simple 23-Apr-2019 17:29:50 Build Clowder - pyclowder2 - CATSPYC-19-add-anonymous-email-receiver-on-the-email-message - Default Job #1 (CATS-PYC296-JOB1-1) started building on agent buildserver-2.os.ncsa.edu simple 23-Apr-2019 17:29:50 Remote agent on host buildserver-2.os.ncsa.edu simple 23-Apr-2019 17:29:50 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC296-JOB1 simple 23-Apr-2019 17:29:50 Executing build Clowder - pyclowder2 - CATSPYC-19-add-anonymous-email-receiver-on-the-email-message - Default Job #1 (CATS-PYC296-JOB1-1) simple 23-Apr-2019 17:29:50 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 23-Apr-2019 17:29:50 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC296-JOB1 simple 23-Apr-2019 17:29:50 Updating source code to revision: 7e8ea5b3b5c80bacdfca5069f13e77f255c47662 simple 23-Apr-2019 17:29:50 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC296-JOB1/.git'. simple 23-Apr-2019 17:29:50 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC296-JOB1/.git/ simple 23-Apr-2019 17:29:51 Fetching 'refs/heads/CATSPYC-19-add-anonymous-email-receiver-on-the-email-message' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git'. Will try to do a shallow fetch. simple 23-Apr-2019 17:29:51 Warning: Permanently added '[127.0.0.1]:42195' (RSA) to the list of known hosts. simple 23-Apr-2019 17:29:51 From ssh://127.0.0.1:42195/cats/pyclowder2 simple 23-Apr-2019 17:29:51 * [new branch] CATSPYC-19-add-anonymous-email-receiver-on-the-email-message -> CATSPYC-19-add-anonymous-email-receiver-on-the-email-message simple 23-Apr-2019 17:29:51 Checking out revision 7e8ea5b3b5c80bacdfca5069f13e77f255c47662. simple 23-Apr-2019 17:29:51 Switched to branch 'CATSPYC-19-add-anonymous-email-receiver-on-the-email-message' simple 23-Apr-2019 17:29:51 Updated source code to revision: 7e8ea5b3b5c80bacdfca5069f13e77f255c47662 simple 23-Apr-2019 17:29:51 Finished task 'Checkout Default Repository' with result: Success simple 23-Apr-2019 17:29:51 Running pre-build action: VCS Version Collector simple 23-Apr-2019 17:29:52 Starting task 'python 2 - pytest' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 23-Apr-2019 17:29:52 Beginning to execute external process for build 'Clowder - pyclowder2 - CATSPYC-19-add-anonymous-email-receiver-on-the-email-message - Default Job #1 (CATS-PYC296-JOB1-1)'\n ... running command line: \n/home/bamboo/bamboo-agent-home/temp/CATS-PYC296-JOB1-1-ScriptBuildTask-7142268027833148048.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC296-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=CATSPYC-19-add-anonymous-email-receiver-on-the-email-message\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_planRepository_1_branchDisplayName=CATSPYC-19-add-anonymous-email-receiver-on-the-email-message\nbamboo_repository_revision_number=7e8ea5b3b5c80bacdfca5069f13e77f255c47662\nbamboo_repository_170524691_branch_name=CATSPYC-19-add-anonymous-email-receiver-on-the-email-message\nbamboo_repository_170524691_revision_number=7e8ea5b3b5c80bacdfca5069f13e77f255c47662\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC296-JOB1-1\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC296-JOB1\nbamboo_planRepository_1_name=pyclowder2\nbamboo_buildKey=CATS-PYC296-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=CATSPYC-19-add-anonymous-email-receiver-on-the-email-message\nbamboo_repository_170524691_git_branch=CATSPYC-19-add-anonymous-email-receiver-on-the-email-message\nbamboo_planRepository_name=pyclowder2\nbamboo_buildNumber=1\nbamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC296-JOB1-1\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_agentId=140673028\nbamboo_planName=Clowder - 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Please upgrade your Python as Python 2.7 won't be maintained after that date. 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Collecting wheel==0.24.0 (from -r requirements.txt (line 5)) build 23-Apr-2019 17:29:56 Using cached https://files.pythonhosted.org/packages/e8/14/eaaac12b0432c984a27ad0050a5a0bedc6135df35a0f5f1f35228faf12d4/wheel-0.24.0-py2.py3-none-any.whl build 23-Apr-2019 17:29:56 Collecting urllib3==1.22 (from -r requirements.txt (line 6)) build 23-Apr-2019 17:29:56 Downloading https://files.pythonhosted.org/packages/63/cb/6965947c13a94236f6d4b8223e21beb4d576dc72e8130bd7880f600839b8/urllib3-1.22-py2.py3-none-any.whl (132kB) build 23-Apr-2019 17:29:56 Collecting pytest==3.0.3 (from -r requirements.txt (line 7)) build 23-Apr-2019 17:29:56 Downloading https://files.pythonhosted.org/packages/a4/e9/bf75a9a91c4a545bad262937d1defa90d95ac912118a706406e21aef889a/pytest-3.0.3-py2.py3-none-any.whl (169kB) build 23-Apr-2019 17:29:56 Collecting pytest-pep8==1.0.6 (from -r requirements.txt (line 8)) build 23-Apr-2019 17:29:56 Collecting certifi>=2017.4.17 (from requests==2.18.4->-r requirements.txt (line 4)) 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17:29:57 Using cached https://files.pythonhosted.org/packages/67/08/4815a09603fc800209431bec5b8bd2acf2f95abdfb558a44a42507fb94da/apipkg-1.5-py2.py3-none-any.whl build 23-Apr-2019 17:29:57 Installing collected packages: enum34, pika, PyYAML, certifi, chardet, idna, urllib3, requests, wheel, py, pytest, pep8, apipkg, execnet, pytest-cache, pytest-pep8 build 23-Apr-2019 17:29:58 Found existing installation: wheel 0.33.1 build 23-Apr-2019 17:29:58 Uninstalling wheel-0.33.1: build 23-Apr-2019 17:29:58 Successfully uninstalled wheel-0.33.1 build 23-Apr-2019 17:29:58 Successfully installed PyYAML-3.12 apipkg-1.5 certifi-2019.3.9 chardet-3.0.4 enum34-1.1.6 execnet-1.6.0 idna-2.6 pep8-1.7.1 pika-0.11.2 py-1.8.0 pytest-3.0.3 pytest-cache-1.0 pytest-pep8-1.0.6 requests-2.18.4 urllib3-1.22 wheel-0.24.0 build 23-Apr-2019 17:29:58 ============================= test session starts ============================== build 23-Apr-2019 17:29:58 platform linux2 -- Python 2.7.12, pytest-3.0.3, py-1.8.0, pluggy-0.4.0 build 23-Apr-2019 17:29:58 rootdir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC296-JOB1, inifile: setup.cfg build 23-Apr-2019 17:29:58 plugins: pep8-1.0.6 build 23-Apr-2019 17:29:58 collected 19 items build 23-Apr-2019 17:29:58 build 23-Apr-2019 17:29:58 setup.py . build 23-Apr-2019 17:29:58 docs/source/conf.py . build 23-Apr-2019 17:29:58 pyclowder/__init__.py . build 23-Apr-2019 17:29:58 pyclowder/client.py . build 23-Apr-2019 17:29:58 pyclowder/collections.py . build 23-Apr-2019 17:29:59 pyclowder/connectors.py . build 23-Apr-2019 17:29:59 pyclowder/datasets.py . build 23-Apr-2019 17:29:59 pyclowder/extractors.py . build 23-Apr-2019 17:29:59 pyclowder/files.py . build 23-Apr-2019 17:29:59 pyclowder/geostreams.py . build 23-Apr-2019 17:29:59 pyclowder/sections.py . build 23-Apr-2019 17:29:59 pyclowder/utils.py . build 23-Apr-2019 17:29:59 sample-extractors/binary-preview/binary_extractor.py . build 23-Apr-2019 17:29:59 sample-extractors/echo/echo.py . build 23-Apr-2019 17:29:59 sample-extractors/simple-extractor/simple_extractor.py . build 23-Apr-2019 17:29:59 sample-extractors/simple-r-extractor/r_extractor.py . build 23-Apr-2019 17:29:59 sample-extractors/wordcount/wordcount.py . build 23-Apr-2019 17:29:59 sample-extractors/wordcount-simple-extractor/wordcount.py . build 23-Apr-2019 17:29:59 tests/clientTest.py . build 23-Apr-2019 17:29:59 build 23-Apr-2019 17:29:59 - generated xml file: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC296-JOB1/test-reports/results-p2.xml - build 23-Apr-2019 17:29:59 ========================== 19 passed in 0.48 seconds =========================== simple 23-Apr-2019 17:29:59 Finished task 'python 2 - pytest' with result: Success simple 23-Apr-2019 17:29:59 Starting task 'python 3 - pytest' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 23-Apr-2019 17:29:59 Beginning to execute external process for build 'Clowder - pyclowder2 - CATSPYC-19-add-anonymous-email-receiver-on-the-email-message - Default Job #1 (CATS-PYC296-JOB1-1)'\n ... running command line: \n/home/bamboo/bamboo-agent-home/temp/CATS-PYC296-JOB1-1-ScriptBuildTask-8397302722315111294.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC296-JOB1\n ... using extra environment variables: 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build 23-Apr-2019 17:30:00 Already using interpreter /usr/bin/python3 build 23-Apr-2019 17:30:00 Using base prefix '/usr' build 23-Apr-2019 17:30:00 New python executable in /tmp/virtualenv/pyclowder2-p3/bin/python3 build 23-Apr-2019 17:30:00 Also creating executable in /tmp/virtualenv/pyclowder2-p3/bin/python build 23-Apr-2019 17:30:03 Installing setuptools, pkg_resources, pip, wheel...done. build 23-Apr-2019 17:30:03 Collecting enum34==1.1.6 (from -r requirements.txt (line 1)) build 23-Apr-2019 17:30:03 Using cached https://files.pythonhosted.org/packages/af/42/cb9355df32c69b553e72a2e28daee25d1611d2c0d9c272aa1d34204205b2/enum34-1.1.6-py3-none-any.whl build 23-Apr-2019 17:30:03 Collecting pika==0.11.2 (from -r requirements.txt (line 2)) build 23-Apr-2019 17:30:03 Using cached https://files.pythonhosted.org/packages/76/b4/0ada6918ac79ce4d8d45d0ba436ee21a1ef685047fb1dde4d2de0178b327/pika-0.11.2-py2.py3-none-any.whl build 23-Apr-2019 17:30:03 Collecting PyYAML==3.12 (from -r requirements.txt (line 3)) build 23-Apr-2019 17:30:04 Downloading https://files.pythonhosted.org/packages/4a/85/db5a2df477072b2902b0eb892feb37d88ac635d36245a72a6a69b23b383a/PyYAML-3.12.tar.gz (253kB) build 23-Apr-2019 17:30:04 Collecting requests==2.18.4 (from -r requirements.txt (line 4)) build 23-Apr-2019 17:30:04 Using cached https://files.pythonhosted.org/packages/49/df/50aa1999ab9bde74656c2919d9c0c085fd2b3775fd3eca826012bef76d8c/requests-2.18.4-py2.py3-none-any.whl build 23-Apr-2019 17:30:04 Collecting wheel==0.24.0 (from -r requirements.txt (line 5)) build 23-Apr-2019 17:30:04 Using cached https://files.pythonhosted.org/packages/e8/14/eaaac12b0432c984a27ad0050a5a0bedc6135df35a0f5f1f35228faf12d4/wheel-0.24.0-py2.py3-none-any.whl build 23-Apr-2019 17:30:04 Collecting urllib3==1.22 (from -r requirements.txt (line 6)) build 23-Apr-2019 17:30:04 Using cached 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'done' build 23-Apr-2019 17:30:06 Stored in directory: /home/bamboo/.cache/pip/wheels/03/05/65/bdc14f2c6e09e82ae3e0f13d021e1b6b2481437ea2f207df3f build 23-Apr-2019 17:30:06 Successfully built PyYAML build 23-Apr-2019 17:30:06 Installing collected packages: enum34, pika, PyYAML, certifi, urllib3, chardet, idna, requests, wheel, py, pytest, apipkg, execnet, pytest-cache, pep8, pytest-pep8 build 23-Apr-2019 17:30:07 Found existing installation: wheel 0.33.1 build 23-Apr-2019 17:30:07 Uninstalling wheel-0.33.1: build 23-Apr-2019 17:30:07 Successfully uninstalled wheel-0.33.1 build 23-Apr-2019 17:30:07 Successfully installed PyYAML-3.12 apipkg-1.5 certifi-2019.3.9 chardet-3.0.4 enum34-1.1.6 execnet-1.6.0 idna-2.6 pep8-1.7.1 pika-0.11.2 py-1.8.0 pytest-3.0.3 pytest-cache-1.0 pytest-pep8-1.0.6 requests-2.18.4 urllib3-1.22 wheel-0.24.0 build 23-Apr-2019 17:30:07 ============================= test session starts ============================== build 23-Apr-2019 17:30:07 platform linux -- Python 3.5.2, pytest-3.0.3, py-1.8.0, pluggy-0.4.0 build 23-Apr-2019 17:30:07 rootdir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC296-JOB1, inifile: setup.cfg build 23-Apr-2019 17:30:07 plugins: pep8-1.0.6 build 23-Apr-2019 17:30:07 collected 19 items build 23-Apr-2019 17:30:07 build 23-Apr-2019 17:30:07 setup.py . build 23-Apr-2019 17:30:07 docs/source/conf.py . build 23-Apr-2019 17:30:07 pyclowder/__init__.py . build 23-Apr-2019 17:30:07 pyclowder/client.py . build 23-Apr-2019 17:30:08 pyclowder/collections.py . build 23-Apr-2019 17:30:08 pyclowder/connectors.py . build 23-Apr-2019 17:30:08 pyclowder/datasets.py . build 23-Apr-2019 17:30:08 pyclowder/extractors.py . build 23-Apr-2019 17:30:08 pyclowder/files.py . build 23-Apr-2019 17:30:08 pyclowder/geostreams.py . build 23-Apr-2019 17:30:08 pyclowder/sections.py . build 23-Apr-2019 17:30:08 pyclowder/utils.py . build 23-Apr-2019 17:30:08 sample-extractors/binary-preview/binary_extractor.py . build 23-Apr-2019 17:30:08 sample-extractors/echo/echo.py . build 23-Apr-2019 17:30:08 sample-extractors/simple-extractor/simple_extractor.py . build 23-Apr-2019 17:30:08 sample-extractors/simple-r-extractor/r_extractor.py . build 23-Apr-2019 17:30:08 sample-extractors/wordcount/wordcount.py . build 23-Apr-2019 17:30:08 sample-extractors/wordcount-simple-extractor/wordcount.py . build 23-Apr-2019 17:30:08 tests/clientTest.py . build 23-Apr-2019 17:30:08 build 23-Apr-2019 17:30:08 - generated xml file: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC296-JOB1/test-reports/results-p3.xml - build 23-Apr-2019 17:30:08 ========================== 19 passed in 0.57 seconds =========================== simple 23-Apr-2019 17:30:08 Finished task 'python 3 - pytest' with result: Success simple 23-Apr-2019 17:30:08 Starting task 'docker build' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 23-Apr-2019 17:30:08 Beginning to execute external process for build 'Clowder - pyclowder2 - CATSPYC-19-add-anonymous-email-receiver-on-the-email-message - Default Job #1 (CATS-PYC296-JOB1-1)'\n ... running command line: \n/bin/sh docker.