simple	26-Jul-2018 11:11:45	Build Clowder - pyclowder2 - boxhack - Default Job #3 (CATS-PYC280-JOB1-3) started building on agent buildserver-2.os.ncsa.edu
simple	26-Jul-2018 11:11:45	Remote agent on host buildserver-2.os.ncsa.edu
simple	26-Jul-2018 11:11:48	Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC280-JOB1
simple	26-Jul-2018 11:11:48	Executing build Clowder - pyclowder2 - boxhack - Default Job #3 (CATS-PYC280-JOB1-3)
simple	26-Jul-2018 11:11:48	Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
simple	26-Jul-2018 11:11:48	Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC280-JOB1
simple	26-Jul-2018 11:11:48	Updating source code to revision: aece55881bff026858b4167c55d068c6ba35772f
simple	26-Jul-2018 11:11:48	Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC280-JOB1/.git'.
simple	26-Jul-2018 11:11:48	Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC280-JOB1/.git/
simple	26-Jul-2018 11:11:48	Fetching 'refs/heads/boxhack' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git'. Will try to do a shallow fetch.
simple	26-Jul-2018 11:11:48	Warning: Permanently added '[127.0.0.1]:34156' (RSA) to the list of known hosts.
simple	26-Jul-2018 11:11:48	From ssh://127.0.0.1:34156/cats/pyclowder2
simple	26-Jul-2018 11:11:48	 * [new branch]      boxhack    -> boxhack
simple	26-Jul-2018 11:11:48	Checking out revision aece55881bff026858b4167c55d068c6ba35772f.
simple	26-Jul-2018 11:11:48	Switched to branch 'boxhack'
simple	26-Jul-2018 11:11:48	Updated source code to revision: aece55881bff026858b4167c55d068c6ba35772f
simple	26-Jul-2018 11:11:48	Finished task 'Checkout Default Repository' with result: Success
simple	26-Jul-2018 11:11:48	Running pre-build action: VCS Version Collector
simple	26-Jul-2018 11:11:57	Starting task 'pytest' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
command	26-Jul-2018 11:11:57	Beginning to execute external process for build 'Clowder - pyclowder2 - boxhack - Default Job #3 (CATS-PYC280-JOB1-3)'\n ... running command line: \n/home/bamboo/bamboo-agent-home/temp/CATS-PYC280-JOB1-3-ScriptBuildTask-4816640491652029895.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC280-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=boxhack\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_planRepository_1_branchDisplayName=boxhack\nbamboo_repository_revision_number=aece55881bff026858b4167c55d068c6ba35772f\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC280-JOB1-3\nbamboo_repository_162758672_git_branch=boxhack\nbamboo_repository_162758672_git_username=\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC280-JOB1\nbamboo_planRepository_1_name=pyclowder2\nbamboo_buildKey=CATS-PYC280-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=boxhack\nbamboo_planRepository_name=pyclowder2\nbamboo_repository_162758672_previous_revision_number=5c52ad2349c439c1635e4af936a9913c249131cc\nbamboo_buildNumber=3\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC280-JOB1-3\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_agentId=140673028\nbamboo_planName=Clowder - pyclowder2 - boxhack\nbamboo_shortPlanKey=PYC280\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_shortJobKey=JOB1\nbamboo_planRepository_revision=aece55881bff026858b4167c55d068c6ba35772f\nbamboo_repository_162758672_name=pyclowder2\nbamboo_buildTimeStamp=2018-07-26T11:11:37.369-05:00\nbamboo_repository_previous_revision_number=5c52ad2349c439c1635e4af936a9913c249131cc\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_planRepository_previousRevision=5c52ad2349c439c1635e4af936a9913c249131cc\nbamboo_repository_git_branch=boxhack\nbamboo_buildResultKey=CATS-PYC280-JOB1-3\nbamboo_repository_branch_name=boxhack\nbamboo_repository_162758672_revision_number=aece55881bff026858b4167c55d068c6ba35772f\nbamboo_buildPlanName=Clowder - pyclowder2 - boxhack - Default Job\nbamboo_planRepository_1_revision=aece55881bff026858b4167c55d068c6ba35772f\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=pyclowder2\nbamboo_repository_162758672_branch_name=boxhack\nbamboo_buildFailed=false\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_branch=boxhack\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=5c52ad2349c439c1635e4af936a9913c249131cc\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_planRepository_branchDisplayName=boxhack\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=boxhack\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_repository_162758672_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-162562079\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC280-JOB1\nbamboo_planKey=CATS-PYC280\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_1_branchName=boxhack\n
build	26-Jul-2018 11:11:58	New python executable in /tmp/virtualenv/pyclowder2/bin/python2
build	26-Jul-2018 11:11:58	Also creating executable in /tmp/virtualenv/pyclowder2/bin/python
build	26-Jul-2018 11:12:00	Installing setuptools, pkg_resources, pip, wheel...done.
