May-2019 15:14:11 Current default time zone: 'Etc/UTC' build 22-May-2019 15:14:11 Local time is now: Wed May 22 20:14:11 UTC 2019. build 22-May-2019 15:14:11 Universal Time is now: Wed May 22 20:14:11 UTC 2019. build 22-May-2019 15:14:11 Run 'dpkg-reconfigure tzdata' if you wish to change it. build 22-May-2019 15:14:11 build 22-May-2019 15:14:11 Setting up bzip2 (1.0.6-8) ... build 22-May-2019 15:14:11 Setting up libmagic1:amd64 (1:5.25-2ubuntu1.2) ... build 22-May-2019 15:14:11 Setting up file (1:5.25-2ubuntu1.2) ... build 22-May-2019 15:14:11 Setting up libnettle6:amd64 (3.2-1ubuntu0.16.04.1) ... build 22-May-2019 15:14:12 Setting up libhogweed4:amd64 (3.2-1ubuntu0.16.04.1) ... build 22-May-2019 15:14:12 Setting up libidn11:amd64 (1.32-3ubuntu1.2) ... build 22-May-2019 15:14:12 Setting up libp11-kit0:amd64 (0.23.2-5~ubuntu16.04.1) ... build 22-May-2019 15:14:12 Setting up libtasn1-6:amd64 (4.7-3ubuntu0.16.04.3) ... build 22-May-2019 15:14:12 Setting up libgnutls30:amd64 (3.4.10-4ubuntu1.4) ... build 22-May-2019 15:14:12 Setting up netbase (5.3) ... build 22-May-2019 15:14:13 Setting up libasprintf0v5:amd64 (0.19.7-2ubuntu3.1) ... build 22-May-2019 15:14:13 Setting up gettext-base (0.19.7-2ubuntu3.1) ... build 22-May-2019 15:14:13 Setting up libroken18-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 22-May-2019 15:14:13 Setting up libasn1-8-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 22-May-2019 15:14:14 Setting up libkrb5support0:amd64 (1.13.2+dfsg-5ubuntu2.1) ... build 22-May-2019 15:14:14 Setting up libk5crypto3:amd64 (1.13.2+dfsg-5ubuntu2.1) ... build 22-May-2019 15:14:14 Setting up libkeyutils1:amd64 (1.5.9-8ubuntu1) ... build 22-May-2019 15:14:15 Setting up libkrb5-3:amd64 (1.13.2+dfsg-5ubuntu2.1) ... build 22-May-2019 15:14:15 Setting up libgssapi-krb5-2:amd64 (1.13.2+dfsg-5ubuntu2.1) ... build 22-May-2019 15:14:15 Setting up libhcrypto4-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 22-May-2019 15:14:16 Setting up libheimbase1-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 22-May-2019 15:14:16 Setting up libwind0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 22-May-2019 15:14:17 Setting up libhx509-5-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 22-May-2019 15:14:17 Setting up libkrb5-26-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 22-May-2019 15:14:17 Setting up libheimntlm0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 22-May-2019 15:14:17 Setting up libgssapi3-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 22-May-2019 15:14:17 Setting up libicu55:amd64 (55.1-7ubuntu0.4) ... build 22-May-2019 15:14:17 Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-14ubuntu0.1) ... build 22-May-2019 15:14:18 Setting up libsasl2-2:amd64 (2.1.26.dfsg1-14ubuntu0.1) ... build 22-May-2019 15:14:18 Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2ubuntu3.5) ... build 22-May-2019 15:14:18 Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d-1ubuntu0.1) ... build 22-May-2019 15:14:18 Setting up libxml2:amd64 (2.9.3+dfsg1-1ubuntu0.6) ... build 22-May-2019 15:14:18 Setting up libxmuu1:amd64 (2:1.1.2-2) ... build 22-May-2019 15:14:18 Setting up xauth (1:1.0.9-1ubuntu2) ... build 22-May-2019 15:14:19 Setting up m4 (1.4.17-5) ... build 22-May-2019 15:14:19 Setting up autoconf (2.69-9) ... build 22-May-2019 15:14:19 Setting up autotools-dev (20150820.1) ... build 22-May-2019 15:14:19 Setting up automake (1:1.15-4ubuntu1) ... build 22-May-2019 15:14:19 update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode build 22-May-2019 15:14:19 Setting up binutils (2.26.1-1ubuntu1~16.04.8) ... build 22-May-2019 15:14:20 Setting up libc-dev-bin (2.23-0ubuntu11) ... build 22-May-2019 15:14:20 Setting up linux-libc-dev:amd64 (4.4.0-148.174) ... build 22-May-2019 15:14:20 Setting up libc6-dev:amd64 (2.23-0ubuntu11) ... build 22-May-2019 15:14:21 Setting up libisl15:amd64 (0.16.1-1) ... build 22-May-2019 15:14:21 Setting up cpp-5 (5.4.0-6ubuntu1~16.04.11) ... build 22-May-2019 15:14:21 Setting up cpp (4:5.3.1-1ubuntu1) ... build 22-May-2019 15:14:21 Setting up libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 22-May-2019 15:14:21 Setting up libgomp1:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 22-May-2019 15:14:22 Setting up libitm1:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 22-May-2019 15:14:22 Setting up libatomic1:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 22-May-2019 15:14:22 Setting up libasan2:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 22-May-2019 15:14:22 Setting up liblsan0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 22-May-2019 15:14:22 Setting up libtsan0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 22-May-2019 15:14:22 Setting up libubsan0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 22-May-2019 15:14:22 Setting up libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 22-May-2019 15:14:23 Setting up libmpx0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 22-May-2019 15:14:23 Setting up libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 22-May-2019 15:14:23 Setting up libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 22-May-2019 15:14:23 Setting up gcc-5 (5.4.0-6ubuntu1~16.04.11) ... build 22-May-2019 15:14:24 Setting up gcc (4:5.3.1-1ubuntu1) ... build 22-May-2019 15:14:24 Setting up libstdc++-5-dev:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 22-May-2019 15:14:24 Setting up g++-5 (5.4.0-6ubuntu1~16.04.11) ... build 22-May-2019 15:14:25 Setting up g++ (4:5.3.1-1ubuntu1) ... build 22-May-2019 15:14:25 update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode build 22-May-2019 15:14:25 Setting up make (4.1-6) ... build 22-May-2019 15:14:25 Setting up 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libtinfo-dev:amd64 (6.0+20160213-1ubuntu1) ... build 22-May-2019 15:14:40 Setting up libncurses5-dev:amd64 (6.0+20160213-1ubuntu1) ... build 22-May-2019 15:14:40 Setting up libthai-data (0.1.24-2) ... build 22-May-2019 15:14:40 Setting up libthai0:amd64 (0.1.24-2) ... build 22-May-2019 15:14:41 Setting up libpango-1.0-0:amd64 (1.38.1-1) ... build 22-May-2019 15:14:41 Setting up libpangoft2-1.0-0:amd64 (1.38.1-1) ... build 22-May-2019 15:14:41 Setting up libpangocairo-1.0-0:amd64 (1.38.1-1) ... build 22-May-2019 15:14:41 Setting up libpaper1:amd64 (1.1.24+nmu4ubuntu1) ... build 22-May-2019 15:14:41 debconf: unable to initialize frontend: Dialog build 22-May-2019 