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC296-JOB1\n ... using extra environment variables: 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Job\nbamboo_planRepository_1_revision=7e8ea5b3b5c80bacdfca5069f13e77f255c47662\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=pyclowder2\nbamboo_buildFailed=false\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_branch=CATSPYC-19-add-anonymous-email-receiver-on-the-email-message\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_planRepository_branchDisplayName=CATSPYC-19-add-anonymous-email-receiver-on-the-email-message\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=CATSPYC-19-add-anonymous-email-receiver-on-the-email-message\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-170328101\nbamboo_repository_170524691_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_repository_170524691_name=pyclowder2\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC296-JOB1\nbamboo_planKey=CATS-PYC296\nbamboo_repository_170524691_git_username=\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_1_branchName=CATSPYC-19-add-anonymous-email-receiver-on-the-email-message\n build 23-Apr-2019 17:30:08 Sending build context to Docker daemon 258.6kB build 23-Apr-2019 17:30:08 build 23-Apr-2019 17:30:08 Step 1/9 : FROM ubuntu:16.04 build 23-Apr-2019 17:30:08 ---> 9361ce633ff1 build 23-Apr-2019 17:30:08 Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="sender" EMAIL_RECEIVER="receiver" MAIN_SCRIPT="" build 23-Apr-2019 17:30:09 ---> Running in 267eb833bf5e build 23-Apr-2019 17:30:09 Removing intermediate container 267eb833bf5e build 23-Apr-2019 17:30:09 ---> 23c0ef0d3d6c build 23-Apr-2019 17:30:09 Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* build 23-Apr-2019 17:30:10 ---> Running in d8fc00b60017 build 23-Apr-2019 17:30:15 Reading package lists... build 23-Apr-2019 17:30:15 Building dependency tree... build 23-Apr-2019 17:30:15 Reading state information... build 23-Apr-2019 17:30:15 The following additional packages will be installed: build 23-Apr-2019 17:30:15 ca-certificates libexpat1 libffi6 libpython-stdlib libpython2.7-minimal build 23-Apr-2019 17:30:15 libpython2.7-stdlib libsqlite3-0 libssl1.0.0 mime-support openssl build 23-Apr-2019 17:30:15 python-minimal python-pip-whl python2.7 python2.7-minimal build 23-Apr-2019 17:30:15 Suggested packages: build 23-Apr-2019 17:30:15 python-doc python-tk python2.7-doc binutils binfmt-support build 23-Apr-2019 17:30:15 Recommended packages: build 23-Apr-2019 17:30:15 file build-essential python-all-dev python-setuptools python-wheel build 23-Apr-2019 17:30:15 The following NEW packages will be installed: build 23-Apr-2019 17:30:15 ca-certificates libexpat1 libffi6 libpython-stdlib libpython2.7-minimal build 23-Apr-2019 17:30:15 libpython2.7-stdlib libsqlite3-0 libssl1.0.0 mime-support openssl python build 23-Apr-2019 17:30:15 python-minimal python-pip python-pip-whl python2.7 python2.7-minimal build 23-Apr-2019 17:30:15 0 upgraded, 16 newly installed, 0 to remove and 6 not upgraded. build 23-Apr-2019 17:30:15 Need to get 7391 kB of archives. build 23-Apr-2019 17:30:15 After this operation, 24.8 MB of additional disk space will be used. build 23-Apr-2019 17:30:15 Get:1 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-minimal amd64 2.7.12-1ubuntu0~16.04.4 [339 kB] build 23-Apr-2019 17:30:16 Get:2 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7-minimal amd64 2.7.12-1ubuntu0~16.04.4 [1261 kB] build 23-Apr-2019 17:30:16 Get:3 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-minimal amd64 2.7.12-1~16.04 [28.1 kB] build 23-Apr-2019 17:30:16 Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 mime-support all 3.59ubuntu1 [31.0 kB] build 23-Apr-2019 17:30:16 Get:5 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libexpat1 amd64 2.1.0-7ubuntu0.16.04.3 [71.2 kB] build 23-Apr-2019 17:30:16 Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libffi6 amd64 3.2.1-4 [17.8 kB] build 23-Apr-2019 17:30:16 Get:7 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libsqlite3-0 amd64 3.11.0-1ubuntu1.1 [396 kB] build 23-Apr-2019 17:30:16 Get:8 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libssl1.0.0 amd64 1.0.2g-1ubuntu4.15 [1084 kB] build 23-Apr-2019 17:30:16 Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-stdlib amd64 2.7.12-1ubuntu0~16.04.4 [1880 kB] build 23-Apr-2019 17:30:16 Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7 amd64 2.7.12-1ubuntu0~16.04.4 [224 kB] build 23-Apr-2019 17:30:16 Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython-stdlib amd64 2.7.12-1~16.04 [7768 B] build 23-Apr-2019 17:30:16 Get:12 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python amd64 2.7.12-1~16.04 [137 kB] build 23-Apr-2019 17:30:16 Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 openssl amd64 1.0.2g-1ubuntu4.15 [492 kB] build 23-Apr-2019 17:30:16 Get:14 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 ca-certificates all 20170717~16.04.2 [167 kB] build 23-Apr-2019 17:30:16 Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 python-pip-whl all 8.1.1-2ubuntu0.4 [1110 kB] build 23-Apr-2019 17:30:16 Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 python-pip all 8.1.1-2ubuntu0.4 [144 kB] build 23-Apr-2019 17:30:17 debconf: delaying package configuration, since apt-utils is not installed build 23-Apr-2019 17:30:17 Fetched 7391 kB in 1s (5865 kB/s) build 23-Apr-2019 17:30:17 Selecting previously unselected package libpython2.7-minimal:amd64. build 23-Apr-2019 17:30:17 (Reading database ... build 23-Apr-2019 17:30:17 (Reading database ... 5% build 23-Apr-2019 17:30:17 (Reading database ... 10% build 23-Apr-2019 17:30:17 (Reading database ... 15% build 23-Apr-2019 17:30:17 (Reading database ... 20% build 23-Apr-2019 17:30:17 (Reading database ... 25% build 23-Apr-2019 17:30:17 (Reading database ... 30% build 23-Apr-2019 17:30:17 (Reading database ... 35% build 23-Apr-2019 17:30:17 (Reading database ... 40% build 23-Apr-2019 17:30:17 (Reading database ... 45% build 23-Apr-2019 17:30:17 (Reading database ... 50% build 23-Apr-2019 17:30:17 (Reading database ... 55% build 23-Apr-2019 17:30:17 (Reading database ... 60% build 23-Apr-2019 17:30:17 (Reading database ... 65% build 23-Apr-2019 17:30:17 (Reading database ... 70% build 23-Apr-2019 17:30:17 (Reading database ... 75% build 23-Apr-2019 17:30:17 (Reading database ... 80% build 23-Apr-2019 17:30:17 (Reading database ... 85% build 23-Apr-2019 17:30:17 (Reading database ... 90% build 23-Apr-2019 17:30:17 (Reading database ... 95% build 23-Apr-2019 17:30:17 (Reading database ... 100% build 23-Apr-2019 17:30:17 (Reading database ... 4768 files and directories currently installed.) build 23-Apr-2019 17:30:17 Preparing to unpack .../libpython2.7-minimal_2.7.12-1ubuntu0~16.04.4_amd64.deb ... build 23-Apr-2019 17:30:17 Unpacking libpython2.7-minimal:amd64 (2.7.12-1ubuntu0~16.04.4) ... build 23-Apr-2019 17:30:18 Selecting previously unselected package python2.7-minimal. build 23-Apr-2019 17:30:18 Preparing to unpack .../python2.7-minimal_2.7.12-1ubuntu0~16.04.4_amd64.deb ... build 23-Apr-2019 17:30:18 Unpacking python2.7-minimal (2.7.12-1ubuntu0~16.04.4) ... build 23-Apr-2019 17:30:19 Selecting previously unselected package python-minimal. build 23-Apr-2019 17:30:19 Preparing to unpack .../python-minimal_2.7.12-1~16.04_amd64.deb ... build 23-Apr-2019 17:30:19 Unpacking python-minimal (2.7.12-1~16.04) ... build 23-Apr-2019 17:30:20 Selecting previously unselected package mime-support. build 23-Apr-2019 17:30:20 Preparing to unpack .../mime-support_3.59ubuntu1_all.deb ... build 23-Apr-2019 17:30:20 Unpacking mime-support (3.59ubuntu1) ... build 23-Apr-2019 17:30:21 Selecting previously unselected package libexpat1:amd64. build 23-Apr-2019 17:30:21 Preparing to unpack .../libexpat1_2.1.0-7ubuntu0.16.04.3_amd64.deb ... build 23-Apr-2019 17:30:21 Unpacking libexpat1:amd64 (2.1.0-7ubuntu0.16.04.3) ... build 23-Apr-2019 17:30:22 Selecting previously unselected package libffi6:amd64. build 23-Apr-2019 17:30:22 Preparing to unpack .../libffi6_3.2.1-4_amd64.deb ... build 23-Apr-2019 17:30:22 Unpacking libffi6:amd64 (3.2.1-4) ... build 23-Apr-2019 17:30:22 Selecting previously unselected package libsqlite3-0:amd64. build 23-Apr-2019 17:30:22 Preparing to unpack .../libsqlite3-0_3.11.0-1ubuntu1.1_amd64.deb ... build 23-Apr-2019 17:30:22 Unpacking libsqlite3-0:amd64 (3.11.0-1ubuntu1.1) ... build 23-Apr-2019 17:30:24 Selecting previously unselected package libssl1.0.0:amd64. build 23-Apr-2019 17:30:24 Preparing to unpack .../libssl1.0.0_1.0.2g-1ubuntu4.15_amd64.deb ... build 23-Apr-2019 17:30:24 Unpacking libssl1.0.0:amd64 (1.0.2g-1ubuntu4.15) ... build 23-Apr-2019 17:30:25 Selecting previously unselected package libpython2.7-stdlib:amd64. build 23-Apr-2019 17:30:25 Preparing to unpack .../libpython2.7-stdlib_2.7.12-1ubuntu0~16.04.4_amd64.deb ... build 23-Apr-2019 17:30:25 Unpacking libpython2.7-stdlib:amd64 (2.7.12-1ubuntu0~16.04.4) ... build 23-Apr-2019 17:30:27 Selecting previously unselected package python2.7. build 23-Apr-2019 17:30:27 Preparing to unpack .../python2.7_2.7.12-1ubuntu0~16.04.4_amd64.deb ... build 23-Apr-2019 17:30:27 Unpacking python2.7 (2.7.12-1ubuntu0~16.04.4) ... build 23-Apr-2019 17:30:27 Selecting previously unselected package libpython-stdlib:amd64. build 23-Apr-2019 17:30:27 Preparing to unpack .../libpython-stdlib_2.7.12-1~16.04_amd64.deb ... build 23-Apr-2019 17:30:27 Unpacking libpython-stdlib:amd64 (2.7.12-1~16.04) ... build 23-Apr-2019 17:30:28 Processing triggers for libc-bin (2.23-0ubuntu11) ... build 23-Apr-2019 17:30:29 Setting up libpython2.7-minimal:amd64 (2.7.12-1ubuntu0~16.04.4) ... build 23-Apr-2019 17:30:29 Setting up python2.7-minimal (2.7.12-1ubuntu0~16.04.4) ... build 23-Apr-2019 17:30:30 Linking and byte-compiling packages for runtime python2.7... build 23-Apr-2019 17:30:30 Setting up python-minimal (2.7.12-1~16.04) ... build 23-Apr-2019 17:30:31 Selecting previously unselected package python. build 23-Apr-2019 17:30:31 (Reading database ... build 23-Apr-2019 17:30:31 (Reading database ... 5% build 23-Apr-2019 17:30:31 (Reading database ... 10% build 23-Apr-2019 17:30:31 (Reading database ... 15% build 23-Apr-2019 17:30:31 (Reading database ... 20% build 23-Apr-2019 17:30:31 (Reading database ... 25% build 23-Apr-2019 17:30:31 (Reading database ... 30% build 23-Apr-2019 17:30:31 (Reading database ... 35% build 23-Apr-2019 17:30:31 (Reading database ... 40% build 23-Apr-2019 17:30:31 (Reading database ... 45% build 23-Apr-2019 17:30:31 (Reading database ... 50% build 23-Apr-2019 17:30:31 (Reading database ... 55% build 23-Apr-2019 17:30:31 (Reading database ... 60% build 23-Apr-2019 17:30:31 (Reading database ... 65% build 23-Apr-2019 17:30:31 (Reading database ... 70% build 23-Apr-2019 17:30:31 (Reading database ... 75% build 23-Apr-2019 17:30:31 (Reading database ... 80% build 23-Apr-2019 17:30:31 (Reading database ... 85% build 23-Apr-2019 17:30:31 (Reading database ... 90% build 23-Apr-2019 17:30:31 (Reading database ... 95% build 23-Apr-2019 17:30:31 (Reading database ... 100% build 23-Apr-2019 17:30:31 (Reading database ... 5579 files and directories currently installed.) build 23-Apr-2019 17:30:31 Preparing to unpack .../python_2.7.12-1~16.04_amd64.deb ... build 23-Apr-2019 17:30:31 Unpacking python (2.7.12-1~16.04) ... build 23-Apr-2019 17:30:32 Selecting previously unselected package openssl. build 23-Apr-2019 17:30:32 Preparing to unpack .../openssl_1.0.2g-1ubuntu4.15_amd64.deb ... build 23-Apr-2019 17:30:32 Unpacking openssl (1.0.2g-1ubuntu4.15) ... build 23-Apr-2019 17:30:32 Selecting previously unselected package ca-certificates. build 23-Apr-2019 17:30:32 Preparing to unpack .../ca-certificates_20170717~16.04.2_all.deb ... build 23-Apr-2019 17:30:33 Unpacking ca-certificates (20170717~16.04.2) ... build 23-Apr-2019 17:30:34 Selecting previously unselected package python-pip-whl. build 23-Apr-2019 17:30:34 Preparing to unpack .../python-pip-whl_8.1.1-2ubuntu0.4_all.deb ... build 23-Apr-2019 17:30:34 Unpacking python-pip-whl (8.1.1-2ubuntu0.4) ... build 23-Apr-2019 17:30:35 Selecting previously unselected package python-pip. build 23-Apr-2019 17:30:35 Preparing to unpack .../python-pip_8.1.1-2ubuntu0.4_all.deb ... build 23-Apr-2019 17:30:35 Unpacking python-pip (8.1.1-2ubuntu0.4) ... build 23-Apr-2019 17:30:36 Setting up mime-support (3.59ubuntu1) ... build 23-Apr-2019 17:30:36 Setting up libexpat1:amd64 (2.1.0-7ubuntu0.16.04.3) ... build 23-Apr-2019 17:30:36 Setting up libffi6:amd64 (3.2.1-4) ... build 23-Apr-2019 17:30:37 Setting up libsqlite3-0:amd64 (3.11.0-1ubuntu1.1) ... build 23-Apr-2019 17:30:37 Setting up libssl1.0.0:amd64 (1.0.2g-1ubuntu4.15) ... build 23-Apr-2019 17:30:37 debconf: unable to initialize frontend: Dialog build 23-Apr-2019 17:30:37 debconf: (TERM is not set, so the dialog frontend is not usable.) build 23-Apr-2019 17:30:37 debconf: falling back to frontend: Readline build 23-Apr-2019 17:30:37 debconf: unable to initialize frontend: Readline build 23-Apr-2019 17:30:37 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) build 23-Apr-2019 17:30:37 debconf: falling back to frontend: Teletype build 23-Apr-2019 17:30:37 Setting up libpython2.7-stdlib:amd64 (2.7.12-1ubuntu0~16.04.4) ... build 23-Apr-2019 17:30:38 Setting up python2.7 (2.7.12-1ubuntu0~16.04.4) ... build 23-Apr-2019 17:30:39 Setting up libpython-stdlib:amd64 (2.7.12-1~16.04) ... build 23-Apr-2019 17:30:39 Setting up python (2.7.12-1~16.04) ... build 23-Apr-2019 17:30:40 Setting up openssl (1.0.2g-1ubuntu4.15) ... build 23-Apr-2019 17:30:40 Setting up ca-certificates (20170717~16.04.2) ... build 23-Apr-2019 17:30:40 debconf: unable to initialize frontend: Dialog build 23-Apr-2019 17:30:40 debconf: (TERM is not set, so the dialog frontend is not usable.) build 23-Apr-2019 17:30:40 debconf: falling back to frontend: Readline build 23-Apr-2019 17:30:40 debconf: unable to initialize frontend: Readline build 23-Apr-2019 17:30:40 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) build 23-Apr-2019 17:30:40 debconf: falling back to frontend: Teletype build 23-Apr-2019 17:30:41 Setting up python-pip-whl (8.1.1-2ubuntu0.4) ... build 23-Apr-2019 17:30:42 Setting up python-pip (8.1.1-2ubuntu0.4) ... build 23-Apr-2019 17:30:43 Processing triggers for libc-bin (2.23-0ubuntu11) ... build 23-Apr-2019 17:30:43 Processing triggers for ca-certificates (20170717~16.04.2) ... build 23-Apr-2019 17:30:44 Updating certificates in /etc/ssl/certs... build 23-Apr-2019 17:30:45 148 added, 0 removed; done. build 23-Apr-2019 17:30:45 Running hooks in /etc/ca-certificates/update.d... build 23-Apr-2019 17:30:45 done. build 23-Apr-2019 17:30:46 Collecting setuptools build 23-Apr-2019 17:30:47 Downloading https://files.pythonhosted.org/packages/ec/51/f45cea425fd5cb0b0380f5b0f048ebc1da5b417e48d304838c02d6288a1e/setuptools-41.0.1-py2.py3-none-any.whl (575kB) build 23-Apr-2019 17:30:47 Installing collected packages: setuptools build 23-Apr-2019 17:30:47 Successfully installed setuptools-41.0.1 build 23-Apr-2019 17:30:47 You are using pip version 8.1.1, however version 19.0.3 is available. build 23-Apr-2019 17:30:47 You should consider upgrading via the 'pip install --upgrade pip' command. build 23-Apr-2019 17:30:49 Removing intermediate container d8fc00b60017 build 23-Apr-2019 17:30:49 ---> 0de04aeb6e12 build 23-Apr-2019 17:30:49 Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder build 23-Apr-2019 17:30:50 ---> 5106d1670a56 build 23-Apr-2019 17:30:50 Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/ build 23-Apr-2019 17:30:51 ---> 695efc5087fd build 23-Apr-2019 17:30:51 Step 6/9 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder build 23-Apr-2019 17:30:51 ---> Running in 7a6d8b83e865 build 23-Apr-2019 17:30:53 Processing /tmp/pyclowder build 23-Apr-2019 17:30:53 Collecting enum34==1.1.6 (from pyclowder===2.1.1) build 23-Apr-2019 17:30:53 Downloading https://files.pythonhosted.org/packages/c5/db/e56e6b4bbac7c4a06de1c50de6fe1ef3810018ae11732a50f15f62c7d050/enum34-1.1.6-py2-none-any.whl build 23-Apr-2019 17:30:53 Collecting pika==0.11.2 (from pyclowder===2.1.1) build 23-Apr-2019 17:30:53 Downloading https://files.pythonhosted.org/packages/76/b4/0ada6918ac79ce4d8d45d0ba436ee21a1ef685047fb1dde4d2de0178b327/pika-0.11.2-py2.py3-none-any.whl (107kB) build 23-Apr-2019 17:30:53 Collecting PyYAML==3.12 (from pyclowder===2.1.1) build 23-Apr-2019 17:30:53 Downloading https://files.pythonhosted.org/packages/4a/85/db5a2df477072b2902b0eb892feb37d88ac635d36245a72a6a69b23b383a/PyYAML-3.12.tar.gz (253kB) build 23-Apr-2019 17:30:53 Collecting requests==2.18.4 (from pyclowder===2.1.1) build 