simple 22-Jan-2020 15:12:06 Build Clowder - pyclowder - separate-extractor-message-and-type - Default Job #3 (CATS-PYC56-JOB1-3) started building on agent buildserver-1.os.ncsa.edu simple 22-Jan-2020 15:12:06 Remote agent on host buildserver-1.os.ncsa.edu simple 22-Jan-2020 15:12:06 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC56-JOB1 simple 22-Jan-2020 15:12:06 Executing build Clowder - pyclowder - separate-extractor-message-and-type - Default Job #3 (CATS-PYC56-JOB1-3) simple 22-Jan-2020 15:12:06 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 22-Jan-2020 15:12:06 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC56-JOB1 simple 22-Jan-2020 15:12:06 Updating source code to revision: 4268d7460829d7c25ea71a53fd5742686f1005e8 simple 22-Jan-2020 15:12:06 Fetching 'refs/heads/separate-extractor-message-and-type' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git'. Will try to do a shallow fetch. simple 22-Jan-2020 15:12:06 Warning: Permanently added '[127.0.0.1]:43741' (RSA) to the list of known hosts. simple 22-Jan-2020 15:12:06 From ssh://127.0.0.1:43741/cats/pyclowder simple 22-Jan-2020 15:12:06 + 24fc65a...4268d74 separate-extractor-message-and-type -> separate-extractor-message-and-type (forced update) simple 22-Jan-2020 15:12:06 Checking out revision 4268d7460829d7c25ea71a53fd5742686f1005e8. simple 22-Jan-2020 15:12:06 Already on 'separate-extractor-message-and-type' simple 22-Jan-2020 15:12:06 Updated source code to revision: 4268d7460829d7c25ea71a53fd5742686f1005e8 simple 22-Jan-2020 15:12:06 Finished task 'Checkout Default Repository' with result: Success simple 22-Jan-2020 15:12:06 Running pre-build action: VCS Version Collector simple 22-Jan-2020 15:12:06 Starting task 'docker build and push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 22-Jan-2020 15:12:06 Beginning to execute external process for build 'Clowder - pyclowder - separate-extractor-message-and-type - Default Job #3 (CATS-PYC56-JOB1-3)'\n ... running command line: \n/bin/sh docker.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC56-JOB1\n ... using extra environment variables: 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- pyclowder - separate-extractor-message-and-type - Default 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build 22-Jan-2020 15:12:06 Sending build context to Docker daemon 260.1kB build 22-Jan-2020 15:12:06 build 22-Jan-2020 15:12:06 Step 1/10 : FROM ubuntu:16.04 build 22-Jan-2020 15:12:06 ---> 96da9143fb18 build 22-Jan-2020 15:12:06 Step 2/10 : ARG PYTHON_VERSION="2.7" build 22-Jan-2020 15:12:06 ---> Using cache build 22-Jan-2020 15:12:06 ---> ff39708511b1 build 22-Jan-2020 15:12:06 Step 3/10 : ENV PYTHON_VERSION=${PYTHON_VERSION} RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" build 22-Jan-2020 15:12:06 ---> Using cache build 22-Jan-2020 15:12:06 ---> 64f5e4a1161a build 22-Jan-2020 15:12:06 Step 4/10 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python${PYTHON_VERSION} curl && if [ ! -e /usr/bin/python ]; then ln -s /usr/bin/python${PYTHON_VERSION} /usr/bin/python; fi && curl -k https://bootstrap.pypa.io/get-pip.py -o /tmp/get-pip.py && python /tmp/get-pip.py && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* /tmp/get-pip.py build 22-Jan-2020 15:12:06 ---> Using cache build 22-Jan-2020 15:12:06 ---> d9a18191bba1 build 22-Jan-2020 15:12:06 Step 5/10 : COPY pyclowder /tmp/pyclowder/pyclowder build 22-Jan-2020 15:12:08 ---> 7e9e3101dd50 build 22-Jan-2020 15:12:08 Step 6/10 : COPY setup.py description.rst /tmp/pyclowder/ build 22-Jan-2020 15:12:09 ---> 98438e57d45b build 22-Jan-2020 15:12:09 Step 7/10 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder build 22-Jan-2020 15:12:09 ---> Running in 6e4f907ffc8d build 22-Jan-2020 15:12:10 DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support build 22-Jan-2020 15:12:10 Processing /tmp/pyclowder build 22-Jan-2020 15:12:11 Collecting enum34==1.1.6 build 22-Jan-2020 15:12:11 Downloading enum34-1.1.6-py2-none-any.whl (12 kB) build 22-Jan-2020 15:12:12 Collecting pika==1.0.0 build 22-Jan-2020 15:12:12 Downloading pika-1.0.0-py2.py3-none-any.whl (148 kB) build 22-Jan-2020 15:12:12 Collecting PyYAML==5.1 build 22-Jan-2020 15:12:12 Downloading PyYAML-5.1.tar.gz (274 kB) build 22-Jan-2020 15:12:13 Collecting requests==2.21.0 build 22-Jan-2020 15:12:13 Downloading requests-2.21.0-py2.py3-none-any.whl (57 kB) build 22-Jan-2020 15:12:13 Collecting requests-toolbelt==0.9.1 build 22-Jan-2020 15:12:13 Downloading requests_toolbelt-0.9.1-py2.py3-none-any.whl (54 kB) build 22-Jan-2020 15:12:13 Collecting certifi>=2017.4.17 build 22-Jan-2020 15:12:13 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) build 22-Jan-2020 15:12:14 Collecting urllib3<1.25,>=1.21.1 build 22-Jan-2020 15:12:14 Downloading urllib3-1.24.3-py2.py3-none-any.whl (118 kB) build 22-Jan-2020 15:12:14 Collecting chardet<3.1.0,>=3.0.2 build 22-Jan-2020 15:12:14 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) build 22-Jan-2020 15:12:14 Collecting idna<2.9,>=2.5 build 22-Jan-2020 15:12:14 Downloading idna-2.8-py2.py3-none-any.whl (58 kB) build 22-Jan-2020 15:12:14 Building wheels for collected packages: pyclowder, PyYAML build 22-Jan-2020 15:12:14 Building wheel for pyclowder (setup.py): started build 22-Jan-2020 15:12:14 Building wheel for pyclowder (setup.py): finished with status 'done' build 22-Jan-2020 15:12:14 Created wheel for pyclowder: filename=pyclowder-2.2.3-py2-none-any.whl size=31524 sha256=3805c0f09f97bef960eccdc43c28d296f5d283fc3fef3de6ac004d6b26779e95 build 22-Jan-2020 15:12:14 Stored in directory: /tmp/pip-ephem-wheel-cache-CB4Snv/wheels/ca/ce/c0/67204d60f211af388337f8e76df4c54d5ff199d66646616f34 build 22-Jan-2020 15:12:14 Building wheel for PyYAML (setup.py): started build 22-Jan-2020 15:12:15 Building wheel for PyYAML (setup.py): finished with status 'done' build 22-Jan-2020 15:12:15 Created wheel for PyYAML: filename=PyYAML-5.1-cp27-cp27mu-linux_x86_64.whl size=44881 sha256=8d938ad560b5c11ed81dcc6986543024e77dd3d10152c9b9f67f6d79f3e4242b build 22-Jan-2020 15:12:15 Stored in directory: /root/.cache/pip/wheels/a2/39/f3/2601aa6630b855ea35bc2a13ae08ddb71edab0b053d750ef8a build 22-Jan-2020 15:12:15 Successfully built pyclowder PyYAML build 22-Jan-2020 15:12:15 Installing collected packages: enum34, pika, PyYAML, certifi, urllib3, chardet, idna, requests, requests-toolbelt, pyclowder build 22-Jan-2020 15:12:15 Successfully installed PyYAML-5.1 certifi-2019.11.28 chardet-3.0.4 enum34-1.1.6 idna-2.8 pika-1.0.0 pyclowder-2.2.3 requests-2.21.0 requests-toolbelt-0.9.1 urllib3-1.24.3 build 22-Jan-2020 15:12:16 Removing intermediate container 6e4f907ffc8d build 22-Jan-2020 15:12:16 ---> b585f822acd1 build 22-Jan-2020 15:12:16 Step 8/10 : WORKDIR /home/clowder build 22-Jan-2020 15:12:16 ---> Running in 754f89b6c221 build 22-Jan-2020 15:12:17 Removing intermediate container 754f89b6c221 build 22-Jan-2020 15:12:17 ---> 7b20f88ebe19 build 22-Jan-2020 15:12:17 Step 9/10 : COPY notifications.json /home/clowder/ build 22-Jan-2020 15:12:17 ---> 6f2d095b674e build 22-Jan-2020 15:12:17 Step 10/10 : CMD python "./${MAIN_SCRIPT}" build 22-Jan-2020 15:12:17 ---> Running in 124612c9babe build 22-Jan-2020 15:12:18 Removing intermediate container 124612c9babe build 22-Jan-2020 15:12:18 ---> 823d22609cf2 build 22-Jan-2020 15:12:18 Successfully built 823d22609cf2 build 22-Jan-2020 15:12:18 Successfully tagged clowder/pyclowder:latest build 22-Jan-2020 15:12:18 Sending build context to Docker daemon 258kB build 22-Jan-2020 15:12:18 build 22-Jan-2020 15:12:18 Step 1/7 : ARG PYCLOWDER_PYTHON="" build 22-Jan-2020 15:12:18 Step 2/7 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest build 22-Jan-2020 15:12:18 ---> 823d22609cf2 build 22-Jan-2020 15:12:18 Step 3/7 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 22-Jan-2020 15:12:18 ---> Running in 3cf7ff4867cb build 22-Jan-2020 15:12:18 Removing intermediate container 3cf7ff4867cb build 22-Jan-2020 15:12:18 ---> b3b5b70c7353 build 22-Jan-2020 15:12:18 Step 4/7 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 22-Jan-2020 15:12:19 ---> Running in e48cba0a91cd build 22-Jan-2020 15:12:19 Removing intermediate container e48cba0a91cd build 22-Jan-2020 15:12:19 ---> d0464fd91c8b build 22-Jan-2020 15:12:19 Step 5/7 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 22-Jan-2020 15:12:20 ---> Running in 73304564de78 build 22-Jan-2020 15:12:20 Removing intermediate container 73304564de78 build 22-Jan-2020 15:12:20 ---> 8bc2f5cf6448 build 22-Jan-2020 15:12:20 Step 6/7 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 22-Jan-2020 15:12:20 ---> Running in c29824157222 build 22-Jan-2020 15:12:21 Removing intermediate container c29824157222 build 22-Jan-2020 15:12:21 ---> bb10d84568f1 build 22-Jan-2020 15:12:21 Step 7/7 : ONBUILD ADD . /home/clowder/ build 22-Jan-2020 15:12:21 ---> Running in 3d6047622b3f build 22-Jan-2020 