simple 18-May-2018 15:23:46 Build Clowder - pyclowder2 - SYN-63-Remove-data-from-geoserver - Default Job #1 (CATS-PYC274-JOB1-1) started building on agent buildserver-3.os.ncsa.edu simple 18-May-2018 15:23:46 Remote agent on host buildserver-3.os.ncsa.edu simple 18-May-2018 15:23:46 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC274-JOB1 simple 18-May-2018 15:23:46 Executing build Clowder - pyclowder2 - SYN-63-Remove-data-from-geoserver - Default Job #1 (CATS-PYC274-JOB1-1) simple 18-May-2018 15:23:46 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 18-May-2018 15:23:46 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC274-JOB1 simple 18-May-2018 15:23:46 Updating source code to revision: 5cf15e8c113145765727b74cc0b6be3319ee1739 simple 18-May-2018 15:23:46 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC274-JOB1/.git'. simple 18-May-2018 15:23:46 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC274-JOB1/.git/ simple 18-May-2018 15:23:46 Fetching 'refs/heads/SYN-63-Remove-data-from-geoserver' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git'. Will try to do a shallow fetch. simple 18-May-2018 15:23:46 Warning: Permanently added '[127.0.0.1]:38661' (RSA) to the list of known hosts. simple 18-May-2018 15:23:47 From ssh://127.0.0.1:38661/cats/pyclowder2 simple 18-May-2018 15:23:47 * [new branch] SYN-63-Remove-data-from-geoserver -> SYN-63-Remove-data-from-geoserver simple 18-May-2018 15:23:47 * [new tag] v2.0.3 -> v2.0.3 simple 18-May-2018 15:23:47 Checking out revision 5cf15e8c113145765727b74cc0b6be3319ee1739. simple 18-May-2018 15:23:47 Switched to branch 'SYN-63-Remove-data-from-geoserver' simple 18-May-2018 15:23:47 Updated source code to revision: 5cf15e8c113145765727b74cc0b6be3319ee1739 simple 18-May-2018 15:23:47 Finished task 'Checkout Default Repository' with result: Success simple 18-May-2018 15:23:47 Running pre-build action: VCS Version Collector simple 18-May-2018 15:23:47 Starting task 'pytest' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 18-May-2018 15:23:47 Beginning to execute external process for build 'Clowder - pyclowder2 - SYN-63-Remove-data-from-geoserver - Default Job #1 (CATS-PYC274-JOB1-1)'\n ... running command line: \n/home/bamboo/bamboo-agent-home/temp/CATS-PYC274-JOB1-1-ScriptBuildTask-5661017566155813445.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC274-JOB1\n ... using extra environment variables: 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build 18-May-2018 15:23:47 New python executable in /tmp/virtualenv/pyclowder2/bin/python2 build 18-May-2018 15:23:47 Also creating executable in /tmp/virtualenv/pyclowder2/bin/python build 18-May-2018 15:23:49 Installing setuptools, pkg_resources, pip, wheel...done. build 18-May-2018 15:23:49 Running virtualenv with interpreter /usr/bin/python2 build 18-May-2018 15:23:49 Collecting enum34==1.1.6 (from -r requirements.txt (line 1)) build 18-May-2018 15:23:49 Using cached https://files.pythonhosted.org/packages/c5/db/e56e6b4bbac7c4a06de1c50de6fe1ef3810018ae11732a50f15f62c7d050/enum34-1.1.6-py2-none-any.whl build 18-May-2018 15:23:49 Collecting pika==0.11.2 (from -r requirements.txt (line 2)) build 18-May-2018 15:23:49 Using cached https://files.pythonhosted.org/packages/76/b4/0ada6918ac79ce4d8d45d0ba436ee21a1ef685047fb1dde4d2de0178b327/pika-0.11.2-py2.py3-none-any.whl build 18-May-2018 15:23:50 Collecting PyYAML==3.12 (from -r requirements.txt (line 3)) build 18-May-2018 15:23:50 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pika-0.11.2 py-1.5.3 pytest-3.0.3 pytest-cache-1.0 pytest-pep8-1.0.6 requests-2.18.4 urllib3-1.22 wheel-0.24.0 build 18-May-2018 15:23:51 ============================= test session starts ============================== build 18-May-2018 15:23:51 platform linux2 -- Python 2.7.12, pytest-3.0.3, py-1.5.3, pluggy-0.4.0 build 18-May-2018 15:23:51 rootdir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC274-JOB1, inifile: setup.cfg build 18-May-2018 15:23:51 plugins: pep8-1.0.6 build 18-May-2018 15:23:51 collected 16 items build 18-May-2018 15:23:51 build 18-May-2018 15:23:51 setup.py . build 18-May-2018 15:23:51 docs/source/conf.py . build 18-May-2018 15:23:51 pyclowder/__init__.py . build 18-May-2018 15:23:51 pyclowder/client.py . build 18-May-2018 15:23:51 pyclowder/collections.py . build 18-May-2018 15:23:51 pyclowder/connectors.py . build 18-May-2018 15:23:51 pyclowder/datasets.py . build 18-May-2018 15:23:51 pyclowder/extractors.py . build 18-May-2018 15:23:51 pyclowder/files.py . build 18-May-2018 15:23:52 pyclowder/geostreams.py . build 18-May-2018 15:23:52 pyclowder/sections.py . build 18-May-2018 15:23:52 pyclowder/utils.py . build 18-May-2018 15:23:52 sample-extractors/binary-preview/binary_extractor.py . build 18-May-2018 15:23:52 sample-extractors/echo/echo.py . build 18-May-2018 15:23:52 sample-extractors/wordcount/wordcount.py . build 18-May-2018 15:23:52 tests/clientTest.py . build 18-May-2018 15:23:52 build 18-May-2018 15:23:52 generated xml file: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC274-JOB1/test-reports/results.xml build 18-May-2018 15:23:52 ========================== 16 passed in 0.33 seconds =========================== simple 18-May-2018 15:23:52 Finished task 'pytest' with result: Success simple 18-May-2018 15:23:52 Starting task 'docker build' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 18-May-2018 15:23:52 Beginning to execute external process for build 'Clowder - pyclowder2 - SYN-63-Remove-data-from-geoserver - Default Job #1 (CATS-PYC274-JOB1-1)'\n ... running command line: \n/bin/sh docker.