23-Apr-2019 17:30:53 Downloading https://files.pythonhosted.org/packages/49/df/50aa1999ab9bde74656c2919d9c0c085fd2b3775fd3eca826012bef76d8c/requests-2.18.4-py2.py3-none-any.whl (88kB) build 23-Apr-2019 17:30:53 Collecting certifi>=2017.4.17 (from requests==2.18.4->pyclowder===2.1.1) build 23-Apr-2019 17:30:54 Downloading https://files.pythonhosted.org/packages/60/75/f692a584e85b7eaba0e03827b3d51f45f571c2e793dd731e598828d380aa/certifi-2019.3.9-py2.py3-none-any.whl (158kB) build 23-Apr-2019 17:30:54 Collecting chardet<3.1.0,>=3.0.2 (from requests==2.18.4->pyclowder===2.1.1) build 23-Apr-2019 17:30:54 Downloading https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl (133kB) build 23-Apr-2019 17:30:54 Collecting idna<2.7,>=2.5 (from requests==2.18.4->pyclowder===2.1.1) build 23-Apr-2019 17:30:54 Downloading https://files.pythonhosted.org/packages/27/cc/6dd9a3869f15c2edfab863b992838277279ce92663d334df9ecf5106f5c6/idna-2.6-py2.py3-none-any.whl (56kB) build 23-Apr-2019 17:30:54 Collecting urllib3<1.23,>=1.21.1 (from requests==2.18.4->pyclowder===2.1.1) build 23-Apr-2019 17:30:54 Downloading https://files.pythonhosted.org/packages/63/cb/6965947c13a94236f6d4b8223e21beb4d576dc72e8130bd7880f600839b8/urllib3-1.22-py2.py3-none-any.whl (132kB) build 23-Apr-2019 17:30:54 Building wheels for collected packages: PyYAML build 23-Apr-2019 17:30:54 Running setup.py bdist_wheel for PyYAML: started build 23-Apr-2019 17:30:54 Running setup.py bdist_wheel for PyYAML: finished with status 'error' build 23-Apr-2019 17:30:54 Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-1KMc9D/PyYAML/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmp4fV9fypip-wheel- --python-tag cp27: build 23-Apr-2019 17:30:54 usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] build 23-Apr-2019 17:30:54 or: -c --help [cmd1 cmd2 ...] build 23-Apr-2019 17:30:54 or: -c --help-commands build 23-Apr-2019 17:30:54 or: -c cmd --help build 23-Apr-2019 17:30:54 build 23-Apr-2019 17:30:54 error: invalid command 'bdist_wheel' build 23-Apr-2019 17:30:54 build 23-Apr-2019 17:30:54 ---------------------------------------- build 23-Apr-2019 17:30:54  Failed building wheel for PyYAML build 23-Apr-2019 17:30:54  Running setup.py clean for PyYAML build 23-Apr-2019 17:30:54 Failed to build PyYAML build 23-Apr-2019 17:30:54 Installing collected packages: enum34, pika, PyYAML, certifi, chardet, idna, urllib3, requests, pyclowder build 23-Apr-2019 17:30:54 Running setup.py install for PyYAML: started build 23-Apr-2019 17:30:54 Running setup.py install for PyYAML: finished with status 'done' build 23-Apr-2019 17:30:55 Running setup.py install for pyclowder: started build 23-Apr-2019 17:30:55 Running setup.py install for pyclowder: finished with status 'done' build 23-Apr-2019 17:30:55 Successfully installed PyYAML-3.12 certifi-2019.3.9 chardet-3.0.4 enum34-1.1.6 idna-2.6 pika-0.11.2 pyclowder-2.1.1 requests-2.18.4 urllib3-1.22 build 23-Apr-2019 17:30:55 You are using pip version 8.1.1, however version 19.0.3 is available. build 23-Apr-2019 17:30:55 You should consider upgrading via the 'pip install --upgrade pip' command. build 23-Apr-2019 17:30:57 Removing intermediate container 7a6d8b83e865 build 23-Apr-2019 17:30:57 ---> 60c1b21de5b5 build 23-Apr-2019 17:30:57 Step 7/9 : WORKDIR /home/clowder build 23-Apr-2019 17:30:57 ---> Running in 9f367f6169e0 build 23-Apr-2019 17:30:57 Removing intermediate container 9f367f6169e0 build 23-Apr-2019 17:30:57 ---> b392f14d39b1 build 23-Apr-2019 17:30:57 Step 8/9 : COPY notifications.json /home/clowder build 23-Apr-2019 17:30:58 ---> 233e59beaa57 build 23-Apr-2019 17:30:58 Step 9/9 : CMD python "./${MAIN_SCRIPT}" build 23-Apr-2019 17:30:58 ---> Running in a6fe1d9f7d15 build 23-Apr-2019 17:30:59 Removing intermediate container a6fe1d9f7d15 build 23-Apr-2019 17:30:59 ---> 81a1253337e6 build 23-Apr-2019 17:30:59 Successfully built 81a1253337e6 build 23-Apr-2019 17:30:59 Successfully tagged clowder/pyclowder:latest build 23-Apr-2019 17:30:59 Sending build context to Docker daemon 257kB build 23-Apr-2019 17:30:59 build 23-Apr-2019 17:30:59 Step 1/6 : FROM clowder/pyclowder build 23-Apr-2019 17:30:59 ---> 81a1253337e6 build 23-Apr-2019 17:30:59 Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 23-Apr-2019 17:31:00 ---> Running in 010948639e4a build 23-Apr-2019 17:31:00 Removing intermediate container 010948639e4a build 23-Apr-2019 17:31:00 ---> e00f203ee9da build 23-Apr-2019 17:31:00 Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 23-Apr-2019 17:31:00 ---> Running in 409a4a302933 build 23-Apr-2019 17:31:01 Removing intermediate container 409a4a302933 build 23-Apr-2019 17:31:01 ---> 7174f340729e build 23-Apr-2019 17:31:01 Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 23-Apr-2019 17:31:01 ---> Running in 0a12f59b78ee build 23-Apr-2019 17:31:02 Removing intermediate container 0a12f59b78ee build 23-Apr-2019 17:31:02 ---> cdd885ca5621 build 23-Apr-2019 17:31:02 Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 23-Apr-2019 17:31:02 ---> Running in c57b46b0d780 build 23-Apr-2019 17:31:03 Removing intermediate container c57b46b0d780 build 23-Apr-2019 17:31:03 ---> 78f206a3c1fd build 23-Apr-2019 17:31:03 Step 6/6 : ONBUILD ADD . /home/clowder/ build 23-Apr-2019 17:31:03 ---> Running in 767a25807a0f build 23-Apr-2019 17:31:04 Removing intermediate container 767a25807a0f build 23-Apr-2019 17:31:04 ---> 66386c1d8f1d build 23-Apr-2019 17:31:04 Successfully built 66386c1d8f1d build 23-Apr-2019 17:31:04 Successfully tagged clowder/pyclowder:onbuild build 23-Apr-2019 17:31:04 Sending build context to Docker daemon 12.29kB build 23-Apr-2019 17:31:04 build 23-Apr-2019 17:31:04 Step 1/5 : FROM clowder/pyclowder:onbuild build 23-Apr-2019 17:31:04 # Executing 5 build triggers build 23-Apr-2019 17:31:05 ---> Running in 983cf6e159d8 build 23-Apr-2019 17:31:07 Removing intermediate container 983cf6e159d8 build 23-Apr-2019 17:31:08 ---> Running in 24b3aaa71590 build 23-Apr-2019 17:31:10 Removing intermediate container 24b3aaa71590 build 23-Apr-2019 17:31:10 ---> fac3931304f7 build 23-Apr-2019 17:31:10 Step 2/5 : ENV MAIN_SCRIPT="binary_extractor.py" RABBITMQ_QUEUE="" IMAGE_BINARY="" IMAGE_TYPE="" IMAGE_THUMBNAIL_COMMAND="" IMAGE_PREVIEW_COMMAND="" PREVIEW_BINARY="" PREVIEW_TYPE="" PREVIEW_COMMAND="" build 23-Apr-2019 17:31:11 ---> Running in 9a03f61ba096 build 23-Apr-2019 17:31:12 Removing intermediate container 9a03f61ba096 build 23-Apr-2019 17:31:12 ---> 8aba924e2082 build 23-Apr-2019 17:31:12 Step 3/5 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 23-Apr-2019 17:31:12 ---> Running in d6c2322fb20f build 23-Apr-2019 17:31:12 Removing intermediate container d6c2322fb20f build 23-Apr-2019 17:31:12 ---> 826aaa2aa026 build 23-Apr-2019 17:31:12 Step 4/5 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 23-Apr-2019 17:31:13 ---> Running in d15c8e3531b3 build 23-Apr-2019 17:31:13 Removing intermediate container d15c8e3531b3 build 23-Apr-2019 17:31:13 ---> f8b35c42040b build 23-Apr-2019 17:31:13 Step 5/5 : ONBUILD COPY extractor_info.json /home/clowder/ build 23-Apr-2019 17:31:13 ---> Running in 6c8cc91d59d2 build 23-Apr-2019 17:31:14 Removing intermediate container 6c8cc91d59d2 build 23-Apr-2019 17:31:14 ---> e17204201541 build 23-Apr-2019 17:31:14 Successfully built e17204201541 build 23-Apr-2019 17:31:14 Successfully tagged clowder/extractors-binary-preview:onbuild build 23-Apr-2019 17:31:14 Sending build context to Docker daemon 6.656kB build 23-Apr-2019 17:31:14 build 23-Apr-2019 17:31:14 Step 1/9 : FROM clowder/pyclowder:onbuild build 23-Apr-2019 17:31:14 # Executing 5 build triggers build 23-Apr-2019 17:31:15 ---> Running in 7640427b1787 build 23-Apr-2019 17:31:17 Removing intermediate container 7640427b1787 build 23-Apr-2019 17:31:17 ---> Running in a2ad71b54c1e build 23-Apr-2019 17:31:21 Removing intermediate container a2ad71b54c1e build 23-Apr-2019 17:31:21 ---> 52303a8953fa build 23-Apr-2019 17:31:21 Step 2/9 : ENV EXTRACTION_FUNC="" build 23-Apr-2019 17:31:22 ---> Running in e087c26e4557 build 23-Apr-2019 17:31:22 Removing intermediate container e087c26e4557 build 23-Apr-2019 17:31:22 ---> 3faaa0ee5ced build 23-Apr-2019 17:31:22 Step 3/9 : ENV EXTRACTION_MODULE="" build 23-Apr-2019 17:31:22 ---> Running in 9b0758ef09d8 build 23-Apr-2019 17:31:23 Removing intermediate container 9b0758ef09d8 build 23-Apr-2019 17:31:23 ---> 53eb34c7aac6 build 23-Apr-2019 17:31:23 Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 23-Apr-2019 17:31:24 ---> Running in 3240fd6e2060 build 23-Apr-2019 17:31:24 Removing intermediate container 3240fd6e2060 build 23-Apr-2019 17:31:24 ---> af35ffbb2a22 build 23-Apr-2019 17:31:24 Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 23-Apr-2019 17:31:25 ---> Running in 5817d8281ba3 build 23-Apr-2019 17:31:26 Removing intermediate container 5817d8281ba3 build 23-Apr-2019 17:31:26 ---> ef83a491d249 build 23-Apr-2019 17:31:26 Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 23-Apr-2019 17:31:26 ---> Running in 429639a615b5 build 23-Apr-2019 17:31:27 Removing intermediate container 429639a615b5 build 23-Apr-2019 17:31:27 ---> 5ef4e7d0a767 build 23-Apr-2019 17:31:27 Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 23-Apr-2019 17:31:27 ---> Running in 7a3d80b0cd1e build 23-Apr-2019 17:31:27 Removing intermediate container 7a3d80b0cd1e build 23-Apr-2019 17:31:27 ---> 3044e70b8357 build 23-Apr-2019 17:31:27 Step 8/9 : ONBUILD ADD . /home/clowder/ build 23-Apr-2019 17:31:28 ---> Running in 79ca1ac4fb32 build 23-Apr-2019 17:31:28 Removing intermediate container 79ca1ac4fb32 build 23-Apr-2019 17:31:28 ---> a8e2358eb08f build 23-Apr-2019 17:31:28 Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" build 23-Apr-2019 17:31:29 ---> Running in cb41ff671ea0 build 23-Apr-2019 17:31:29 Removing intermediate container cb41ff671ea0 build 23-Apr-2019 17:31:29 ---> f94c931d6c4e build 23-Apr-2019 17:31:29 Successfully built f94c931d6c4e build 23-Apr-2019 17:31:29 Successfully tagged clowder/extractors-simple-extractor:onbuild build 23-Apr-2019 17:31:29 Sending build context to Docker daemon 13.31kB build 23-Apr-2019 17:31:29 build 23-Apr-2019 17:31:29 Step 1/10 : FROM clowder/pyclowder:latest build 23-Apr-2019 17:31:29 ---> 81a1253337e6 build 23-Apr-2019 17:31:29 Step 2/10 : ENV R_SCRIPT="" R_FUNCTION="" build 23-Apr-2019 17:31:30 ---> Running in aea6fa51fa51 build 23-Apr-2019 17:31:30 Removing intermediate container aea6fa51fa51 build 23-Apr-2019 17:31:30 ---> cb8ec6373187 build 23-Apr-2019 17:31:30 Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" build 23-Apr-2019 17:31:31 ---> Running in db5b3e39fb9f build 23-Apr-2019 17:31:32 Executing: /tmp/tmp.i07GVvMpgf/gpg.1.sh --keyserver build 23-Apr-2019 17:31:32 keyserver.ubuntu.com build 23-Apr-2019 17:31:32 --recv build 23-Apr-2019 17:31:32 E084DAB9 build 23-Apr-2019 17:31:32 gpg: requesting key E084DAB9 from hkp server keyserver.ubuntu.com build 23-Apr-2019 17:31:32 gpg: key E084DAB9: public key "Totally Legit Signing Key " imported build 23-Apr-2019 17:31:32 gpg: key E084DAB9: public key "Michael Rutter " imported build 23-Apr-2019 17:31:32 gpg: Total number processed: 2 build 23-Apr-2019 17:31:32 gpg: imported: 2 (RSA: 2) build 23-Apr-2019 17:31:37 Reading package lists... build 23-Apr-2019 17:31:37 Building dependency tree... build 23-Apr-2019 17:31:37 Reading state information... build 23-Apr-2019 17:31:37 The following additional packages will be installed: build 23-Apr-2019 17:31:37 autoconf automake autotools-dev binutils bsdmainutils build-essential bzip2 build 23-Apr-2019 17:31:37 cdbs cpp cpp-5 debhelper dh-strip-nondeterminism dh-translations dpkg-dev build 23-Apr-2019 17:31:37 file fontconfig fontconfig-config fonts-dejavu-core g++ g++-5 gcc gcc-5 build 23-Apr-2019 17:31:37 gettext gettext-base gfortran gfortran-5 groff-base icu-devtools intltool build 23-Apr-2019 17:31:37 intltool-debian libarchive-zip-perl libasan2 libasn1-8-heimdal build 23-Apr-2019 17:31:37 libasprintf0v5 libatomic1 libblas-common libblas-dev libblas3 libbz2-dev build 23-Apr-2019 17:31:37 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcroco3 libcurl3 build 23-Apr-2019 17:31:37 libdatrie1 libdpkg-perl libencode-locale-perl libfile-listing-perl build 23-Apr-2019 17:31:37 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-5-dev build 23-Apr-2019 17:31:37 libgdbm3 libgfortran-5-dev libgfortran3 libglib2.0-0 libgmp10 libgnutls30 build 23-Apr-2019 17:31:37 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b build 23-Apr-2019 17:31:37 libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 build 23-Apr-2019 17:31:37 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl build 23-Apr-2019 17:31:37 libhttp-cookies-perl libhttp-date-perl libhttp-message-perl build 23-Apr-2019 17:31:37 libhttp-negotiate-perl libhx509-5-heimdal libice6 libicu-dev libicu55 build 23-Apr-2019 17:31:37 libidn11 libio-html-perl libio-socket-ssl-perl libisl15 libitm1 libjbig0 build 23-Apr-2019 17:31:37 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev build 23-Apr-2019 17:31:37 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 build 23-Apr-2019 17:31:37 liblapack-dev liblapack3 libldap-2.4-2 liblsan0 liblwp-mediatypes-perl build 23-Apr-2019 17:31:37 liblwp-protocol-https-perl liblzma-dev libmagic1 libmpc3 libmpfr4 libmpx0 build 23-Apr-2019 17:31:37 libncurses5-dev libnet-http-perl libnet-ssleay-perl libnettle6 libp11-kit0 build 23-Apr-2019 17:31:37 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils build 23-Apr-2019 17:31:37 libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.22 build 23-Apr-2019 17:31:37 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libquadmath0 build 23-Apr-2019 17:31:37 libreadline-dev libreadline6-dev libroken18-heimdal librtmp1 libsasl2-2 build 23-Apr-2019 17:31:37 libsasl2-modules-db libsigsegv2 libsm6 libstdc++-5-dev libtasn1-6 libtcl8.6 build 23-Apr-2019 17:31:37 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 build 23-Apr-2019 17:31:37 libtsan0 libubsan0 libunistring0 liburi-perl libwind0-heimdal libwww-perl build 23-Apr-2019 17:31:37 libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 build 23-Apr-2019 17:31:37 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 build 23-Apr-2019 17:31:37 libxmuu1 libxrender1 libxss1 libxt6 linux-libc-dev m4 make man-db netbase build 23-Apr-2019 17:31:37 patch perl perl-modules-5.22 pkg-config po-debconf python-pkg-resources build 23-Apr-2019 17:31:37 python-scour python-six tzdata ucf unzip x11-common xauth xdg-utils xz-utils build 23-Apr-2019 17:31:37 zip zlib1g-dev build 23-Apr-2019 17:31:37 Suggested packages: build 23-Apr-2019 17:31:37 autoconf-archive gnu-standards autoconf-doc libtool binutils-doc wamerican build 23-Apr-2019 17:31:37 | wordlist whois vacation bzip2-doc devscripts cpp-doc gcc-5-locales dh-make build 23-Apr-2019 17:31:37 debian-keyring g++-multilib g++-5-multilib gcc-5-doc libstdc++6-5-dbg build 23-Apr-2019 17:31:37 gcc-multilib manpages-dev