build	26-Jul-2018 11:12:00	Running virtualenv with interpreter /usr/bin/python2
build	26-Jul-2018 11:12:00	Collecting enum34==1.1.6 (from -r requirements.txt (line 1))
build	26-Jul-2018 11:12:00	  Using cached https://files.pythonhosted.org/packages/c5/db/e56e6b4bbac7c4a06de1c50de6fe1ef3810018ae11732a50f15f62c7d050/enum34-1.1.6-py2-none-any.whl
build	26-Jul-2018 11:12:00	Collecting pika==0.11.2 (from -r requirements.txt (line 2))
build	26-Jul-2018 11:12:00	  Using cached https://files.pythonhosted.org/packages/76/b4/0ada6918ac79ce4d8d45d0ba436ee21a1ef685047fb1dde4d2de0178b327/pika-0.11.2-py2.py3-none-any.whl
build	26-Jul-2018 11:12:00	Collecting PyYAML==3.12 (from -r requirements.txt (line 3))
build	26-Jul-2018 11:12:01	Collecting requests==2.18.4 (from -r requirements.txt (line 4))
build	26-Jul-2018 11:12:01	  Using cached https://files.pythonhosted.org/packages/49/df/50aa1999ab9bde74656c2919d9c0c085fd2b3775fd3eca826012bef76d8c/requests-2.18.4-py2.py3-none-any.whl
build	26-Jul-2018 11:12:01	Collecting wheel==0.24.0 (from -r requirements.txt (line 5))
build	26-Jul-2018 11:12:01	  Using cached https://files.pythonhosted.org/packages/e8/14/eaaac12b0432c984a27ad0050a5a0bedc6135df35a0f5f1f35228faf12d4/wheel-0.24.0-py2.py3-none-any.whl
build	26-Jul-2018 11:12:01	Collecting urllib3==1.22 (from -r requirements.txt (line 6))
build	26-Jul-2018 11:12:01	  Using cached https://files.pythonhosted.org/packages/63/cb/6965947c13a94236f6d4b8223e21beb4d576dc72e8130bd7880f600839b8/urllib3-1.22-py2.py3-none-any.whl
build	26-Jul-2018 11:12:01	Collecting pytest==3.0.3 (from -r requirements.txt (line 7))
build	26-Jul-2018 11:12:01	  Using cached https://files.pythonhosted.org/packages/a4/e9/bf75a9a91c4a545bad262937d1defa90d95ac912118a706406e21aef889a/pytest-3.0.3-py2.py3-none-any.whl
build	26-Jul-2018 11:12:01	Collecting pytest-pep8==1.0.6 (from -r requirements.txt (line 8))
build	26-Jul-2018 11:12:01	Collecting certifi>=2017.4.17 (from requests==2.18.4->-r requirements.txt (line 4))
build	26-Jul-2018 11:12:01	  Using cached https://files.pythonhosted.org/packages/7c/e6/92ad559b7192d846975fc916b65f667c7b8c3a32bea7372340bfe9a15fa5/certifi-2018.4.16-py2.py3-none-any.whl
build	26-Jul-2018 11:12:01	Collecting chardet<3.1.0,>=3.0.2 (from requests==2.18.4->-r requirements.txt (line 4))
build	26-Jul-2018 11:12:01	  Using cached https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl
build	26-Jul-2018 11:12:01	Collecting idna<2.7,>=2.5 (from requests==2.18.4->-r requirements.txt (line 4))
build	26-Jul-2018 11:12:01	  Using cached https://files.pythonhosted.org/packages/27/cc/6dd9a3869f15c2edfab863b992838277279ce92663d334df9ecf5106f5c6/idna-2.6-py2.py3-none-any.whl
build	26-Jul-2018 11:12:01	Collecting py>=1.4.29 (from pytest==3.0.3->-r requirements.txt (line 7))
build	26-Jul-2018 11:12:01	  Using cached https://files.pythonhosted.org/packages/f3/bd/83369ff2dee18f22f27d16b78dd651e8939825af5f8b0b83c38729069962/py-1.5.4-py2.py3-none-any.whl