15:14:41 debconf: (TERM is not set, so the dialog frontend is not usable.) build 22-May-2019 15:14:41 debconf: falling back to frontend: Readline build 22-May-2019 15:14:41 build 22-May-2019 15:14:41 Creating config file /etc/papersize with new version build 22-May-2019 15:14:41 Setting up libpaper-utils (1.1.24+nmu4ubuntu1) ... build 22-May-2019 15:14:42 Setting up libpcre16-3:amd64 (2:8.38-3.1) ... build 22-May-2019 15:14:42 Setting up libpcre32-3:amd64 (2:8.38-3.1) ... build 22-May-2019 15:14:42 Setting up libpcre3-dev:amd64 (2:8.38-3.1) ... build 22-May-2019 15:14:42 Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4.1) ... build 22-May-2019 15:14:42 Setting up libpng12-dev:amd64 (1.2.54-1ubuntu1.1) ... build 22-May-2019 15:14:42 Setting up libreadline6-dev:amd64 (6.3-8ubuntu2) ... build 22-May-2019 15:14:42 Setting up libreadline-dev:amd64 (6.3-8ubuntu2) ... build 22-May-2019 15:14:42 Setting up libtcl8.6:amd64 (8.6.5+dfsg-2) ... build 22-May-2019 15:14:43 Setting up libtiff5:amd64 (4.0.6-1ubuntu0.6) ... build 22-May-2019 15:14:43 Setting up libtk8.6:amd64 (8.6.5-1) ... build 22-May-2019 15:14:43 Setting up libxt6:amd64 (1:1.1.5-0ubuntu1) ... build 22-May-2019 15:14:43 Setting up pkg-config (0.29.1-0ubuntu1) ... build 22-May-2019 15:14:44 Setting up zip (3.0-11) ... build 22-May-2019 15:14:44 Setting up unzip (6.0-20ubuntu1) ... build 22-May-2019 15:14:45 Setting up xdg-utils (1.1.1-1ubuntu1.16.04.3) ... build 22-May-2019 15:14:45 Setting up r-base-core (3.4.4-1xenial0) ... build 22-May-2019 15:14:45 debconf: unable to initialize frontend: Dialog build 22-May-2019 15:14:45 debconf: (TERM is not set, so the dialog frontend is not usable.) build 22-May-2019 15:14:45 debconf: falling back to frontend: Readline build 22-May-2019 15:14:45 build 22-May-2019 15:14:45 Creating config file /etc/R/Renviron with new version build 22-May-2019 15:14:45 Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... build 22-May-2019 15:14:46 Setting up debhelper (9.20160115ubuntu3) ... build 22-May-2019 15:14:46 Setting up libwww-perl (6.15-1) ... build 22-May-2019 15:14:46 Setting up libxml-parser-perl (2.44-1build1) ... build 22-May-2019 15:14:46 Setting up intltool (0.51.0-2ubuntu1.16.04.1) ... build 22-May-2019 15:14:46 Setting up dh-translations (129) ... build 22-May-2019 15:14:46 Setting up cdbs (0.4.130ubuntu2) ... build 22-May-2019 15:14:46 Setting up r-base-dev (3.4.4-1xenial0) ... build 22-May-2019 15:14:46 Setting up dh-strip-nondeterminism (0.015-1) ... build 22-May-2019 15:14:47 Setting up liblwp-protocol-https-perl (6.06-2) ... build 22-May-2019 15:14:47 Processing triggers for libc-bin (2.23-0ubuntu11) ... build 22-May-2019 15:14:47 Processing triggers for systemd (229-4ubuntu21.21) ... build 22-May-2019 15:14:47 Installing package into '/usr/local/lib/R/site-library' build 22-May-2019 15:14:47 (as 'lib' is unspecified) build 22-May-2019 15:14:48 trying URL 'http://cran.rstudio.com/src/contrib/jsonlite_1.6.tar.gz' build 22-May-2019 15:14:48 Content type 'application/x-gzip' length 1052728 bytes (1.0 MB) build 22-May-2019 15:14:48 ================================================== build 22-May-2019 15:14:48 downloaded 1.0 MB build 22-May-2019 15:14:48 build 22-May-2019 15:14:48 * installing *source* package 'jsonlite' ... build 22-May-2019 15:14:49 ** package 'jsonlite' successfully unpacked and MD5 sums checked build 22-May-2019 15:14:49 ** libs build 22-May-2019 15:14:49 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base64.c -o base64.o build 22-May-2019 15:14:49 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_array.c -o collapse_array.o build 22-May-2019 15:14:49 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_object.c -o collapse_object.o build 22-May-2019 15:14:49 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_pretty.c -o collapse_pretty.o build 22-May-2019 15:14:49 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c escape_chars.c -o escape_chars.o build 22-May-2019 15:14:49 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c integer64_to_na.c -o integer64_to_na.o build 22-May-2019 15:14:49 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_datelist.c -o is_datelist.o build 22-May-2019 15:14:49 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_recordlist.c -o is_recordlist.o build 22-May-2019 15:14:49 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_scalarlist.c -o is_scalarlist.o build 22-May-2019 15:14:49 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c modp_numtoa.c -o modp_numtoa.o build 22-May-2019 15:14:49 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c null_to_na.c -o null_to_na.o build 22-May-2019 15:14:49 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c num_to_char.c -o num_to_char.o build 22-May-2019 15:14:49 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c parse.c -o parse.o build 22-May-2019 15:14:50 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c prettify.c -o prettify.o build 22-May-2019 15:14:50 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c push_parser.c -o push_parser.o build 22-May-2019 15:14:50 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c r-base64.c -o r-base64.o build 22-May-2019 15:14:50 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c register.c -o register.o build 22-May-2019 15:14:50 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c row_collapse.c -o row_collapse.o build 22-May-2019 15:14:50 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transpose_list.c -o transpose_list.o build 22-May-2019 15:14:50 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c validate.c -o validate.o build 22-May-2019 15:14:50 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl.c -o yajl/yajl.o build 22-May-2019 15:14:50 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o build 22-May-2019 15:14:50 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_buf.c -o yajl/yajl_buf.o build 22-May-2019 15:14:50 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_encode.c -o yajl/yajl_encode.o build 22-May-2019 15:14:50 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_gen.c -o yajl/yajl_gen.o build 22-May-2019 15:14:50 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_lex.c -o yajl/yajl_lex.o build 22-May-2019 15:14:51 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_parser.c -o yajl/yajl_parser.o build 22-May-2019 15:14:51 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_tree.c -o