flex bison gdb gcc-doc gcc-5-multilib libgcc1-dbg build 23-Apr-2019 17:31:37 libgomp1-dbg libitm1-dbg libatomic1-dbg libasan2-dbg liblsan0-dbg build 23-Apr-2019 17:31:37 libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx0-dbg libquadmath0-dbg build 23-Apr-2019 17:31:37 gettext-doc autopoint gfortran-multilib gfortran-doc gfortran-5-multilib build 23-Apr-2019 17:31:37 gfortran-5-doc libgfortran3-dbg groff liblapack-doc-man liblapack-doc build 23-Apr-2019 17:31:37 glibc-doc gnutls-bin krb5-doc krb5-user libdata-dump-perl icu-doc build 23-Apr-2019 17:31:37 libcrypt-ssleay-perl liblzma-doc ncurses-doc readline-doc libstdc++-5-doc build 23-Apr-2019 17:31:37 tcl8.6 tk8.6 libauthen-ntlm-perl make-doc less www-browser ed diffutils-doc build 23-Apr-2019 17:31:37 perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl build 23-Apr-2019 17:31:37 libmail-box-perl python-setuptools python-rsvg python-cairo ess r-doc-info build 23-Apr-2019 17:31:37 | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base build 23-Apr-2019 17:31:37 texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra build 23-Apr-2019 17:31:37 texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo build 23-Apr-2019 17:31:37 gvfs-bin build 23-Apr-2019 17:31:37 Recommended packages: build 23-Apr-2019 17:31:37 fakeroot libalgorithm-merge-perl curl | wget | lynx-cur libasprintf-dev build 23-Apr-2019 17:31:37 libgettextpo-dev bzip2-doc manpages manpages-dev libfile-fcntllock-perl build 23-Apr-2019 17:31:37 libglib2.0-data shared-mime-info xdg-user-dirs libhtml-format-perl build 23-Apr-2019 17:31:37 krb5-locales libsasl2-modules libhtml-form-perl libhttp-daemon-perl build 23-Apr-2019 17:31:37 libmailtools-perl xml-core ifupdown rename libmail-sendmail-perl build 23-Apr-2019 17:31:37 r-recommended r-doc-html libfile-mimeinfo-perl libnet-dbus-perl build 23-Apr-2019 17:31:37 libx11-protocol-perl x11-utils x11-xserver-utils build 23-Apr-2019 17:31:37 The following NEW packages will be installed: build 23-Apr-2019 17:31:37 autoconf automake autotools-dev binutils bsdmainutils build-essential bzip2 build 23-Apr-2019 17:31:37 cdbs cpp cpp-5 debhelper dh-strip-nondeterminism dh-translations dpkg-dev build 23-Apr-2019 17:31:37 file fontconfig fontconfig-config fonts-dejavu-core g++ g++-5 gcc gcc-5 build 23-Apr-2019 17:31:37 gettext gettext-base gfortran gfortran-5 groff-base icu-devtools intltool build 23-Apr-2019 17:31:37 intltool-debian libarchive-zip-perl libasan2 libasn1-8-heimdal build 23-Apr-2019 17:31:37 libasprintf0v5 libatomic1 libblas-common libblas-dev libblas3 libbz2-dev build 23-Apr-2019 17:31:37 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcroco3 libcurl3 build 23-Apr-2019 17:31:37 libdatrie1 libdpkg-perl libencode-locale-perl libfile-listing-perl build 23-Apr-2019 17:31:37 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-5-dev build 23-Apr-2019 17:31:37 libgdbm3 libgfortran-5-dev libgfortran3 libglib2.0-0 libgmp10 libgnutls30 build 23-Apr-2019 17:31:37 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b build 23-Apr-2019 17:31:37 libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 build 23-Apr-2019 17:31:37 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl build 23-Apr-2019 17:31:37 libhttp-cookies-perl libhttp-date-perl libhttp-message-perl build 23-Apr-2019 17:31:37 libhttp-negotiate-perl libhx509-5-heimdal libice6 libicu-dev libicu55 build 23-Apr-2019 17:31:37 libidn11 libio-html-perl libio-socket-ssl-perl libisl15 libitm1 libjbig0 build 23-Apr-2019 17:31:37 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev build 23-Apr-2019 17:31:37 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 build 23-Apr-2019 17:31:37 liblapack-dev liblapack3 libldap-2.4-2 liblsan0 liblwp-mediatypes-perl build 23-Apr-2019 17:31:37 liblwp-protocol-https-perl liblzma-dev libmagic1 libmpc3 libmpfr4 libmpx0 build 23-Apr-2019 17:31:37 libncurses5-dev libnet-http-perl libnet-ssleay-perl libnettle6 libp11-kit0 build 23-Apr-2019 17:31:37 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils build 23-Apr-2019 17:31:37 libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.22 build 23-Apr-2019 17:31:37 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libquadmath0 build 23-Apr-2019 17:31:37 libreadline-dev libreadline6-dev libroken18-heimdal librtmp1 libsasl2-2 build 23-Apr-2019 17:31:37 libsasl2-modules-db libsigsegv2 libsm6 libstdc++-5-dev libtasn1-6 libtcl8.6 build 23-Apr-2019 17:31:37 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 build 23-Apr-2019 17:31:37 libtsan0 libubsan0 libunistring0 liburi-perl libwind0-heimdal libwww-perl build 23-Apr-2019 17:31:37 libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 build 23-Apr-2019 17:31:37 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 build 23-Apr-2019 17:31:37 libxmuu1 libxrender1 libxss1 libxt6 linux-libc-dev m4 make man-db netbase build 23-Apr-2019 17:31:37 patch perl perl-modules-5.22 pkg-config po-debconf python-pkg-resources build 23-Apr-2019 17:31:37 python-scour python-six r-base-core r-base-dev tzdata ucf unzip x11-common build 23-Apr-2019 17:31:37 xauth xdg-utils xz-utils zip zlib1g-dev build 23-Apr-2019 17:31:37 0 upgraded, 190 newly installed, 0 to remove and 6 not upgraded. build 23-Apr-2019 17:31:37 Need to get 116 MB of archives. build 23-Apr-2019 17:31:37 After this operation, 416 MB of additional disk space will be used. build 23-Apr-2019 17:31:37 Get:1 http://cran.rstudio.com/bin/linux/ubuntu xenial/ r-base-core 3.4.4-1xenial0 [23.2 MB] build 23-Apr-2019 17:31:37 Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgdbm3 amd64 1.8.3-13.1 [16.9 kB] build 23-Apr-2019 17:31:37 Get:3 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libglib2.0-0 amd64 2.48.2-0ubuntu4.1 [1120 kB] build 23-Apr-2019 17:31:38 Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] build 23-Apr-2019 17:31:38 Get:5 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxdmcp6 amd64 1:1.1.2-1.1 [11.0 kB] build 23-Apr-2019 17:31:38 Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb1 amd64 1.11.1-1ubuntu1 [40.0 kB] build 23-Apr-2019 17:31:38 Get:7 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-data all 2:1.6.3-1ubuntu2.1 [113 kB] build 23-Apr-2019 17:31:38 Get:8 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-6 amd64 2:1.6.3-1ubuntu2.1 [570 kB] build 23-Apr-2019 17:31:38 Get:9 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB] build 23-Apr-2019 17:31:38 Get:10 http://archive.ubuntu.com/ubuntu xenial/main amd64 groff-base amd64 1.22.3-7 [1151 kB] build 23-Apr-2019 17:31:38 Get:11 http://archive.ubuntu.com/ubuntu xenial/main amd64 bsdmainutils amd64 9.0.6ubuntu3 [174 kB] build 23-Apr-2019 17:31:38 Get:12 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpipeline1 amd64 1.4.1-2 [24.6 kB] build 23-Apr-2019 17:31:38 Get:13 http://archive.ubuntu.com/ubuntu xenial/main amd64 man-db amd64 2.7.5-1 [854 kB] build 23-Apr-2019 17:31:38 Get:14 http://archive.ubuntu.com/ubuntu xenial/main amd64 fonts-dejavu-core all 2.35-1 [1039 kB] build 23-Apr-2019 17:31:38 Get:15 http://archive.ubuntu.com/ubuntu xenial/main amd64 ucf all 3.0036 [52.9 kB] build 23-Apr-2019 17:31:38 Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 fontconfig-config all 2.11.94-0ubuntu1.1 [49.9 kB] build 23-Apr-2019 17:31:38 Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpng12-0 amd64 1.2.54-1ubuntu1.1 [116 kB] build 23-Apr-2019 17:31:38 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfreetype6 amd64 2.6.1-0.1ubuntu2.3 [316 kB] build 23-Apr-2019 17:31:38 Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfontconfig1 amd64 2.11.94-0ubuntu1.1 [131 kB] build 23-Apr-2019 17:31:38 Get:20 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 fontconfig amd64 2.11.94-0ubuntu1.1 [178 kB] build 23-Apr-2019 17:31:38 Get:21 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 x11-common all 1:7.7+13ubuntu3.1 [22.9 kB] build 23-Apr-2019 17:31:38 Get:22 http://archive.ubuntu.com/ubuntu xenial/main amd64 libice6 amd64 2:1.0.9-1 [39.2 kB] build 23-Apr-2019 17:31:38 Get:23 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libjpeg-turbo8 amd64 1.4.2-0ubuntu3.1 [111 kB] build 23-Apr-2019 17:31:38 Get:24 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpcrecpp0v5 amd64 2:8.38-3.1 [15.2 kB] build 23-Apr-2019 17:31:38 Get:25 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsigsegv2 amd64 2.10-4 [14.1 kB] build 23-Apr-2019 17:31:38 Get:26 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB] build 23-Apr-2019 17:31:38 Get:27 http://archive.ubuntu.com/ubuntu xenial/main amd64 libunistring0 amd64 0.9.3-5.2ubuntu1 [279 kB] build 23-Apr-2019 17:31:38 Get:28 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxrender1 amd64 1:0.9.9-0ubuntu1 [18.5 kB] build 23-Apr-2019 17:31:38 Get:29 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxft2 amd64 2.3.2-1 [36.1 kB] build 23-Apr-2019 17:31:38 Get:30 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxss1 amd64 1:1.2.2-1 [8582 B] build 23-Apr-2019 17:31:38 Get:31 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 perl-modules-5.22 all 5.22.1-9ubuntu0.6 [2629 kB] build 23-Apr-2019 17:31:39 Get:32 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libperl5.22 amd64 5.22.1-9ubuntu0.6 [3405 kB] build 23-Apr-2019 17:31:39 Get:33 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 perl amd64 5.22.1-9ubuntu0.6 [237 kB] build 23-Apr-2019 17:31:39 Get:34 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjbig0 amd64 2.1-3.1 [26.6 kB] build 23-Apr-2019 17:31:39 Get:35 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgmp10 amd64 2:6.1.0+dfsg-2 [240 kB] build 23-Apr-2019 17:31:39 Get:36 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpfr4 amd64 3.1.4-1 [191 kB] build 23-Apr-2019 17:31:39 Get:37 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpc3 amd64 1.0.3-1 [39.7 kB] build 23-Apr-2019 17:31:39 Get:38 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 tzdata all 2018i-0ubuntu0.16.04 [168 kB] build 23-Apr-2019 17:31:39 Get:39 http://archive.ubuntu.com/ubuntu xenial/main amd64 bzip2 amd64 1.0.6-8 [32.7 kB] build 23-Apr-2019 17:31:39 Get:40 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmagic1 amd64 1:5.25-2ubuntu1.2 [216 kB] build 23-Apr-2019 17:31:39 Get:41 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 file amd64 1:5.25-2ubuntu1.2 [21.2 kB] build 23-Apr-2019 17:31:39 Get:42 http://cran.rstudio.com/bin/linux/ubuntu xenial/ r-base-dev 3.4.4-1xenial0 [4416 B] build 23-Apr-2019 17:31:39 Get:43 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libnettle6 amd64 3.2-1ubuntu0.16.04.1 [93.5 kB] build 23-Apr-2019 17:31:39 Get:44 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhogweed4 amd64 3.2-1ubuntu0.16.04.1 [136 kB] build 23-Apr-2019 17:31:39 Get:45 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libidn11 amd64 1.32-3ubuntu1.2 [46.5 kB] build 23-Apr-2019 17:31:39 Get:46 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libp11-kit0 amd64 0.23.2-5~ubuntu16.04.1 [105 kB] build 23-Apr-2019 17:31:39 Get:47 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtasn1-6 amd64 4.7-3ubuntu0.16.04.3 [43.5 kB] build 23-Apr-2019 17:31:39 Get:48 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgnutls30 amd64 3.4.10-4ubuntu1.4 [548 kB] build 23-Apr-2019 17:31:39 Get:49 http://archive.ubuntu.com/ubuntu xenial/main amd64 netbase all 5.3 [12.9 kB] build 23-Apr-2019 17:31:39 Get:50 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasprintf0v5 amd64 0.19.7-2ubuntu3.1 [6568 B] build 23-Apr-2019 17:31:39 Get:51 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gettext-base amd64 0.19.7-2ubuntu3.1 [48.0 kB] build 23-Apr-2019 17:31:39 Get:52 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libroken18-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [41.4 kB] build 23-Apr-2019 17:31:39 Get:53 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasn1-8-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [174 kB] build 23-Apr-2019 17:31:39 Get:54 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5support0 amd64 1.13.2+dfsg-5ubuntu2.1 [31.2 kB] build 23-Apr-2019 17:31:39 Get:55 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libk5crypto3 amd64 1.13.2+dfsg-5ubuntu2.1 [81.3 kB] build 23-Apr-2019 17:31:39 Get:56 http://archive.ubuntu.com/ubuntu xenial/main amd64 libkeyutils1 amd64 1.5.9-8ubuntu1 [9904 B] build 23-Apr-2019 17:31:39 Get:57 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5-3 amd64 1.13.2+dfsg-5ubuntu2.1 [273 kB] build 23-Apr-2019 17:31:39 Get:58 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgssapi-krb5-2 amd64 1.13.2+dfsg-5ubuntu2.1 [120 kB] build 23-Apr-2019 17:31:39 Get:59 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhcrypto4-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [85.0 kB] build 23-Apr-2019 17:31:39 Get:60 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libheimbase1-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [29.3 kB] build 23-Apr-2019 17:31:39 Get:61 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libwind0-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [47.8 kB] build 23-Apr-2019 17:31:39 Get:62 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhx509-5-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [107 kB] build 23-Apr-2019 17:31:39 Get:63 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5-26-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [202 kB] build 23-Apr-2019 17:31:39 Get:64 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libheimntlm0-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [15.1 kB] build 23-Apr-2019 17:31:39 Get:65 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgssapi3-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [96.1 kB] build 23-Apr-2019 17:31:39 Get:66 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libicu55 amd64 55.1-7ubuntu0.4 [7646 kB] build 23-Apr-2019 17:31:39 Get:67 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libsasl2-modules-db amd64 2.1.26.dfsg1-14ubuntu0.1 [14.5 kB] build 23-Apr-2019 17:31:39 Get:68 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libsasl2-2 amd64 2.1.26.dfsg1-14ubuntu0.1 [48.6 kB] build 23-Apr-2019 17:31:39 Get:69 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libldap-2.4-2 amd64 2.4.42+dfsg-2ubuntu3.4 [160 kB] build 23-Apr-2019 17:31:39 Get:70 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d-1ubuntu0.1 [54.4 kB] build 23-Apr-2019 17:31:39 Get:71 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libxml2 amd64 2.9.3+dfsg1-1ubuntu0.6 [697 kB] build 23-Apr-2019 17:31:39 Get:72 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxmuu1 amd64 2:1.1.2-2 [9674 B] build 23-Apr-2019 17:31:39 Get:73 http://archive.ubuntu.com/ubuntu xenial/main amd64 xauth amd64 1:1.0.9-1ubuntu2 [22.7 kB] build 23-Apr-2019 17:31:39 Get:74 http://archive.ubuntu.com/ubuntu xenial/main amd64 m4 amd64 1.4.17-5 [195 kB] build 23-Apr-2019 17:31:39 Get:75 http://archive.ubuntu.com/ubuntu xenial/main amd64 autoconf