15:12:21 Removing intermediate container 3d6047622b3f build 22-Jan-2020 15:12:21 ---> 38dd88548a39 build 22-Jan-2020 15:12:21 Successfully built 38dd88548a39 build 22-Jan-2020 15:12:21 Successfully tagged clowder/pyclowder:onbuild build 22-Jan-2020 15:12:21 Sending build context to Docker daemon 12.8kB build 22-Jan-2020 15:12:21 build 22-Jan-2020 15:12:21 Step 1/6 : ARG PYCLOWDER_PYTHON="" build 22-Jan-2020 15:12:21 Step 2/6 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:onbuild build 22-Jan-2020 15:12:21 # Executing 5 build triggers build 22-Jan-2020 15:12:22 ---> Running in 20be6d9967c3 build 22-Jan-2020 15:12:24 Removing intermediate container 20be6d9967c3 build 22-Jan-2020 15:12:24 ---> Running in fd7f3241cdc4 build 22-Jan-2020 15:12:27 Removing intermediate container fd7f3241cdc4 build 22-Jan-2020 15:12:27 ---> 9e5a39dde43a build 22-Jan-2020 15:12:27 Step 3/6 : ENV MAIN_SCRIPT="binary_extractor.py" RABBITMQ_QUEUE="" IMAGE_BINARY="" IMAGE_TYPE="" IMAGE_THUMBNAIL_COMMAND="" IMAGE_PREVIEW_COMMAND="" PREVIEW_BINARY="" PREVIEW_TYPE="" PREVIEW_COMMAND="" build 22-Jan-2020 15:12:27 ---> Running in bccf9bc4b552 build 22-Jan-2020 15:12:27 Removing intermediate container bccf9bc4b552 build 22-Jan-2020 15:12:27 ---> f227b697acd1 build 22-Jan-2020 15:12:27 Step 4/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 22-Jan-2020 15:12:28 ---> Running in ed6536ceabdc build 22-Jan-2020 15:12:28 Removing intermediate container ed6536ceabdc build 22-Jan-2020 15:12:28 ---> e607d2179050 build 22-Jan-2020 15:12:28 Step 5/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 22-Jan-2020 15:12:28 ---> Running in c4fe306f3385 build 22-Jan-2020 15:12:28 Removing intermediate container c4fe306f3385 build 22-Jan-2020 15:12:28 ---> c3e9741392c4 build 22-Jan-2020 15:12:28 Step 6/6 : ONBUILD COPY extractor_info.json /home/clowder/ build 22-Jan-2020 15:12:29 ---> Running in e88948550742 build 22-Jan-2020 15:12:29 Removing intermediate container e88948550742 build 22-Jan-2020 15:12:29 ---> 4d0ca34421c0 build 22-Jan-2020 15:12:29 Successfully built 4d0ca34421c0 build 22-Jan-2020 15:12:29 Successfully tagged clowder/extractors-binary-preview:onbuild build 22-Jan-2020 15:12:29 Sending build context to Docker daemon 6.656kB build 22-Jan-2020 15:12:29 build 22-Jan-2020 15:12:29 Step 1/11 : ARG PYCLOWDER_PYTHON="" build 22-Jan-2020 15:12:29 Step 2/11 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest build 22-Jan-2020 15:12:29 ---> 823d22609cf2 build 22-Jan-2020 15:12:29 Step 3/11 : ENV EXTRACTION_FUNC="" build 22-Jan-2020 15:12:29 ---> Running in ba65f25fdf06 build 22-Jan-2020 15:12:30 Removing intermediate container ba65f25fdf06 build 22-Jan-2020 15:12:30 ---> bb3bca1cb39e build 22-Jan-2020 15:12:30 Step 4/11 : ENV EXTRACTION_MODULE="" build 22-Jan-2020 15:12:30 ---> Running in c2f233c42b48 build 22-Jan-2020 15:12:30 Removing intermediate container c2f233c42b48 build 22-Jan-2020 15:12:30 ---> dfe7660cd792 build 22-Jan-2020 15:12:30 Step 5/11 : COPY simple_extractor.py . build 22-Jan-2020 15:12:30 ---> 52c4f8f086ee build 22-Jan-2020 15:12:30 Step 6/11 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 22-Jan-2020 15:12:31 ---> Running in c46e24aa5479 build 22-Jan-2020 15:12:31 Removing intermediate container c46e24aa5479 build 22-Jan-2020 15:12:31 ---> a15026108f49 build 22-Jan-2020 15:12:31 Step 7/11 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 22-Jan-2020 15:12:32 ---> Running in d7dfd63f859d build 22-Jan-2020 15:12:32 Removing intermediate container d7dfd63f859d build 22-Jan-2020 15:12:32 ---> 799871c1c1af build 22-Jan-2020 15:12:32 Step 8/11 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 22-Jan-2020 15:12:32 ---> Running in 4b926fd4515a build 22-Jan-2020 15:12:33 Removing intermediate container 4b926fd4515a build 22-Jan-2020 15:12:33 ---> c692cb00f00e build 22-Jan-2020 15:12:33 Step 9/11 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 22-Jan-2020 15:12:33 ---> Running in cac1594ae441 build 22-Jan-2020 15:12:33 Removing intermediate container cac1594ae441 build 22-Jan-2020 15:12:33 ---> eb5ed409b3fc build 22-Jan-2020 15:12:33 Step 10/11 : ONBUILD ADD . /home/clowder/ build 22-Jan-2020 15:12:33 ---> Running in 0b5b5e4a15ab build 22-Jan-2020 15:12:34 Removing intermediate container 0b5b5e4a15ab build 22-Jan-2020 15:12:34 ---> 8f80c2d3e409 build 22-Jan-2020 15:12:34 Step 11/11 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" build 22-Jan-2020 15:12:34 ---> Running in 308c71bb7e35 build 22-Jan-2020 15:12:34 Removing intermediate container 308c71bb7e35 build 22-Jan-2020 15:12:34 ---> fea1c4ddd048 build 22-Jan-2020 15:12:34 Successfully built fea1c4ddd048 build 22-Jan-2020 15:12:34 Successfully tagged clowder/extractors-simple-extractor:onbuild build 22-Jan-2020 15:12:34 Sending build context to Docker daemon 13.31kB build 22-Jan-2020 15:12:34 build 22-Jan-2020 15:12:34 Step 1/11 : ARG PYCLOWDER_PYTHON="" build 22-Jan-2020 15:12:34 Step 2/11 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest build 22-Jan-2020 15:12:34 ---> 823d22609cf2 build 22-Jan-2020 15:12:34 Step 3/11 : ENV R_SCRIPT="" R_FUNCTION="" build 22-Jan-2020 15:12:35 ---> Running in fb61ffc3ab96 build 22-Jan-2020 15:12:35 Removing intermediate container fb61ffc3ab96 build 22-Jan-2020 15:12:35 ---> f8ad4b7e71d7 build 22-Jan-2020 15:12:35 Step 4/11 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" build 22-Jan-2020 15:12:35 ---> Running in bd3eea1f7929 build 22-Jan-2020 15:12:36 Executing: /tmp/tmp.5D54CgOYcd/gpg.1.sh --keyserver build 22-Jan-2020 15:12:36 keyserver.ubuntu.com build 22-Jan-2020 15:12:36 --recv-keys build 22-Jan-2020 15:12:36 E298A3A825C0D65DFD57CBB651716619E084DAB9 build 22-Jan-2020 15:12:36 gpg: requesting key E084DAB9 from hkp server keyserver.ubuntu.com build 22-Jan-2020 15:12:36 gpg: key E084DAB9: public key "Michael Rutter " imported build 22-Jan-2020 15:12:36 gpg: Total number processed: 1 build 22-Jan-2020 15:12:36 gpg:  imported: 1 (RSA: 1) build 22-Jan-2020 15:12:41 Reading package lists... build 22-Jan-2020 15:12:41 Building dependency tree... build 22-Jan-2020 15:12:41 Reading state information... build 22-Jan-2020 15:12:41 The following additional packages will be installed: build 22-Jan-2020 15:12:41 autoconf automake autotools-dev binutils bsdmainutils build-essential bzip2 build 22-Jan-2020 15:12:41 ca-certificates cdbs cpp cpp-5 debhelper dh-strip-nondeterminism build 22-Jan-2020 15:12:41 dh-translations dpkg-dev file fontconfig fontconfig-config fonts-dejavu-core build 22-Jan-2020 15:12:41 g++ g++-5 gcc gcc-5 gettext gettext-base gfortran gfortran-5 groff-base build 22-Jan-2020 15:12:41 icu-devtools intltool intltool-debian libarchive-zip-perl libasan2 build 22-Jan-2020 15:12:41 libasprintf0v5 libatomic1 libblas-common libblas-dev libblas3 libbz2-dev build 22-Jan-2020 15:12:41 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcroco3 libcurl3 build 22-Jan-2020 15:12:41 libdatrie1 libdpkg-perl libencode-locale-perl libfile-listing-perl build 22-Jan-2020 15:12:41 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-5-dev build 22-Jan-2020 15:12:41 libgdbm3 libgfortran-5-dev libgfortran3 libglib2.0-0 libgomp1 libgraphite2-3 build 22-Jan-2020 15:12:41 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl build 22-Jan-2020 15:12:41 libhttp-cookies-perl libhttp-date-perl libhttp-message-perl build 22-Jan-2020 15:12:41 libhttp-negotiate-perl libice6 libicu-dev libicu55 libio-html-perl build 22-Jan-2020 15:12:41 libio-socket-ssl-perl libisl15 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 build 22-Jan-2020 15:12:41 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblsan0 build 22-Jan-2020 15:12:41 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic1 build 22-Jan-2020 15:12:41 libmpc3 libmpfr4 libmpx0 libncurses5-dev libnet-http-perl libnet-ssleay-perl build 22-Jan-2020 15:12:41 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils build 22-Jan-2020 15:12:41 libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.22 build 22-Jan-2020 15:12:41 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libpython-stdlib build 22-Jan-2020 15:12:41 libquadmath0 libreadline-dev libreadline6-dev libsigsegv2 libsm6 build 22-Jan-2020 15:12:41 libstdc++-5-dev libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl build 22-Jan-2020 15:12:41 libtinfo-dev libtk8.6 libtsan0 libubsan0 libunistring0 liburi-perl build 22-Jan-2020 15:12:41 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 build 22-Jan-2020 15:12:41 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 build 22-Jan-2020 15:12:41 libxml-parser-perl libxml2 libxmuu1 libxrender1 libxss1 libxt6 build 22-Jan-2020 15:12:41 linux-libc-dev m4 make man-db netbase openssl patch perl perl-modules-5.22 build 22-Jan-2020 15:12:41 pkg-config po-debconf python python-minimal python-pkg-resources build 22-Jan-2020 15:12:41 python-scour python-six tzdata ucf unzip