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC274-JOB1\n ... using extra environment variables: 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Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC274-JOB1-1\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_agentId=143032321\nbamboo_planName=Clowder - pyclowder2 - 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Job\nbamboo_planRepository_1_revision=5cf15e8c113145765727b74cc0b6be3319ee1739\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=pyclowder2\nbamboo_repository_160727082_name=pyclowder2\nbamboo_repository_160727082_revision_number=5cf15e8c113145765727b74cc0b6be3319ee1739\nbamboo_buildFailed=false\nbamboo_repository_160727082_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_branch=SYN-63-Remove-data-from-geoserver\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_planRepository_branchDisplayName=SYN-63-Remove-data-from-geoserver\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=SYN-63-Remove-data-from-geoserver\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_repository_160727082_branch_name=SYN-63-Remove-data-from-geoserver\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-160530513\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC274-JOB1\nbamboo_planKey=CATS-PYC274\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_repository_160727082_git_username=\nbamboo_planRepository_1_branchName=SYN-63-Remove-data-from-geoserver\n build 18-May-2018 15:23:52 Sending build context to Docker daemon 212kB build 18-May-2018 15:23:52 build 18-May-2018 15:23:52 Step 1/8 : FROM ubuntu:16.04 build 18-May-2018 15:23:52 ---> 0b1edfbffd27 build 18-May-2018 15:23:52 Step 2/8 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="https://clowder.ncsa.illinois.edu/extractors" MAIN_SCRIPT="" build 18-May-2018 15:23:52 ---> Running in 7bbef832561b build 18-May-2018 15:23:52 Removing intermediate container 7bbef832561b build 18-May-2018 15:23:52 ---> 1033a5c4a741 build 18-May-2018 15:23:52 Step 3/8 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* build 18-May-2018 15:23:52 ---> Running in 19cefc40922a build 18-May-2018 15:23:58 Reading package lists... build 18-May-2018 15:23:58 Building dependency tree... build 18-May-2018 15:23:58 Reading state information... build 18-May-2018 15:23:58 The following additional packages will be installed: build 18-May-2018 15:23:58 ca-certificates libexpat1 libffi6 libpython-stdlib libpython2.7-minimal build 18-May-2018 15:23:58 libpython2.7-stdlib libsqlite3-0 libssl1.0.0 mime-support openssl build 18-May-2018 15:23:58 python-minimal python-pip-whl python2.7 python2.7-minimal build 18-May-2018 15:23:58 Suggested packages: build 18-May-2018 15:23:58 python-doc python-tk python2.7-doc binutils binfmt-support build 18-May-2018 15:23:58 Recommended packages: build 18-May-2018 15:23:58 file build-essential python-all-dev python-setuptools python-wheel build 18-May-2018 15:23:58 The following NEW packages will be installed: build 18-May-2018 15:23:58 ca-certificates libexpat1 libffi6 libpython-stdlib libpython2.7-minimal build 18-May-2018 15:23:58 libpython2.7-stdlib libsqlite3-0 libssl1.0.0 mime-support openssl python build 18-May-2018 15:23:58 python-minimal python-pip python-pip-whl python2.7 python2.7-minimal build 18-May-2018 15:23:58 0 upgraded, 16 newly installed, 0 to remove and 0 not upgraded. build 18-May-2018 15:23:58 Need to get 7392 kB of archives. build 18-May-2018 15:23:58 After this operation, 24.8 MB of additional disk space will be used. build 18-May-2018 15:23:58 Get:1 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-minimal amd64 2.7.12-1ubuntu0~16.04.3 [340 kB] build 18-May-2018 15:23:59 Get:2 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7-minimal amd64 2.7.12-1ubuntu0~16.04.3 [1261 kB] build 18-May-2018 15:23:59 Get:3 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-minimal amd64 2.7.12-1~16.04 [28.1 kB] build 18-May-2018 15:23:59 Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 mime-support all 3.59ubuntu1 [31.0 kB] build 18-May-2018 15:23:59 Get:5 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libexpat1 amd64 2.1.0-7ubuntu0.16.04.3 [71.2 kB] build 18-May-2018 15:23:59 Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libffi6 amd64 3.2.1-4 [17.8 kB] build 18-May-2018 15:23:59 Get:7 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsqlite3-0 amd64 3.11.0-1ubuntu1 [396 kB] build 18-May-2018 15:23:59 Get:8 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libssl1.0.0 