all 2.69-9 [321 kB] build 23-Apr-2019 17:31:39 Get:76 http://archive.ubuntu.com/ubuntu xenial/main amd64 autotools-dev all 20150820.1 [39.8 kB] build 23-Apr-2019 17:31:39 Get:77 http://archive.ubuntu.com/ubuntu xenial/main amd64 automake all 1:1.15-4ubuntu1 [510 kB] build 23-Apr-2019 17:31:40 Get:78 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 binutils amd64 2.26.1-1ubuntu1~16.04.8 [2312 kB] build 23-Apr-2019 17:31:40 Get:79 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc-dev-bin amd64 2.23-0ubuntu11 [68.5 kB] build 23-Apr-2019 17:31:40 Get:80 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 linux-libc-dev amd64 4.4.0-146.172 [877 kB] build 23-Apr-2019 17:31:40 Get:81 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc6-dev amd64 2.23-0ubuntu11 [2086 kB] build 23-Apr-2019 17:31:40 Get:82 http://archive.ubuntu.com/ubuntu xenial/main amd64 libisl15 amd64 0.16.1-1 [524 kB] build 23-Apr-2019 17:31:40 Get:83 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 cpp-5 amd64 5.4.0-6ubuntu1~16.04.11 [7660 kB] build 23-Apr-2019 17:31:40 Get:84 http://archive.ubuntu.com/ubuntu xenial/main amd64 cpp amd64 4:5.3.1-1ubuntu1 [27.7 kB] build 23-Apr-2019 17:31:40 Get:85 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcc1-0 amd64 5.4.0-6ubuntu1~16.04.11 [38.8 kB] build 23-Apr-2019 17:31:40 Get:86 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgomp1 amd64 5.4.0-6ubuntu1~16.04.11 [55.0 kB] build 23-Apr-2019 17:31:40 Get:87 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libitm1 amd64 5.4.0-6ubuntu1~16.04.11 [27.4 kB] build 23-Apr-2019 17:31:40 Get:88 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libatomic1 amd64 5.4.0-6ubuntu1~16.04.11 [8896 B] build 23-Apr-2019 17:31:40 Get:89 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasan2 amd64 5.4.0-6ubuntu1~16.04.11 [264 kB] build 23-Apr-2019 17:31:40 Get:90 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 liblsan0 amd64 5.4.0-6ubuntu1~16.04.11 [105 kB] build 23-Apr-2019 17:31:40 Get:91 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtsan0 amd64 5.4.0-6ubuntu1~16.04.11 [244 kB] build 23-Apr-2019 17:31:40 Get:92 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libubsan0 amd64 5.4.0-6ubuntu1~16.04.11 [95.4 kB] build 23-Apr-2019 17:31:40 Get:93 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcilkrts5 amd64 5.4.0-6ubuntu1~16.04.11 [40.1 kB] build 23-Apr-2019 17:31:40 Get:94 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmpx0 amd64 5.4.0-6ubuntu1~16.04.11 [9748 B] build 23-Apr-2019 17:31:40 Get:95 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libquadmath0 amd64 5.4.0-6ubuntu1~16.04.11 [131 kB] build 23-Apr-2019 17:31:40 Get:96 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgcc-5-dev amd64 5.4.0-6ubuntu1~16.04.11 [2229 kB] build 23-Apr-2019 17:31:40 Get:97 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gcc-5 amd64 5.4.0-6ubuntu1~16.04.11 [8417 kB] build 23-Apr-2019 17:31:40 Get:98 http://archive.ubuntu.com/ubuntu xenial/main amd64 gcc amd64 4:5.3.1-1ubuntu1 [5244 B] build 23-Apr-2019 17:31:40 Get:99 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libstdc++-5-dev amd64 5.4.0-6ubuntu1~16.04.11 [1426 kB] build 23-Apr-2019 17:31:40 Get:100 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 g++-5 amd64 5.4.0-6ubuntu1~16.04.11 [8310 kB] build 23-Apr-2019 17:31:41 Get:101 http://archive.ubuntu.com/ubuntu xenial/main amd64 g++ amd64 4:5.3.1-1ubuntu1 [1504 B] build 23-Apr-2019 17:31:41 Get:102 http://archive.ubuntu.com/ubuntu xenial/main amd64 make amd64 4.1-6 [151 kB] build 23-Apr-2019 17:31:41 Get:103 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdpkg-perl all 1.18.4ubuntu1.5 [195 kB] build 23-Apr-2019 17:31:41 Get:104 http://archive.ubuntu.com/ubuntu xenial/main amd64 xz-utils amd64 5.1.1alpha+20120614-2ubuntu2 [78.8 kB] build 23-Apr-2019 17:31:41 Get:105 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 patch amd64 2.7.5-1ubuntu0.16.04.1 [90.5 kB] build 23-Apr-2019 17:31:41 Get:106 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 dpkg-dev all 1.18.4ubuntu1.5 [584 kB] build 23-Apr-2019 17:31:42 Get:107 http://archive.ubuntu.com/ubuntu xenial/main amd64 build-essential amd64 12.1ubuntu2 [4758 B] build 23-Apr-2019 17:31:42 Get:108 http://archive.ubuntu.com/ubuntu xenial/main amd64 libcroco3 amd64 0.6.11-1 [81.6 kB] build 23-Apr-2019 17:31:42 Get:109 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gettext amd64 0.19.7-2ubuntu3.1 [1082 kB] build 23-Apr-2019 17:31:42 Get:110 http://archive.ubuntu.com/ubuntu xenial/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] build 23-Apr-2019 17:31:42 Get:111 http://archive.ubuntu.com/ubuntu xenial/main amd64 po-debconf all 1.0.19 [234 kB] build 23-Apr-2019 17:31:42 Get:112 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libarchive-zip-perl all 1.56-2ubuntu0.1 [84.7 kB] build 23-Apr-2019 17:31:42 Get:113 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfile-stripnondeterminism-perl all 0.015-1 [10.3 kB] build 23-Apr-2019 17:31:42 Get:114 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] build 23-Apr-2019 17:31:42 Get:115 http://archive.ubuntu.com/ubuntu xenial/main amd64 dh-strip-nondeterminism all 0.015-1 [4864 B] build 23-Apr-2019 17:31:42 Get:116 http://archive.ubuntu.com/ubuntu xenial/main amd64 debhelper all 9.20160115ubuntu3 [739 kB] build 23-Apr-2019 17:31:42 Get:117 http://archive.ubuntu.com/ubuntu xenial/main amd64 liburi-perl all 1.71-1 [76.9 kB] build 23-Apr-2019 17:31:42 Get:118 http://archive.ubuntu.com/ubuntu xenial/main amd64 libencode-locale-perl all 1.05-1 [12.3 kB] build 23-Apr-2019 17:31:42 Get:119 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-date-perl all 6.02-1 [10.4 kB] build 23-Apr-2019 17:31:42 Get:120 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfile-listing-perl all 6.04-1 [9774 B] build 23-Apr-2019 17:31:42 Get:121 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhtml-tagset-perl all 3.20-2 [13.5 kB] build 23-Apr-2019 17:31:42 Get:122 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhtml-parser-perl amd64 3.72-1 [86.1 kB] build 23-Apr-2019 17:31:42 Get:123 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhtml-tree-perl all 5.03-2 [197 kB] build 23-Apr-2019 17:31:42 Get:124 http://archive.ubuntu.com/ubuntu xenial/main amd64 libio-html-perl all 1.001-1 [14.9 kB] build 23-Apr-2019 17:31:42 Get:125 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblwp-mediatypes-perl all 6.02-1 [21.7 kB] build 23-Apr-2019 17:31:42 Get:126 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-message-perl all 6.11-1 [74.3 kB] build 23-Apr-2019 17:31:42 Get:127 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-cookies-perl all 6.01-1 [17.2 kB] build 23-Apr-2019 17:31:42 Get:128 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-negotiate-perl all 6.00-2 [13.4 kB] build 23-Apr-2019 17:31:42 Get:129 http://archive.ubuntu.com/ubuntu xenial/main amd64 libnet-ssleay-perl amd64 1.72-1build1 [259 kB] build 23-Apr-2019 17:31:42 Get:130 http://archive.ubuntu.com/ubuntu xenial/main amd64 libio-socket-ssl-perl all 2.024-1 [159 kB] build 23-Apr-2019 17:31:42 Get:131 http://archive.ubuntu.com/ubuntu xenial/main amd64 libnet-http-perl all 6.09-1 [24.0 kB] build 23-Apr-2019 17:31:42 Get:132 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblwp-protocol-https-perl all 6.06-2 [8682 B] build 23-Apr-2019 17:31:42 Get:133 http://archive.ubuntu.com/ubuntu xenial/main amd64 libwww-robotrules-perl all 6.01-1 [14.1 kB] build 23-Apr-2019 17:31:42 Get:134 http://archive.ubuntu.com/ubuntu xenial/main amd64 libwww-perl all 6.15-1 [146 kB] build 23-Apr-2019 17:31:42 Get:135 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxml-parser-perl amd64 2.44-1build1 [200 kB] build 23-Apr-2019 17:31:42 Get:136 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 intltool all 0.51.0-2ubuntu1.16.04.1 [45.0 kB] build 23-Apr-2019 17:31:42 Get:137 http://archive.ubuntu.com/ubuntu xenial/main amd64 dh-translations all 129 [22.1 kB] build 23-Apr-2019 17:31:42 Get:138 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-six all 1.10.0-3 [10.9 kB] build 23-Apr-2019 17:31:42 Get:139 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-pkg-resources all 20.7.0-1 [108 kB] build 23-Apr-2019 17:31:42 Get:140 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-scour all 0.32-1 [42.7 kB] build 23-Apr-2019 17:31:42 Get:141 http://archive.ubuntu.com/ubuntu xenial/main amd64 cdbs all 0.4.130ubuntu2 [42.8 kB] build 23-Apr-2019 17:31:42 Get:142 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran3 amd64 5.4.0-6ubuntu1~16.04.11 [260 kB] build 23-Apr-2019 17:31:42 Get:143 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran-5-dev amd64 5.4.0-6ubuntu1~16.04.11 [291 kB] build 23-Apr-2019 17:31:42 Get:144 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gfortran-5 amd64 5.4.0-6ubuntu1~16.04.11 [8034 kB] build 23-Apr-2019 17:31:43 Get:145 http://archive.ubuntu.com/ubuntu xenial/main amd64 gfortran amd64 4:5.3.1-1ubuntu1 [1288 B] build 23-Apr-2019 17:31:43 Get:146 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 icu-devtools amd64 55.1-7ubuntu0.4 [166 kB] build 23-Apr-2019 17:31:43 Get:147 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas-common amd64 3.6.0-2ubuntu2 [5342 B] build 23-Apr-2019 17:31:43 Get:148 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xenial/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B] build 23-Apr-2019 17:31:43 Get:164 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblapack3 amd64 3.6.0-2ubuntu2 [1938 kB] build 23-Apr-2019 17:31:43 Get:165 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblapack-dev amd64 3.6.0-2ubuntu2 [1948 kB] build 23-Apr-2019 17:31:43 Get:166 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtinfo-dev amd64 6.0+20160213-1ubuntu1 [77.4 kB] build 23-Apr-2019 17:31:43 Get:167 http://archive.ubuntu.com/ubuntu xenial/main amd64 libncurses5-dev amd64 6.0+20160213-1ubuntu1 [175 kB] build 23-Apr-2019 17:31:43 Get:168 http://archive.ubuntu.com/ubuntu xenial/main amd64 libthai-data all 0.1.24-2 [131 kB] build 23-Apr-2019 17:31:43 Get:169 http://archive.ubuntu.com/ubuntu xenial/main amd64 libthai0 amd64 0.1.24-2 [17.3 kB] build 23-Apr-2019 17:31:43 Get:170 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpango-1.0-0 amd64 1.38.1-1 [148 kB] build 23-Apr-2019 17:31:43 Get:171 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pkg-config amd64 0.29.1-0ubuntu1 [45.0 kB] build 23-Apr-2019 17:31:44 Get:187 http://archive.ubuntu.com/ubuntu xenial/main amd64 zip amd64 3.0-11 [158 kB] build 23-Apr-2019 17:31:44 Get:188 http://archive.ubuntu.com/ubuntu xenial/main amd64 unzip amd64 6.0-20ubuntu1 [158 kB] build 23-Apr-2019 17:31:44 Get:189 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 xdg-utils all 1.1.1-1ubuntu1.16.04.3 [59.6 kB] build 23-Apr-2019 17:31:44 Get:190 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblzma-dev amd64 5.1.1alpha+20120614-2ubuntu2 [137 kB] build 23-Apr-2019 17:31:44 debconf: delaying package configuration, since apt-utils is not installed build 23-Apr-2019 17:31:44 Fetched 116 MB in 6s (17.8 MB/s) build 23-Apr-2019 17:31:45 Selecting previously unselected package libgdbm3:amd64. build 23-Apr-2019 17:31:45 (Reading database ... build 23-Apr-2019 17:31:45 (Reading database ... 5% build 23-Apr-2019 17:31:45 (Reading database ... 10% build 23-Apr-2019 17:31:45 (Reading 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currently installed.) build 23-Apr-2019 17:31:45 Preparing to unpack .../libgdbm3_1.8.3-13.1_amd64.deb ... build 23-Apr-2019 17:31:45 Unpacking libgdbm3:amd64 (1.8.3-13.1) ... build 23-Apr-2019 17:31:46 Selecting previously unselected package libglib2.0-0:amd64. build 23-Apr-2019 17:31:46 Preparing to unpack .../libglib2.0-0_2.48.2-0ubuntu4.1_amd64.deb ... build 23-Apr-2019 17:31:46 Unpacking libglib2.0-0:amd64 (2.48.2-0ubuntu4.1) ... build 23-Apr-2019 17:31:47 Selecting previously unselected package libxau6:amd64. build 23-Apr-2019 17:31:47 Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... build 23-Apr-2019 17:31:47 Unpacking libxau6:amd64 (1:1.0.8-1) ... build 23-Apr-2019 17:31:48 Selecting previously unselected package libxdmcp6:amd64. build 23-Apr-2019 17:31:48 Preparing to unpack .../libxdmcp6_1%3a1.1.2-1.1_amd64.deb ... build 23-Apr-2019 17:31:48 Unpacking libxdmcp6:amd64 (1:1.1.2-1.1) ... build 23-Apr-2019 17:31:49 Selecting previously unselected package libxcb1:amd64. 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build 23-Apr-2019 17:31:55 Unpacking fonts-dejavu-core (2.35-1) ... build 23-Apr-2019 17:31:56 Selecting previously unselected package ucf. build 23-Apr-2019 17:31:56 Preparing to unpack .../archives/ucf_3.0036_all.deb ... build 23-Apr-2019 17:31:56 Moving old data out of the way build 23-Apr-2019 17:31:56 Unpacking ucf (3.0036) ... build 23-Apr-2019 17:31:57 Selecting previously unselected package fontconfig-config. build 23-Apr-2019 17:31:57 Preparing to unpack .../fontconfig-config_2.11.94-0ubuntu1.1_all.deb ... build 23-Apr-2019 17:31:57 Unpacking fontconfig-config (2.11.94-0ubuntu1.1) ... build 23-Apr-2019 17:31:58 Selecting previously unselected package libpng12-0:amd64. build 23-Apr-2019 17:31:58 Preparing to unpack .../libpng12-0_1.2.54-1ubuntu1.1_amd64.deb ... build 23-Apr-2019 17:31:58 Unpacking libpng12-0:amd64 (1.2.54-1ubuntu1.1) ... build 23-Apr-2019 17:31:58 Selecting previously unselected package libfreetype6:amd64. build 23-Apr-2019 17:31:58 Preparing to unpack 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Selecting previously unselected package libice6:amd64. build 23-Apr-2019 17:32:01 Preparing to unpack .../libice6_2%3a1.0.9-1_amd64.deb ... build 23-Apr-2019 17:32:01 Unpacking libice6:amd64 (2:1.0.9-1) ... build 23-Apr-2019 17:32:02 Selecting previously unselected package libjpeg-turbo8:amd64. build 23-Apr-2019 17:32:02 Preparing to unpack .../libjpeg-turbo8_1.4.2-0ubuntu3.1_amd64.deb ... build 23-Apr-2019 17:32:02 Unpacking libjpeg-turbo8:amd64 (1.4.2-0ubuntu3.1) ... build 23-Apr-2019 17:32:03 Selecting previously unselected package libpcrecpp0v5:amd64. build 23-Apr-2019 17:32:03 Preparing to unpack .../libpcrecpp0v5_2%3a8.38-3.1_amd64.deb ... build 23-Apr-2019 17:32:03 Unpacking libpcrecpp0v5:amd64 (2:8.38-3.1) ... build 23-Apr-2019 17:32:04 Selecting previously unselected package libsigsegv2:amd64. build 23-Apr-2019 17:32:04 Preparing to unpack .../libsigsegv2_2.10-4_amd64.deb ... build 23-Apr-2019 17:32:04 Unpacking libsigsegv2:amd64 (2.10-4) ... build 23-Apr-2019 17:32:04 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previously unselected package libxss1:amd64. build 23-Apr-2019 17:32:08 Preparing to unpack .../libxss1_1%3a1.2.2-1_amd64.deb ... build 23-Apr-2019 17:32:08 Unpacking libxss1:amd64 (1:1.2.2-1) ... build 23-Apr-2019 17:32:09 Selecting previously unselected package perl-modules-5.22. build 23-Apr-2019 17:32:09 Preparing to unpack .../perl-modules-5.22_5.22.1-9ubuntu0.6_all.deb ... build 