x11-common xauth xdg-utils xz-utils build 22-Jan-2020 15:12:41 zip zlib1g zlib1g-dev build 22-Jan-2020 15:12:41 Suggested packages: build 22-Jan-2020 15:12:41 autoconf-archive gnu-standards autoconf-doc libtool binutils-doc wamerican build 22-Jan-2020 15:12:41 | wordlist whois vacation bzip2-doc devscripts cpp-doc gcc-5-locales dh-make build 22-Jan-2020 15:12:41 debian-keyring g++-multilib g++-5-multilib gcc-5-doc libstdc++6-5-dbg build 22-Jan-2020 15:12:41 gcc-multilib manpages-dev flex bison gdb gcc-doc gcc-5-multilib libgcc1-dbg build 22-Jan-2020 15:12:41 libgomp1-dbg libitm1-dbg libatomic1-dbg libasan2-dbg liblsan0-dbg build 22-Jan-2020 15:12:41 libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx0-dbg libquadmath0-dbg build 22-Jan-2020 15:12:41 gettext-doc autopoint gfortran-multilib gfortran-doc gfortran-5-multilib build 22-Jan-2020 15:12:41 gfortran-5-doc libgfortran3-dbg groff liblapack-doc-man liblapack-doc build 22-Jan-2020 15:12:41 glibc-doc libdata-dump-perl icu-doc libcrypt-ssleay-perl liblzma-doc build 22-Jan-2020 15:12:41 ncurses-doc readline-doc libstdc++-5-doc tcl8.6 tk8.6 libauthen-ntlm-perl build 22-Jan-2020 15:12:41 make-doc less www-browser ed diffutils-doc perl-doc build 22-Jan-2020 15:12:41 libterm-readline-gnu-perl | libterm-readline-perl-perl libmail-box-perl build 22-Jan-2020 15:12:41 python-doc python-tk python-setuptools python-rsvg python-cairo ess build 22-Jan-2020 15:12:41 r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base build 22-Jan-2020 15:12:41 texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra build 22-Jan-2020 15:12:41 texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo build 22-Jan-2020 15:12:41 gvfs-bin build 22-Jan-2020 15:12:41 Recommended packages: build 22-Jan-2020 15:12:41 fakeroot libalgorithm-merge-perl libasprintf-dev libgettextpo-dev bzip2-doc build 22-Jan-2020 15:12:41 manpages manpages-dev libfile-fcntllock-perl libglib2.0-data build 22-Jan-2020 15:12:41 shared-mime-info xdg-user-dirs libhtml-format-perl libhtml-form-perl build 22-Jan-2020 15:12:41 libhttp-daemon-perl libmailtools-perl xml-core ifupdown rename build 22-Jan-2020 15:12:41 libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl build 22-Jan-2020 15:12:41 libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils build 22-Jan-2020 15:12:41 The following NEW packages will be installed: build 22-Jan-2020 15:12:41 autoconf automake autotools-dev binutils bsdmainutils build-essential bzip2 build 22-Jan-2020 15:12:41 ca-certificates cdbs cpp cpp-5 debhelper dh-strip-nondeterminism build 22-Jan-2020 15:12:41 dh-translations dpkg-dev file fontconfig fontconfig-config fonts-dejavu-core build 22-Jan-2020 15:12:41 g++ g++-5 gcc gcc-5 gettext gettext-base gfortran gfortran-5 groff-base build 22-Jan-2020 15:12:41 icu-devtools intltool intltool-debian libarchive-zip-perl libasan2 build 22-Jan-2020 15:12:41 libasprintf0v5 libatomic1 libblas-common libblas-dev libblas3 libbz2-dev build 22-Jan-2020 15:12:41 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcroco3 libcurl3 build 22-Jan-2020 15:12:41 libdatrie1 libdpkg-perl libencode-locale-perl libfile-listing-perl build 22-Jan-2020 15:12:41 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-5-dev build 22-Jan-2020 15:12:41 libgdbm3 libgfortran-5-dev libgfortran3 libglib2.0-0 libgomp1 libgraphite2-3 build 22-Jan-2020 15:12:41 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl build 22-Jan-2020 15:12:41 libhttp-cookies-perl libhttp-date-perl libhttp-message-perl build 22-Jan-2020 15:12:41 libhttp-negotiate-perl libice6 libicu-dev libicu55 libio-html-perl build 22-Jan-2020 15:12:41 libio-socket-ssl-perl libisl15 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 build 22-Jan-2020 15:12:41 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblsan0 build 22-Jan-2020 15:12:41 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic1 build 22-Jan-2020 15:12:41 libmpc3 libmpfr4 libmpx0 libncurses5-dev libnet-http-perl libnet-ssleay-perl build 22-Jan-2020 15:12:41 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils build 22-Jan-2020 15:12:41 libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.22 build 22-Jan-2020 15:12:41 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libpython-stdlib build 22-Jan-2020 15:12:41 libquadmath0 libreadline-dev libreadline6-dev libsigsegv2 libsm6 build 22-Jan-2020 15:12:41 libstdc++-5-dev libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl build 22-Jan-2020 15:12:41 libtinfo-dev libtk8.6 libtsan0 libubsan0 libunistring0 liburi-perl build 22-Jan-2020 15:12:41 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 build 22-Jan-2020 15:12:41 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 build 22-Jan-2020 15:12:41 libxml-parser-perl libxml2 libxmuu1 libxrender1 libxss1 libxt6 build 22-Jan-2020 15:12:41 linux-libc-dev m4 make man-db netbase openssl patch perl perl-modules-5.22 build 22-Jan-2020 15:12:41 pkg-config po-debconf python python-minimal python-pkg-resources build 22-Jan-2020 15:12:41 python-scour python-six r-base-core r-base-dev tzdata ucf unzip x11-common build 22-Jan-2020 15:12:41 xauth xdg-utils xz-utils zip zlib1g-dev build 22-Jan-2020 15:12:41 The following packages will be upgraded: build 22-Jan-2020 15:12:41 zlib1g build 22-Jan-2020 15:12:42 1 upgraded, 170 newly installed, 0 to remove and 0 not upgraded. build 22-Jan-2020 15:12:42 Need to get 115 MB of archives. build 22-Jan-2020 15:12:42 After this operation, 409 MB of additional disk space will be used. build 22-Jan-2020 15:12:42 Get:1 http://cran.rstudio.com/bin/linux/ubuntu xenial/ r-base-core 3.4.4-1xenial0 [23.2 MB] build 22-Jan-2020 15:12:42 Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgdbm3 amd64 1.8.3-13.1 [16.9 kB] build 22-Jan-2020 15:12:42 Get:3 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 zlib1g amd64 1:1.2.8.dfsg-2ubuntu4.3 [51.2 kB] build 22-Jan-2020 15:12:42 Get:4 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libglib2.0-0 amd64 2.48.2-0ubuntu4.4 [1120 kB] build 22-Jan-2020 15:12:42 Get:5 http://cran.rstudio.com/bin/linux/ubuntu xenial/ r-base-dev 3.4.4-1xenial0 [4416 B] build 22-Jan-2020 15:12:43 Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] build 22-Jan-2020 15:12:43 Get:7 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxdmcp6 amd64 1:1.1.2-1.1 [11.0 kB] build 22-Jan-2020 15:12:43 Get:8 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb1 amd64 1.11.1-1ubuntu1 [40.0 kB] build 22-Jan-2020 15:12:43 Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-data all 2:1.6.3-1ubuntu2.1 [113 kB] build 22-Jan-2020 15:12:43 Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-6 amd64 2:1.6.3-1ubuntu2.1 [570 kB] build 22-Jan-2020 15:12:43 Get:11 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB] build 22-Jan-2020 15:12:43 Get:12 http://archive.ubuntu.com/ubuntu xenial/main amd64 groff-base amd64 1.22.3-7 [1151 kB] build 22-Jan-2020 15:12:43 Get:13 http://archive.ubuntu.com/ubuntu xenial/main amd64 bsdmainutils amd64 9.0.6ubuntu3 [174 kB] build 22-Jan-2020 15:12:43 Get:14 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpipeline1 amd64 1.4.1-2 [24.6 kB] build 22-Jan-2020 15:12:43 Get:15 http://archive.ubuntu.com/ubuntu xenial/main amd64 man-db amd64 2.7.5-1 [854 kB] build 22-Jan-2020 15:12:43 Get:16 http://archive.ubuntu.com/ubuntu xenial/main amd64 fonts-dejavu-core all 2.35-1 [1039 kB] build 22-Jan-2020 15:12:43 Get:17 http://archive.ubuntu.com/ubuntu xenial/main amd64 ucf all 3.0036 [52.9 kB] build 22-Jan-2020 15:12:43 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 fontconfig-config all 2.11.94-0ubuntu1.1 [49.9 kB] build 22-Jan-2020 15:12:43 Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpng12-0 amd64 1.2.54-1ubuntu1.1 [116 kB] build 22-Jan-2020 15:12:43 Get:20 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfreetype6 amd64 2.6.1-0.1ubuntu2.4 [315 kB] build 22-Jan-2020 15:12:43 Get:21 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfontconfig1 amd64 2.11.94-0ubuntu1.1 [131 kB] build 22-Jan-2020 15:12:43 Get:22 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 fontconfig amd64 2.11.94-0ubuntu1.1 [178 kB] build 22-Jan-2020 15:12:43 Get:23 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 x11-common all 1:7.7+13ubuntu3.1 [22.9 kB] build 22-Jan-2020 15:12:43 Get:24 http://archive.ubuntu.com/ubuntu xenial/main amd64 libice6 amd64 2:1.0.9-1 [39.2 kB] build 22-Jan-2020 15:12:43 Get:25 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libjpeg-turbo8 amd64 1.4.2-0ubuntu3.3 [111 kB] build 22-Jan-2020 15:12:44 Get:26 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpcrecpp0v5 amd64 2:8.38-3.1 [15.2 kB] build 22-Jan-2020 15:12:44 Get:27 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsigsegv2 amd64 2.10-4 [14.1 kB] build 22-Jan-2020 15:12:44 Get:28 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB] build 22-Jan-2020 15:12:44 Get:29 