simple 29-Sep-2019 15:29:25 Build Clowder - pyclowder - bugfix-GLGVO-343-parser-vm-spawning-many-jobs-update - Default Job #1 (CATS-PYC35-JOB1-1) started building on agent buildserver-2.os.ncsa.edu simple 29-Sep-2019 15:29:25 Remote agent on host buildserver-2.os.ncsa.edu simple 29-Sep-2019 15:29:25 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC35-JOB1 simple 29-Sep-2019 15:29:25 Executing build Clowder - pyclowder - bugfix-GLGVO-343-parser-vm-spawning-many-jobs-update - Default Job #1 (CATS-PYC35-JOB1-1) simple 29-Sep-2019 15:29:25 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 29-Sep-2019 15:29:25 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC35-JOB1 simple 29-Sep-2019 15:29:25 Updating source code to revision: bd8d7ccf7c57dcbc5c1c5d75e2a089f72fcc4cb5 simple 29-Sep-2019 15:29:26 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC35-JOB1/.git'. simple 29-Sep-2019 15:29:26 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC35-JOB1/.git/ simple 29-Sep-2019 15:29:26 Fetching 'refs/heads/bugfix/GLGVO-343-parser-vm-spawning-many-jobs-update' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git'. Will try to do a shallow fetch. simple 29-Sep-2019 15:29:26 Warning: Permanently added '[127.0.0.1]:39245' (RSA) to the list of known hosts. simple 29-Sep-2019 15:29:26 From ssh://127.0.0.1:39245/cats/pyclowder simple 29-Sep-2019 15:29:26 * [new branch] bugfix/GLGVO-343-parser-vm-spawning-many-jobs-update -> bugfix/GLGVO-343-parser-vm-spawning-many-jobs-update simple 29-Sep-2019 15:29:26 Checking out revision bd8d7ccf7c57dcbc5c1c5d75e2a089f72fcc4cb5. simple 29-Sep-2019 15:29:26 Switched to branch 'bugfix/GLGVO-343-parser-vm-spawning-many-jobs-update' simple 29-Sep-2019 15:29:26 Updated source code to revision: bd8d7ccf7c57dcbc5c1c5d75e2a089f72fcc4cb5 simple 29-Sep-2019 15:29:26 Finished task 'Checkout Default Repository' with result: Success simple 29-Sep-2019 15:29:26 Running pre-build action: VCS Version Collector simple 29-Sep-2019 15:29:26 Starting task 'docker build and push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 29-Sep-2019 15:29:26 Beginning to execute external process for build 'Clowder - pyclowder - bugfix-GLGVO-343-parser-vm-spawning-many-jobs-update - Default Job #1 (CATS-PYC35-JOB1-1)'\n ... running command line: \n/bin/sh docker.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC35-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=bugfix/GLGVO-343-parser-vm-spawning-many-jobs-update\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_planRepository_1_branchDisplayName=bugfix/GLGVO-343-parser-vm-spawning-many-jobs-update\nbamboo_repository_revision_number=bd8d7ccf7c57dcbc5c1c5d75e2a089f72fcc4cb5\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC35-JOB1-1\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC35-JOB1\nbamboo_planRepository_1_name=pyclowder\nbamboo_buildKey=CATS-PYC35-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=pyclowder\nbamboo_planRepository_name=pyclowder\nbamboo_repository_177831951_git_username=\nbamboo_buildNumber=1\nbamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC35-JOB1-1\nbamboo_repository_177831951_git_branch=bugfix/GLGVO-343-parser-vm-spawning-many-jobs-update\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git\nbamboo_agentId=140673028\nbamboo_planName=Clowder - pyclowder - bugfix-GLGVO-343-parser-vm-spawning-many-jobs-update\nbamboo_shortPlanKey=PYC35\nbamboo_repository_177831951_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_shortJobKey=JOB1\nbamboo_repository_177831951_previous_revision_number=bd8d7ccf7c57dcbc5c1c5d75e2a089f72fcc4cb5\nbamboo_planRepository_revision=bd8d7ccf7c57dcbc5c1c5d75e2a089f72fcc4cb5\nbamboo_repository_previous_revision_number=bd8d7ccf7c57dcbc5c1c5d75e2a089f72fcc4cb5\nbamboo_buildTimeStamp=2019-09-28T10:50:38.707-05:00\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_planRepository_previousRevision=bd8d7ccf7c57dcbc5c1c5d75e2a089f72fcc4cb5\nbamboo_repository_git_branch=bugfix/GLGVO-343-parser-vm-spawning-many-jobs-update\nbamboo_buildResultKey=CATS-PYC35-JOB1-1\nbamboo_repository_branch_name=bugfix/GLGVO-343-parser-vm-spawning-many-jobs-update\nbamboo_buildPlanName=Clowder - pyclowder - bugfix-GLGVO-343-parser-vm-spawning-many-jobs-update - Default Job\nbamboo_repository_177831951_branch_name=bugfix/GLGVO-343-parser-vm-spawning-many-jobs-update\nbamboo_planRepository_1_revision=bd8d7ccf7c57dcbc5c1c5d75e2a089f72fcc4cb5\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=pyclowder\nbamboo_buildFailed=false\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_branch=bugfix/GLGVO-343-parser-vm-spawning-many-jobs-update\nbamboo_repository_177831951_name=pyclowder\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=bd8d7ccf7c57dcbc5c1c5d75e2a089f72fcc4cb5\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_planRepository_branchDisplayName=bugfix/GLGVO-343-parser-vm-spawning-many-jobs-update\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=bugfix/GLGVO-343-parser-vm-spawning-many-jobs-update\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-177700879\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git\nbamboo_repository_177831951_revision_number=bd8d7ccf7c57dcbc5c1c5d75e2a089f72fcc4cb5\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC35-JOB1\nbamboo_planKey=CATS-PYC35\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_1_branchName=bugfix/GLGVO-343-parser-vm-spawning-many-jobs-update\n build 29-Sep-2019 15:29:27 Sending build context to Docker daemon 202.8kB build 29-Sep-2019 15:29:27 build 29-Sep-2019 15:29:27 Step 1/6 : FROM ubuntu:16.04 build 29-Sep-2019 15:29:27 ---> 657d80a6401d build 29-Sep-2019 15:29:27 Step 2/6 : MAINTAINER Rob Kooper build 29-Sep-2019 15:29:27 ---> Using cache build 29-Sep-2019 15:29:27 ---> 4b0d68c60218 build 29-Sep-2019 15:29:27 Step 3/6 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends netcat python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* && adduser --system clowder build 29-Sep-2019 15:29:27 ---> Using cache build 29-Sep-2019 15:29:27 ---> 27c0772cc8d0 build 29-Sep-2019 15:29:27 Step 4/6 : COPY pyclowder /tmp/pyclowder/pyclowder build 29-Sep-2019 15:29:27 ---> 252e68b5f8e4 build 29-Sep-2019 15:29:27 Step 5/6 : COPY setup.py requirements.txt /tmp/pyclowder/ build 29-Sep-2019 15:29:27 ---> 1a577789a6a9 build 29-Sep-2019 15:29:27 Step 6/6 : RUN pip install --upgrade -r /tmp/pyclowder/requirements.txt && pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder build 29-Sep-2019 15:29:28 ---> Running in c03095a9ca53 build 29-Sep-2019 15:29:29 Collecting enum34==1.1.6 (from -r /tmp/pyclowder/requirements.txt (line 1)) build 29-Sep-2019 15:29:29 Downloading https://files.pythonhosted.org/packages/c5/db/e56e6b4bbac7c4a06de1c50de6fe1ef3810018ae11732a50f15f62c7d050/enum34-1.1.6-py2-none-any.whl build 29-Sep-2019 15:29:29 Collecting et-xmlfile==1.0.1 (from -r /tmp/pyclowder/requirements.txt (line 2)) build 29-Sep-2019 15:29:29 Downloading https://files.pythonhosted.org/packages/22/28/a99c42aea746e18382ad9fb36f64c1c1f04216f41797f2f0fa567da11388/et_xmlfile-1.0.1.tar.gz build 29-Sep-2019 15:29:29 Collecting jdcal==1.3 (from -r /tmp/pyclowder/requirements.txt (line 3)) build 