amd64 1.0.2g-1ubuntu4.12 [1085 kB] build 18-May-2018 15:23:59 Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-stdlib amd64 2.7.12-1ubuntu0~16.04.3 [1880 kB] build 18-May-2018 15:23:59 Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7 amd64 2.7.12-1ubuntu0~16.04.3 [224 kB] build 18-May-2018 15:23:59 Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython-stdlib amd64 2.7.12-1~16.04 [7768 B] build 18-May-2018 15:23:59 Get:12 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python amd64 2.7.12-1~16.04 [137 kB] build 18-May-2018 15:23:59 Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 openssl amd64 1.0.2g-1ubuntu4.12 [492 kB] build 18-May-2018 15:23:59 Get:14 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 ca-certificates all 20170717~16.04.1 [168 kB] build 18-May-2018 15:23:59 Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 python-pip-whl all 8.1.1-2ubuntu0.4 [1110 kB] build 18-May-2018 15:23:59 Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 python-pip all 8.1.1-2ubuntu0.4 [144 kB] build 18-May-2018 15:24:00 debconf: delaying package configuration, since apt-utils is not installed build 18-May-2018 15:24:00 Fetched 7392 kB in 1s (5633 kB/s) build 18-May-2018 15:24:00 Selecting previously unselected package libpython2.7-minimal:amd64. build 18-May-2018 15:24:00 (Reading database ... build 18-May-2018 15:24:00 (Reading database ... 5% build 18-May-2018 15:24:00 (Reading database ... 10% build 18-May-2018 15:24:00 (Reading database ... 15% build 18-May-2018 15:24:00 (Reading database ... 20% build 18-May-2018 15:24:00 (Reading database ... 25% build 18-May-2018 15:24:00 (Reading database ... 30% build 18-May-2018 15:24:00 (Reading database ... 35% build 18-May-2018 15:24:00 (Reading database ... 40% build 18-May-2018 15:24:00 (Reading database ... 45% build 18-May-2018 15:24:00 (Reading database ... 50% build 18-May-2018 15:24:00 (Reading database ... 55% build 18-May-2018 15:24:00 (Reading database ... 60% build 18-May-2018 15:24:00 (Reading database ... 65% build 18-May-2018 15:24:00 (Reading database ... 70% build 18-May-2018 15:24:00 (Reading database ... 75% build 18-May-2018 15:24:00 (Reading database ... 80% build 18-May-2018 15:24:00 (Reading database ... 85% build 18-May-2018 15:24:00 (Reading database ... 90% build 18-May-2018 15:24:00 (Reading database ... 95% build 18-May-2018 15:24:00 (Reading database ... 100% build 18-May-2018 15:24:00 (Reading database ... 4768 files and directories currently installed.) build 18-May-2018 15:24:00 Preparing to unpack .../libpython2.7-minimal_2.7.12-1ubuntu0~16.04.3_amd64.deb ... build 18-May-2018 15:24:00 Unpacking libpython2.7-minimal:amd64 (2.7.12-1ubuntu0~16.04.3) ... build 18-May-2018 15:24:00 Selecting previously unselected package python2.7-minimal. build 18-May-2018 15:24:00 Preparing to unpack .../python2.7-minimal_2.7.12-1ubuntu0~16.04.3_amd64.deb ... build 18-May-2018 15:24:01 Unpacking python2.7-minimal (2.7.12-1ubuntu0~16.04.3) ... build 18-May-2018 15:24:01 Selecting previously unselected package python-minimal. build 18-May-2018 15:24:01 Preparing to unpack .../python-minimal_2.7.12-1~16.04_amd64.deb ... build 18-May-2018 15:24:01 Unpacking python-minimal (2.7.12-1~16.04) ... build 18-May-2018 15:24:01 Selecting previously unselected package mime-support. build 18-May-2018 15:24:01 Preparing to unpack .../mime-support_3.59ubuntu1_all.deb ... build 18-May-2018 15:24:01 Unpacking mime-support (3.59ubuntu1) ... build 18-May-2018 15:24:02 Selecting previously unselected package libexpat1:amd64. build 18-May-2018 15:24:02 Preparing to unpack .../libexpat1_2.1.0-7ubuntu0.16.04.3_amd64.deb ... build 18-May-2018 15:24:02 Unpacking libexpat1:amd64 (2.1.0-7ubuntu0.16.04.3) ... build 18-May-2018 15:24:02 Selecting previously unselected package libffi6:amd64. build 18-May-2018 15:24:02 Preparing to unpack .../libffi6_3.2.1-4_amd64.deb ... build 18-May-2018 15:24:02 Unpacking libffi6:amd64 (3.2.1-4) ... build 18-May-2018 15:24:03 Selecting previously unselected package libsqlite3-0:amd64. build 18-May-2018 15:24:03 Preparing to unpack .../libsqlite3-0_3.11.0-1ubuntu1_amd64.deb ... build 18-May-2018 15:24:03 Unpacking libsqlite3-0:amd64 (3.11.0-1ubuntu1) ... build 18-May-2018 15:24:03 Selecting previously unselected package libssl1.0.0:amd64. build 18-May-2018 15:24:03 Preparing to unpack .../libssl1.0.0_1.0.2g-1ubuntu4.12_amd64.deb ... build 18-May-2018 15:24:03 Unpacking libssl1.0.0:amd64 (1.0.2g-1ubuntu4.12) ... build 18-May-2018 15:24:04 Selecting previously unselected package libpython2.7-stdlib:amd64. build 18-May-2018 15:24:04 Preparing to unpack .../libpython2.7-stdlib_2.7.12-1ubuntu0~16.04.3_amd64.deb ... build 18-May-2018 15:24:04 Unpacking libpython2.7-stdlib:amd64 (2.7.12-1ubuntu0~16.04.3) ... build 18-May-2018 15:24:05 Selecting previously unselected package python2.7. build 18-May-2018 15:24:05 Preparing to unpack .../python2.7_2.7.12-1ubuntu0~16.04.3_amd64.deb ... build 18-May-2018 15:24:05 Unpacking python2.7 (2.7.12-1ubuntu0~16.04.3) ... build 18-May-2018 15:24:05 