http://archive.ubuntu.com/ubuntu xenial/main amd64 libunistring0 amd64 0.9.3-5.2ubuntu1 [279 kB] build 22-Jan-2020 15:12:44 Get:30 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxrender1 amd64 1:0.9.9-0ubuntu1 [18.5 kB] build 22-Jan-2020 15:12:44 Get:31 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxft2 amd64 2.3.2-1 [36.1 kB] build 22-Jan-2020 15:12:44 Get:32 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxss1 amd64 1:1.2.2-1 [8582 B] build 22-Jan-2020 15:12:44 Get:33 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 perl-modules-5.22 all 5.22.1-9ubuntu0.6 [2629 kB] build 22-Jan-2020 15:12:44 Get:34 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libperl5.22 amd64 5.22.1-9ubuntu0.6 [3405 kB] build 22-Jan-2020 15:12:44 Get:35 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 perl amd64 5.22.1-9ubuntu0.6 [237 kB] build 22-Jan-2020 15:12:44 Get:36 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-minimal amd64 2.7.12-1~16.04 [28.1 kB] build 22-Jan-2020 15:12:44 Get:37 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython-stdlib amd64 2.7.12-1~16.04 [7768 B] build 22-Jan-2020 15:12:44 Get:38 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python amd64 2.7.12-1~16.04 [137 kB] build 22-Jan-2020 15:12:44 Get:39 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjbig0 amd64 2.1-3.1 [26.6 kB] build 22-Jan-2020 15:12:44 Get:40 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpfr4 amd64 3.1.4-1 [191 kB] build 22-Jan-2020 15:12:44 Get:41 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpc3 amd64 1.0.3-1 [39.7 kB] build 22-Jan-2020 15:12:44 Get:42 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 tzdata all 2019c-0ubuntu0.16.04 [168 kB] build 22-Jan-2020 15:12:44 Get:43 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 bzip2 amd64 1.0.6-8ubuntu0.2 [32.5 kB] build 22-Jan-2020 15:12:44 Get:44 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmagic1 amd64 1:5.25-2ubuntu1.3 [216 kB] build 22-Jan-2020 15:12:45 Get:45 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 file amd64 1:5.25-2ubuntu1.3 [21.3 kB] build 22-Jan-2020 15:12:45 Get:46 http://archive.ubuntu.com/ubuntu xenial/main amd64 netbase all 5.3 [12.9 kB] build 22-Jan-2020 15:12:45 Get:47 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 openssl amd64 1.0.2g-1ubuntu4.15 [492 kB] build 22-Jan-2020 15:12:45 Get:48 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 ca-certificates all 20170717~16.04.2 [167 kB] build 22-Jan-2020 15:12:45 Get:49 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasprintf0v5 amd64 0.19.7-2ubuntu3.1 [6568 B] build 22-Jan-2020 15:12:45 Get:50 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gettext-base amd64 0.19.7-2ubuntu3.1 [48.0 kB] build 22-Jan-2020 15:12:45 Get:51 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libicu55 amd64 55.1-7ubuntu0.4 [7646 kB] build 22-Jan-2020 15:12:46 Get:52 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libxml2 amd64 2.9.3+dfsg1-1ubuntu0.6 [697 kB] build 22-Jan-2020 15:12:46 Get:53 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxmuu1 amd64 2:1.1.2-2 [9674 B] build 22-Jan-2020 15:12:46 Get:54 http://archive.ubuntu.com/ubuntu xenial/main amd64 xauth amd64 1:1.0.9-1ubuntu2 [22.7 kB] build 22-Jan-2020 15:12:46 Get:55 http://archive.ubuntu.com/ubuntu xenial/main amd64 m4 amd64 1.4.17-5 [195 kB] build 22-Jan-2020 15:12:46 Get:56 http://archive.ubuntu.com/ubuntu xenial/main amd64 autoconf all 2.69-9 [321 kB] build 22-Jan-2020 15:12:46 Get:57 http://archive.ubuntu.com/ubuntu xenial/main amd64 autotools-dev all 20150820.1 [39.8 kB] build 22-Jan-2020 15:12:46 Get:58 http://archive.ubuntu.com/ubuntu xenial/main amd64 automake all 1:1.15-4ubuntu1 [510 kB] build 22-Jan-2020 15:12:46 Get:59 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 binutils amd64 2.26.1-1ubuntu1~16.04.8 [2312 kB] build 22-Jan-2020 15:12:46 Get:60 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc-dev-bin amd64 2.23-0ubuntu11 [68.5 kB] build 22-Jan-2020 15:12:46 Get:61 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 linux-libc-dev amd64 4.4.0-171.200 [844 kB] build 22-Jan-2020 15:12:46 Get:62 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc6-dev amd64 2.23-0ubuntu11 [2086 kB] build 22-Jan-2020 15:12:46 Get:63 http://archive.ubuntu.com/ubuntu xenial/main amd64 libisl15 amd64 0.16.1-1 [524 kB] build 22-Jan-2020 15:12:46 Get:64 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 cpp-5 amd64 5.4.0-6ubuntu1~16.04.12 [7783 kB] build 22-Jan-2020 15:12:46 Get:65 http://archive.ubuntu.com/ubuntu xenial/main amd64 cpp amd64 4:5.3.1-1ubuntu1 [27.7 kB] build 22-Jan-2020 15:12:46 Get:66 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcc1-0 amd64 5.4.0-6ubuntu1~16.04.12 [38.8 kB] build 22-Jan-2020 15:12:47 Get:67 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgomp1 amd64 5.4.0-6ubuntu1~16.04.12 [55.2 kB] build 22-Jan-2020 15:12:47 Get:68 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libitm1 amd64 5.4.0-6ubuntu1~16.04.12 [27.4 kB] build 22-Jan-2020 15:12:47 Get:69 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libatomic1 amd64 5.4.0-6ubuntu1~16.04.12 [8892 B] build 22-Jan-2020 15:12:47 Get:70 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasan2 amd64 5.4.0-6ubuntu1~16.04.12 [265 kB] build 22-Jan-2020 15:12:47 Get:71 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 liblsan0 amd64 5.4.0-6ubuntu1~16.04.12 [105 kB] build 22-Jan-2020 15:12:47 Get:72 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtsan0 amd64 5.4.0-6ubuntu1~16.04.12 [244 kB] build 22-Jan-2020 15:12:47 Get:73 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libubsan0 amd64 5.4.0-6ubuntu1~16.04.12 [95.3 kB] build 22-Jan-2020 15:12:47 Get:74 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcilkrts5 amd64 5.4.0-6ubuntu1~16.04.12 [40.0 kB] build 22-Jan-2020 15:12:47 Get:75 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmpx0 amd64 5.4.0-6ubuntu1~16.04.12 [9762 B] build 22-Jan-2020 15:12:47 Get:76 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libquadmath0 amd64 5.4.0-6ubuntu1~16.04.12 [131 kB] build 22-Jan-2020 15:12:47 Get:77 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgcc-5-dev amd64 5.4.0-6ubuntu1~16.04.12 [2239 kB] build 22-Jan-2020 15:12:47 Get:78 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gcc-5 amd64 5.4.0-6ubuntu1~16.04.12 [8612 kB] build 22-Jan-2020 15:12:48 Get:79 http://archive.ubuntu.com/ubuntu xenial/main amd64 gcc amd64 4:5.3.1-1ubuntu1 [5244 B] build 22-Jan-2020 15:12:48 Get:80 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libstdc++-5-dev amd64 5.4.0-6ubuntu1~16.04.12 [1428 kB] build 22-Jan-2020 15:12:48 Get:81 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 g++-5 amd64 5.4.0-6ubuntu1~16.04.12 [8430 kB] build 22-Jan-2020 15:12:48 Get:82 http://archive.ubuntu.com/ubuntu xenial/main amd64 g++ amd64 4:5.3.1-1ubuntu1 [1504 B] build 22-Jan-2020 15:12:48 Get:83 http://archive.ubuntu.com/ubuntu xenial/main amd64 make amd64 4.1-6 [151 kB] build 22-Jan-2020 15:12:48 Get:84 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdpkg-perl all 1.18.4ubuntu1.6 [195 kB] build 22-Jan-2020 15:12:48 Get:85 http://archive.ubuntu.com/ubuntu xenial/main amd64 xz-utils amd64 5.1.1alpha+20120614-2ubuntu2 [78.8 kB] build 22-Jan-2020 15:12:48 Get:86 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 patch amd64 2.7.5-1ubuntu0.16.04.2 [90.8 kB] build 22-Jan-2020 15:12:48 Get:87 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 dpkg-dev all 1.18.4ubuntu1.6 [584 kB] build 22-Jan-2020 15:12:49 Get:88 http://archive.ubuntu.com/ubuntu xenial/main amd64 build-essential amd64 12.1ubuntu2 [4758 B] build 22-Jan-2020 15:12:49 Get:89 http://archive.ubuntu.com/ubuntu xenial/main amd64 libcroco3 amd64 0.6.11-1 [81.6 kB] build 22-Jan-2020 15:12:49 Get:90 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gettext amd64 0.19.7-2ubuntu3.1 [1082 kB] build 22-Jan-2020 15:12:49 Get:91 http://archive.ubuntu.com/ubuntu xenial/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] build 22-Jan-2020 15:12:49 Get:92 http://archive.ubuntu.com/ubuntu xenial/main amd64 po-debconf all 1.0.19 [234 kB] build 22-Jan-2020 15:12:49 Get:93 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libarchive-zip-perl all 1.56-2ubuntu0.1 [84.7 kB] build 22-Jan-2020 15:12:49 Get:94 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfile-stripnondeterminism-perl all 0.015-1 [10.3 kB] build 22-Jan-2020 15:12:49 Get:95 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] build 22-Jan-2020 15:12:49 Get:96 http://archive.ubuntu.com/ubuntu xenial/main amd64 dh-strip-nondeterminism all 0.015-1 [4864 B] build 22-Jan-2020 15:12:49 Get:97 http://archive.ubuntu.com/ubuntu xenial/main amd64 debhelper all 9.20160115ubuntu3 [739 kB] build 22-Jan-2020 15:12:49 Get:98 http://archive.ubuntu.com/ubuntu xenial/main amd64 liburi-perl all 1.71-1 [76.9 kB] build 22-Jan-2020 15:12:49 