29-Sep-2019 15:29:30 Downloading https://files.pythonhosted.org/packages/9b/fa/40beb2aa43a13f740dd5be367a10a03270043787833409c61b79e69f1dfd/jdcal-1.3.tar.gz build 29-Sep-2019 15:29:30 Collecting openpyxl==2.4.1 (from -r /tmp/pyclowder/requirements.txt (line 4)) build 29-Sep-2019 15:29:30 Downloading https://files.pythonhosted.org/packages/dc/f2/c57f9f00f8ae5e1a73cb096dbf600433724f037ffcbd51c456f89da5efd9/openpyxl-2.4.1.tar.gz (154kB) build 29-Sep-2019 15:29:30 Collecting pika==0.10.0 (from -r /tmp/pyclowder/requirements.txt (line 5)) build 29-Sep-2019 15:29:30 Downloading https://files.pythonhosted.org/packages/26/12/400cf0aca6b1ecf1f00dcd89b246e7a4c8558677304ba067167b8167e714/pika-0.10.0-py2.py3-none-any.whl (92kB) build 29-Sep-2019 15:29:30 Collecting python-dateutil==2.6.0 (from -r /tmp/pyclowder/requirements.txt (line 6)) build 29-Sep-2019 15:29:30 Downloading https://files.pythonhosted.org/packages/40/8b/275015d7a9ec293cf1bbf55433258fbc9d0711890a7f6dc538bac7b86bce/python_dateutil-2.6.0-py2.py3-none-any.whl (194kB) build 29-Sep-2019 15:29:30 Collecting pytz==2016.10 (from -r /tmp/pyclowder/requirements.txt (line 7)) build 29-Sep-2019 15:29:30 Downloading https://files.pythonhosted.org/packages/f5/fa/4a9aefc206aa49a4b5e0a72f013df1f471b4714cdbe6d78f0134feeeecdb/pytz-2016.10-py2.py3-none-any.whl (483kB) build 29-Sep-2019 15:29:31 Collecting PyYAML==3.11 (from -r /tmp/pyclowder/requirements.txt (line 8)) build 29-Sep-2019 15:29:31 Downloading https://files.pythonhosted.org/packages/75/5e/b84feba55e20f8da46ead76f14a3943c8cb722d40360702b2365b91dec00/PyYAML-3.11.tar.gz (248kB) build 29-Sep-2019 15:29:31 Collecting requests==2.10.0 (from -r /tmp/pyclowder/requirements.txt (line 9)) build 29-Sep-2019 15:29:31 Downloading https://files.pythonhosted.org/packages/99/b4/63d99ba8e189c47d906b43bae18af4396e336f2b1bfec86af31efe2d2cb8/requests-2.10.0-py2.py3-none-any.whl (506kB) build 29-Sep-2019 15:29:31 Collecting six==1.10.0 (from -r /tmp/pyclowder/requirements.txt (line 10)) build 29-Sep-2019 15:29:31 Downloading https://files.pythonhosted.org/packages/c8/0a/b6723e1bc4c516cb687841499455a8505b44607ab535be01091c0f24f079/six-1.10.0-py2.py3-none-any.whl build 29-Sep-2019 15:29:31 Collecting wheel==0.24.0 (from -r /tmp/pyclowder/requirements.txt (line 11)) build 29-Sep-2019 15:29:31 Downloading https://files.pythonhosted.org/packages/e8/14/eaaac12b0432c984a27ad0050a5a0bedc6135df35a0f5f1f35228faf12d4/wheel-0.24.0-py2.py3-none-any.whl (63kB) build 29-Sep-2019 15:29:31 Collecting pytest==3.0.3 (from -r /tmp/pyclowder/requirements.txt (line 12)) build 29-Sep-2019 15:29:31 Downloading https://files.pythonhosted.org/packages/a4/e9/bf75a9a91c4a545bad262937d1defa90d95ac912118a706406e21aef889a/pytest-3.0.3-py2.py3-none-any.whl (169kB) build 29-Sep-2019 15:29:31 Collecting pytest-pep8==1.0.6 (from -r /tmp/pyclowder/requirements.txt (line 13)) build 29-Sep-2019 15:29:31 Downloading https://files.pythonhosted.org/packages/1f/1c/c834344ef39381558b047bea1e3005197fa8457c199d58219996ca07defb/pytest-pep8-1.0.6.tar.gz build 29-Sep-2019 15:29:32 Collecting pytest-capturelog==0.7 (from -r /tmp/pyclowder/requirements.txt (line 14)) build 29-Sep-2019 15:29:32 Downloading https://files.pythonhosted.org/packages/35/e9/6051b5bb65ad5049d5eb60127d34c63ba724e17acf8b1f2f2e0755131b6c/pytest-capturelog-0.7.tar.gz build 29-Sep-2019 15:29:32 Collecting urllib3==1.14 (from -r /tmp/pyclowder/requirements.txt (line 15)) build 29-Sep-2019 15:29:32 Downloading https://files.pythonhosted.org/packages/73/55/63deba73d82dfa39974ca3903110c3e3557ff8758a3a79482810915b385d/urllib3-1.14-py2.py3-none-any.whl (89kB) build 29-Sep-2019 15:29:32 Collecting py>=1.4.29 (from pytest==3.0.3->-r /tmp/pyclowder/requirements.txt (line 12)) build 29-Sep-2019 15:29:32 Downloading https://files.pythonhosted.org/packages/76/bc/394ad449851729244a97857ee14d7cba61ddb268dce3db538ba2f2ba1f0f/py-1.8.0-py2.py3-none-any.whl (83kB) build 29-Sep-2019 15:29:32 Collecting pytest-cache (from pytest-pep8==1.0.6->-r /tmp/pyclowder/requirements.txt (line 13)) build 29-Sep-2019 15:29:32 Downloading https://files.pythonhosted.org/packages/d1/15/082fd0428aab33d2bafa014f3beb241830427ba803a8912a5aaeaf3a5663/pytest-cache-1.0.tar.gz build 29-Sep-2019 15:29:32 Collecting pep8>=1.3 (from pytest-pep8==1.0.6->-r /tmp/pyclowder/requirements.txt (line 13)) build 29-Sep-2019 15:29:32 Downloading https://files.pythonhosted.org/packages/42/3f/669429ce58de2c22d8d2c542752e137ec4b9885fff398d3eceb1a7f5acb4/pep8-1.7.1-py2.py3-none-any.whl (41kB) build 29-Sep-2019 15:29:32 Collecting execnet>=1.1.dev1 (from pytest-cache->pytest-pep8==1.0.6->-r /tmp/pyclowder/requirements.txt (line 13)) build 29-Sep-2019 15:29:32 Downloading https://files.pythonhosted.org/packages/d3/2e/c63af07fa471e0a02d05793c7a56a9f7d274a8489442a5dc4fb3b2b3c705/execnet-1.7.1-py2.py3-none-any.whl build 29-Sep-2019 15:29:32 Collecting apipkg>=1.4 (from execnet>=1.1.dev1->pytest-cache->pytest-pep8==1.0.6->-r /tmp/pyclowder/requirements.txt (line 13)) build 29-Sep-2019 15:29:32 Downloading https://files.pythonhosted.org/packages/67/08/4815a09603fc800209431bec5b8bd2acf2f95abdfb558a44a42507fb94da/apipkg-1.5-py2.py3-none-any.whl build 29-Sep-2019 15:29:32 Building wheels for collected packages: et-xmlfile, jdcal, openpyxl, PyYAML, pytest-pep8, pytest-capturelog, pytest-cache build 29-Sep-2019 15:29:32 Running setup.py bdist_wheel for et-xmlfile: started build 29-Sep-2019 15:29:33 Running setup.py bdist_wheel for et-xmlfile: finished with status 'error' build 29-Sep-2019 15:29:33 Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-T_qxJb/et-xmlfile/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpkYET8Upip-wheel- --python-tag cp27: build 29-Sep-2019 15:29:33 usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] build 29-Sep-2019 15:29:33 or: -c --help [cmd1 cmd2 ...] build 29-Sep-2019 15:29:33 or: -c --help-commands build 29-Sep-2019 15:29:33 or: -c cmd --help build 29-Sep-2019 15:29:33 build 29-Sep-2019 15:29:33 error: invalid command 'bdist_wheel' build 29-Sep-2019 15:29:33 build 29-Sep-2019 15:29:33 ---------------------------------------- build 29-Sep-2019 15:29:33  Failed building wheel for et-xmlfile build 29-Sep-2019 15:29:33  Running setup.py clean for et-xmlfile build 29-Sep-2019 15:29:33 Running setup.py bdist_wheel for jdcal: started build 29-Sep-2019 15:29:33 Running setup.py bdist_wheel for jdcal: finished with status 'error' build 29-Sep-2019 15:29:33 Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-T_qxJb/jdcal/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpX6nIyCpip-wheel- --python-tag cp27: build 29-Sep-2019 15:29:33 usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] build 29-Sep-2019 15:29:33 or: -c --help [cmd1 cmd2 ...] build 29-Sep-2019 15:29:33 or: -c --help-commands build 29-Sep-2019 15:29:33 or: -c cmd --help build 29-Sep-2019 15:29:33 build 29-Sep-2019 15:29:33 error: invalid command 'bdist_wheel' build 29-Sep-2019 15:29:33 build 29-Sep-2019 15:29:33 ---------------------------------------- build 29-Sep-2019 15:29:33  Failed building wheel for jdcal build 29-Sep-2019 15:29:33  Running setup.py clean for jdcal build 29-Sep-2019 15:29:33 Running setup.py bdist_wheel for openpyxl: started build 29-Sep-2019 15:29:33 Running setup.py bdist_wheel for openpyxl: finished with status 'error' build 29-Sep-2019 15:29:33 Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-T_qxJb/openpyxl/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpZPN8H6pip-wheel- --python-tag cp27: build 29-Sep-2019 15:29:33 usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] build 29-Sep-2019 15:29:33 or: -c --help [cmd1 cmd2 ...] build 29-Sep-2019 15:29:33 or: -c --help-commands build 29-Sep-2019 15:29:33 or: -c cmd --help build 29-Sep-2019 15:29:33 build 29-Sep-2019 15:29:33 error: invalid command 'bdist_wheel' build 29-Sep-2019 15:29:33 build 29-Sep-2019 15:29:33 ---------------------------------------- build 29-Sep-2019 15:29:33  Failed building wheel for openpyxl build 29-Sep-2019 15:29:33  Running setup.py clean for openpyxl build 29-Sep-2019 15:29:33 Running setup.py bdist_wheel for PyYAML: started build 29-Sep-2019 15:29:34 Running setup.py bdist_wheel for PyYAML: finished with status 'error' build 29-Sep-2019 15:29:34 Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-T_qxJb/PyYAML/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpSY22Ocpip-wheel- --python-tag cp27: build 29-Sep-2019 15:29:34 usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] build 29-Sep-2019 15:29:34 or: -c --help [cmd1 cmd2 ...] build 29-Sep-2019 15:29:34 or: -c --help-commands build 29-Sep-2019 15:29:34 or: -c cmd --help build 29-Sep-2019 15:29:34 build 29-Sep-2019 15:29:34 error: invalid command 'bdist_wheel' build 29-Sep-2019 15:29:34 build 29-Sep-2019 15:29:34 ---------------------------------------- build 29-Sep-2019 15:29:34  Failed building wheel for PyYAML build 29-Sep-2019 15:29:34  Running setup.py clean for PyYAML build 29-Sep-2019 15:29:34 Running setup.py bdist_wheel for pytest-pep8: started build 29-Sep-2019 15:29:34 Running setup.py bdist_wheel for pytest-pep8: finished with status 'error' build 29-Sep-2019 15:29:34 Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-T_qxJb/pytest-pep8/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpZ2ioX_pip-wheel- --python-tag cp27: build 29-Sep-2019 15:29:34 usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] build 29-Sep-2019 15:29:34 or: -c --help [cmd1 cmd2 ...] build 29-Sep-2019 15:29:34 or: -c --help-commands build 29-Sep-2019 15:29:34 or: -c cmd --help build 29-Sep-2019 15:29:34 build 29-Sep-2019 15:29:34 error: invalid command 'bdist_wheel' build 29-Sep-2019 15:29:34 build 29-Sep-2019 15:29:34 ---------------------------------------- build 29-Sep-2019 15:29:34  Failed building wheel for pytest-pep8 build 29-Sep-2019 15:29:34  Running setup.py clean for pytest-pep8 build 29-Sep-2019 15:29:34 Running setup.py bdist_wheel for pytest-capturelog: started build 29-Sep-2019 15:29:34 Running setup.py bdist_wheel for pytest-capturelog: finished with status 'error' build 29-Sep-2019 15:29:34 Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-T_qxJb/pytest-capturelog/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpi3wD0Apip-wheel- --python-tag cp27: build 29-Sep-2019 15:29:34 usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] build 29-Sep-2019 15:29:34 or: -c --help [cmd1 cmd2 ...] build 29-Sep-2019 15:29:34 or: -c --help-commands build 29-Sep-2019 15:29:34 or: -c cmd --help build 29-Sep-2019 15:29:34 build 29-Sep-2019 15:29:34 error: invalid command 'bdist_wheel' build 29-Sep-2019 15:29:34 build 29-Sep-2019 15:29:34 ---------------------------------------- build 29-Sep-2019 15:29:34  Failed building wheel for pytest-capturelog build 29-Sep-2019 15:29:34  Running setup.py clean