yajl/yajl_tree.o build 22-May-2019 15:14:51 ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o build 22-May-2019 15:14:51 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/usr/lib/R/lib -lR build 22-May-2019 15:14:51 installing to /usr/local/lib/R/site-library/jsonlite/libs build 22-May-2019 15:14:51 ** R build 22-May-2019 15:14:51 ** inst build 22-May-2019 15:14:51 ** preparing package for lazy loading build 22-May-2019 15:14:51 ** help build 22-May-2019 15:14:51 *** installing help indices build 22-May-2019 15:14:51 ** building package indices build 22-May-2019 15:14:51 ** installing vignettes build 22-May-2019 15:14:51 ** testing if installed package can be loaded build 22-May-2019 15:14:51 * DONE (jsonlite) build 22-May-2019 15:14:51  build 22-May-2019 15:14:51 The downloaded source packages are in build 22-May-2019 15:14:51 '/tmp/RtmppLGFN2/downloaded_packages' build 22-May-2019 15:14:51 [1] "/usr/local/lib/R/site-library/jsonlite" build 22-May-2019 15:14:58 Removing intermediate container 4b8c87fbe7d5 build 22-May-2019 15:14:58 ---> e5d358dd9f5a build 22-May-2019 15:14:58 Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/ build 22-May-2019 15:14:59 ---> 7a7b1c164127 build 22-May-2019 15:14:59 Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 22-May-2019 15:14:59 ---> Running in 7bea5d50d350 build 22-May-2019 15:15:00 Removing intermediate container 7bea5d50d350 build 22-May-2019 15:15:00 ---> 80ff113b5588 build 22-May-2019 15:15:00 Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 22-May-2019 15:15:00 ---> Running in 2437f59def2b build 22-May-2019 15:15:00 Removing intermediate container 2437f59def2b build 22-May-2019 15:15:00 ---> 6946d1fa29d0 build 22-May-2019 15:15:00 Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ build 22-May-2019 15:15:00 ---> Running in 5a9aedd27912 build 22-May-2019 15:15:01 Removing intermediate container 5a9aedd27912 build 22-May-2019 15:15:01 ---> 70c480b657d4 build 22-May-2019 15:15:01 Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi build 22-May-2019 15:15:01 ---> Running in 91e615d47445 build 22-May-2019 15:15:01 Removing intermediate container 91e615d47445 build 22-May-2019 15:15:01 ---> d23a3560f702 build 22-May-2019 15:15:01 Step 9/10 : ONBUILD ADD . /home/clowder/ build 22-May-2019 15:15:02 ---> Running in 89256dc3733c build 22-May-2019 15:15:02 Removing intermediate container 89256dc3733c build 22-May-2019 15:15:02 ---> 60fcfde2f909 build 22-May-2019 15:15:02 Step 10/10 : CMD python r_extractor.py build 22-May-2019 15:15:03 ---> Running in ab0bcad919a9 build 22-May-2019 15:15:03 Removing intermediate container ab0bcad919a9 build 22-May-2019 15:15:03 ---> 1b9d5a50fa2b build 22-May-2019 15:15:03 Successfully built 1b9d5a50fa2b build 22-May-2019 15:15:03 Successfully tagged clowder/extractors-simple-r-extractor:onbuild build 22-May-2019 15:15:03 Sending build context to Docker daemon 256kB build 22-May-2019 15:15:03 build 22-May-2019 15:15:03 Step 1/9 : FROM ubuntu:16.04 build 22-May-2019 15:15:03 ---> 2a697363a870 build 22-May-2019 15:15:03 Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" build 22-May-2019 15:15:03 ---> Using cache build 22-May-2019 15:15:03 ---> 95bc65a51a8e build 22-May-2019 15:15:03 Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* build 22-May-2019 15:15:03 ---> Using cache build 22-May-2019 15:15:03 ---> 787029ab4149 build 22-May-2019 15:15:03 Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder build 22-May-2019 15:15:03 ---> Using cache build 22-May-2019 15:15:03 ---> 56a6c0d95b9d build 22-May-2019 15:15:03 Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/ build 22-May-2019 15:15:03 ---> Using cache build 22-May-2019 15:15:03 ---> 1e767772215e build 22-May-2019 15:15:03 Step 6/9 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder build 22-May-2019 15:15:03 ---> Using cache build 22-May-2019 15:15:03 ---> 7670435254d9 build 22-May-2019 15:15:03 Step 7/9 : WORKDIR /home/clowder build 22-May-2019 15:15:03 ---> Using cache build 22-May-2019 15:15:03 ---> c8c33e184b7a build 22-May-2019 15:15:03 Step 8/9 : COPY notifications.json /home/clowder build 22-May-2019 15:15:03 ---> Using cache build 22-May-2019 15:15:03 ---> 9464f55d28bd build 22-May-2019 15:15:03 Step 9/9 : CMD python "./${MAIN_SCRIPT}" build 22-May-2019 15:15:03 ---> Using cache build 22-May-2019 15:15:03 ---> 2595c4a07dba build 22-May-2019 15:15:03 [Warning] One or more build-args [PYTHON_VERSION] were not consumed build 22-May-2019 15:15:03 Successfully built 2595c4a07dba build 22-May-2019 15:15:03 Successfully tagged clowder/pyclowder-python3:latest build 22-May-2019 15:15:03 Sending build context to Docker daemon 254.5kB build 22-May-2019 15:15:03 build 22-May-2019 15:15:04 Step 1/6 : FROM clowder/pyclowder build 22-May-2019 15:15:04 ---> 2595c4a07dba build 22-May-2019 15:15:04 Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 22-May-2019 15:15:04 ---> Using cache build 22-May-2019 15:15:04 ---> ec531484d138 build 22-May-2019 15:15:04 Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 22-May-2019 15:15:04 ---> Using cache build 22-May-2019 15:15:04 ---> cdf434ea7a1e build 22-May-2019 15:15:04 Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 22-May-2019 15:15:04 ---> Using cache build 22-May-2019 15:15:04 ---> e52496b3a7bb build 22-May-2019 15:15:04 Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 22-May-2019 15:15:04 ---> Using cache build 22-May-2019 15:15:04 ---> ff1d6c53ee77 build 22-May-2019 15:15:04 Step 6/6 : ONBUILD ADD . /home/clowder/ build 22-May-2019 15:15:04 ---> Using cache build 22-May-2019 15:15:04 ---> e51649d30458 build 22-May-2019 15:15:04 [Warning] One or more build-args [PYTHON_VERSION] were not consumed build 22-May-2019 15:15:04 Successfully built e51649d30458 build 22-May-2019 15:15:04 Successfully tagged clowder/pyclowder-python3:onbuild build 22-May-2019 15:15:04 Sending build context to Docker daemon 6.656kB build 22-May-2019 15:15:04 build 22-May-2019 15:15:04 Step 1/9 : FROM clowder/pyclowder:onbuild build 22-May-2019 15:15:04 # Executing 5 build triggers build 22-May-2019 15:15:04 ---> Using cache build 22-May-2019 15:15:04 ---> Using cache build 22-May-2019 15:15:04 ---> Using cache build 22-May-2019 15:15:04 ---> Using cache build 22-May-2019 15:15:04 ---> Using cache build 22-May-2019 15:15:04 ---> 23937e000553 build 22-May-2019 15:15:04 Step 2/9 : ENV EXTRACTION_FUNC="" build 22-May-2019 15:15:04 ---> Using cache build 22-May-2019 15:15:04 ---> b623e6289c01 build 22-May-2019 15:15:04 Step 3/9 : ENV EXTRACTION_MODULE="" build 22-May-2019 15:15:04 ---> Using cache build 22-May-2019 15:15:04 ---> aeb1347dd007 build 22-May-2019 15:15:04 Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 22-May-2019 15:15:04 ---> Using cache build 22-May-2019 15:15:04 ---> 766515be00ec build 22-May-2019 15:15:04 Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 22-May-2019 15:15:04 ---> Using cache build 22-May-2019 15:15:04 ---> 52d8342478fd build 22-May-2019 15:15:04 Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 22-May-2019 15:15:04 ---> Using cache build 22-May-2019 15:15:04 ---> 1a7363716ccb build 22-May-2019 15:15:04 Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 22-May-2019 15:15:04 ---> Using cache build 22-May-2019 15:15:04 ---> 9102cafac4fe build 22-May-2019 15:15:04 Step 8/9 : ONBUILD ADD . /home/clowder/ build 22-May-2019 15:15:04 ---> Using cache build 22-May-2019 15:15:04 ---> 6d4375274c24 build 22-May-2019 15:15:04 Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" build 22-May-2019 15:15:04 ---> Using cache build 22-May-2019 15:15:04 ---> 0efbc860cdf8 build 22-May-2019 15:15:04 [Warning] One or more build-args [PYTHON_VERSION] were not consumed build 22-May-2019 15:15:04 Successfully built 0efbc860cdf8 build 22-May-2019 15:15:04 Successfully tagged clowder/extractors-simple-extractor-python3:onbuild build 22-May-2019 15:15:04 Sending build context to Docker daemon 13.31kB build 22-May-2019 15:15:04 build 22-May-2019 15:15:04 Step 1/10 : FROM clowder/pyclowder:latest build 22-May-2019 15:15:04 ---> 2595c4a07dba build 22-May-2019 15:15:04 Step 2/10 : ENV R_SCRIPT="" R_FUNCTION="" build 22-May-2019 15:15:04 ---> Using cache build 22-May-2019 15:15:04 ---> 50a6265f91c4 build 22-May-2019 15:15:04 Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" build 22-May-2019 15:15:04 ---> Using cache build 22-May-2019 15:15:04 ---> e5d358dd9f5a build 22-May-2019 15:15:04 Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/ build 22-May-2019 15:15:04 ---> Using cache build 22-May-2019 15:15:04 ---> 7a7b1c164127 build 22-May-2019 15:15:04 Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 22-May-2019 15:15:04 ---> Using cache build 22-May-2019 15:15:04 ---> 80ff113b5588 build 22-May-2019 15:15:04 Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 22-May-2019 15:15:04 ---> Using cache build 22-May-2019 15:15:04 ---> 6946d1fa29d0 build 22-May-2019 15:15:04 Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ build 22-May-2019 15:15:04 ---> Using cache build 22-May-2019 15:15:04 ---> 70c480b657d4 build 22-May-2019 15:15:04 Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi build 22-May-2019 15:15:04 ---> Using cache build 22-May-2019 15:15:04 ---> d23a3560f702 build 22-May-2019 15:15:04 Step 9/10 : ONBUILD ADD . /home/clowder/ build 22-May-2019 15:15:04 ---> Using cache build 22-May-2019 15:15:04 ---> 60fcfde2f909 build 22-May-2019 15:15:04 Step 10/10 : CMD python r_extractor.py build 22-May-2019 15:15:04 ---> Using cache build 22-May-2019 15:15:04 ---> 1b9d5a50fa2b build 22-May-2019 15:15:04 [Warning] One or more build-args [PYTHON_VERSION] were not consumed build 22-May-2019 15:15:04 Successfully built 1b9d5a50fa2b build 22-May-2019 15:15:04 Successfully tagged clowder/extractors-simple-r-extractor-python3:onbuild build 22-May-2019 15:15:04 Sending build context to Docker daemon 9.216kB build 22-May-2019 15:15:04 build 22-May-2019 15:15:04 Step 1/2 : FROM clowder/pyclowder:onbuild build 22-May-2019 15:15:04 # Executing 5 build triggers build 22-May-2019 15:15:05 ---> Running in 5b4d06ce034e build 22-May-2019 15:15:06 Removing intermediate container 5b4d06ce034e build 22-May-2019 15:15:06 ---> Running in fd1ca09d0fa9 build 22-May-2019 15:15:09 Removing intermediate container fd1ca09d0fa9 build 22-May-2019 15:15:09 ---> 9e1093744d7e build 22-May-2019 15:15:09 Step 2/2 : ENV MAIN_SCRIPT="wordcount.py" build 22-May-2019 15:15:10 ---> Running in 9029547b2994 build 22-May-2019 15:15:10 Removing intermediate container 9029547b2994 build 22-May-2019 15:15:10 ---> bcb4a07d0a91 build 22-May-2019 15:15:10 Successfully built bcb4a07d0a91 build 22-May-2019 15:15:10 Successfully tagged clowder/extractors-wordcount:latest build 22-May-2019 15:15:10 Sending build context to Docker daemon 5.12kB build 22-May-2019 15:15:10 build 22-May-2019 15:15:10 Step 1/3 : FROM clowder/extractors-simple-extractor:onbuild build 22-May-2019 15:15:10 # Executing 5 build triggers build 22-May-2019 15:15:11 ---> Running in 6fb792b830e6 build 22-May-2019 15:15:13 Removing intermediate container 6fb792b830e6 build 22-May-2019 15:15:14 ---> Running in de2c51083774 build 22-May-2019 15:15:16 Removing intermediate container de2c51083774 build 22-May-2019 15:15:16 ---> 2013239f1329 build 22-May-2019 15:15:16 Step 2/3 : ENV EXTRACTION_FUNC="wordcount" build 22-May-2019 15:15:17 ---> Running in 461b9b8dbe51 build 22-May-2019 15:15:17 Removing intermediate container 461b9b8dbe51 build 22-May-2019 15:15:17 ---> 9169affd003a build 22-May-2019 15:15:17 Step 3/3 : ENV EXTRACTION_MODULE="wordcount" build 22-May-2019 15:15:17 ---> Running in 60fc3ab839d8 build 22-May-2019 15:15:17 Removing intermediate container 60fc3ab839d8 build 22-May-2019 15:15:17 ---> 1a0f0424b74b build 22-May-2019 15:15:17 Successfully built 1a0f0424b74b build 22-May-2019 15:15:18 Successfully tagged clowder/extractors-wordcount-simple-extractor:latest build 22-May-2019 15:15:18 Sending build context to Docker daemon 5.12kB build 22-May-2019 15:15:18 build 22-May-2019 15:15:18 Step 1/2 : FROM clowder/extractors-simple-r-extractor:onbuild build 22-May-2019 15:15:18 # Executing 5 build triggers build 22-May-2019 15:15:18 ---> Running in d646cff1dc2e build 22-May-2019 15:15:20 Removing intermediate container d646cff1dc2e build 22-May-2019 15:15:21 ---> Running in be72f5d0e5e7 build 22-May-2019 15:15:22 Removing intermediate container be72f5d0e5e7 build 22-May-2019 15:15:23 ---> d0e1af931fb4 build 22-May-2019 15:15:23 Step 2/2 : ENV R_SCRIPT="wordcount.R" R_FUNCTION="process_file" build 22-May-2019 15:15:23 ---> Running in 0d80684eb78b build 22-May-2019 15:15:24 Removing intermediate container 0d80684eb78b build 22-May-2019 15:15:24 ---> ba6f9eddd9f1 build 22-May-2019 15:15:24 Successfully built ba6f9eddd9f1 build 22-May-2019 15:15:24 Successfully tagged clowder/extractors-wordcount-simple-r-extractor:latest