Selecting previously unselected package libpython-stdlib:amd64. build 18-May-2018 15:24:05 Preparing to unpack .../libpython-stdlib_2.7.12-1~16.04_amd64.deb ... build 18-May-2018 15:24:05 Unpacking libpython-stdlib:amd64 (2.7.12-1~16.04) ... build 18-May-2018 15:24:05 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 18-May-2018 15:24:05 Setting up libpython2.7-minimal:amd64 (2.7.12-1ubuntu0~16.04.3) ... build 18-May-2018 15:24:06 Setting up python2.7-minimal (2.7.12-1ubuntu0~16.04.3) ... build 18-May-2018 15:24:06 Linking and byte-compiling packages for runtime python2.7... build 18-May-2018 15:24:06 Setting up python-minimal (2.7.12-1~16.04) ... build 18-May-2018 15:24:06 Selecting previously unselected package python. build 18-May-2018 15:24:06 (Reading database ... build 18-May-2018 15:24:06 (Reading database ... 5% build 18-May-2018 15:24:06 (Reading database ... 10% build 18-May-2018 15:24:06 (Reading database ... 15% build 18-May-2018 15:24:06 (Reading database ... 20% build 18-May-2018 15:24:06 (Reading database ... 25% build 18-May-2018 15:24:06 (Reading database ... 30% build 18-May-2018 15:24:06 (Reading database ... 35% build 18-May-2018 15:24:06 (Reading database ... 40% build 18-May-2018 15:24:06 (Reading database ... 45% build 18-May-2018 15:24:06 (Reading database ... 50% build 18-May-2018 15:24:06 (Reading database ... 55% build 18-May-2018 15:24:06 (Reading database ... 60% build 18-May-2018 15:24:06 (Reading database ... 65% build 18-May-2018 15:24:06 (Reading database ... 70% build 18-May-2018 15:24:06 (Reading database ... 75% build 18-May-2018 15:24:06 (Reading database ... 80% build 18-May-2018 15:24:06 (Reading database ... 85% build 18-May-2018 15:24:06 (Reading database ... 90% build 18-May-2018 15:24:06 (Reading database ... 95% build 18-May-2018 15:24:06 (Reading database ... 100% build 18-May-2018 15:24:06 (Reading database ... 5579 files and directories currently installed.) build 18-May-2018 15:24:06 Preparing to unpack .../python_2.7.12-1~16.04_amd64.deb ... build 18-May-2018 15:24:06 Unpacking python (2.7.12-1~16.04) ... build 18-May-2018 15:24:07 Selecting previously unselected package openssl. build 18-May-2018 15:24:07 Preparing to unpack .../openssl_1.0.2g-1ubuntu4.12_amd64.deb ... build 18-May-2018 15:24:07 Unpacking openssl (1.0.2g-1ubuntu4.12) ... build 18-May-2018 15:24:07 Selecting previously unselected package ca-certificates. build 18-May-2018 15:24:07 Preparing to unpack .../ca-certificates_20170717~16.04.1_all.deb ... build 18-May-2018 15:24:07 Unpacking ca-certificates (20170717~16.04.1) ... build 18-May-2018 15:24:08 Selecting previously unselected package python-pip-whl. build 18-May-2018 15:24:08 Preparing to unpack .../python-pip-whl_8.1.1-2ubuntu0.4_all.deb ... build 18-May-2018 15:24:08 Unpacking python-pip-whl (8.1.1-2ubuntu0.4) ... build 18-May-2018 15:24:08 Selecting previously unselected package python-pip. build 18-May-2018 15:24:08 Preparing to unpack .../python-pip_8.1.1-2ubuntu0.4_all.deb ... build 18-May-2018 15:24:08 Unpacking python-pip (8.1.1-2ubuntu0.4) ... build 18-May-2018 15:24:08 Setting up mime-support (3.59ubuntu1) ... build 18-May-2018 15:24:09 Setting up libexpat1:amd64 (2.1.0-7ubuntu0.16.04.3) ... build 18-May-2018 15:24:09 Setting up libffi6:amd64 (3.2.1-4) ... build 18-May-2018 15:24:09 Setting up libsqlite3-0:amd64 (3.11.0-1ubuntu1) ... build 18-May-2018 15:24:10 Setting up libssl1.0.0:amd64 (1.0.2g-1ubuntu4.12) ... build 18-May-2018 15:24:10 debconf: unable to initialize frontend: Dialog build 18-May-2018 15:24:10 debconf: (TERM is not set, so the dialog frontend is not usable.) build 18-May-2018 15:24:10 debconf: falling back to frontend: Readline build 18-May-2018 15:24:10 debconf: unable to initialize frontend: Readline build 18-May-2018 15:24:10 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) build 18-May-2018 15:24:10 debconf: falling back to frontend: Teletype build 18-May-2018 15:24:10 Setting up libpython2.7-stdlib:amd64 (2.7.12-1ubuntu0~16.04.3) ... build 18-May-2018 15:24:10 Setting up python2.7 (2.7.12-1ubuntu0~16.04.3) ... build 18-May-2018 15:24:11 Setting up libpython-stdlib:amd64 (2.7.12-1~16.04) ... build 18-May-2018 15:24:11 Setting up python (2.7.12-1~16.04) ... build 18-May-2018 15:24:11 Setting up openssl (1.0.2g-1ubuntu4.12) ... build 18-May-2018 15:24:11 Setting up ca-certificates (20170717~16.04.1) ... build 18-May-2018 15:24:11 debconf: unable to initialize frontend: Dialog build 18-May-2018 15:24:11 debconf: (TERM is not set, so the dialog frontend is not usable.) build 18-May-2018 15:24:11 debconf: falling back to frontend: Readline build 18-May-2018 15:24:11 debconf: unable to initialize frontend: Readline build 18-May-2018 15:24:11 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) build 18-May-2018 15:24:11 debconf: falling back to frontend: Teletype build 18-May-2018 15:24:12 Setting up python-pip-whl (8.1.1-2ubuntu0.4) ... build 18-May-2018 15:24:12 Setting up python-pip (8.1.1-2ubuntu0.4) ... build 18-May-2018 15:24:13 Processing triggers for