Get:99 http://archive.ubuntu.com/ubuntu xenial/main amd64 libencode-locale-perl all 1.05-1 [12.3 kB] build 22-Jan-2020 15:12:49 Get:100 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-date-perl all 6.02-1 [10.4 kB] build 22-Jan-2020 15:12:49 Get:101 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfile-listing-perl all 6.04-1 [9774 B] build 22-Jan-2020 15:12:49 Get:102 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhtml-tagset-perl all 3.20-2 [13.5 kB] build 22-Jan-2020 15:12:49 Get:103 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhtml-parser-perl amd64 3.72-1 [86.1 kB] build 22-Jan-2020 15:12:49 Get:104 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhtml-tree-perl all 5.03-2 [197 kB] build 22-Jan-2020 15:12:49 Get:105 http://archive.ubuntu.com/ubuntu xenial/main amd64 libio-html-perl all 1.001-1 [14.9 kB] build 22-Jan-2020 15:12:49 Get:106 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblwp-mediatypes-perl all 6.02-1 [21.7 kB] build 22-Jan-2020 15:12:49 Get:107 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-message-perl all 6.11-1 [74.3 kB] build 22-Jan-2020 15:12:50 Get:108 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-cookies-perl all 6.01-1 [17.2 kB] build 22-Jan-2020 15:12:50 Get:109 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-negotiate-perl all 6.00-2 [13.4 kB] build 22-Jan-2020 15:12:50 Get:110 http://archive.ubuntu.com/ubuntu xenial/main amd64 libnet-ssleay-perl amd64 1.72-1build1 [259 kB] build 22-Jan-2020 15:12:50 Get:111 http://archive.ubuntu.com/ubuntu xenial/main amd64 libio-socket-ssl-perl all 2.024-1 [159 kB] build 22-Jan-2020 15:12:50 Get:112 http://archive.ubuntu.com/ubuntu xenial/main amd64 libnet-http-perl all 6.09-1 [24.0 kB] build 22-Jan-2020 15:12:50 Get:113 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblwp-protocol-https-perl all 6.06-2 [8682 B] build 22-Jan-2020 15:12:50 Get:114 http://archive.ubuntu.com/ubuntu xenial/main amd64 libwww-robotrules-perl all 6.01-1 [14.1 kB] build 22-Jan-2020 15:12:50 Get:115 http://archive.ubuntu.com/ubuntu xenial/main amd64 libwww-perl all 6.15-1 [146 kB] build 22-Jan-2020 15:12:50 Get:116 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxml-parser-perl amd64 2.44-1build1 [200 kB] build 22-Jan-2020 15:12:50 Get:117 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 intltool all 0.51.0-2ubuntu1.16.04.1 [45.0 kB] build 22-Jan-2020 15:12:50 Get:118 http://archive.ubuntu.com/ubuntu xenial/main amd64 dh-translations all 129 [22.1 kB] build 22-Jan-2020 15:12:50 Get:119 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-six all 1.10.0-3 [10.9 kB] build 22-Jan-2020 15:12:50 Get:120 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-pkg-resources all 20.7.0-1 [108 kB] build 22-Jan-2020 15:12:50 Get:121 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-scour all 0.32-1 [42.7 kB] build 22-Jan-2020 15:12:50 Get:122 http://archive.ubuntu.com/ubuntu xenial/main amd64 cdbs all 0.4.130ubuntu2 [42.8 kB] build 22-Jan-2020 15:12:50 Get:123 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran3 amd64 5.4.0-6ubuntu1~16.04.12 [260 kB] build 22-Jan-2020 15:12:50 Get:124 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran-5-dev amd64 5.4.0-6ubuntu1~16.04.12 [291 kB] build 22-Jan-2020 15:12:51 Get:125 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gfortran-5 amd64 5.4.0-6ubuntu1~16.04.12 [8158 kB] build 22-Jan-2020 15:12:51 Get:126 http://archive.ubuntu.com/ubuntu xenial/main amd64 gfortran amd64 4:5.3.1-1ubuntu1 [1288 B] build 22-Jan-2020 15:12:51 Get:127 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 icu-devtools amd64 55.1-7ubuntu0.4 [166 kB] build 22-Jan-2020 15:12:51 Get:128 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas-common amd64 3.6.0-2ubuntu2 [5342 B] build 22-Jan-2020 15:12:51 Get:129 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas3 amd64 3.6.0-2ubuntu2 [147 kB] build 22-Jan-2020 15:12:52 Get:130 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas-dev amd64 3.6.0-2ubuntu2 [153 kB] build 22-Jan-2020 15:12:52 Get:131 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libbz2-dev amd64 1.0.6-8ubuntu0.2 [29.0 kB] build 22-Jan-2020 15:12:52 Get:132 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpixman-1-0 amd64 0.33.6-1 [231 kB] build 22-Jan-2020 15:12:52 Get:133 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-render0 amd64 1.11.1-1ubuntu1 [11.4 kB] build 22-Jan-2020 15:12:52 Get:134 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-shm0 amd64 1.11.1-1ubuntu1 [5588 B] build 22-Jan-2020 15:12:52 Get:135 http://archive.ubuntu.com/ubuntu xenial/main amd64 libcairo2 amd64 1.14.6-1 [555 kB] build 22-Jan-2020 15:12:52 Get:136 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcurl3 amd64 7.47.0-1ubuntu2.14 [186 kB] build 22-Jan-2020 15:12:52 Get:137 http://archive.ubuntu.com/ubuntu xenial/main amd64 libdatrie1 amd64 0.2.10-2 [17.3 kB] build 22-Jan-2020 15:12:52 Get:138 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgraphite2-3 amd64 1.3.10-0ubuntu0.16.04.1 [71.7 kB] build 22-Jan-2020 15:12:52 Get:139 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libharfbuzz0b amd64 1.0.1-1ubuntu0.1 [140 kB] build 22-Jan-2020 15:12:52 Get:140 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libicu-dev amd64 55.1-7ubuntu0.4 [8566 kB] build 22-Jan-2020 15:12:52 Get:141 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libjpeg-turbo8-dev amd64 1.4.2-0ubuntu3.3 [255 kB] build 22-Jan-2020 15:12:52 Get:142 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] build 22-Jan-2020 15:12:52 Get:143 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1552 B] build 22-Jan-2020 15:12:52 Get:144 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B] build 22-Jan-2020 15:12:52 Get:145 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblapack3 amd64 3.6.0-2ubuntu2 [1938 kB] build 22-Jan-2020 15:12:52 Get:146 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblapack-dev amd64 3.6.0-2ubuntu2 [1948 kB] build 22-Jan-2020 15:12:53 Get:147 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtinfo-dev amd64 6.0+20160213-1ubuntu1 [77.4 kB] build 22-Jan-2020 15:12:53 Get:148 http://archive.ubuntu.com/ubuntu xenial/main amd64 libncurses5-dev amd64 6.0+20160213-1ubuntu1 [175 kB] build 22-Jan-2020 15:12:53 Get:149 http://archive.ubuntu.com/ubuntu xenial/main amd64 libthai-data all 0.1.24-2 [131 kB] build 22-Jan-2020 15:12:53 Get:150 http://archive.ubuntu.com/ubuntu xenial/main amd64 libthai0 amd64 0.1.24-2 [17.3 kB] build 22-Jan-2020 15:12:53 Get:151 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpango-1.0-0 amd64 1.38.1-1 [148 kB] build 22-Jan-2020 15:12:53 Get:152 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpangoft2-1.0-0 amd64 1.38.1-1 [33.3 kB] build 22-Jan-2020 15:12:53 Get:153 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpangocairo-1.0-0 amd64 1.38.1-1 [20.5 kB] build 22-Jan-2020 15:12:53 Get:154 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpaper1 amd64 1.1.24+nmu4ubuntu1 [13.7 kB] build 22-Jan-2020 15:12:53 Get:155 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpaper-utils amd64 1.1.24+nmu4ubuntu1 [8276 B] build 22-Jan-2020 15:12:53 Get:156 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpcre16-3 amd64 2:8.38-3.1 [144 kB] build 22-Jan-2020 15:12:53 Get:157 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpcre32-3 amd64 2:8.38-3.1 [136 kB] build 22-Jan-2020 15:12:53 Get:158 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpcre3-dev amd64 2:8.38-3.1 [525 kB] build 22-Jan-2020 15:12:54 Get:159 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-2ubuntu4.3 [167 kB] build 22-Jan-2020 15:12:54 Get:160 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpng12-dev amd64 1.2.54-1ubuntu1.1 [183 kB] build 22-Jan-2020 15:12:54 Get:161 http://archive.ubuntu.com/ubuntu xenial/main amd64 libreadline6-dev amd64 6.3-8ubuntu2 [124 kB] build 22-Jan-2020 15:12:54 Get:162 http://archive.ubuntu.com/ubuntu xenial/main amd64 libreadline-dev amd64 6.3-8ubuntu2 [992 B] build 22-Jan-2020 15:12:54 Get:163 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtcl8.6 amd64 8.6.5+dfsg-2 [875 kB] build 22-Jan-2020 15:12:54 Get:164 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtiff5 amd64 4.0.6-1ubuntu0.7 [149 kB] build 22-Jan-2020 15:12:54 Get:165 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtk8.6 amd64 8.6.5-1 [693 kB] build 22-Jan-2020 15:12:54 Get:166 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxt6 amd64 1:1.1.5-0ubuntu1 [160 kB] build 22-Jan-2020 15:12:54 Get:167 http://archive.ubuntu.com/ubuntu xenial/main amd64 pkg-config amd64 0.29.1-0ubuntu1 [45.0 kB] build 22-Jan-2020 15:12:54 Get:168 http://archive.ubuntu.com/ubuntu xenial/main amd64 zip amd64 3.0-11 [158 kB] build 22-Jan-2020 15:12:54 Get:169 http://archive.ubuntu.com/ubuntu xenial/main amd64 unzip amd64 6.0-20ubuntu1 [158 kB] build 22-Jan-2020 15:12:54 Get:170 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 xdg-utils all 1.1.1-1ubuntu1.16.04.3 [59.6 kB] build 22-Jan-2020 15:12:54 Get:171 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblzma-dev amd64 5.1.1alpha+20120614-2ubuntu2 [137 kB] build 22-Jan-2020 15:12:55 debconf: delaying package configuration, since apt-utils is not installed build 22-Jan-2020 15:12:55 Fetched 115 MB in 12s (8937 kB/s) build 22-Jan-2020 15:12:56 Selecting previously unselected package libgdbm3:amd64. build 22-Jan-2020 15:12:56 (Reading database ... build 22-Jan-2020 15:12:56 (Reading database ... 