build 22-May-2019 15:15:24 Sending build context to Docker daemon 8.192kB build 22-May-2019 15:15:24 build 22-May-2019 15:15:24 Step 1/7 : FROM python:3.5 build 22-May-2019 15:15:25 3.5: Pulling from library/python build 22-May-2019 15:15:25 c5e155d5a1d1: Pulling fs layer build 22-May-2019 15:15:25 221d80d00ae9: Pulling fs layer build 22-May-2019 15:15:25 4250b3117dca: Pulling fs layer build 22-May-2019 15:15:25 3b7ca19181b2: Pulling fs layer build 22-May-2019 15:15:25 425d7b2a5bcc: Pulling fs layer build 22-May-2019 15:15:25 d7a526a3eca5: Pulling fs layer build 22-May-2019 15:15:25 03339fb09dd6: Pulling fs layer build 22-May-2019 15:15:25 594669b0b000: Pulling fs layer build 22-May-2019 15:15:25 7a79e4a07ea7: Pulling fs layer build 22-May-2019 15:15:25 3b7ca19181b2: Waiting build 22-May-2019 15:15:25 425d7b2a5bcc: Waiting build 22-May-2019 15:15:25 d7a526a3eca5: Waiting build 22-May-2019 15:15:25 03339fb09dd6: Waiting build 22-May-2019 15:15:25 594669b0b000: Waiting build 22-May-2019 15:15:25 7a79e4a07ea7: Waiting build 22-May-2019 15:15:25 221d80d00ae9: Verifying Checksum build 22-May-2019 15:15:25 221d80d00ae9: Download complete build 22-May-2019 15:15:26 4250b3117dca: Verifying Checksum build 22-May-2019 15:15:26 4250b3117dca: Download complete build 22-May-2019 15:15:26 c5e155d5a1d1: Verifying Checksum build 22-May-2019 15:15:26 c5e155d5a1d1: Download complete build 22-May-2019 15:15:27 d7a526a3eca5: Verifying Checksum build 22-May-2019 15:15:27 d7a526a3eca5: Download complete build 22-May-2019 15:15:27 3b7ca19181b2: Verifying Checksum build 22-May-2019 15:15:27 3b7ca19181b2: Download complete build 22-May-2019 15:15:27 594669b0b000: Verifying Checksum build 22-May-2019 15:15:27 594669b0b000: Download complete build 22-May-2019 15:15:28 7a79e4a07ea7: Verifying Checksum build 22-May-2019 15:15:28 7a79e4a07ea7: Download complete build 22-May-2019 15:15:28 03339fb09dd6: Verifying Checksum build 22-May-2019 15:15:28 03339fb09dd6: Download complete build 22-May-2019 15:15:31 c5e155d5a1d1: Pull complete build 22-May-2019 15:15:32 221d80d00ae9: Pull complete build 22-May-2019 15:15:33 425d7b2a5bcc: Verifying Checksum build 22-May-2019 15:15:33 425d7b2a5bcc: Download complete build 22-May-2019 15:15:33 4250b3117dca: Pull complete build 22-May-2019 15:15:36 3b7ca19181b2: Pull complete build 22-May-2019 15:15:45 425d7b2a5bcc: Pull complete build 22-May-2019 15:15:46 d7a526a3eca5: Pull complete build 22-May-2019 15:15:47 03339fb09dd6: Pull complete build 22-May-2019 15:15:48 594669b0b000: Pull complete build 22-May-2019 15:15:48 7a79e4a07ea7: Pull complete build 22-May-2019 15:15:48 Digest: sha256:7f890da10a88c961de1355f82eaf70e1730c1bfa5c06aefcbf58323ea319fcad build 22-May-2019 15:15:48 Status: Downloaded newer image for python:3.5 build 22-May-2019 15:15:48 ---> 74a0040526f9 build 22-May-2019 15:15:48 Step 2/7 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq/%2F" build 22-May-2019 15:15:48 ---> Running in 674dcf674243 build 22-May-2019 15:15:49 Removing intermediate container 674dcf674243 build 22-May-2019 15:15:49 ---> 6d2337cfa677 build 22-May-2019 15:15:49 Step 3/7 : EXPOSE 9999 build 22-May-2019 15:15:49 ---> Running in 27491817ed14 build 22-May-2019 15:15:49 Removing intermediate container 27491817ed14 build 22-May-2019 15:15:49 ---> e6f417bc88bd build 22-May-2019 15:15:49 Step 4/7 : RUN pip install pika==0.11.2 requests==2.18.4 build 22-May-2019 15:15:49 ---> Running in dab16d1c1119 build 22-May-2019 15:15:51 Collecting pika==0.11.2 build 22-May-2019 15:15:51 Downloading https://files.pythonhosted.org/packages/76/b4/0ada6918ac79ce4d8d45d0ba436ee21a1ef685047fb1dde4d2de0178b327/pika-0.11.2-py2.py3-none-any.whl (107kB) build 22-May-2019 15:15:51 Collecting requests==2.18.4 build 22-May-2019 15:15:51 Downloading https://files.pythonhosted.org/packages/49/df/50aa1999ab9bde74656c2919d9c0c085fd2b3775fd3eca826012bef76d8c/requests-2.18.4-py2.py3-none-any.whl (88kB) build 22-May-2019 15:15:51 Collecting urllib3<1.23,>=1.21.1 (from requests==2.18.4) build 22-May-2019 15:15:51 Downloading https://files.pythonhosted.org/packages/63/cb/6965947c13a94236f6d4b8223e21beb4d576dc72e8130bd7880f600839b8/urllib3-1.22-py2.py3-none-any.whl (132kB) build 22-May-2019 15:15:51 Collecting idna<2.7,>=2.5 (from requests==2.18.4) build 22-May-2019 15:15:52 Downloading https://files.pythonhosted.org/packages/27/cc/6dd9a3869f15c2edfab863b992838277279ce92663d334df9ecf5106f5c6/idna-2.6-py2.py3-none-any.whl (56kB) build 22-May-2019 15:15:52 Collecting chardet<3.1.0,>=3.0.2 (from requests==2.18.4) build 22-May-2019 15:15:52 Downloading https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl (133kB) build 22-May-2019 15:15:52 Collecting certifi>=2017.4.17 (from requests==2.18.4) build 22-May-2019 15:15:52 Downloading https://files.pythonhosted.org/packages/60/75/f692a584e85b7eaba0e03827b3d51f45f571c2e793dd731e598828d380aa/certifi-2019.3.9-py2.py3-none-any.whl (158kB) build 22-May-2019 15:15:52 Installing collected packages: pika, urllib3, idna, chardet, certifi, requests build 22-May-2019 15:15:52 Successfully installed certifi-2019.3.9 chardet-3.0.4 idna-2.6 pika-0.11.2 requests-2.18.4 urllib3-1.22 build 22-May-2019 15:15:53 Removing intermediate container dab16d1c1119 build 22-May-2019 15:15:53 ---> 7d30fb9a493e build 22-May-2019 15:15:53 Step 5/7 : WORKDIR /src build 22-May-2019 15:15:53 ---> Running in 8b0c9d61d0ca build 22-May-2019 15:15:54 Removing intermediate container 8b0c9d61d0ca build 22-May-2019 15:15:54 ---> 4794c4f5a8e9 build 22-May-2019 15:15:54 Step 6/7 : COPY monitor.py /src/ build 22-May-2019 15:15:54 ---> 27a11a99784e build 22-May-2019 15:15:54 Step 7/7 : CMD python monitor.py build 22-May-2019 15:15:54 ---> Running in 8643d080ad44 build 22-May-2019 15:15:55 Removing intermediate container 8643d080ad44 build 22-May-2019 15:15:55 ---> 528604b5b193 build 22-May-2019 15:15:55 Successfully built 528604b5b193 build 22-May-2019 15:15:55 Successfully tagged clowder/extractors-monitor:latest simple 22-May-2019 15:15:55 Finished task 'docker build' with result: Success simple 22-May-2019 15:15:55 Starting task 'docker push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 22-May-2019 15:15:55 Beginning to execute external process for build 'Clowder - pyclowder2 - clowder-clients-clean - Default Job #20 (CATS-PYC267-JOB1-20)'\n ... running command line: \n/bin/sh release.