libc-bin (2.23-0ubuntu10) ... build 18-May-2018 15:24:14 Processing triggers for ca-certificates (20170717~16.04.1) ... build 18-May-2018 15:24:14 Updating certificates in /etc/ssl/certs... build 18-May-2018 15:24:15 148 added, 0 removed; done. build 18-May-2018 15:24:15 Running hooks in /etc/ca-certificates/update.d... build 18-May-2018 15:24:15 done. build 18-May-2018 15:24:16 Collecting setuptools build 18-May-2018 15:24:17 Downloading https://files.pythonhosted.org/packages/8c/10/79282747f9169f21c053c562a0baa21815a8c7879be97abd930dbcf862e8/setuptools-39.1.0-py2.py3-none-any.whl (566kB) build 18-May-2018 15:24:17 Installing collected packages: setuptools build 18-May-2018 15:24:17 Successfully installed setuptools-39.1.0 build 18-May-2018 15:24:17 You are using pip version 8.1.1, however version 10.0.1 is available. build 18-May-2018 15:24:17 You should consider upgrading via the 'pip install --upgrade pip' command. build 18-May-2018 15:24:19 Removing intermediate container 19cefc40922a build 18-May-2018 15:24:19 ---> 608fb22bd37e build 18-May-2018 15:24:19 Step 4/8 : COPY pyclowder /tmp/pyclowder/pyclowder build 18-May-2018 15:24:19 ---> ae4cf62d650d build 18-May-2018 15:24:19 Step 5/8 : COPY setup.py description.rst /tmp/pyclowder/ build 18-May-2018 15:24:20 ---> 39f72306451b build 18-May-2018 15:24:20 Step 6/8 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder build 18-May-2018 15:24:20 ---> Running in 09f524964190 build 18-May-2018 15:24:21 Processing /tmp/pyclowder build 18-May-2018 15:24:21 Collecting enum34==1.1.6 (from pyclowder===2.0.3) build 18-May-2018 15:24:22 Downloading https://files.pythonhosted.org/packages/c5/db/e56e6b4bbac7c4a06de1c50de6fe1ef3810018ae11732a50f15f62c7d050/enum34-1.1.6-py2-none-any.whl build 18-May-2018 15:24:22 Collecting pika==0.11.2 (from pyclowder===2.0.3) build 18-May-2018 15:24:22 Downloading https://files.pythonhosted.org/packages/76/b4/0ada6918ac79ce4d8d45d0ba436ee21a1ef685047fb1dde4d2de0178b327/pika-0.11.2-py2.py3-none-any.whl (107kB) build 18-May-2018 15:24:22 Collecting PyYAML==3.12 (from pyclowder===2.0.3) build 18-May-2018 15:24:22 Downloading https://files.pythonhosted.org/packages/4a/85/db5a2df477072b2902b0eb892feb37d88ac635d36245a72a6a69b23b383a/PyYAML-3.12.tar.gz (253kB) build 18-May-2018 15:24:22 Collecting requests==2.18.4 (from pyclowder===2.0.3) build 18-May-2018 15:24:22 Downloading https://files.pythonhosted.org/packages/49/df/50aa1999ab9bde74656c2919d9c0c085fd2b3775fd3eca826012bef76d8c/requests-2.18.4-py2.py3-none-any.whl (88kB) build 18-May-2018 15:24:22 Collecting certifi>=2017.4.17 (from requests==2.18.4->pyclowder===2.0.3) build 18-May-2018 15:24:22 Downloading https://files.pythonhosted.org/packages/7c/e6/92ad559b7192d846975fc916b65f667c7b8c3a32bea7372340bfe9a15fa5/certifi-2018.4.16-py2.py3-none-any.whl (150kB) build 18-May-2018 15:24:22 Collecting chardet<3.1.0,>=3.0.2 (from requests==2.18.4->pyclowder===2.0.3) build 18-May-2018 15:24:22 Downloading https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl (133kB) build 18-May-2018 15:24:22 Collecting idna<2.7,>=2.5 (from requests==2.18.4->pyclowder===2.0.3) build 18-May-2018 15:24:22 Downloading https://files.pythonhosted.org/packages/27/cc/6dd9a3869f15c2edfab863b992838277279ce92663d334df9ecf5106f5c6/idna-2.6-py2.py3-none-any.whl (56kB) build 18-May-2018 15:24:22 Collecting urllib3<1.23,>=1.21.1 (from requests==2.18.4->pyclowder===2.0.3) build 18-May-2018 15:24:22 Downloading https://files.pythonhosted.org/packages/63/cb/6965947c13a94236f6d4b8223e21beb4d576dc72e8130bd7880f600839b8/urllib3-1.22-py2.py3-none-any.whl (132kB) build 18-May-2018 15:24:23 Building wheels for collected packages: PyYAML build 18-May-2018 15:24:23 Running setup.py bdist_wheel for PyYAML: started build 18-May-2018 15:24:23 Running setup.py bdist_wheel for PyYAML: finished with status 'error' build 18-May-2018 15:24:23 Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-1weIXE/PyYAML/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpN39w66pip-wheel- --python-tag cp27: build 18-May-2018 15:24:23 usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] build 18-May-2018 15:24:23 or: -c --help [cmd1 cmd2 ...] build 18-May-2018 15:24:23 or: -c --help-commands build 18-May-2018 15:24:23 or: -c cmd --help build 18-May-2018 15:24:23 build 18-May-2018 15:24:23 error: invalid command 'bdist_wheel' build 18-May-2018 15:24:23 build 18-May-2018 15:24:23 ---------------------------------------- build 18-May-2018 15:24:23 Running setup.py clean for PyYAML build 18-May-2018 15:24:23  Failed building wheel for PyYAML build 18-May-2018 15:24:23 Failed to build PyYAML build 18-May-2018 15:24:23 Installing collected packages: enum34, pika, PyYAML, certifi, chardet, idna, urllib3, requests, pyclowder build 18-May-2018 15:24:23 Running setup.py install for PyYAML: started build 18-May-2018 15:24:23 Running setup.py install for PyYAML: finished with status 'done' build 18-May-2018 15:24:23 Running setup.py install for pyclowder: started build 18-May-2018 15:24:24 Running setup.py install