5% build 22-Jan-2020 15:12:56 (Reading database ... 10% build 22-Jan-2020 15:12:56 (Reading database ... 15% build 22-Jan-2020 15:12:56 (Reading database ... 20% build 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.../libgdbm3_1.8.3-13.1_amd64.deb ... build 22-Jan-2020 15:12:56 Unpacking libgdbm3:amd64 (1.8.3-13.1) ... build 22-Jan-2020 15:12:56 Preparing to unpack .../zlib1g_1%3a1.2.8.dfsg-2ubuntu4.3_amd64.deb ... build 22-Jan-2020 15:12:57 Unpacking zlib1g:amd64 (1:1.2.8.dfsg-2ubuntu4.3) over (1:1.2.8.dfsg-2ubuntu4.1) ... build 22-Jan-2020 15:12:57 Processing triggers for libc-bin (2.23-0ubuntu11) ... build 22-Jan-2020 15:12:57 Setting up zlib1g:amd64 (1:1.2.8.dfsg-2ubuntu4.3) ... build 22-Jan-2020 15:12:57 Processing triggers for libc-bin (2.23-0ubuntu11) ... build 22-Jan-2020 15:12:58 Selecting previously unselected package libglib2.0-0:amd64. build 22-Jan-2020 15:12:58 (Reading database ... build 22-Jan-2020 15:12:58 (Reading database ... 5% build 22-Jan-2020 15:12:58 (Reading database ... 10% build 22-Jan-2020 15:12:58 (Reading database ... 15% build 22-Jan-2020 15:12:58 (Reading database ... 20% build 22-Jan-2020 15:12:58 (Reading database ... 25% build 22-Jan-2020 15:12:58 (Reading 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libpango-1.0-0:amd64 (1.38.1-1) ... build 22-Jan-2020 15:14:29 Selecting previously unselected package libpangoft2-1.0-0:amd64. build 22-Jan-2020 15:14:29 Preparing to unpack .../libpangoft2-1.0-0_1.38.1-1_amd64.deb ... build 22-Jan-2020 15:14:30 Unpacking libpangoft2-1.0-0:amd64 (1.38.1-1) ... build 22-Jan-2020 15:14:30 Selecting previously unselected package libpangocairo-1.0-0:amd64. build 22-Jan-2020 15:14:30 Preparing to unpack .../libpangocairo-1.0-0_1.38.1-1_amd64.deb ... build 22-Jan-2020 15:14:30 Unpacking libpangocairo-1.0-0:amd64 (1.38.1-1) ... build 22-Jan-2020 15:14:31 Selecting previously unselected package libpaper1:amd64. build 22-Jan-2020 15:14:31 Preparing to unpack .../libpaper1_1.1.24+nmu4ubuntu1_amd64.deb ... build 22-Jan-2020 15:14:31 Unpacking libpaper1:amd64 (1.1.24+nmu4ubuntu1) ... build 22-Jan-2020 15:14:31 Selecting previously unselected package libpaper-utils. build 22-Jan-2020 15:14:31 Preparing to unpack .../libpaper-utils_1.1.24+nmu4ubuntu1_amd64.deb ... build 22-Jan-2020 15:14:31 Unpacking libpaper-utils (1.1.24+nmu4ubuntu1) ... build 22-Jan-2020 15:14:31 Selecting previously unselected package libpcre16-3:amd64. build 22-Jan-2020 15:14:31 Preparing to unpack .../libpcre16-3_2%3a8.38-3.1_amd64.deb ... build 22-Jan-2020 15:14:31 Unpacking libpcre16-3:amd64 (2:8.38-3.1) ... build 22-Jan-2020 15:14:32 Selecting previously unselected package libpcre32-3:amd64. build 22-Jan-2020 15:14:32 Preparing to unpack .../libpcre32-3_2%3a8.38-3.1_amd64.deb ... build 22-Jan-2020 15:14:32 Unpacking libpcre32-3:amd64 (2:8.38-3.1) ... build 22-Jan-2020 15:14:32 Selecting previously unselected package libpcre3-dev:amd64. build 22-Jan-2020 15:14:32 Preparing to unpack .../libpcre3-dev_2%3a8.38-3.1_amd64.deb ... build 22-Jan-2020 15:14:32 Unpacking libpcre3-dev:amd64 (2:8.38-3.1) ... build 22-Jan-2020 15:14:33 Selecting previously unselected package zlib1g-dev:amd64. build 22-Jan-2020 15:14:33 Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2ubuntu4.3_amd64.deb ... build 22-Jan-2020 15:14:33 Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4.3) ... build 22-Jan-2020 15:14:34 Selecting previously unselected package libpng12-dev:amd64. build 22-Jan-2020 15:14:34 Preparing to unpack .../libpng12-dev_1.2.54-1ubuntu1.1_amd64.deb ... build 22-Jan-2020 15:14:34 Unpacking libpng12-dev:amd64 (1.2.54-1ubuntu1.1) ... build 22-Jan-2020 15:14:34 Selecting previously unselected package libreadline6-dev:amd64. build 22-Jan-2020 15:14:34 Preparing to unpack .../libreadline6-dev_6.3-8ubuntu2_amd64.deb ... build 22-Jan-2020 15:14:34 Unpacking libreadline6-dev:amd64 (6.3-8ubuntu2) ... build 22-Jan-2020 15:14:34 Selecting previously unselected package libreadline-dev:amd64. build 22-Jan-2020 15:14:34 Preparing to unpack .../libreadline-dev_6.3-8ubuntu2_amd64.deb ... build 22-Jan-2020 15:14:34 Unpacking libreadline-dev:amd64 (6.3-8ubuntu2) ... build 22-Jan-2020 15:14:35 Selecting previously unselected package 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build 22-Jan-2020 15:14:40 Unpacking r-base-core (3.4.4-1xenial0) ... build 22-Jan-2020 15:14:42 Selecting previously unselected package liblzma-dev:amd64. build 22-Jan-2020 15:14:42 Preparing to unpack .../liblzma-dev_5.1.1alpha+20120614-2ubuntu2_amd64.deb ... build 22-Jan-2020 15:14:42 Unpacking liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... build 22-Jan-2020 15:14:43 Selecting previously unselected package r-base-dev. build 22-Jan-2020 15:14:43 Preparing to unpack .../r-base-dev_3.4.4-1xenial0_all.deb ... build 22-Jan-2020 15:14:43 Unpacking r-base-dev (3.4.4-1xenial0) ... build 22-Jan-2020 15:14:43 Processing triggers for libc-bin (2.23-0ubuntu11) ... build 22-Jan-2020 15:14:43 Processing triggers for mime-support (3.59ubuntu1) ... build 22-Jan-2020 15:14:44 Setting up libgdbm3:amd64 (1.8.3-13.1) ... build 22-Jan-2020 15:14:44 Setting up libglib2.0-0:amd64 (2.48.2-0ubuntu4.4) ... build 22-Jan-2020 15:14:44 No schema files found: doing nothing. build 22-Jan-2020 15:14:44 Setting up libxau6:amd64 (1:1.0.8-1) ... build 22-Jan-2020 15:14:44 Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... build 22-Jan-2020 15:14:44 Setting up libxcb1:amd64 (1.11.1-1ubuntu1) ... build 22-Jan-2020 15:14:44 Setting up libx11-data (2:1.6.3-1ubuntu2.1) ... build 22-Jan-2020 15:14:45 Setting up libx11-6:amd64 (2:1.6.3-1ubuntu2.1) ... build 22-Jan-2020 15:14:45 Setting up libxext6:amd64 (2:1.3.3-1) ... build 22-Jan-2020 15:14:45 Setting up groff-base (1.22.3-7) ... build 22-Jan-2020 15:14:45 Setting up bsdmainutils (9.0.6ubuntu3) ... build 22-Jan-2020 15:14:46 update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode build 22-Jan-2020 15:14:46 update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode build 22-Jan-2020 15:14:46 Setting up libpipeline1:amd64 (1.4.1-2) ... build 22-Jan-2020 15:14:47 Setting up man-db (2.7.5-1) ... build 22-Jan-2020 15:14:47 debconf: unable to initialize frontend: Dialog build 22-Jan-2020 15:14:47 debconf: (TERM is not set, so the dialog frontend is not usable.) build 22-Jan-2020 15:14:47 debconf: falling back to frontend: Readline build 22-Jan-2020 15:14:47 Building database of manual pages ... build 22-Jan-2020 15:14:56 Setting up fonts-dejavu-core (2.35-1) ... build 22-Jan-2020 15:14:58 Setting up ucf (3.0036) ... build 22-Jan-2020 15:14:58 debconf: unable to initialize frontend: Dialog build 22-Jan-2020 15:14:58 debconf: (TERM is not set, so the dialog frontend is not usable.) build 22-Jan-2020 15:14:58 debconf: falling back to frontend: Readline build 22-Jan-2020 15:14:58 Setting up fontconfig-config (2.11.94-0ubuntu1.1) ... build 22-Jan-2020 15:15:00 Setting up libpng12-0:amd64 (1.2.54-1ubuntu1.1) ... build 22-Jan-2020 15:15:00 Setting up libfreetype6:amd64 (2.6.1-0.1ubuntu2.4) ... build 22-Jan-2020 15:15:00 Setting up libfontconfig1:amd64 (2.11.94-0ubuntu1.1) ... build 22-Jan-2020 15:15:00 Setting up fontconfig (2.11.94-0ubuntu1.1) ... build 22-Jan-2020 15:15:03 Regenerating fonts cache... done. build 22-Jan-2020 15:15:03 Setting up x11-common (1:7.7+13ubuntu3.1) ... build 22-Jan-2020 15:15:04 debconf: unable to initialize frontend: Dialog build 22-Jan-2020 15:15:04 debconf: (TERM is not set, so the dialog frontend is not usable.) build 22-Jan-2020 15:15:04 debconf: falling back to frontend: Readline build 22-Jan-2020 15:15:04 update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults build 22-Jan-2020 15:15:04 invoke-rc.d: could not determine current runlevel build 22-Jan-2020 15:15:04 invoke-rc.d: policy-rc.d denied execution of start. build 22-Jan-2020 15:15:04 Setting up libice6:amd64 (2:1.0.9-1) ... build 22-Jan-2020 15:15:04 Setting up libjpeg-turbo8:amd64 (1.4.2-0ubuntu3.3) ... build 22-Jan-2020 15:15:04 Setting up libpcrecpp0v5:amd64 (2:8.38-3.1) ... build 22-Jan-2020 15:15:04 Setting up libsigsegv2:amd64 (2.10-4) ... build 22-Jan-2020 15:15:04 Setting up libsm6:amd64 (2:1.2.2-1) ... build 22-Jan-2020 15:15:05 Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... build 22-Jan-2020 15:15:05 Setting