23-Apr-2019 17:32:09 Unpacking perl-modules-5.22 (5.22.1-9ubuntu0.6) ... build 23-Apr-2019 17:32:11 Selecting previously unselected package libperl5.22:amd64. build 23-Apr-2019 17:32:11 Preparing to unpack .../libperl5.22_5.22.1-9ubuntu0.6_amd64.deb ... build 23-Apr-2019 17:32:11 Unpacking libperl5.22:amd64 (5.22.1-9ubuntu0.6) ... build 23-Apr-2019 17:32:13 Selecting previously unselected package perl. build 23-Apr-2019 17:32:13 Preparing to unpack .../perl_5.22.1-9ubuntu0.6_amd64.deb ... build 23-Apr-2019 17:32:13 Unpacking perl (5.22.1-9ubuntu0.6) ... build 23-Apr-2019 17:32:14 Selecting previously 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libtcl8.6:amd64 (8.6.5+dfsg-2) ... build 23-Apr-2019 17:34:01 Selecting previously unselected package libtiff5:amd64. build 23-Apr-2019 17:34:01 Preparing to unpack .../libtiff5_4.0.6-1ubuntu0.6_amd64.deb ... build 23-Apr-2019 17:34:01 Unpacking libtiff5:amd64 (4.0.6-1ubuntu0.6) ... build 23-Apr-2019 17:34:02 Selecting previously unselected package libtk8.6:amd64. build 23-Apr-2019 17:34:02 Preparing to unpack .../libtk8.6_8.6.5-1_amd64.deb ... build 23-Apr-2019 17:34:02 Unpacking libtk8.6:amd64 (8.6.5-1) ... build 23-Apr-2019 17:34:04 Selecting previously unselected package libxt6:amd64. build 23-Apr-2019 17:34:04 Preparing to unpack .../libxt6_1%3a1.1.5-0ubuntu1_amd64.deb ... build 23-Apr-2019 17:34:04 Unpacking libxt6:amd64 (1:1.1.5-0ubuntu1) ... build 23-Apr-2019 17:34:04 Selecting previously unselected package pkg-config. build 23-Apr-2019 17:34:04 Preparing to unpack .../pkg-config_0.29.1-0ubuntu1_amd64.deb ... build 23-Apr-2019 17:34:04 Unpacking pkg-config (0.29.1-0ubuntu1) ... build 23-Apr-2019 17:34:05 Selecting previously unselected package zip. build 23-Apr-2019 17:34:05 Preparing to unpack .../archives/zip_3.0-11_amd64.deb ... build 23-Apr-2019 17:34:05 Unpacking zip (3.0-11) ... build 23-Apr-2019 17:34:05 Selecting previously unselected package unzip. build 23-Apr-2019 17:34:05 Preparing to unpack .../unzip_6.0-20ubuntu1_amd64.deb ... build 23-Apr-2019 17:34:05 Unpacking unzip (6.0-20ubuntu1) ... build 23-Apr-2019 17:34:06 Selecting previously unselected package xdg-utils. build 23-Apr-2019 17:34:06 Preparing to unpack .../xdg-utils_1.1.1-1ubuntu1.16.04.3_all.deb ... build 23-Apr-2019 17:34:06 Unpacking xdg-utils (1.1.1-1ubuntu1.16.04.3) ... build 23-Apr-2019 17:34:07 Selecting previously unselected package r-base-core. build 23-Apr-2019 17:34:07 Preparing to unpack .../r-base-core_3.4.4-1xenial0_amd64.deb ... build 23-Apr-2019 17:34:07 Unpacking r-base-core (3.4.4-1xenial0) ... build 23-Apr-2019 17:34:11 Selecting previously unselected package liblzma-dev:amd64. build 23-Apr-2019 17:34:11 Preparing to unpack .../liblzma-dev_5.1.1alpha+20120614-2ubuntu2_amd64.deb ... build 23-Apr-2019 17:34:11 Unpacking liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... build 23-Apr-2019 17:34:12 Selecting previously unselected package r-base-dev. build 23-Apr-2019 17:34:12 Preparing to unpack .../r-base-dev_3.4.4-1xenial0_all.deb ... build 23-Apr-2019 17:34:12 Unpacking r-base-dev (3.4.4-1xenial0) ... build 23-Apr-2019 17:34:12 Processing triggers for libc-bin (2.23-0ubuntu11) ... build 23-Apr-2019 17:34:12 Processing triggers for mime-support (3.59ubuntu1) ... build 23-Apr-2019 17:34:12 Processing triggers for systemd (229-4ubuntu21.16) ... build 23-Apr-2019 17:34:12 Setting up libgdbm3:amd64 (1.8.3-13.1) ... build 23-Apr-2019 17:34:13 Setting up libglib2.0-0:amd64 (2.48.2-0ubuntu4.1) ... build 23-Apr-2019 17:34:13 No schema files found: doing nothing. build 23-Apr-2019 17:34:13 Setting up libxau6:amd64 (1:1.0.8-1) ... build 23-Apr-2019 17:34:14 Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... build 23-Apr-2019 17:34:14 Setting up libxcb1:amd64 (1.11.1-1ubuntu1) ... build 23-Apr-2019 17:34:14 Setting up libx11-data (2:1.6.3-1ubuntu2.1) ... build 23-Apr-2019 17:34:14 Setting up libx11-6:amd64 (2:1.6.3-1ubuntu2.1) ... build 23-Apr-2019 17:34:15 Setting up libxext6:amd64 (2:1.3.3-1) ... build 23-Apr-2019 17:34:15 Setting up groff-base (1.22.3-7) ... build 23-Apr-2019 17:34:15 Setting up bsdmainutils (9.0.6ubuntu3) ... build 23-Apr-2019 17:34:16 update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode build 23-Apr-2019 17:34:16 update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode build 23-Apr-2019 17:34:16 Setting up libpipeline1:amd64 (1.4.1-2) ... build 23-Apr-2019 17:34:16 Setting up man-db (2.7.5-1) ... build 23-Apr-2019 17:34:16 debconf: unable to initialize frontend: Dialog build 23-Apr-2019 17:34:16 debconf: (TERM is not set, so the dialog frontend is not usable.) build 23-Apr-2019 17:34:16 debconf: falling back to frontend: Readline build 23-Apr-2019 17:34:16 Building database of manual pages ... build 23-Apr-2019 17:34:27 Setting up fonts-dejavu-core (2.35-1) ... build 23-Apr-2019 17:34:29 Setting up ucf (3.0036) ... build 23-Apr-2019 17:34:29 debconf: unable to initialize frontend: Dialog build 23-Apr-2019 17:34:29 debconf: (TERM is not set, so the dialog frontend is not usable.) build 23-Apr-2019 17:34:29 debconf: falling back to frontend: Readline build 23-Apr-2019 17:34:29 Setting up fontconfig-config (2.11.94-0ubuntu1.1) ... build 23-Apr-2019 17:34:33 Setting up libpng12-0:amd64 (1.2.54-1ubuntu1.1) ... build 23-Apr-2019 17:34:33 Setting up libfreetype6:amd64 (2.6.1-0.1ubuntu2.3) ... build 23-Apr-2019 17:34:33 Setting up libfontconfig1:amd64 (2.11.94-0ubuntu1.1) ... build 23-Apr-2019 17:34:33 Setting up fontconfig (2.11.94-0ubuntu1.1) ... build 23-Apr-2019 17:34:35 Regenerating fonts cache... done. build 23-Apr-2019 17:34:36 Setting up x11-common (1:7.7+13ubuntu3.1) ... build 23-Apr-2019 17:34:37 debconf: unable to initialize frontend: Dialog build 23-Apr-2019 17:34:37 debconf: (TERM is not set, so the dialog frontend is not usable.) build 23-Apr-2019 17:34:37 debconf: falling back to frontend: Readline build 23-Apr-2019 17:34:37 update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults build 23-Apr-2019 17:34:37 invoke-rc.d: could not determine current runlevel build 23-Apr-2019 17:34:37 invoke-rc.d: policy-rc.d denied execution of start. build 23-Apr-2019 17:34:37 Setting up libice6:amd64 (2:1.0.9-1) ... build 23-Apr-2019 17:34:37 Setting up libjpeg-turbo8:amd64 (1.4.2-0ubuntu3.1) ... build 23-Apr-2019 17:34:37 Setting up libpcrecpp0v5:amd64 (2:8.38-3.1) ... build 23-Apr-2019 17:34:37 Setting up libsigsegv2:amd64 (2.10-4) ... build 23-Apr-2019 17:34:37 Setting up libsm6:amd64 (2:1.2.2-1) ... build 23-Apr-2019 17:34:38 Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... build 23-Apr-2019 17:34:38 Setting up libxrender1:amd64 (1:0.9.9-0ubuntu1) ... build 23-Apr-2019 17:34:38 Setting up libxft2:amd64 (2.3.2-1) ... build 23-Apr-2019 17:34:39 Setting up libxss1:amd64 (1:1.2.2-1) ... build 23-Apr-2019 17:34:39 Setting up perl-modules-5.22 (5.22.1-9ubuntu0.6) ... build 23-Apr-2019 17:34:39 Setting up libperl5.22:amd64 (5.22.1-9ubuntu0.6) ... build 23-Apr-2019 17:34:40 Setting up perl (5.22.1-9ubuntu0.6) ... build 23-Apr-2019 17:34:40 update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode build 23-Apr-2019 17:34:40 Setting up libjbig0:amd64 (2.1-3.1) ... build 23-Apr-2019 17:34:40 Setting up libgmp10:amd64 (2:6.1.0+dfsg-2) ... build 23-Apr-2019 17:34:40 Setting up libmpfr4:amd64 (3.1.4-1) ... build 23-Apr-2019 17:34:41 Setting up libmpc3:amd64 (1.0.3-1) ... build 23-Apr-2019 17:34:41 Setting up tzdata (2018i-0ubuntu0.16.04) ... build 23-Apr-2019 17:34:41 debconf: unable to initialize frontend: Dialog build 23-Apr-2019 17:34:41 debconf: (TERM is not set, so the dialog frontend is not usable.) build 23-Apr-2019 17:34:41 debconf: falling back to frontend: Readline build 23-Apr-2019 17:34:41 build 23-Apr-2019 17:34:41 Current default time zone: 'Etc/UTC' build 23-Apr-2019 17:34:41 Local time is now: Tue Apr 23 22:34:41 UTC 2019. build 23-Apr-2019 17:34:41 Universal Time is now: Tue Apr 23 22:34:41 UTC 2019. build 23-Apr-2019 17:34:41 Run 'dpkg-reconfigure tzdata' if you wish to change it. build 23-Apr-2019 17:34:41 build 23-Apr-2019 17:34:41 Setting up bzip2 (1.0.6-8) ... build 23-Apr-2019 17:34:42 Setting up libmagic1:amd64 (1:5.25-2ubuntu1.2) ... build 23-Apr-2019 17:34:42 Setting up file (1:5.25-2ubuntu1.2) ... build 23-Apr-2019 17:34:43 Setting up libnettle6:amd64 (3.2-1ubuntu0.16.04.1) ... build 23-Apr-2019 17:34:43 Setting up libhogweed4:amd64 (3.2-1ubuntu0.16.04.1) ... build 23-Apr-2019 17:34:43 Setting up libidn11:amd64 (1.32-3ubuntu1.2) ... build 23-Apr-2019 17:34:43 Setting up libp11-kit0:amd64 (0.23.2-5~ubuntu16.04.1) ... build 23-Apr-2019 17:34:43 Setting up libtasn1-6:amd64 (4.7-3ubuntu0.16.04.3) ... build 23-Apr-2019 17:34:44 Setting up libgnutls30:amd64 (3.4.10-4ubuntu1.4) ... build 23-Apr-2019 17:34:44 Setting up netbase (5.3) ... build 23-Apr-2019 17:34:44 Setting up libasprintf0v5:amd64 (0.19.7-2ubuntu3.1) ... build 23-Apr-2019 17:34:45 Setting up gettext-base (0.19.7-2ubuntu3.1) ... build 23-Apr-2019 17:34:45 Setting up libroken18-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 23-Apr-2019 17:34:45 Setting up libasn1-8-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 23-Apr-2019 17:34:46 Setting up libkrb5support0:amd64 (1.13.2+dfsg-5ubuntu2.1) ... build 23-Apr-2019 17:34:46 Setting up libk5crypto3:amd64 (1.13.2+dfsg-5ubuntu2.1) ... build 23-Apr-2019 17:34:46 Setting up libkeyutils1:amd64 (1.5.9-8ubuntu1) ... build 23-Apr-2019 17:34:46 Setting up libkrb5-3:amd64 (1.13.2+dfsg-5ubuntu2.1) ... build 23-Apr-2019 17:34:47 Setting up libgssapi-krb5-2:amd64 (1.13.2+dfsg-5ubuntu2.1) ... build 23-Apr-2019 17:34:47 Setting up libhcrypto4-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 23-Apr-2019 17:34:47 Setting up libheimbase1-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 23-Apr-2019 17:34:47 Setting up libwind0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 23-Apr-2019 17:34:48 Setting up libhx509-5-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 23-Apr-2019 17:34:48 Setting up libkrb5-26-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 23-Apr-2019 17:34:48 Setting up libheimntlm0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 23-Apr-2019 17:34:49 Setting up libgssapi3-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... build 23-Apr-2019 17:34:49 Setting up libicu55:amd64 (55.1-7ubuntu0.4) ... build 23-Apr-2019 17:34:49 Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-14ubuntu0.1) ... build 23-Apr-2019 17:34:49 Setting up libsasl2-2:amd64 (2.1.26.dfsg1-14ubuntu0.1) ... build 23-Apr-2019 17:34:50 Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2ubuntu3.4) ... build 23-Apr-2019 17:34:50 Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d-1ubuntu0.1) ... build 23-Apr-2019 17:34:50 Setting up libxml2:amd64 (2.9.3+dfsg1-1ubuntu0.6) ... build 23-Apr-2019 17:34:50 Setting up libxmuu1:amd64 (2:1.1.2-2) ... build 23-Apr-2019 17:34:50 Setting up xauth (1:1.0.9-1ubuntu2) ... build 23-Apr-2019 17:34:51 Setting up m4 (1.4.17-5) ... build 23-Apr-2019 17:34:51 Setting up autoconf (2.69-9) ... build 23-Apr-2019 17:34:52 Setting up autotools-dev (20150820.1) ... build 23-Apr-2019 17:34:52 Setting up automake (1:1.15-4ubuntu1) ... build 23-Apr-2019 17:34:52 update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode build 23-Apr-2019 17:34:52 Setting up binutils (2.26.1-1ubuntu1~16.04.8) ... build 23-Apr-2019 17:34:52 Setting up libc-dev-bin (2.23-0ubuntu11) ... build 23-Apr-2019 17:34:53 Setting up linux-libc-dev:amd64 (4.4.0-146.172) ... build 23-Apr-2019 17:34:53 Setting up libc6-dev:amd64 (2.23-0ubuntu11) ... build 23-Apr-2019 17:34:53 Setting up libisl15:amd64 (0.16.1-1) ... build 23-Apr-2019 17:34:53 Setting up cpp-5 (5.4.0-6ubuntu1~16.04.11) ... build 23-Apr-2019 17:34:54 Setting up cpp (4:5.3.1-1ubuntu1) ... build 23-Apr-2019 17:34:54 Setting up libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 23-Apr-2019 17:34:54 Setting up libgomp1:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 23-Apr-2019 17:34:55 Setting up libitm1:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 23-Apr-2019 17:34:55 Setting up libatomic1:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 23-Apr-2019 17:34:55 Setting up libasan2:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 23-Apr-2019 17:34:55 Setting up liblsan0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 23-Apr-2019 17:34:56 Setting up libtsan0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 23-Apr-2019 17:34:56 Setting up libubsan0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 23-Apr-2019 17:34:56 Setting up libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 23-Apr-2019 17:34:56 Setting up libmpx0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 23-Apr-2019 17:34:56 Setting up libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 23-Apr-2019 17:34:56 Setting up libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 23-Apr-2019 17:34:56 Setting up gcc-5 (5.4.0-6ubuntu1~16.04.11) ... build 23-Apr-2019 17:34:57 Setting up gcc (4:5.3.1-1ubuntu1) ... build 23-Apr-2019 17:34:57 Setting up libstdc++-5-dev:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 23-Apr-2019 17:34:57 Setting up g++-5 (5.4.0-6ubuntu1~16.04.11) ... build 23-Apr-2019 17:34:57 Setting up g++ (4:5.3.1-1ubuntu1) ... build 23-Apr-2019 17:34:57 update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode build 23-Apr-2019 17:34:57 Setting up make (4.1-6) ... build 23-Apr-2019 17:34:58 Setting up libdpkg-perl (1.18.4ubuntu1.5) ... build 23-Apr-2019 17:34:58 Setting up xz-utils (5.1.1alpha+20120614-2ubuntu2) ... build 23-Apr-2019 17:34:58 update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode build 23-Apr-2019 17:34:58 Setting up patch (2.7.5-1ubuntu0.16.04.1) ... build 23-Apr-2019 17:34:59 Setting up dpkg-dev (1.18.4ubuntu1.5) ... build 23-Apr-2019 17:34:59 Setting up build-essential (12.1ubuntu2) ... build 23-Apr-2019 17:34:59 Setting up libcroco3:amd64 (0.6.11-1) ... build 23-Apr-2019 17:35:00 Setting up gettext (0.19.7-2ubuntu3.1) ... build 23-Apr-2019 17:35:00 Setting up intltool-debian (0.35.0+20060710.4) ... build 23-Apr-2019 17:35:00 Setting up po-debconf (1.0.19) ... build 23-Apr-2019 17:35:00 Setting up libarchive-zip-perl (1.56-2ubuntu0.1) ... build 23-Apr-2019 17:35:01 Setting up libfile-stripnondeterminism-perl (0.015-1) ... build 23-Apr-2019 17:35:01 Setting up libtimedate-perl (2.3000-2) ... build 23-Apr-2019 17:35:01 Setting up liburi-perl (1.71-1) ... build 23-Apr-2019 17:35:02 Setting up libencode-locale-perl (1.05-1) ... build 23-Apr-2019 17:35:02 Setting up libhttp-date-perl (6.02-1) ... build 23-Apr-2019 17:35:02 Setting up libfile-listing-perl (6.04-1) ... build 23-Apr-2019 17:35:03 Setting up libhtml-tagset-perl (3.20-2) ... build 23-Apr-2019 17:35:03 Setting up libhtml-parser-perl (3.72-1) ... build 23-Apr-2019 17:35:03 Setting up libhtml-tree-perl (5.03-2) ... build 23-Apr-2019 17:35:03 Setting up libio-html-perl (1.001-1) ... build 