for pyclowder: finished with status 'done' build 18-May-2018 15:24:24 Successfully installed PyYAML-3.12 certifi-2018.4.16 chardet-3.0.4 enum34-1.1.6 idna-2.6 pika-0.11.2 pyclowder-2.0.3 requests-2.18.4 urllib3-1.22 build 18-May-2018 15:24:24 You are using pip version 8.1.1, however version 10.0.1 is available. build 18-May-2018 15:24:24 You should consider upgrading via the 'pip install --upgrade pip' command. build 18-May-2018 15:24:25 Removing intermediate container 09f524964190 build 18-May-2018 15:24:25 ---> b6bf3ecc8c99 build 18-May-2018 15:24:25 Step 7/8 : WORKDIR /home/clowder build 18-May-2018 15:24:25 Removing intermediate container 56d6edb912e7 build 18-May-2018 15:24:25 ---> d52224ef3d23 build 18-May-2018 15:24:25 Step 8/8 : CMD python "./${MAIN_SCRIPT}" build 18-May-2018 15:24:26 ---> Running in f7679f5ca0f9 build 18-May-2018 15:24:26 Removing intermediate container f7679f5ca0f9 build 18-May-2018 15:24:26 ---> 3170088bf4a2 build 18-May-2018 15:24:26 Successfully built 3170088bf4a2 build 18-May-2018 15:24:26 Successfully tagged clowder/pyclowder:latest build 18-May-2018 15:24:26 Sending build context to Docker daemon 210.4kB build 18-May-2018 15:24:26 build 18-May-2018 15:24:26 Step 1/6 : FROM clowder/pyclowder build 18-May-2018 15:24:26 ---> 3170088bf4a2 build 18-May-2018 15:24:26 Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 18-May-2018 15:24:26 ---> Running in 67e2a7187ccd build 18-May-2018 15:24:27 Removing intermediate container 67e2a7187ccd build 18-May-2018 15:24:27 ---> c94319bb111e build 18-May-2018 15:24:27 Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 18-May-2018 15:24:27 ---> Running in b7159d683b60 build 18-May-2018 15:24:27 Removing intermediate container b7159d683b60 build 18-May-2018 15:24:27 ---> 6271eb436688 build 18-May-2018 15:24:27 Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 18-May-2018 15:24:27 ---> Running in 96799fbf38e0 build 18-May-2018 15:24:28 Removing intermediate container 96799fbf38e0 build 18-May-2018 15:24:28 ---> 9e414d938145 build 18-May-2018 15:24:28 Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 18-May-2018 15:24:28 ---> Running in 956b90fa5882 build 18-May-2018 15:24:29 Removing intermediate container 956b90fa5882 build 18-May-2018 15:24:29 ---> f6d8d173ce9c build 18-May-2018 15:24:29 Step 6/6 : ONBUILD ADD . /home/clowder/ build 18-May-2018 15:24:29 ---> Running in bccfca437e19 build 18-May-2018 15:24:29 Removing intermediate container bccfca437e19 build 18-May-2018 15:24:29 ---> 2f397af05bda build 18-May-2018 15:24:29 Successfully built 2f397af05bda build 18-May-2018 15:24:29 Successfully tagged clowder/pyclowder:onbuild build 18-May-2018 15:24:29 Sending build context to Docker daemon 12.29kB build 18-May-2018 15:24:29 build 18-May-2018 15:24:29 Step 1/5 : FROM clowder/pyclowder:onbuild build 18-May-2018 15:24:29 # Executing 5 build triggers build 18-May-2018 15:24:30 ---> Running in 40a9ae2fdd4d build 18-May-2018 15:24:31 Removing intermediate container 40a9ae2fdd4d build 18-May-2018 15:24:32 ---> Running in bc016801a588 build 18-May-2018 15:24:33 Removing intermediate container bc016801a588 build 18-May-2018 15:24:34 ---> 97da653deae3 build 18-May-2018 15:24:34 Step 2/5 : ENV MAIN_SCRIPT="binary_extractor.py" RABBITMQ_QUEUE="" IMAGE_BINARY="" IMAGE_TYPE="" IMAGE_THUMBNAIL_COMMAND="" IMAGE_PREVIEW_COMMAND="" PREVIEW_BINARY="" PREVIEW_TYPE="" PREVIEW_COMMAND="" build 18-May-2018 15:24:34 ---> Running in 680ce0392247 build 18-May-2018 15:24:34 Removing intermediate container 680ce0392247 build 18-May-2018 15:24:34 ---> c28a5ba9a8a8 build 18-May-2018 15:24:34 Step 3/5 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 18-May-2018 15:24:35 ---> Running in 1e917b8faa12 build 18-May-2018 15:24:35 Removing intermediate container 1e917b8faa12 build 18-May-2018 15:24:35 ---> d76af5667807 build 18-May-2018 15:24:35 Step 4/5 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 18-May-2018 15:24:35 ---> Running in 49ec513f4e3a build 18-May-2018 15:24:35 Removing intermediate container 49ec513f4e3a build 18-May-2018 15:24:35 ---> b75424abf74e build 18-May-2018 15:24:35 Step 5/5 : ONBUILD COPY extractor_info.json /home/clowder/ build 18-May-2018 15:24:35 ---> Running in ef985e41be00 build 18-May-2018 15:24:36 Removing intermediate container ef985e41be00 build 18-May-2018 15:24:36 ---> fb97999f9009 build 18-May-2018 15:24:36 Successfully built fb97999f9009 build 18-May-2018 15:24:36 Successfully tagged clowder/extractors-binary-preview:onbuild build 18-May-2018 15:24:36 Sending build context to Docker daemon 9.216kB build 18-May-2018 15:24:36 build 18-May-2018 15:24:36 Step 1/2 : FROM clowder/pyclowder:onbuild build 18-May-2018 15:24:36 # Executing 5 build triggers build 18-May-2018 15:24:37 ---> Running in e71ac9f1074a build 18-May-2018 15:24:38 Removing intermediate container e71ac9f1074a build 18-May-2018 15:24:39 ---> Running in 89935cbaf6b9 build 18-May-2018 15:24:40 Removing intermediate container 89935cbaf6b9 build 18-May-2018 15:24:40 ---> a7a68bba9b42 build 18-May-2018 15:24:40 Step 2/2 : ENV MAIN_SCRIPT="wordcount.py" build 18-May-2018 15:24:40 ---> Running in 97920de23399 build 18-May-2018 15:24:41 Removing intermediate container 97920de23399 build 18-May-2018 15:24:41 ---> eed845b0de35 build 18-May-2018 15:24:41 Successfully built eed845b0de35 build 18-May-2018 15:24:41 Successfully tagged clowder/extractors-wordcount:latest simple 18-May-2018 15:24:41 Finished task 'docker build' with result: Success simple 18-May-2018 15:24:41 Starting task 'docker push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 18-May-2018 15:24:41 Beginning to execute external process for build 'Clowder - pyclowder2 - SYN-63-Remove-data-from-geoserver - Default Job #1 (CATS-PYC274-JOB1-1)'\n ... running command line: \n/bin/sh release.