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=clowder-clients-clean\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_repository_157745170_git_branch=clowder-clients-clean\nbamboo_planRepository_1_branchDisplayName=clowder-clients-clean\nbamboo_repository_revision_number=8613f687206139c3760f91dacb3b39f19ae7cc8a\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC267-JOB1-20\nbamboo_repository_157745170_revision_number=8613f687206139c3760f91dacb3b39f19ae7cc8a\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1\nbamboo_planRepository_1_name=pyclowder2\nbamboo_buildKey=CATS-PYC267-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=clowder-clients-clean\nbamboo_planRepository_name=pyclowder2\nbamboo_buildNumber=20\nbamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt\nbamboo_repository_157745170_name=pyclowder2\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC267-JOB1-20\nbamboo_repository_157745170_previous_revision_number=44a25ac14e21f81c56eea5a8eaff43dbba852ab8\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_agentId=140673027\nbamboo_planName=Clowder - pyclowder2 - clowder-clients-clean\nbamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_6=/home/bamboo/bamboo-agent-home/temp/CATS-PYC267-JOB1-20-ScriptBuildTask-293446221152069716.sh\nbamboo_shortPlanKey=PYC267\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_shortJobKey=JOB1\nbamboo_repository_157745170_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_planRepository_revision=8613f687206139c3760f91dacb3b39f19ae7cc8a\nbamboo_buildTimeStamp=2019-05-22T15:09:11.172-05:00\nbamboo_repository_previous_revision_number=44a25ac14e21f81c56eea5a8eaff43dbba852ab8\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_3=/home/bamboo/bamboo-agent-home/temp/CATS-PYC267-JOB1-20-ScriptBuildTask-7513751674880114658.sh\nbamboo_planRepository_previousRevision=44a25ac14e21f81c56eea5a8eaff43dbba852ab8\nbamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_2=/bin/sh docker.sh\nbamboo_repository_git_branch=clowder-clients-clean\nbamboo_buildResultKey=CATS-PYC267-JOB1-20\nbamboo_repository_branch_name=clowder-clients-clean\nbamboo_buildPlanName=Clowder - pyclowder2 - clowder-clients-clean - Default Job\nbamboo_planRepository_1_revision=8613f687206139c3760f91dacb3b39f19ae7cc8a\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=pyclowder2\nbamboo_repository_157745170_branch_name=clowder-clients-clean\nbamboo_repository_157745170_git_username=\nbamboo_buildFailed=false\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_branch=clowder-clients-clean\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=44a25ac14e21f81c56eea5a8eaff43dbba852ab8\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_planRepository_branchDisplayName=clowder-clients-clean\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=clowder-clients-clean\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-157548579\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1\nbamboo_planKey=CATS-PYC267\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_1_branchName=clowder-clients-clean\n build 22-May-2019 15:15:55 Sending build context to Docker daemon 256kB build 22-May-2019 15:15:55 build 22-May-2019 15:15:55 Step 1/9 : FROM ubuntu:16.04 build 22-May-2019 15:15:55 ---> 2a697363a870 build 22-May-2019 15:15:55 Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> 95bc65a51a8e build 22-May-2019 15:15:55 Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> 787029ab4149 build 22-May-2019 15:15:55 Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> 56a6c0d95b9d build 22-May-2019 15:15:55 Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/ build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> 1e767772215e build 22-May-2019 15:15:55 Step 6/9 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> 7670435254d9 build 22-May-2019 15:15:55 Step 7/9 : WORKDIR /home/clowder build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> c8c33e184b7a build 22-May-2019 15:15:55 Step 8/9 : COPY notifications.json /home/clowder build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> 9464f55d28bd build 22-May-2019 15:15:55 Step 9/9 : CMD python "./${MAIN_SCRIPT}" build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> 2595c4a07dba build 22-May-2019 15:15:55 Successfully built 2595c4a07dba build 22-May-2019 15:15:55 Successfully tagged clowder/pyclowder:latest build 22-May-2019 15:15:55 Sending build context to Docker daemon 254.5kB build 22-May-2019 15:15:55 build 22-May-2019 15:15:55 Step 1/6 : FROM clowder/pyclowder build 22-May-2019 15:15:55 ---> 2595c4a07dba build 22-May-2019 15:15:55 Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> ec531484d138 build 22-May-2019 15:15:55 Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> cdf434ea7a1e build 22-May-2019 15:15:55 Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> e52496b3a7bb build 22-May-2019 15:15:55 Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> ff1d6c53ee77 build 22-May-2019 15:15:55 Step 6/6 : ONBUILD ADD . /home/clowder/ build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> e51649d30458 build 22-May-2019 15:15:55 Successfully built e51649d30458 build 22-May-2019 15:15:55 Successfully tagged clowder/pyclowder:onbuild build 22-May-2019 15:15:55 Sending build context to Docker daemon 12.8kB build 22-May-2019 15:15:55 build 22-May-2019 15:15:55 Step 1/5 : FROM clowder/pyclowder:onbuild build 22-May-2019 15:15:55 # Executing 5 build triggers build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> 6de7e87955dc build 22-May-2019 15:15:55 Step 2/5 : ENV MAIN_SCRIPT="binary_extractor.py" RABBITMQ_QUEUE="" IMAGE_BINARY="" IMAGE_TYPE="" IMAGE_THUMBNAIL_COMMAND="" IMAGE_PREVIEW_COMMAND="" PREVIEW_BINARY="" PREVIEW_TYPE="" PREVIEW_COMMAND="" build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> 9df07b88f9a1 build 22-May-2019 15:15:55 Step 3/5 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> f0ec0fffb21c build 22-May-2019 15:15:55 Step 4/5 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> 8336eeed57be build 22-May-2019 15:15:55 Step 5/5 : ONBUILD COPY extractor_info.json /home/clowder/ build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> 4006bfdb172b build 22-May-2019 15:15:55 Successfully built 4006bfdb172b build 22-May-2019 15:15:55 Successfully tagged clowder/extractors-binary-preview:onbuild build 22-May-2019 15:15:55 Sending build context to Docker daemon 6.656kB build 22-May-2019 15:15:55 build 22-May-2019 15:15:55 