for pytest-capturelog build 29-Sep-2019 15:29:34 Running setup.py bdist_wheel for pytest-cache: started build 29-Sep-2019 15:29:34 Running setup.py bdist_wheel for pytest-cache: finished with status 'error' build 29-Sep-2019 15:29:34 Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-T_qxJb/pytest-cache/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpz3gqETpip-wheel- --python-tag cp27: build 29-Sep-2019 15:29:34 usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] build 29-Sep-2019 15:29:34 or: -c --help [cmd1 cmd2 ...] build 29-Sep-2019 15:29:34 or: -c --help-commands build 29-Sep-2019 15:29:34 or: -c cmd --help build 29-Sep-2019 15:29:34 build 29-Sep-2019 15:29:34 error: invalid command 'bdist_wheel' build 29-Sep-2019 15:29:34 build 29-Sep-2019 15:29:34 ---------------------------------------- build 29-Sep-2019 15:29:34  Failed building wheel for pytest-cache build 29-Sep-2019 15:29:34  Running setup.py clean for pytest-cache build 29-Sep-2019 15:29:35 Failed to build et-xmlfile jdcal openpyxl PyYAML pytest-pep8 pytest-capturelog pytest-cache build 29-Sep-2019 15:29:35 Installing collected packages: enum34, et-xmlfile, jdcal, openpyxl, pika, six, python-dateutil, pytz, PyYAML, requests, wheel, py, pytest, apipkg, execnet, pytest-cache, pep8, pytest-pep8, pytest-capturelog, urllib3 build 29-Sep-2019 15:29:35 Running setup.py install for et-xmlfile: started build 29-Sep-2019 15:29:35 Running setup.py install for et-xmlfile: finished with status 'done' build 29-Sep-2019 15:29:35 Running setup.py install for jdcal: started build 29-Sep-2019 15:29:35 Running setup.py install for jdcal: finished with status 'done' build 29-Sep-2019 15:29:35 Running setup.py install for openpyxl: started build 29-Sep-2019 15:29:35 Running setup.py install for openpyxl: finished with status 'done' build 29-Sep-2019 15:29:36 Running setup.py install for PyYAML: started build 29-Sep-2019 15:29:36 Running setup.py install for PyYAML: finished with status 'done' build 29-Sep-2019 15:29:36 Running setup.py install for pytest-cache: started build 29-Sep-2019 15:29:37 Running setup.py install for pytest-cache: finished with status 'done' build 29-Sep-2019 15:29:37 Running setup.py install for pytest-pep8: started build 29-Sep-2019 15:29:37 Running setup.py install for pytest-pep8: finished with status 'done' build 29-Sep-2019 15:29:37 Running setup.py install for pytest-capturelog: started build 29-Sep-2019 15:29:37 Running setup.py install for pytest-capturelog: finished with status 'done' build 29-Sep-2019 15:29:37 Successfully installed PyYAML-3.11 apipkg-1.5 enum34-1.1.6 et-xmlfile-1.0.1 execnet-1.7.1 jdcal-1.3 openpyxl-2.4.1 pep8-1.7.1 pika-0.10.0 py-1.8.0 pytest-3.0.3 pytest-cache-1.0 pytest-capturelog-0.7 pytest-pep8-1.0.6 python-dateutil-2.6.0 pytz-2016.10 requests-2.10.0 six-1.10.0 urllib3-1.14 wheel-0.24.0 build 29-Sep-2019 15:29:37 You are using pip version 8.1.1, however version 19.2.3 is available. build 29-Sep-2019 15:29:37 You should consider upgrading via the 'pip install --upgrade pip' command. build 29-Sep-2019 15:29:38 Processing /tmp/pyclowder build 29-Sep-2019 15:29:38 Installing collected packages: pyclowder build 29-Sep-2019 15:29:38 Running setup.py install for pyclowder: started build 29-Sep-2019 15:29:38 Running setup.py install for pyclowder: finished with status 'done' build 29-Sep-2019 15:29:38 Successfully installed pyclowder-2.0.0 build 29-Sep-2019 15:29:39 You are using pip version 8.1.1, however version 19.2.3 is available. build 29-Sep-2019 15:29:39 You should consider upgrading via the 'pip install --upgrade pip' command. build 