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC274-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=SYN-63-Remove-data-from-geoserver\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_planRepository_1_branchDisplayName=SYN-63-Remove-data-from-geoserver\nbamboo_repository_revision_number=5cf15e8c113145765727b74cc0b6be3319ee1739\nbamboo_repository_160727082_git_branch=SYN-63-Remove-data-from-geoserver\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC274-JOB1-1\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC274-JOB1\nbamboo_planRepository_1_name=pyclowder2\nbamboo_buildKey=CATS-PYC274-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=SYN-63-Remove-data-from-geoserver\nbamboo_planRepository_name=pyclowder2\nbamboo_buildNumber=1\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC274-JOB1-1\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_agentId=143032321\nbamboo_planName=Clowder - pyclowder2 - SYN-63-Remove-data-from-geoserver\nbamboo_shortPlanKey=PYC274\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_shortJobKey=JOB1\nbamboo_planRepository_revision=5cf15e8c113145765727b74cc0b6be3319ee1739\nbamboo_buildTimeStamp=2018-05-18T15:23:46.431-05:00\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_3=/home/bamboo/bamboo-agent-home/temp/CATS-PYC274-JOB1-1-ScriptBuildTask-5661017566155813445.sh\nbamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_2=/bin/sh docker.sh\nbamboo_repository_git_branch=SYN-63-Remove-data-from-geoserver\nbamboo_buildResultKey=CATS-PYC274-JOB1-1\nbamboo_repository_branch_name=SYN-63-Remove-data-from-geoserver\nbamboo_buildPlanName=Clowder - pyclowder2 - SYN-63-Remove-data-from-geoserver - Default Job\nbamboo_planRepository_1_revision=5cf15e8c113145765727b74cc0b6be3319ee1739\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=pyclowder2\nbamboo_repository_160727082_name=pyclowder2\nbamboo_repository_160727082_revision_number=5cf15e8c113145765727b74cc0b6be3319ee1739\nbamboo_buildFailed=false\nbamboo_repository_160727082_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_branch=SYN-63-Remove-data-from-geoserver\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_planRepository_branchDisplayName=SYN-63-Remove-data-from-geoserver\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=SYN-63-Remove-data-from-geoserver\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_repository_160727082_branch_name=SYN-63-Remove-data-from-geoserver\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-160530513\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC274-JOB1\nbamboo_planKey=CATS-PYC274\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_repository_160727082_git_username=\nbamboo_planRepository_1_branchName=SYN-63-Remove-data-from-geoserver\n build 18-May-2018 15:24:41 Sending build context to Docker daemon 212kB build 18-May-2018 15:24:41 build 18-May-2018 15:24:41 Step 1/8 : FROM ubuntu:16.04 build 18-May-2018 15:24:41 ---> 0b1edfbffd27 build 18-May-2018 15:24:41 Step 2/8 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="https://clowder.ncsa.illinois.edu/extractors" MAIN_SCRIPT="" build 18-May-2018 15:24:41 ---> Using cache build 18-May-2018 15:24:41 ---> 1033a5c4a741 build 18-May-2018 15:24:41 Step 3/8 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* build 18-May-2018 15:24:41 ---> Using cache build 18-May-2018 15:24:41 ---> 608fb22bd37e build 18-May-2018 15:24:41 Step 4/8 : COPY pyclowder /tmp/pyclowder/pyclowder build 18-May-2018 15:24:41 ---> Using cache build 18-May-2018 15:24:41 ---> ae4cf62d650d build 18-May-2018 15:24:41 Step 5/8 : COPY setup.py description.rst /tmp/pyclowder/ build 18-May-2018 15:24:41 ---> Using cache build 18-May-2018 15:24:41 ---> 39f72306451b build 18-May-2018 15:24:41 Step 6/8 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder build 18-May-2018 15:24:41 ---> Using cache build 18-May-2018 15:24:41 ---> b6bf3ecc8c99 build 18-May-2018 15:24:41 Step 7/8 : WORKDIR /home/clowder build 18-May-2018 15:24:41 ---> Using cache build 18-May-2018 15:24:41 ---> d52224ef3d23 build 18-May-2018 15:24:41 Step 8/8 : CMD python "./${MAIN_SCRIPT}" build 18-May-2018 15:24:41 ---> Using cache build 18-May-2018 15:24:41 ---> 3170088bf4a2 build 18-May-2018 15:24:41 Successfully built 3170088bf4a2 build 18-May-2018 15:24:41 Successfully tagged