Step 1/9 : FROM clowder/pyclowder:onbuild build 22-May-2019 15:15:55 # Executing 5 build triggers build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> 23937e000553 build 22-May-2019 15:15:55 Step 2/9 : ENV EXTRACTION_FUNC="" build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> b623e6289c01 build 22-May-2019 15:15:55 Step 3/9 : ENV EXTRACTION_MODULE="" build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> aeb1347dd007 build 22-May-2019 15:15:55 Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> 766515be00ec build 22-May-2019 15:15:55 Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> 52d8342478fd build 22-May-2019 15:15:55 Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> 1a7363716ccb build 22-May-2019 15:15:55 Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> 9102cafac4fe build 22-May-2019 15:15:55 Step 8/9 : ONBUILD ADD . /home/clowder/ build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> 6d4375274c24 build 22-May-2019 15:15:55 Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" build 22-May-2019 15:15:55 ---> Using cache build 22-May-2019 15:15:55 ---> 0efbc860cdf8 build 22-May-2019 15:15:55 Successfully built 0efbc860cdf8 build 22-May-2019 15:15:56 Successfully tagged clowder/extractors-simple-extractor:onbuild build 22-May-2019 15:15:56 Sending build context to Docker daemon 13.31kB build 22-May-2019 15:15:56 build 22-May-2019 15:15:56 Step 1/10 : FROM clowder/pyclowder:latest build 22-May-2019 15:15:56 ---> 2595c4a07dba build 22-May-2019 15:15:56 Step 2/10 : ENV R_SCRIPT="" R_FUNCTION="" build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> 50a6265f91c4 build 22-May-2019 15:15:56 Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> e5d358dd9f5a build 22-May-2019 15:15:56 Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/ build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> 7a7b1c164127 build 22-May-2019 15:15:56 Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> 80ff113b5588 build 22-May-2019 15:15:56 Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> 6946d1fa29d0 build 22-May-2019 15:15:56 Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> 70c480b657d4 build 22-May-2019 15:15:56 Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> d23a3560f702 build 22-May-2019 15:15:56 Step 9/10 : ONBUILD ADD . /home/clowder/ build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> 60fcfde2f909 build 22-May-2019 15:15:56 Step 10/10 : CMD python r_extractor.py build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> 1b9d5a50fa2b build 22-May-2019 15:15:56 Successfully built 1b9d5a50fa2b build 22-May-2019 15:15:56 Successfully tagged clowder/extractors-simple-r-extractor:onbuild build 22-May-2019 15:15:56 Sending build context to Docker daemon 256kB build 22-May-2019 15:15:56 build 22-May-2019 15:15:56 Step 1/9 : FROM ubuntu:16.04 build 22-May-2019 15:15:56 ---> 2a697363a870 build 22-May-2019 15:15:56 Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> 95bc65a51a8e build 22-May-2019 15:15:56 Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> 787029ab4149 build 22-May-2019 15:15:56 Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> 56a6c0d95b9d build 22-May-2019 15:15:56 Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/ build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> 1e767772215e build 22-May-2019 15:15:56 Step 6/9 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> 7670435254d9 build 22-May-2019 15:15:56 Step 7/9 : WORKDIR /home/clowder build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> c8c33e184b7a build 22-May-2019 15:15:56 Step 8/9 : COPY notifications.json /home/clowder build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> 9464f55d28bd build 22-May-2019 15:15:56 Step 9/9 : CMD python "./${MAIN_SCRIPT}" build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> 2595c4a07dba build 22-May-2019 15:15:56 [Warning] One or more build-args [PYTHON_VERSION] were not consumed build 22-May-2019 15:15:56 Successfully built 2595c4a07dba build 22-May-2019 15:15:56 Successfully tagged clowder/pyclowder-python3:latest build 22-May-2019 15:15:56 Sending build context to Docker daemon 254.5kB build 22-May-2019 15:15:56 build 22-May-2019 15:15:56 Step 1/6 : FROM clowder/pyclowder build 22-May-2019 15:15:56 ---> 2595c4a07dba build 22-May-2019 15:15:56 Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> ec531484d138 build 22-May-2019 15:15:56 Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> cdf434ea7a1e build 22-May-2019 15:15:56 Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> e52496b3a7bb build 22-May-2019 15:15:56 Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> ff1d6c53ee77 build 22-May-2019 15:15:56 Step 6/6 : ONBUILD ADD . /home/clowder/ build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> e51649d30458 build 22-May-2019 15:15:56 [Warning] One or more build-args [PYTHON_VERSION] were not consumed build 22-May-2019 15:15:56 Successfully built e51649d30458 build 22-May-2019 15:15:56 Successfully tagged clowder/pyclowder-python3:onbuild build 22-May-2019 15:15:56 Sending build context to Docker daemon 6.656kB build 22-May-2019 15:15:56 build 22-May-2019 15:15:56 Step 1/9 : FROM clowder/pyclowder:onbuild build 22-May-2019 15:15:56 # Executing 5 build triggers build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> 23937e000553 build 22-May-2019 15:15:56 Step 2/9 : ENV EXTRACTION_FUNC="" build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> b623e6289c01 build 22-May-2019 15:15:56 Step 3/9 : ENV EXTRACTION_MODULE="" build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> aeb1347dd007 build 22-May-2019 15:15:56 Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> 766515be00ec build 22-May-2019 15:15:56 Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> 52d8342478fd build 22-May-2019 15:15:56 Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> 1a7363716ccb build 22-May-2019 15:15:56 Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> 9102cafac4fe build 22-May-2019 15:15:56 Step 8/9 : ONBUILD ADD . /home/clowder/ build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> 6d4375274c24 build 22-May-2019 15:15:56 Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" build 22-May-2019 15:15:56 ---> Using cache build 22-May-2019 15:15:56 ---> 0efbc860cdf8 build 22-May-2019 15:15:56 [Warning] One or more build-args [PYTHON_VERSION] were not consumed build 22-May-2019 15:15:56 