build	26-Jul-2018 11:12:01	Collecting pep8>=1.3 (from pytest-pep8==1.0.6->-r requirements.txt (line 8))
build	26-Jul-2018 11:12:01	  Using cached https://files.pythonhosted.org/packages/42/3f/669429ce58de2c22d8d2c542752e137ec4b9885fff398d3eceb1a7f5acb4/pep8-1.7.1-py2.py3-none-any.whl
build	26-Jul-2018 11:12:01	Collecting pytest-cache (from pytest-pep8==1.0.6->-r requirements.txt (line 8))
build	26-Jul-2018 11:12:01	Collecting execnet>=1.1.dev1 (from pytest-cache->pytest-pep8==1.0.6->-r requirements.txt (line 8))
build	26-Jul-2018 11:12:01	  Using cached https://files.pythonhosted.org/packages/f9/76/3343e69a2a1602052f587898934e5fea395d22310d39c07955596597227c/execnet-1.5.0-py2.py3-none-any.whl
build	26-Jul-2018 11:12:01	Collecting apipkg>=1.4 (from execnet>=1.1.dev1->pytest-cache->pytest-pep8==1.0.6->-r requirements.txt (line 8))
build	26-Jul-2018 11:12:01	  Using cached https://files.pythonhosted.org/packages/67/08/4815a09603fc800209431bec5b8bd2acf2f95abdfb558a44a42507fb94da/apipkg-1.5-py2.py3-none-any.whl
build	26-Jul-2018 11:12:01	Installing collected packages: enum34, pika, PyYAML, certifi, chardet, idna, urllib3, requests, wheel, py, pytest, pep8, apipkg, execnet, pytest-cache, pytest-pep8
build	26-Jul-2018 11:12:02	  Found existing installation: wheel 0.31.1
build	26-Jul-2018 11:12:02	    Uninstalling wheel-0.31.1:
build	26-Jul-2018 11:12:02	      Successfully uninstalled wheel-0.31.1
build	26-Jul-2018 11:12:02	Successfully installed PyYAML-3.12 apipkg-1.5 certifi-2018.4.16 chardet-3.0.4 enum34-1.1.6 execnet-1.5.0 idna-2.6 pep8-1.7.1 pika-0.11.2 py-1.5.4 pytest-3.0.3 pytest-cache-1.0 pytest-pep8-1.0.6 requests-2.18.4 urllib3-1.22 wheel-0.24.0
build	26-Jul-2018 11:12:02	============================= test session starts ==============================
build	26-Jul-2018 11:12:02	platform linux2 -- Python 2.7.12, pytest-3.0.3, py-1.5.4, pluggy-0.4.0
build	26-Jul-2018 11:12:02	rootdir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC280-JOB1, inifile: setup.cfg
build	26-Jul-2018 11:12:02	plugins: pep8-1.0.6
build	26-Jul-2018 11:12:02	collected 16 items
build	26-Jul-2018 11:12:02	
build	26-Jul-2018 11:12:02	setup.py .
build	26-Jul-2018 11:12:02	docs/source/conf.py .
build	26-Jul-2018 11:12:02	pyclowder/__init__.py .
build	26-Jul-2018 11:12:02	pyclowder/client.py .
build	26-Jul-2018 11:12:02	pyclowder/collections.py .
build	26-Jul-2018 11:12:02	pyclowder/connectors.py F
build	26-Jul-2018 11:12:02	pyclowder/datasets.py .
build	26-Jul-2018 11:12:02	pyclowder/extractors.py .
build	26-Jul-2018 11:12:02	pyclowder/files.py F
build	26-Jul-2018 11:12:02	pyclowder/geostreams.py .
build	26-Jul-2018 11:12:02	pyclowder/sections.py .
build	26-Jul-2018 11:12:02	pyclowder/utils.py .
build	26-Jul-2018 11:12:02	sample-extractors/binary-preview/binary_extractor.py .
build	26-Jul-2018 11:12:02	sample-extractors/echo/echo.py .
build	26-Jul-2018 11:12:02	sample-extractors/wordcount/wordcount.py .