clowder/pyclowder:latest build 18-May-2018 15:24:41 Sending build context to Docker daemon 210.4kB build 18-May-2018 15:24:41 build 18-May-2018 15:24:41 Step 1/6 : FROM clowder/pyclowder build 18-May-2018 15:24:41 ---> 3170088bf4a2 build 18-May-2018 15:24:41 Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 18-May-2018 15:24:41 ---> Using cache build 18-May-2018 15:24:41 ---> c94319bb111e build 18-May-2018 15:24:41 Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 18-May-2018 15:24:41 ---> Using cache build 18-May-2018 15:24:41 ---> 6271eb436688 build 18-May-2018 15:24:41 Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 18-May-2018 15:24:41 ---> Using cache build 18-May-2018 15:24:41 ---> 9e414d938145 build 18-May-2018 15:24:41 Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 18-May-2018 15:24:41 ---> Using cache build 18-May-2018 15:24:41 ---> f6d8d173ce9c build 18-May-2018 15:24:41 Step 6/6 : ONBUILD ADD . /home/clowder/ build 18-May-2018 15:24:41 ---> Using cache build 18-May-2018 15:24:41 ---> 2f397af05bda build 18-May-2018 15:24:41 Successfully built 2f397af05bda build 18-May-2018 15:24:41 Successfully tagged clowder/pyclowder:onbuild build 18-May-2018 15:24:41 Sending build context to Docker daemon 12.29kB build 18-May-2018 15:24:41 build 18-May-2018 15:24:41 Step 1/5 : FROM clowder/pyclowder:onbuild build 18-May-2018 15:24:41 # Executing 5 build triggers build 18-May-2018 15:24:41 ---> Using cache build 18-May-2018 15:24:41 ---> Using cache build 18-May-2018 15:24:41 ---> Using cache build 18-May-2018 15:24:41 ---> Using cache build 18-May-2018 15:24:41 ---> Using cache build 18-May-2018 15:24:41 ---> 97da653deae3 build 18-May-2018 15:24:41 Step 2/5 : ENV MAIN_SCRIPT="binary_extractor.py" RABBITMQ_QUEUE="" IMAGE_BINARY="" IMAGE_TYPE="" IMAGE_THUMBNAIL_COMMAND="" IMAGE_PREVIEW_COMMAND="" PREVIEW_BINARY="" PREVIEW_TYPE="" PREVIEW_COMMAND="" build 18-May-2018 15:24:41 ---> Using cache build 18-May-2018 15:24:41 ---> c28a5ba9a8a8 build 18-May-2018 15:24:41 Step 3/5 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 18-May-2018 15:24:41 ---> Using cache build 18-May-2018 15:24:41 ---> d76af5667807 build 18-May-2018 15:24:41 Step 4/5 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 18-May-2018 15:24:41 ---> Using cache build 18-May-2018 15:24:41 ---> b75424abf74e build 18-May-2018 15:24:41 Step 5/5 : ONBUILD COPY extractor_info.json /home/clowder/ build 18-May-2018 15:24:41 ---> Using cache build 18-May-2018 15:24:41 ---> fb97999f9009 build 18-May-2018 15:24:41 Successfully built fb97999f9009 build 18-May-2018 15:24:41 Successfully tagged clowder/extractors-binary-preview:onbuild build 18-May-2018 15:24:41 Sending build context to Docker daemon 9.216kB build 18-May-2018 15:24:41 build 18-May-2018 15:24:41 Step 1/2 : FROM clowder/pyclowder:onbuild build 18-May-2018 15:24:41 # Executing 5 build triggers build 18-May-2018 15:24:41 ---> Using cache build 18-May-2018 15:24:41 ---> Using cache build 18-May-2018 15:24:41 ---> Using cache build 18-May-2018 15:24:41 ---> Using cache build 18-May-2018 15:24:41 ---> Using cache build 18-May-2018 15:24:41 ---> a7a68bba9b42 build 18-May-2018 15:24:41 Step 2/2 : ENV MAIN_SCRIPT="wordcount.py" build 18-May-2018 15:24:41 ---> Using cache build 18-May-2018 15:24:41 ---> eed845b0de35 build 18-May-2018 15:24:41 Successfully built eed845b0de35 build 18-May-2018 15:24:41 Successfully tagged clowder/extractors-wordcount:latest simple 18-May-2018 15:24:41 Finished task 'docker push' with result: Success simple 18-May-2018 15:24:41 Starting task 'test results' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit' simple 18-May-2018 15:24:41 Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC274-JOB1... simple 18-May-2018 15:24:41 Finished task 'test results' with result: Success simple 18-May-2018 15:24:41 Running post build plugin 'Docker Container Cleanup' simple 18-May-2018 15:24:41 Running post build plugin 'NCover Results Collector' simple 18-May-2018 15:24:41 Running post build plugin 'Clover Results Collector' simple 18-May-2018 15:24:41 Running post build plugin 'npm Cache Cleanup' simple 18-May-2018 15:24:41 Running post build plugin 'Artifact Copier' simple 18-May-2018 15:24:41 Finalising the build... simple 18-May-2018 15:24:41 Stopping timer. simple 18-May-2018 15:24:41 Build CATS-PYC274-JOB1-1 completed. simple 18-May-2018 15:24:42 Running on server: post build plugin 'NCover Results Collector' simple 18-May-2018 15:24:42 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 18-May-2018 15:24:42 Running on server: post build plugin 'Clover Delta Calculator' simple 18-May-2018 15:24:42 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 18-May-2018 15:24:42 All post build plugins have finished simple 18-May-2018 15:24:42 Generating build results summary... simple 18-May-2018 15:24:42 Saving build results to disk... simple 18-May-2018 15:24:42 Logging substituted variables... simple 18-May-2018 15:24:42 Indexing build results... simple 18-May-2018 15:24:42 Finished building CATS-PYC274-JOB1-1.