Successfully built 0efbc860cdf8 build 22-May-2019 15:15:56 Successfully tagged clowder/extractors-simple-extractor-python3:onbuild build 22-May-2019 15:15:57 Sending build context to Docker daemon 13.31kB build 22-May-2019 15:15:57 build 22-May-2019 15:15:57 Step 1/10 : FROM clowder/pyclowder:latest build 22-May-2019 15:15:57 ---> 2595c4a07dba build 22-May-2019 15:15:57 Step 2/10 : ENV R_SCRIPT="" R_FUNCTION="" build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> 50a6265f91c4 build 22-May-2019 15:15:57 Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> e5d358dd9f5a build 22-May-2019 15:15:57 Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/ build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> 7a7b1c164127 build 22-May-2019 15:15:57 Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> 80ff113b5588 build 22-May-2019 15:15:57 Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> 6946d1fa29d0 build 22-May-2019 15:15:57 Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> 70c480b657d4 build 22-May-2019 15:15:57 Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> d23a3560f702 build 22-May-2019 15:15:57 Step 9/10 : ONBUILD ADD . /home/clowder/ build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> 60fcfde2f909 build 22-May-2019 15:15:57 Step 10/10 : CMD python r_extractor.py build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> 1b9d5a50fa2b build 22-May-2019 15:15:57 [Warning] One or more build-args [PYTHON_VERSION] were not consumed build 22-May-2019 15:15:57 Successfully built 1b9d5a50fa2b build 22-May-2019 15:15:57 Successfully tagged clowder/extractors-simple-r-extractor-python3:onbuild build 22-May-2019 15:15:57 Sending build context to Docker daemon 9.216kB build 22-May-2019 15:15:57 build 22-May-2019 15:15:57 Step 1/2 : FROM clowder/pyclowder:onbuild build 22-May-2019 15:15:57 # Executing 5 build triggers build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> 9e1093744d7e build 22-May-2019 15:15:57 Step 2/2 : ENV MAIN_SCRIPT="wordcount.py" build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> bcb4a07d0a91 build 22-May-2019 15:15:57 Successfully built bcb4a07d0a91 build 22-May-2019 15:15:57 Successfully tagged clowder/extractors-wordcount:latest build 22-May-2019 15:15:57 Sending build context to Docker daemon 5.12kB build 22-May-2019 15:15:57 build 22-May-2019 15:15:57 Step 1/3 : FROM clowder/extractors-simple-extractor:onbuild build 22-May-2019 15:15:57 # Executing 5 build triggers build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> 2013239f1329 build 22-May-2019 15:15:57 Step 2/3 : ENV EXTRACTION_FUNC="wordcount" build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> 9169affd003a build 22-May-2019 15:15:57 Step 3/3 : ENV EXTRACTION_MODULE="wordcount" build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> 1a0f0424b74b build 22-May-2019 15:15:57 Successfully built 1a0f0424b74b build 22-May-2019 15:15:57 Successfully tagged clowder/extractors-wordcount-simple-extractor:latest build 22-May-2019 15:15:57 Sending build context to Docker daemon 5.12kB build 22-May-2019 15:15:57 build 22-May-2019 15:15:57 Step 1/2 : FROM clowder/extractors-simple-r-extractor:onbuild build 22-May-2019 15:15:57 # Executing 5 build triggers build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> d0e1af931fb4 build 22-May-2019 15:15:57 Step 2/2 : ENV R_SCRIPT="wordcount.R" R_FUNCTION="process_file" build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> ba6f9eddd9f1 build 22-May-2019 15:15:57 Successfully built ba6f9eddd9f1 build 22-May-2019 15:15:57 Successfully tagged clowder/extractors-wordcount-simple-r-extractor:latest build 22-May-2019 15:15:57 Sending build context to Docker daemon 8.192kB build 22-May-2019 15:15:57 build 22-May-2019 15:15:57 Step 1/7 : FROM python:3.5 build 22-May-2019 15:15:57 ---> 74a0040526f9 build 22-May-2019 15:15:57 Step 2/7 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq/%2F" build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> 6d2337cfa677 build 22-May-2019 15:15:57 Step 3/7 : EXPOSE 9999 build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> e6f417bc88bd build 22-May-2019 15:15:57 Step 4/7 : RUN pip install pika==0.11.2 requests==2.18.4 build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> 7d30fb9a493e build 22-May-2019 15:15:57 Step 5/7 : WORKDIR /src build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> 4794c4f5a8e9 build 22-May-2019 15:15:57 Step 6/7 : COPY monitor.py /src/ build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> 27a11a99784e build 22-May-2019 15:15:57 Step 7/7 : CMD python monitor.py build 22-May-2019 15:15:57 ---> Using cache build 22-May-2019 15:15:57 ---> 528604b5b193 build 22-May-2019 15:15:57 Successfully built 528604b5b193 build 22-May-2019 15:15:57 Successfully tagged clowder/extractors-monitor:latest simple 22-May-2019 15:15:57 Finished task 'docker push' with result: Success simple 22-May-2019 15:15:57 Starting task 'test results' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit' simple 22-May-2019 15:15:57 Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1... simple 22-May-2019 15:15:57 Finished task 'test results' with result: Success simple 22-May-2019 15:15:57 Running post build plugin 'Docker Container Cleanup' simple 22-May-2019 15:15:57 Running post build plugin 'NCover Results Collector' simple 22-May-2019 15:15:57 Running post build plugin 'Clover Results Collector' simple 22-May-2019 15:15:57 Running post build plugin 'npm Cache Cleanup' simple 22-May-2019 15:15:57 Running post build plugin 'Artifact Copier' simple 22-May-2019 15:15:57 Finalising the build... simple 22-May-2019 15:15:57 Stopping timer. simple 22-May-2019 15:15:57 Build CATS-PYC267-JOB1-20 completed. simple 22-May-2019 15:15:58 Running on server: post build plugin 'NCover Results Collector' simple 22-May-2019 15:15:58 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 22-May-2019 15:15:58 Running on server: post build plugin 'Clover Delta Calculator' simple 22-May-2019 15:15:58 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 22-May-2019 15:15:58 All post build plugins have finished simple 22-May-2019 15:15:58 Generating build results summary... simple 22-May-2019 15:15:58 Saving build results to disk... simple 22-May-2019 15:15:58 Logging substituted variables... simple 22-May-2019 15:15:58 Indexing build results... simple 22-May-2019 15:15:58 Finished building CATS-PYC267-JOB1-20.