23-Apr-2019 17:35:04 Setting up liblwp-mediatypes-perl (6.02-1) ... build 23-Apr-2019 17:35:04 Setting up libhttp-message-perl (6.11-1) ... build 23-Apr-2019 17:35:04 Setting up libhttp-cookies-perl (6.01-1) ... build 23-Apr-2019 17:35:04 Setting up libhttp-negotiate-perl (6.00-2) ... build 23-Apr-2019 17:35:04 Setting up libnet-ssleay-perl (1.72-1build1) ... build 23-Apr-2019 17:35:04 Setting up libio-socket-ssl-perl (2.024-1) ... build 23-Apr-2019 17:35:05 Setting up libnet-http-perl (6.09-1) ... build 23-Apr-2019 17:35:05 Setting up libwww-robotrules-perl (6.01-1) ... build 23-Apr-2019 17:35:06 Setting up python-six (1.10.0-3) ... build 23-Apr-2019 17:35:07 Setting up python-pkg-resources (20.7.0-1) ... build 23-Apr-2019 17:35:08 Setting up python-scour (0.32-1) ... build 23-Apr-2019 17:35:09 Setting up libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 23-Apr-2019 17:35:09 Setting up libgfortran-5-dev:amd64 (5.4.0-6ubuntu1~16.04.11) ... build 23-Apr-2019 17:35:10 Setting up gfortran-5 (5.4.0-6ubuntu1~16.04.11) ... build 23-Apr-2019 17:35:10 Setting up gfortran (4:5.3.1-1ubuntu1) ... build 23-Apr-2019 17:35:10 update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode build 23-Apr-2019 17:35:10 update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode build 23-Apr-2019 17:35:10 Setting up icu-devtools (55.1-7ubuntu0.4) ... build 23-Apr-2019 17:35:10 Setting up libblas-common (3.6.0-2ubuntu2) ... build 23-Apr-2019 17:35:10 Setting up libblas3 (3.6.0-2ubuntu2) ... build 23-Apr-2019 17:35:10 update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode build 23-Apr-2019 17:35:11 Setting up libblas-dev (3.6.0-2ubuntu2) ... build 23-Apr-2019 17:35:11 update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode build 23-Apr-2019 17:35:11 Setting up libbz2-dev:amd64 (1.0.6-8) ... build 23-Apr-2019 17:35:12 Setting up libpixman-1-0:amd64 (0.33.6-1) ... build 23-Apr-2019 17:35:12 Setting up libxcb-render0:amd64 (1.11.1-1ubuntu1) ... build 23-Apr-2019 17:35:12 Setting up libxcb-shm0:amd64 (1.11.1-1ubuntu1) ... build 23-Apr-2019 17:35:13 Setting up libcairo2:amd64 (1.14.6-1) ... build 23-Apr-2019 17:35:13 Setting up libcurl3:amd64 (7.47.0-1ubuntu2.12) ... build 23-Apr-2019 17:35:13 Setting up libdatrie1:amd64 (0.2.10-2) ... build 23-Apr-2019 17:35:13 Setting up libgraphite2-3:amd64 (1.3.10-0ubuntu0.16.04.1) ... build 23-Apr-2019 17:35:13 Setting up libharfbuzz0b:amd64 (1.0.1-1ubuntu0.1) ... build 23-Apr-2019 17:35:13 Setting up libicu-dev:amd64 (55.1-7ubuntu0.4) ... build 23-Apr-2019 17:35:13 Setting up libjpeg-turbo8-dev:amd64 (1.4.2-0ubuntu3.1) ... build 23-Apr-2019 17:35:14 Setting up libjpeg8:amd64 (8c-2ubuntu8) ... build 23-Apr-2019 17:35:14 Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... build 23-Apr-2019 17:35:14 Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... build 23-Apr-2019 17:35:14 Setting up liblapack3 (3.6.0-2ubuntu2) ... build 23-Apr-2019 17:35:14 update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode build 23-Apr-2019 17:35:14 Setting up liblapack-dev (3.6.0-2ubuntu2) ... build 23-Apr-2019 17:35:14 update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode build 23-Apr-2019 17:35:15 Setting up libtinfo-dev:amd64 (6.0+20160213-1ubuntu1) ... build 23-Apr-2019 17:35:15 Setting up libncurses5-dev:amd64 (6.0+20160213-1ubuntu1) ... build 23-Apr-2019 17:35:15 Setting up libthai-data (0.1.24-2) ... build 23-Apr-2019 17:35:15 Setting up libthai0:amd64 (0.1.24-2) ... build 23-Apr-2019 17:35:16 Setting up libpango-1.0-0:amd64 (1.38.1-1) ... build 23-Apr-2019 17:35:16 Setting up libpangoft2-1.0-0:amd64 (1.38.1-1) ... build 23-Apr-2019 17:35:16 Setting up libpangocairo-1.0-0:amd64 (1.38.1-1) ... build 23-Apr-2019 17:35:16 Setting up libpaper1:amd64 (1.1.24+nmu4ubuntu1) ... build 23-Apr-2019 17:35:17 debconf: unable to initialize frontend: Dialog build 23-Apr-2019 17:35:17 debconf: (TERM is not set, so the dialog frontend is not usable.) build 23-Apr-2019 17:35:17 debconf: falling back to frontend: Readline build 23-Apr-2019 17:35:17 build 23-Apr-2019 17:35:17 Creating config file /etc/papersize with new version build 23-Apr-2019 17:35:17 Setting up libpaper-utils (1.1.24+nmu4ubuntu1) ... build 23-Apr-2019 17:35:17 Setting up libpcre16-3:amd64 (2:8.38-3.1) ... build 23-Apr-2019 17:35:17 Setting up libpcre32-3:amd64 (2:8.38-3.1) ... build 23-Apr-2019 17:35:17 Setting up libpcre3-dev:amd64 (2:8.38-3.1) ... build 23-Apr-2019 17:35:18 Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4.1) ... build 23-Apr-2019 17:35:18 Setting up libpng12-dev:amd64 (1.2.54-1ubuntu1.1) ... build 23-Apr-2019 17:35:18 Setting up libreadline6-dev:amd64 (6.3-8ubuntu2) ... build 23-Apr-2019 17:35:19 Setting up libreadline-dev:amd64 (6.3-8ubuntu2) ... build 23-Apr-2019 17:35:19 Setting up libtcl8.6:amd64 (8.6.5+dfsg-2) ... build 23-Apr-2019 17:35:19 Setting up libtiff5:amd64 (4.0.6-1ubuntu0.6) ... build 23-Apr-2019 17:35:19 Setting up libtk8.6:amd64 (8.6.5-1) ... build 23-Apr-2019 17:35:20 Setting up libxt6:amd64 (1:1.1.5-0ubuntu1) ... build 23-Apr-2019 17:35:20 Setting up pkg-config (0.29.1-0ubuntu1) ... build 23-Apr-2019 17:35:20 Setting up zip (3.0-11) ... build 23-Apr-2019 17:35:20 Setting up unzip (6.0-20ubuntu1) ... build 23-Apr-2019 17:35:21 Setting up xdg-utils (1.1.1-1ubuntu1.16.04.3) ... build 23-Apr-2019 17:35:21 Setting up r-base-core (3.4.4-1xenial0) ... build 23-Apr-2019 17:35:22 debconf: unable to initialize frontend: Dialog build 23-Apr-2019 17:35:22 debconf: (TERM is not set, so the dialog frontend is not usable.) build 23-Apr-2019 17:35:22 debconf: falling back to frontend: Readline build 23-Apr-2019 17:35:22 build 23-Apr-2019 17:35:22 Creating config file /etc/R/Renviron with new version build 23-Apr-2019 17:35:22 Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... build 23-Apr-2019 17:35:23 Setting up debhelper (9.20160115ubuntu3) ... build 23-Apr-2019 17:35:23 Setting up libwww-perl (6.15-1) ... build 23-Apr-2019 17:35:23 Setting up libxml-parser-perl (2.44-1build1) ... build 23-Apr-2019 17:35:24 Setting up intltool (0.51.0-2ubuntu1.16.04.1) ... build 23-Apr-2019 17:35:24 Setting up dh-translations (129) ... build 23-Apr-2019 17:35:24 Setting up cdbs (0.4.130ubuntu2) ... build 23-Apr-2019 17:35:25 Setting up r-base-dev (3.4.4-1xenial0) ... build 23-Apr-2019 17:35:25 Setting up dh-strip-nondeterminism (0.015-1) ... build 23-Apr-2019 17:35:25 Setting up liblwp-protocol-https-perl (6.06-2) ... build 23-Apr-2019 17:35:25 Processing triggers for libc-bin (2.23-0ubuntu11) ... build 23-Apr-2019 17:35:25 Processing triggers for systemd (229-4ubuntu21.16) ... build 23-Apr-2019 17:35:26 Installing package into '/usr/local/lib/R/site-library' build 23-Apr-2019 17:35:26 (as 'lib' is unspecified) build 23-Apr-2019 17:35:26 trying URL 'http://cran.rstudio.com/src/contrib/jsonlite_1.6.tar.gz' build 23-Apr-2019 17:35:27 Content type 'application/x-gzip' length 1052728 bytes (1.0 MB) build 23-Apr-2019 17:35:27 ================================================== build 23-Apr-2019 17:35:27 downloaded 1.0 MB build 23-Apr-2019 17:35:27 build 23-Apr-2019 17:35:27 * installing *source* package 'jsonlite' ... build 23-Apr-2019 17:35:27 ** package 'jsonlite' successfully unpacked and MD5 sums checked build 23-Apr-2019 17:35:27 ** libs build 23-Apr-2019 17:35:27 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base64.c -o base64.o build 23-Apr-2019 17:35:27 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_array.c -o collapse_array.o build 23-Apr-2019 17:35:27 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_object.c -o collapse_object.o build 23-Apr-2019 17:35:27 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_pretty.c -o collapse_pretty.o build 23-Apr-2019 17:35:27 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c escape_chars.c -o escape_chars.o build 23-Apr-2019 17:35:27 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c integer64_to_na.c -o integer64_to_na.o build 23-Apr-2019 17:35:27 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_datelist.c -o is_datelist.o build 23-Apr-2019 17:35:28 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_recordlist.c -o is_recordlist.o build 23-Apr-2019 17:35:28 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_scalarlist.c -o is_scalarlist.o build 23-Apr-2019 17:35:28 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c modp_numtoa.c -o modp_numtoa.o build 23-Apr-2019 17:35:28 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c null_to_na.c -o null_to_na.o build 23-Apr-2019 17:35:28 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c num_to_char.c -o num_to_char.o build 23-Apr-2019 17:35:28 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c parse.c -o parse.o build 23-Apr-2019 17:35:28 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c prettify.c -o prettify.o build 23-Apr-2019 17:35:28 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c push_parser.c -o push_parser.o build 23-Apr-2019 17:35:28 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c r-base64.c -o r-base64.o build 23-Apr-2019 17:35:28 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c register.c -o register.o build 23-Apr-2019 17:35:28 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c row_collapse.c -o row_collapse.o build 23-Apr-2019 17:35:28 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transpose_list.c -o transpose_list.o build 23-Apr-2019 17:35:28 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c validate.c -o validate.o build 23-Apr-2019 17:35:28 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl.c -o yajl/yajl.o build 23-Apr-2019 17:35:28 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o build 23-Apr-2019 17:35:29 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_buf.c -o yajl/yajl_buf.o build 23-Apr-2019 17:35:29 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_encode.c -o yajl/yajl_encode.o build 23-Apr-2019 17:35:29 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_gen.c -o yajl/yajl_gen.o build 23-Apr-2019 17:35:29 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_lex.c -o yajl/yajl_lex.o build 23-Apr-2019 17:35:29 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_parser.c -o yajl/yajl_parser.o build 23-Apr-2019 17:35:29 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_tree.c -o yajl/yajl_tree.o build 23-Apr-2019 17:35:29 ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o build 23-Apr-2019 17:35:29 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/usr/lib/R/lib -lR build 23-Apr-2019 17:35:29 installing to /usr/local/lib/R/site-library/jsonlite/libs build 23-Apr-2019 17:35:29 ** R build 23-Apr-2019 17:35:29 ** inst build 23-Apr-2019 17:35:29 ** preparing package for lazy loading build 23-Apr-2019 17:35:30 ** help build 23-Apr-2019 17:35:30 *** installing help indices build 23-Apr-2019 17:35:30 ** building package indices build 23-Apr-2019 17:35:30 ** installing vignettes build 23-Apr-2019 17:35:30 ** testing if installed package can be loaded build 23-Apr-2019 17:35:30 * DONE (jsonlite) build 23-Apr-2019 17:35:30  build 23-Apr-2019 17:35:30 The downloaded source packages are in build 23-Apr-2019 17:35:30 '/tmp/RtmpHL3468/downloaded_packages' build 23-Apr-2019 17:35:30 [1] "/usr/local/lib/R/site-library/jsonlite" build 23-Apr-2019 17:35:37 Removing intermediate container db5b3e39fb9f build 23-Apr-2019 17:35:37 ---> 7e82008224ac build 23-Apr-2019 17:35:37 Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/ build 23-Apr-2019 17:35:38 ---> 87e1c868c36a build 23-Apr-2019 17:35:38 Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 23-Apr-2019 17:35:38 ---> Running in 0c27539c764c build 23-Apr-2019 17:35:38 Removing intermediate container 0c27539c764c build 23-Apr-2019 17:35:38 ---> 472ece8e94bd build 23-Apr-2019 17:35:38 Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 23-Apr-2019 17:35:39 ---> Running in e8457e6c2318 build 23-Apr-2019 17:35:39 Removing intermediate container e8457e6c2318 build 23-Apr-2019 17:35:39 ---> e7b0e1731d53 build 23-Apr-2019 17:35:39 Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ build 23-Apr-2019 17:35:39 ---> Running in d84fe42ebe73 build 23-Apr-2019 17:35:40 Removing intermediate container d84fe42ebe73 build 23-Apr-2019 17:35:40 ---> cb3dd8322b4e build 23-Apr-2019 17:35:40 Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi build 23-Apr-2019 17:35:40 ---> Running in 8bb49b3ebb90 build 23-Apr-2019 17:35:41 Removing intermediate container 8bb49b3ebb90 build 23-Apr-2019 17:35:41 ---> ce470c75b596 build 23-Apr-2019 17:35:41 Step 9/10 : ONBUILD ADD . /home/clowder/ build 23-Apr-2019 17:35:41 ---> Running in 222a8ce12d07 build 23-Apr-2019 17:35:42 Removing intermediate container 222a8ce12d07 build 23-Apr-2019 17:35:42 ---> f92109216ab0 build 23-Apr-2019 17:35:42 Step 10/10 : CMD python r_extractor.py build 23-Apr-2019 17:35:42 ---> Running in 059955b6cffc build 23-Apr-2019 17:35:43 Removing intermediate container 059955b6cffc build 23-Apr-2019 17:35:43 ---> c29b13cc9f82 build 23-Apr-2019 17:35:43 Successfully built c29b13cc9f82 build 23-Apr-2019 17:35:43 Successfully tagged clowder/extractors-simple-r-extractor:onbuild build 23-Apr-2019 17:35:43 Sending build context to Docker daemon 9.216kB build 23-Apr-2019 17:35:43 build 23-Apr-2019 17:35:43 Step 1/2 : FROM clowder/pyclowder:onbuild build 23-Apr-2019 17:35:43 # Executing 5 build triggers build 23-Apr-2019 17:35:44 ---> Running in 6871f79e93a8 build 23-Apr-2019 17:35:46 Removing intermediate container 6871f79e93a8 build 23-Apr-2019 17:35:47 ---> Running in b3c3699cb818 build 23-Apr-2019 17:35:49 Removing intermediate container b3c3699cb818 build 23-Apr-2019 17:35:50 ---> 0cf18c9707ff build 23-Apr-2019 17:35:50 Step 2/2 : ENV MAIN_SCRIPT="wordcount.py" build 23-Apr-2019 17:35:50 ---> Running in cd4809131846 build 23-Apr-2019 17:35:50 Removing intermediate container cd4809131846 build 23-Apr-2019 17:35:50 ---> 63b547681ccc build 23-Apr-2019 17:35:50 Successfully built 63b547681ccc build 23-Apr-2019 17:35:50 Successfully tagged clowder/extractors-wordcount:latest build 23-Apr-2019 17:35:50 Sending build context to Docker daemon 5.12kB build 23-Apr-2019 17:35:50 build 23-Apr-2019 17:35:50 Step 1/3 : FROM clowder/extractors-simple-extractor:onbuild build 23-Apr-2019 17:35:50 # Executing 5 build triggers build 23-Apr-2019 17:35:51 ---> Running in af9a0f9229d0 build 23-Apr-2019 17:35:53 Removing intermediate container af9a0f9229d0 build 23-Apr-2019 17:35:54 ---> Running in cb5bef46e7e4 build 23-Apr-2019 17:35:56 Removing intermediate container cb5bef46e7e4 build 23-Apr-2019 17:35:56 ---> 440fa0a741a1 build 23-Apr-2019 17:35:56 Step 2/3 : ENV EXTRACTION_FUNC="wordcount" build 23-Apr-2019 17:35:57 ---> Running in 3f46f7fa4439 build 23-Apr-2019 17:35:57 Removing intermediate container 3f46f7fa4439 build 23-Apr-2019 17:35:57 ---> 93368f19c51e build 23-Apr-2019 17:35:57 Step 3/3 : ENV EXTRACTION_MODULE="wordcount" build 23-Apr-2019 17:35:57 ---> Running in 1449f1b9b596 build 23-Apr-2019 17:35:58 Removing intermediate container 1449f1b9b596 build 23-Apr-2019 17:35:58 ---> 8bf9709187d8 build 23-Apr-2019 17:35:58 Successfully built 8bf9709187d8 build 23-Apr-2019 17:35:58 Successfully tagged clowder/extractors-wordcount-simple-extractor:latest build 23-Apr-2019 17:35:58 Sending build context to Docker daemon 5.12kB build 23-Apr-2019 17:35:58 build 23-Apr-2019 17:35:58 Step 1/2 : FROM clowder/extractors-simple-r-extractor:onbuild build 23-Apr-2019 17:35:58 # Executing 5 build triggers build 23-Apr-2019 17:35:58 ---> Running in 4933b185ea68 build 23-Apr-2019 17:36:01 Removing intermediate container 4933b185ea68 build 23-Apr-2019 17:36:02 ---> Running in 5c51dbbd420b build 23-Apr-2019 17:36:05 Removing intermediate container 5c51dbbd420b build 23-Apr-2019 17:36:05 ---> 5309caef5614 build 23-Apr-2019 17:36:05 Step 2/2 : ENV R_SCRIPT="wordcount.R" R_FUNCTION="process_file" build 23-Apr-2019 17:36:05 ---> Running in 0f03b92f9054 build 23-Apr-2019 17:36:10 Removing intermediate container 0f03b92f9054 build 23-Apr-2019 17:36:10 ---> 5b27355140f7 build 23-Apr-2019 17:36:10 Successfully built 5b27355140f7 build 23-Apr-2019 17:36:10 Successfully tagged clowder/extractors-wordcount-simple-r-extractor:latest simple 23-Apr-2019 17:36:10 Finished task 'docker build' with result: Success simple 23-Apr-2019 17:36:10 Starting task 'docker push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 23-Apr-2019 17:36:10 Beginning to execute external process for build 'Clowder - pyclowder2 - CATSPYC-19-add-anonymous-email-receiver-on-the-email-message - Default Job #1 (CATS-PYC296-JOB1-1)'\n ... running command line: \n/bin/sh release.