up libxrender1:amd64 (1:0.9.9-0ubuntu1) ... build 22-Jan-2020 15:15:05 Setting up libxft2:amd64 (2.3.2-1) ... build 22-Jan-2020 15:15:05 Setting up libxss1:amd64 (1:1.2.2-1) ... build 22-Jan-2020 15:15:05 Setting up perl-modules-5.22 (5.22.1-9ubuntu0.6) ... build 22-Jan-2020 15:15:06 Setting up libperl5.22:amd64 (5.22.1-9ubuntu0.6) ... build 22-Jan-2020 15:15:06 Setting up perl (5.22.1-9ubuntu0.6) ... build 22-Jan-2020 15:15:06 update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode build 22-Jan-2020 15:15:06 Setting up libpython-stdlib:amd64 (2.7.12-1~16.04) ... build 22-Jan-2020 15:15:07 Setting up python (2.7.12-1~16.04) ... build 22-Jan-2020 15:15:07 Setting up libjbig0:amd64 (2.1-3.1) ... build 22-Jan-2020 15:15:07 Setting up libmpfr4:amd64 (3.1.4-1) ... build 22-Jan-2020 15:15:08 Setting up libmpc3:amd64 (1.0.3-1) ... build 22-Jan-2020 15:15:08 Setting up tzdata (2019c-0ubuntu0.16.04) ... build 22-Jan-2020 15:15:08 debconf: unable to initialize frontend: Dialog build 22-Jan-2020 15:15:08 debconf: (TERM is not set, so the dialog frontend is not usable.) build 22-Jan-2020 15:15:08 debconf: falling back to frontend: Readline build 22-Jan-2020 15:15:08 build 22-Jan-2020 15:15:08 Current default time zone: 'Etc/UTC' build 22-Jan-2020 15:15:08 Local time is now: Wed Jan 22 21:15:08 UTC 2020. build 22-Jan-2020 15:15:08 Universal Time is now: Wed Jan 22 21:15:08 UTC 2020. build 22-Jan-2020 15:15:08 Run 'dpkg-reconfigure tzdata' if you wish to change it. build 22-Jan-2020 15:15:08 build 22-Jan-2020 15:15:08 Setting up bzip2 (1.0.6-8ubuntu0.2) ... build 22-Jan-2020 15:15:08 Setting up libmagic1:amd64 (1:5.25-2ubuntu1.3) ... build 22-Jan-2020 15:15:09 Setting up file (1:5.25-2ubuntu1.3) ... build 22-Jan-2020 15:15:09 Setting up netbase (5.3) ... build 22-Jan-2020 15:15:09 Setting up openssl (1.0.2g-1ubuntu4.15) ... build 22-Jan-2020 15:15:09 Setting up ca-certificates (20170717~16.04.2) ... build 22-Jan-2020 15:15:10 debconf: unable to initialize frontend: Dialog build 22-Jan-2020 15:15:10 debconf: (TERM is not set, so the dialog frontend is not usable.) build 22-Jan-2020 15:15:10 debconf: falling back to frontend: Readline build 22-Jan-2020 15:15:10 Setting up libasprintf0v5:amd64 (0.19.7-2ubuntu3.1) ... build 22-Jan-2020 15:15:11 Setting up gettext-base (0.19.7-2ubuntu3.1) ... build 22-Jan-2020 15:15:11 Setting up libicu55:amd64 (55.1-7ubuntu0.4) ... build 22-Jan-2020 15:15:11 Setting up libxml2:amd64 (2.9.3+dfsg1-1ubuntu0.6) ... build 22-Jan-2020 15:15:11 Setting up libxmuu1:amd64 (2:1.1.2-2) ... build 22-Jan-2020 15:15:11 Setting up xauth (1:1.0.9-1ubuntu2) ... build 22-Jan-2020 15:15:12 Setting up m4 (1.4.17-5) ... build 22-Jan-2020 15:15:12 Setting up autoconf (2.69-9) ... build 22-Jan-2020 15:15:12 Setting up autotools-dev (20150820.1) ... build 22-Jan-2020 15:15:12 Setting up automake (1:1.15-4ubuntu1) ... build 22-Jan-2020 15:15:12 update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode build 22-Jan-2020 15:15:12 Setting up binutils (2.26.1-1ubuntu1~16.04.8) ... build 22-Jan-2020 15:15:12 Setting up libc-dev-bin (2.23-0ubuntu11) ... build 22-Jan-2020 15:15:12 Setting up linux-libc-dev:amd64 (4.4.0-171.200) ... build 22-Jan-2020 15:15:13 Setting up libc6-dev:amd64 (2.23-0ubuntu11) ... build 22-Jan-2020 15:15:13 Setting up libisl15:amd64 (0.16.1-1) ... build 22-Jan-2020 15:15:13 Setting up cpp-5 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:15:13 Setting up cpp (4:5.3.1-1ubuntu1) ... build 22-Jan-2020 15:15:13 Setting up libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:15:13 Setting up libgomp1:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:15:14 Setting up libitm1:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:15:14 Setting up libatomic1:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:15:14 Setting up libasan2:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:15:15 Setting up liblsan0:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:15:15 Setting up libtsan0:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:15:15 Setting up libubsan0:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:15:15 Setting up libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:15:15 Setting up libmpx0:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:15:16 Setting up libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:15:16 Setting up libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:15:16 Setting up gcc-5 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:15:16 Setting up gcc (4:5.3.1-1ubuntu1) ... build 22-Jan-2020 15:15:16 Setting up libstdc++-5-dev:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:15:16 Setting up g++-5 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:15:17 Setting up g++ (4:5.3.1-1ubuntu1) ... build 22-Jan-2020 15:15:17 update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode build 22-Jan-2020 15:15:17 Setting up make (4.1-6) ... build 22-Jan-2020 15:15:17 Setting up libdpkg-perl (1.18.4ubuntu1.6) ... build 22-Jan-2020 15:15:17 Setting up xz-utils (5.1.1alpha+20120614-2ubuntu2) ... build 22-Jan-2020 15:15:17 update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode build 22-Jan-2020 15:15:17 Setting up patch (2.7.5-1ubuntu0.16.04.2) ... build 22-Jan-2020 15:15:17 Setting up dpkg-dev (1.18.4ubuntu1.6) ... build 22-Jan-2020 15:15:18 Setting up build-essential (12.1ubuntu2) ... build 22-Jan-2020 15:15:18 Setting up libcroco3:amd64 (0.6.11-1) ... build 22-Jan-2020 15:15:18 Setting up gettext (0.19.7-2ubuntu3.1) ... build 22-Jan-2020 15:15:19 Setting up intltool-debian (0.35.0+20060710.4) ... build 22-Jan-2020 15:15:19 Setting up po-debconf (1.0.19) ... build 22-Jan-2020 15:15:19 Setting up libarchive-zip-perl (1.56-2ubuntu0.1) ... build 22-Jan-2020 15:15:19 Setting up libfile-stripnondeterminism-perl (0.015-1) ... build 22-Jan-2020 15:15:19 Setting up libtimedate-perl (2.3000-2) ... build 22-Jan-2020 15:15:20 Setting up liburi-perl (1.71-1) ... build 22-Jan-2020 15:15:20 Setting up libencode-locale-perl (1.05-1) ... build 22-Jan-2020 15:15:20 Setting up libhttp-date-perl (6.02-1) ... build 22-Jan-2020 15:15:20 Setting up libfile-listing-perl (6.04-1) ... build 22-Jan-2020 15:15:20 Setting up libhtml-tagset-perl (3.20-2) ... build 22-Jan-2020 15:15:20 Setting up libhtml-parser-perl (3.72-1) ... build 22-Jan-2020 15:15:21 Setting up libhtml-tree-perl (5.03-2) ... build 22-Jan-2020 15:15:21 Setting up libio-html-perl (1.001-1) ... build 22-Jan-2020 15:15:21 Setting up liblwp-mediatypes-perl (6.02-1) ... build 22-Jan-2020 15:15:21 Setting up libhttp-message-perl (6.11-1) ... build 22-Jan-2020 15:15:21 Setting up libhttp-cookies-perl (6.01-1) ... build 22-Jan-2020 15:15:21 Setting up libhttp-negotiate-perl (6.00-2) ... build 22-Jan-2020 15:15:21 Setting up libnet-ssleay-perl (1.72-1build1) ... build 22-Jan-2020 15:15:22 Setting up libio-socket-ssl-perl (2.024-1) ... build 22-Jan-2020 15:15:22 Setting up libnet-http-perl (6.09-1) ... build 22-Jan-2020 15:15:22 Setting up libwww-robotrules-perl (6.01-1) ... build 22-Jan-2020 15:15:23 Setting up python-six (1.10.0-3) ... build 22-Jan-2020 15:15:24 Setting up python-pkg-resources (20.7.0-1) ... build 22-Jan-2020 15:15:25 Setting up python-scour (0.32-1) ... build 22-Jan-2020 15:15:26 Setting up libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:15:26 Setting up libgfortran-5-dev:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:15:26 Setting up gfortran-5 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:15:27 Setting up gfortran (4:5.3.1-1ubuntu1) ... build 22-Jan-2020 15:15:27 update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode build 22-Jan-2020 15:15:27 update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode build 22-Jan-2020 15:15:27 Setting up icu-devtools (55.1-7ubuntu0.4) ... build 22-Jan-2020 15:15:27 Setting up libblas-common (3.6.0-2ubuntu2) ... build 22-Jan-2020 15:15:28 Setting up libblas3 (3.6.0-2ubuntu2) ... build 22-Jan-2020 15:15:28 update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode build 22-Jan-2020 15:15:28 Setting up libblas-dev (3.6.0-2ubuntu2) ... build 22-Jan-2020 15:15:28 update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode build 22-Jan-2020 15:15:28 Setting up libbz2-dev:amd64 (1.0.6-8ubuntu0.2) ... build 22-Jan-2020 15:15:28 Setting up libpixman-1-0:amd64 (0.33.6-1) ... build 22-Jan-2020 15:15:28 Setting up libxcb-render0:amd64 (1.11.1-1ubuntu1) ... build 22-Jan-2020 15:15:29 Setting up libxcb-shm0:amd64 (1.11.1-1ubuntu1) ... build 22-Jan-2020 15:15:29 Setting up libcairo2:amd64 (1.14.6-1) ... build 22-Jan-2020 15:15:29 Setting up libcurl3:amd64 (7.47.0-1ubuntu2.14) ... build 22-Jan-2020 15:15:29 Setting up libdatrie1:amd64 (0.2.10-2) ... build 22-Jan-2020 15:15:29 Setting up libgraphite2-3:amd64 (1.3.10-0ubuntu0.16.04.1) ... build 22-Jan-2020 15:15:29 Setting up libharfbuzz0b:amd64 (1.0.1-1ubuntu0.1) ... build 