29-Sep-2019 15:29:40 Removing intermediate container c03095a9ca53 build 29-Sep-2019 15:29:40 ---> f08d220189a2 build 29-Sep-2019 15:29:40 Successfully built f08d220189a2 build 29-Sep-2019 15:29:40 Successfully tagged 13139:latest build 29-Sep-2019 15:29:40 Untagged: 13139:latest build 29-Sep-2019 15:29:40 Sending build context to Docker daemon 11.78kB build 29-Sep-2019 15:29:40 build 29-Sep-2019 15:29:40 Step 1/7 : FROM clowder/pyclowder:2 build 29-Sep-2019 15:29:40 ---> f08d220189a2 build 29-Sep-2019 15:29:40 Step 2/7 : MAINTAINER Rob Kooper build 29-Sep-2019 15:29:41 ---> Running in 1bbdc701119c build 29-Sep-2019 15:29:41 Removing intermediate container 1bbdc701119c build 29-Sep-2019 15:29:41 ---> 0bb43df2c9f2 build 29-Sep-2019 15:29:41 Step 3/7 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="ncsa.wordcount" REGISTRATION_ENDPOINTS="https://clowder.ncsa.illinois.edu/extractors" MAIN_SCRIPT="wordcount.py" build 29-Sep-2019 15:29:41 ---> Running in 79229a618457 build 29-Sep-2019 15:29:42 Removing intermediate container 79229a618457 build 29-Sep-2019 15:29:42 ---> e5efc495c561 build 29-Sep-2019 15:29:42 Step 4/7 : USER clowder build 29-Sep-2019 15:29:42 ---> Running in e02d496390ee build 29-Sep-2019 15:29:43 Removing intermediate container e02d496390ee build 29-Sep-2019 15:29:43 ---> 5d11fb60efaf build 29-Sep-2019 15:29:43 Step 5/7 : COPY entrypoint.sh *.py extractor_info.json /home/clowder/ build 29-Sep-2019 15:29:43 ---> cd6acc9f00a1 build 29-Sep-2019 15:29:43 Step 6/7 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] build 29-Sep-2019 15:29:43 ---> Running in 72796fa6ebdd build 29-Sep-2019 15:29:44 Removing intermediate container 72796fa6ebdd build 29-Sep-2019 15:29:44 ---> ab110c6f9f97 build 29-Sep-2019 15:29:44 Step 7/7 : CMD ["extractor"] build 29-Sep-2019 15:29:44 ---> Running in f6834f76da34 build 29-Sep-2019 15:29:44 Removing intermediate container f6834f76da34 build 29-Sep-2019 15:29:44 ---> fb66a412cbb8 build 29-Sep-2019 15:29:44 Successfully built fb66a412cbb8 build 29-Sep-2019 15:29:44 Successfully tagged 13139:latest build 29-Sep-2019 15:29:44 Untagged: 13139:latest build 29-Sep-2019 15:29:44 Untagged: clowder/pyclowder:latest build 29-Sep-2019 15:29:45 Untagged: clowder/extractors-wordcount:latest simple 29-Sep-2019 15:29:45 Finished task 'docker build and push' with result: Success simple 29-Sep-2019 15:29:45 Running post build plugin 'Docker Container Cleanup' simple 29-Sep-2019 15:29:45 Running post build plugin 'NCover Results Collector' simple 29-Sep-2019 15:29:45 Running post build plugin 'Clover Results Collector' simple 29-Sep-2019 15:29:45 Running post build plugin 'npm Cache Cleanup' simple 29-Sep-2019 15:29:45 Running post build plugin 'Artifact Copier' simple 29-Sep-2019 15:29:45 Finalising the build... simple 29-Sep-2019 15:29:45 Stopping timer. simple 29-Sep-2019 15:29:45 Build CATS-PYC35-JOB1-1 completed. simple 29-Sep-2019 15:29:45 Running on server: post build plugin 'NCover Results Collector' simple 29-Sep-2019 15:29:45 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 29-Sep-2019 15:29:45 Running on server: post build plugin 'Clover Delta Calculator' simple 29-Sep-2019 15:29:45 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 29-Sep-2019 15:29:45 All post build plugins have finished simple 29-Sep-2019 15:29:45 Generating build results summary... simple 29-Sep-2019 15:29:45 Saving build results to disk... simple 29-Sep-2019 15:29:45 Logging substituted variables... simple 29-Sep-2019 15:29:45 Indexing build results... simple 29-Sep-2019 15:29:45 Finished building CATS-PYC35-JOB1-1.