build	26-Jul-2018 11:12:02	tests/clientTest.py .
build	26-Jul-2018 11:12:02	
build	26-Jul-2018 11:12:02	 generated xml file: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC280-JOB1/test-reports/results.xml 
build	26-Jul-2018 11:12:02	=================================== FAILURES ===================================
build	26-Jul-2018 11:12:02	__________________________________ PEP8-check __________________________________
build	26-Jul-2018 11:12:02	/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC280-JOB1/pyclowder/connectors.py:669:1: W293 blank line contains whitespace
build	26-Jul-2018 11:12:02	
build	26-Jul-2018 11:12:02	^
build	26-Jul-2018 11:12:02	
build	26-Jul-2018 11:12:02	__________________________________ PEP8-check __________________________________
build	26-Jul-2018 11:12:02	/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC280-JOB1/pyclowder/files.py:207:1: E302 expected 2 blank lines, found 1
build	26-Jul-2018 11:12:02	def upload_metadata(connector, host, metadataTemplate, key, fileid, metadata):
build	26-Jul-2018 11:12:02	^
build	26-Jul-2018 11:12:02	/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC280-JOB1/pyclowder/files.py:215:26: E231 missing whitespace after ','
build	26-Jul-2018 11:12:02	    r = requests.post(url,data=data,headers=headers)
build	26-Jul-2018 11:12:02	                         ^
build	26-Jul-2018 11:12:02	/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC280-JOB1/pyclowder/files.py:215:36: E231 missing whitespace after ','
build	26-Jul-2018 11:12:02	    r = requests.post(url,data=data,headers=headers)
build	26-Jul-2018 11:12:02	                                   ^
build	26-Jul-2018 11:12:02	/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC280-JOB1/pyclowder/files.py:225:1: E302 expected 2 blank lines, found 1
build	26-Jul-2018 11:12:02	def upload_preview(connector, host, key, fileid, previewfile, previewmetadata, preview_mimetype=None):
build	26-Jul-2018 11:12:02	^
build	26-Jul-2018 11:12:02	
build	26-Jul-2018 11:12:02	===================== 2 failed, 14 passed in 0.32 seconds ======================
simple	26-Jul-2018 11:12:02	Failing task since return code of [/home/bamboo/bamboo-agent-home/temp/CATS-PYC280-JOB1-3-ScriptBuildTask-4816640491652029895.sh] was 1 while expected 0
simple	26-Jul-2018 11:12:02	Finished task 'pytest' with result: Failed
simple	26-Jul-2018 11:12:02	Starting task 'test results' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit'
simple	26-Jul-2018 11:12:02	Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC280-JOB1...
simple	26-Jul-2018 11:12:02	Failing task since 2 failing test cases were found.
simple	26-Jul-2018 11:12:02	Finished task 'test results' with result: Failed
simple	26-Jul-2018 11:12:02	Running post build plugin 'Docker Container Cleanup'
simple	26-Jul-2018 11:12:02	Running post build plugin 'NCover Results Collector'
simple	26-Jul-2018 11:12:02	Running post build plugin 'Clover Results Collector'
simple	26-Jul-2018 11:12:02	Running post build plugin 'npm Cache Cleanup'
simple	26-Jul-2018 11:12:02	Running post build plugin 'Artifact Copier'
simple	26-Jul-2018 11:12:02	Finalising the build...
simple	26-Jul-2018 11:12:02	Stopping timer.
simple	26-Jul-2018 11:12:02	Build CATS-PYC280-JOB1-3 completed.
simple	26-Jul-2018 11:12:08	Running on server: post build plugin 'NCover Results Collector'
simple	26-Jul-2018 11:12:09	Running on server: post build plugin 'Build Hanging Detection Configuration'
simple	26-Jul-2018 11:12:09	Running on server: post build plugin 'Clover Delta Calculator'
simple	26-Jul-2018 11:12:09	Running on server: post build plugin 'Maven Dependencies Postprocessor'
simple	26-Jul-2018 11:12:09	All post build plugins have finished
simple	26-Jul-2018 11:12:09	Generating build results summary...
simple	26-Jul-2018 11:12:09	Saving build results to disk...
simple	26-Jul-2018 11:12:09	Logging substituted variables...
simple	26-Jul-2018 11:12:11	Indexing build results...
simple	26-Jul-2018 11:12:11	Finished building CATS-PYC280-JOB1-3.