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC296-JOB1\n ... using extra environment variables: 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Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC296-JOB1-1\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_agentId=140673028\nbamboo_planName=Clowder - pyclowder2 - CATSPYC-19-add-anonymous-email-receiver-on-the-email-message\nbamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_6=/home/bamboo/bamboo-agent-home/temp/CATS-PYC296-JOB1-1-ScriptBuildTask-8397302722315111294.sh\nbamboo_shortPlanKey=PYC296\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_shortJobKey=JOB1\nbamboo_planRepository_revision=7e8ea5b3b5c80bacdfca5069f13e77f255c47662\nbamboo_buildTimeStamp=2019-04-23T17:29:48.816-05:00\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_3=/home/bamboo/bamboo-agent-home/temp/CATS-PYC296-JOB1-1-ScriptBuildTask-7142268027833148048.sh\nbamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_2=/bin/sh docker.sh\nbamboo_repository_git_branch=CATSPYC-19-add-anonymous-email-receiver-on-the-email-message\nbamboo_buildResultKey=CATS-PYC296-JOB1-1\nbamboo_repository_branch_name=CATSPYC-19-add-anonymous-email-receiver-on-the-email-message\nbamboo_buildPlanName=Clowder - pyclowder2 - CATSPYC-19-add-anonymous-email-receiver-on-the-email-message - Default Job\nbamboo_planRepository_1_revision=7e8ea5b3b5c80bacdfca5069f13e77f255c47662\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=pyclowder2\nbamboo_buildFailed=false\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_branch=CATSPYC-19-add-anonymous-email-receiver-on-the-email-message\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_planRepository_branchDisplayName=CATSPYC-19-add-anonymous-email-receiver-on-the-email-message\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=CATSPYC-19-add-anonymous-email-receiver-on-the-email-message\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-170328101\nbamboo_repository_170524691_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_repository_170524691_name=pyclowder2\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC296-JOB1\nbamboo_planKey=CATS-PYC296\nbamboo_repository_170524691_git_username=\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_1_branchName=CATSPYC-19-add-anonymous-email-receiver-on-the-email-message\n build 23-Apr-2019 17:36:10 Sending build context to Docker daemon 258.6kB build 23-Apr-2019 17:36:10 build 23-Apr-2019 17:36:10 Step 1/9 : FROM ubuntu:16.04 build 23-Apr-2019 17:36:10 ---> 9361ce633ff1 build 23-Apr-2019 17:36:10 Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="sender" EMAIL_RECEIVER="receiver" MAIN_SCRIPT="" build 23-Apr-2019 17:36:10 ---> Using cache build 23-Apr-2019 17:36:10 ---> 23c0ef0d3d6c build 23-Apr-2019 17:36:10 Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* build 23-Apr-2019 17:36:10 ---> Using cache build 23-Apr-2019 17:36:10 ---> 0de04aeb6e12 build 23-Apr-2019 17:36:10 Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder build 23-Apr-2019 17:36:10 ---> Using cache build 23-Apr-2019 17:36:10 ---> 5106d1670a56 build 23-Apr-2019 17:36:10 Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/ build 23-Apr-2019 17:36:10 ---> Using cache build 23-Apr-2019 17:36:10 ---> 695efc5087fd build 23-Apr-2019 17:36:10 Step 6/9 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder build 23-Apr-2019 17:36:10 ---> Using cache build 23-Apr-2019 17:36:10 ---> 60c1b21de5b5 build 23-Apr-2019 17:36:10 Step 7/9 : WORKDIR /home/clowder build 23-Apr-2019 17:36:10 ---> Using cache build 23-Apr-2019 17:36:10 ---> b392f14d39b1 build 23-Apr-2019 17:36:10 Step 8/9 : COPY notifications.json /home/clowder build 23-Apr-2019 17:36:10 ---> Using cache build 23-Apr-2019 17:36:10 ---> 233e59beaa57 build 23-Apr-2019 17:36:10 Step 9/9 : CMD python "./${MAIN_SCRIPT}" build 23-Apr-2019 17:36:10 ---> Using cache build 23-Apr-2019 17:36:10 ---> 81a1253337e6 build 23-Apr-2019 17:36:10 Successfully built 81a1253337e6 build 23-Apr-2019 17:36:10 Successfully tagged clowder/pyclowder:latest build 23-Apr-2019 17:36:10 Sending build context to Docker daemon 257kB build 23-Apr-2019 17:36:10 build 23-Apr-2019 17:36:10 Step 1/6 : FROM clowder/pyclowder build 23-Apr-2019 17:36:10 ---> 81a1253337e6 build 23-Apr-2019 17:36:10 Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 23-Apr-2019 17:36:10 ---> Using cache build 23-Apr-2019 17:36:10 ---> e00f203ee9da build 23-Apr-2019 17:36:10 Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 23-Apr-2019 17:36:10 ---> Using cache build 23-Apr-2019 17:36:10 ---> 7174f340729e build 23-Apr-2019 17:36:10 Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 23-Apr-2019 17:36:10 ---> Using cache build 23-Apr-2019 17:36:10 ---> cdd885ca5621 build 23-Apr-2019 17:36:10 Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 23-Apr-2019 17:36:10 ---> Using cache build 23-Apr-2019 17:36:10 ---> 78f206a3c1fd build 23-Apr-2019 17:36:10 Step 6/6 : ONBUILD ADD . /home/clowder/ build 23-Apr-2019 17:36:10 ---> Using cache build 23-Apr-2019 17:36:10 ---> 66386c1d8f1d build 23-Apr-2019 17:36:10 Successfully built 66386c1d8f1d build 23-Apr-2019 17:36:10 Successfully tagged clowder/pyclowder:onbuild build 23-Apr-2019 17:36:10 Sending build context to Docker daemon 12.29kB build 23-Apr-2019 17:36:10 build 23-Apr-2019 17:36:10 Step 1/5 : FROM clowder/pyclowder:onbuild build 23-Apr-2019 17:36:10 # Executing 5 build triggers build 23-Apr-2019 17:36:10 ---> Using cache build 23-Apr-2019 17:36:10 ---> Using cache build 23-Apr-2019 17:36:10 ---> Using cache build 23-Apr-2019 17:36:10 ---> Using cache build 23-Apr-2019 17:36:10 ---> Using cache build 23-Apr-2019 17:36:10 ---> fac3931304f7 build 23-Apr-2019 17:36:10 Step 2/5 : ENV MAIN_SCRIPT="binary_extractor.py" RABBITMQ_QUEUE="" IMAGE_BINARY="" IMAGE_TYPE="" IMAGE_THUMBNAIL_COMMAND="" IMAGE_PREVIEW_COMMAND="" PREVIEW_BINARY="" PREVIEW_TYPE="" PREVIEW_COMMAND="" build 23-Apr-2019 17:36:10 ---> Using cache build 23-Apr-2019 17:36:10 ---> 8aba924e2082 build 23-Apr-2019 17:36:10 Step 3/5 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 23-Apr-2019 17:36:10 ---> Using cache build 23-Apr-2019 17:36:10 ---> 826aaa2aa026 build 23-Apr-2019 17:36:10 Step 4/5 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 23-Apr-2019 17:36:10 ---> Using cache build 23-Apr-2019 17:36:10 ---> f8b35c42040b build 23-Apr-2019 17:36:10 Step 5/5 : ONBUILD COPY extractor_info.json /home/clowder/ build 23-Apr-2019 17:36:10 ---> Using cache build 23-Apr-2019 17:36:10 ---> e17204201541 build 23-Apr-2019 17:36:10 Successfully built e17204201541 build 23-Apr-2019 17:36:11 Successfully tagged clowder/extractors-binary-preview:onbuild build 23-Apr-2019 17:36:11 Sending build context to Docker daemon 6.656kB build 23-Apr-2019 17:36:11 build 23-Apr-2019 17:36:11 Step 1/9 : FROM clowder/pyclowder:onbuild build 23-Apr-2019 17:36:11 # Executing 5 build triggers build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> 52303a8953fa build 23-Apr-2019 17:36:11 Step 2/9 : ENV EXTRACTION_FUNC="" build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> 3faaa0ee5ced build 23-Apr-2019 17:36:11 Step 3/9 : ENV EXTRACTION_MODULE="" build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> 53eb34c7aac6 build 23-Apr-2019 17:36:11 Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> af35ffbb2a22 build 23-Apr-2019 17:36:11 Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> ef83a491d249 build 23-Apr-2019 17:36:11 Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> 5ef4e7d0a767 build 23-Apr-2019 17:36:11 Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> 3044e70b8357 build 23-Apr-2019 17:36:11 Step 8/9 : ONBUILD ADD . /home/clowder/ build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> a8e2358eb08f build 23-Apr-2019 17:36:11 Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> f94c931d6c4e build 23-Apr-2019 17:36:11 Successfully built f94c931d6c4e build 23-Apr-2019 17:36:11 Successfully tagged clowder/extractors-simple-extractor:onbuild build 23-Apr-2019 17:36:11 Sending build context to Docker daemon 13.31kB build 23-Apr-2019 17:36:11 build 23-Apr-2019 17:36:11 Step 1/10 : FROM clowder/pyclowder:latest build 23-Apr-2019 17:36:11 ---> 81a1253337e6 build 23-Apr-2019 17:36:11 Step 2/10 : ENV R_SCRIPT="" R_FUNCTION="" build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> cb8ec6373187 build 23-Apr-2019 17:36:11 Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> 7e82008224ac build 23-Apr-2019 17:36:11 Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/ build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> 87e1c868c36a build 23-Apr-2019 17:36:11 Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> 472ece8e94bd build 23-Apr-2019 17:36:11 Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> e7b0e1731d53 build 23-Apr-2019 17:36:11 Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> cb3dd8322b4e build 23-Apr-2019 17:36:11 Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> ce470c75b596 build 23-Apr-2019 17:36:11 Step 9/10 : ONBUILD ADD . /home/clowder/ build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> f92109216ab0 build 23-Apr-2019 17:36:11 Step 10/10 : CMD python r_extractor.py build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> c29b13cc9f82 build 23-Apr-2019 17:36:11 Successfully built c29b13cc9f82 build 23-Apr-2019 17:36:11 Successfully tagged clowder/extractors-simple-r-extractor:onbuild build 23-Apr-2019 17:36:11 Sending build context to Docker daemon 9.216kB build 23-Apr-2019 17:36:11 build 23-Apr-2019 17:36:11 Step 1/2 : FROM clowder/pyclowder:onbuild build 23-Apr-2019 17:36:11 # Executing 5 build triggers build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> 0cf18c9707ff build 23-Apr-2019 17:36:11 Step 2/2 : ENV MAIN_SCRIPT="wordcount.py" build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> 63b547681ccc build 23-Apr-2019 17:36:11 Successfully built 63b547681ccc build 23-Apr-2019 17:36:11 Successfully tagged clowder/extractors-wordcount:latest build 23-Apr-2019 17:36:11 Sending build context to Docker daemon 5.12kB build 23-Apr-2019 17:36:11 build 23-Apr-2019 17:36:11 Step 1/3 : FROM clowder/extractors-simple-extractor:onbuild build 23-Apr-2019 17:36:11 # Executing 5 build triggers build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> 440fa0a741a1 build 23-Apr-2019 17:36:11 Step 2/3 : ENV EXTRACTION_FUNC="wordcount" build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> 93368f19c51e build 23-Apr-2019 17:36:11 Step 3/3 : ENV EXTRACTION_MODULE="wordcount" build 23-Apr-2019 17:36:11 ---> Using cache build 23-Apr-2019 17:36:11 ---> 8bf9709187d8 build 23-Apr-2019 17:36:11 Successfully built 8bf9709187d8 build 23-Apr-2019 17:36:11 Successfully tagged clowder/extractors-wordcount-simple-extractor:latest build 23-Apr-2019 17:36:11 Sending build context to Docker daemon 5.12kB build 23-Apr-2019 17:36:11 build 23-Apr-2019 17:36:12 Step 1/2 : FROM clowder/extractors-simple-r-extractor:onbuild build 23-Apr-2019 17:36:12 # Executing 5 build triggers build 23-Apr-2019 17:36:12 ---> Using cache build 23-Apr-2019 17:36:12 ---> Using cache build 23-Apr-2019 17:36:12 ---> Using cache build 23-Apr-2019 17:36:12 ---> Using cache build 23-Apr-2019 17:36:12 ---> Using cache build 23-Apr-2019 17:36:12 ---> 5309caef5614 build 23-Apr-2019 17:36:12 Step 2/2 : ENV R_SCRIPT="wordcount.R" R_FUNCTION="process_file" build 23-Apr-2019 17:36:12 ---> Using cache build 23-Apr-2019 17:36:12 ---> 5b27355140f7 build 23-Apr-2019 17:36:12 Successfully built 5b27355140f7 build 23-Apr-2019 17:36:12 Successfully tagged clowder/extractors-wordcount-simple-r-extractor:latest simple 23-Apr-2019 17:36:12 Finished task 'docker push' with result: Success simple 23-Apr-2019 17:36:12 Starting task 'test results' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit' simple 23-Apr-2019 17:36:12 Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC296-JOB1... simple 23-Apr-2019 17:36:12 Finished task 'test results' with result: Success simple 23-Apr-2019 17:36:12 Running post build plugin 'Docker Container Cleanup' simple 23-Apr-2019 17:36:12 Running post build plugin 'NCover Results Collector' simple 23-Apr-2019 17:36:12 Running post build plugin 'Clover Results Collector' simple 23-Apr-2019 17:36:12 Running post build plugin 'npm Cache Cleanup' simple 23-Apr-2019 17:36:12 Running post build plugin 'Artifact Copier' simple 23-Apr-2019 17:36:12 Finalising the build... simple 23-Apr-2019 17:36:12 Stopping timer. simple 23-Apr-2019 17:36:12 Build CATS-PYC296-JOB1-1 completed. simple 23-Apr-2019 17:36:12 Running on server: post build plugin 'NCover Results Collector' simple 23-Apr-2019 17:36:12 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 23-Apr-2019 17:36:12 Running on server: post build plugin 'Clover Delta Calculator' simple 23-Apr-2019 17:36:12 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 23-Apr-2019 17:36:12 All post build plugins have finished simple 23-Apr-2019 17:36:12 Generating build results summary... simple 23-Apr-2019 17:36:12 Saving build results to disk... simple 23-Apr-2019 17:36:12 Logging substituted variables... simple 23-Apr-2019 17:36:12 Indexing build results... simple 23-Apr-2019 17:36:12 Finished building CATS-PYC296-JOB1-1.