22-Jan-2020 15:15:29 Setting up libicu-dev:amd64 (55.1-7ubuntu0.4) ... build 22-Jan-2020 15:15:30 Setting up libjpeg-turbo8-dev:amd64 (1.4.2-0ubuntu3.3) ... build 22-Jan-2020 15:15:30 Setting up libjpeg8:amd64 (8c-2ubuntu8) ... build 22-Jan-2020 15:15:30 Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... build 22-Jan-2020 15:15:30 Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... build 22-Jan-2020 15:15:30 Setting up liblapack3 (3.6.0-2ubuntu2) ... build 22-Jan-2020 15:15:30 update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode build 22-Jan-2020 15:15:30 Setting up liblapack-dev (3.6.0-2ubuntu2) ... build 22-Jan-2020 15:15:31 update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode build 22-Jan-2020 15:15:31 Setting up libtinfo-dev:amd64 (6.0+20160213-1ubuntu1) ... build 22-Jan-2020 15:15:31 Setting up libncurses5-dev:amd64 (6.0+20160213-1ubuntu1) ... build 22-Jan-2020 15:15:31 Setting up libthai-data (0.1.24-2) ... build 22-Jan-2020 15:15:32 Setting up libthai0:amd64 (0.1.24-2) ... build 22-Jan-2020 15:15:32 Setting up libpango-1.0-0:amd64 (1.38.1-1) ... build 22-Jan-2020 15:15:32 Setting up libpangoft2-1.0-0:amd64 (1.38.1-1) ... build 22-Jan-2020 15:15:32 Setting up libpangocairo-1.0-0:amd64 (1.38.1-1) ... build 22-Jan-2020 15:15:33 Setting up libpaper1:amd64 (1.1.24+nmu4ubuntu1) ... build 22-Jan-2020 15:15:33 debconf: unable to initialize frontend: Dialog build 22-Jan-2020 15:15:33 debconf: (TERM is not set, so the dialog frontend is not usable.) build 22-Jan-2020 15:15:33 debconf: falling back to frontend: Readline build 22-Jan-2020 15:15:33 build 22-Jan-2020 15:15:33 Creating config file /etc/papersize with new version build 22-Jan-2020 15:15:33 Setting up libpaper-utils (1.1.24+nmu4ubuntu1) ... build 22-Jan-2020 15:15:33 Setting up libpcre16-3:amd64 (2:8.38-3.1) ... build 22-Jan-2020 15:15:33 Setting up libpcre32-3:amd64 (2:8.38-3.1) ... build 22-Jan-2020 15:15:33 Setting up libpcre3-dev:amd64 (2:8.38-3.1) ... build 22-Jan-2020 15:15:33 Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4.3) ... build 22-Jan-2020 15:15:34 Setting up libpng12-dev:amd64 (1.2.54-1ubuntu1.1) ... build 22-Jan-2020 15:15:34 Setting up libreadline6-dev:amd64 (6.3-8ubuntu2) ... build 22-Jan-2020 15:15:34 Setting up libreadline-dev:amd64 (6.3-8ubuntu2) ... build 22-Jan-2020 15:15:34 Setting up libtcl8.6:amd64 (8.6.5+dfsg-2) ... build 22-Jan-2020 15:15:34 Setting up libtiff5:amd64 (4.0.6-1ubuntu0.7) ... build 22-Jan-2020 15:15:34 Setting up libtk8.6:amd64 (8.6.5-1) ... build 22-Jan-2020 15:15:34 Setting up libxt6:amd64 (1:1.1.5-0ubuntu1) ... build 22-Jan-2020 15:15:35 Setting up pkg-config (0.29.1-0ubuntu1) ... build 22-Jan-2020 15:15:35 Setting up zip (3.0-11) ... build 22-Jan-2020 15:15:35 Setting up unzip (6.0-20ubuntu1) ... build 22-Jan-2020 15:15:36 Setting up xdg-utils (1.1.1-1ubuntu1.16.04.3) ... build 22-Jan-2020 15:15:36 Setting up r-base-core (3.4.4-1xenial0) ... build 22-Jan-2020 15:15:37 debconf: unable to initialize frontend: Dialog build 22-Jan-2020 15:15:37 debconf: (TERM is not set, so the dialog frontend is not usable.) build 22-Jan-2020 15:15:37 debconf: falling back to frontend: Readline build 22-Jan-2020 15:15:37 build 22-Jan-2020 15:15:37 Creating config file /etc/R/Renviron with new version build 22-Jan-2020 15:15:37 Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... build 22-Jan-2020 15:15:37 Setting up debhelper (9.20160115ubuntu3) ... build 22-Jan-2020 15:15:37 Setting up libwww-perl (6.15-1) ... build 22-Jan-2020 15:15:37 Setting up libxml-parser-perl (2.44-1build1) ... build 22-Jan-2020 15:15:38 Setting up intltool (0.51.0-2ubuntu1.16.04.1) ... build 22-Jan-2020 15:15:38 Setting up dh-translations (129) ... build 22-Jan-2020 15:15:38 Setting up cdbs (0.4.130ubuntu2) ... build 22-Jan-2020 15:15:38 Setting up r-base-dev (3.4.4-1xenial0) ... build 22-Jan-2020 15:15:38 Setting up dh-strip-nondeterminism (0.015-1) ... build 22-Jan-2020 15:15:38 Setting up liblwp-protocol-https-perl (6.06-2) ... build 22-Jan-2020 15:15:38 Processing triggers for libc-bin (2.23-0ubuntu11) ... build 22-Jan-2020 15:15:39 Processing triggers for systemd (229-4ubuntu21.23) ... build 22-Jan-2020 15:15:39 Processing triggers for ca-certificates (20170717~16.04.2) ... build 22-Jan-2020 15:15:39 Updating certificates in /etc/ssl/certs... build 22-Jan-2020 15:15:40 148 added, 0 removed; done. build 22-Jan-2020 15:15:40 Running hooks in /etc/ca-certificates/update.d... build 22-Jan-2020 15:15:40 done. build 22-Jan-2020 15:15:41 Installing package into '/usr/local/lib/R/site-library' build 22-Jan-2020 15:15:41 (as 'lib' is unspecified) build 22-Jan-2020 15:15:42 trying URL 'http://cran.rstudio.com/src/contrib/jsonlite_1.6.tar.gz' build 22-Jan-2020 15:15:42 Content type 'application/x-gzip' length 1052728 bytes (1.0 MB) build 22-Jan-2020 15:15:42 ================================================== build 22-Jan-2020 15:15:42 downloaded 1.0 MB build 22-Jan-2020 15:15:42 build 22-Jan-2020 15:15:42 * installing *source* package 'jsonlite' ... build 22-Jan-2020 15:15:42 ** package 'jsonlite' successfully unpacked and MD5 sums checked build 22-Jan-2020 15:15:42 ** libs build 22-Jan-2020 15:15:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base64.c -o base64.o build 22-Jan-2020 15:15:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_array.c -o collapse_array.o build 22-Jan-2020 15:15:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_object.c -o collapse_object.o build 22-Jan-2020 15:15:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_pretty.c -o collapse_pretty.o build 22-Jan-2020 15:15:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c escape_chars.c -o escape_chars.o build 22-Jan-2020 15:15:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c integer64_to_na.c -o integer64_to_na.o build 22-Jan-2020 15:15:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_datelist.c -o is_datelist.o build 22-Jan-2020 15:15:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_recordlist.c -o is_recordlist.o build 22-Jan-2020 15:15:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_scalarlist.c -o is_scalarlist.o build 22-Jan-2020 15:15:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c modp_numtoa.c -o modp_numtoa.o build 22-Jan-2020 15:15:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c null_to_na.c -o null_to_na.o build 22-Jan-2020 15:15:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c num_to_char.c -o num_to_char.o build 22-Jan-2020 15:15:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c parse.c -o parse.o build 22-Jan-2020 15:15:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c prettify.c -o prettify.o build 22-Jan-2020 15:15:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c push_parser.c -o push_parser.o build 22-Jan-2020 15:15:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c r-base64.c -o r-base64.o build 22-Jan-2020 15:15:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c register.c -o register.o build 22-Jan-2020 15:15:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c row_collapse.c -o row_collapse.o build 22-Jan-2020 15:15:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transpose_list.c -o transpose_list.o build 22-Jan-2020 15:15:44 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c validate.c -o validate.o build 22-Jan-2020 15:15:44 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl.c -o yajl/yajl.o build 22-Jan-2020 15:15:44 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o build 22-Jan-2020 15:15:44 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_buf.c -o yajl/yajl_buf.o build 22-Jan-2020 15:15:44 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_encode.c -o yajl/yajl_encode.o build 22-Jan-2020 15:15:44 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_gen.c -o yajl/yajl_gen.o build 22-Jan-2020 15:15:44 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_lex.c -o yajl/yajl_lex.o build 22-Jan-2020 15:15:44 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_parser.c -o yajl/yajl_parser.o build 22-Jan-2020 15:15:44 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_tree.c -o yajl/yajl_tree.o build 22-Jan-2020 15:15:45 ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o build 22-Jan-2020 15:15:45 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/usr/lib/R/lib -lR build 22-Jan-2020 15:15:45 installing to /usr/local/lib/R/site-library/jsonlite/libs build 22-Jan-2020 15:15:45 ** R build 22-Jan-2020 15:15:45 ** inst build 22-Jan-2020 15:15:45 ** preparing package for lazy loading build 22-Jan-2020 15:15:45 ** help build 22-Jan-2020 15:15:45 *** installing help indices build 22-Jan-2020 15:15:45 ** building package indices build 22-Jan-2020 15:15:45 ** installing vignettes build 22-Jan-2020 15:15:45 ** testing if installed package can be loaded build 22-Jan-2020 15:15:45 * DONE (jsonlite) build 22-Jan-2020 15:15:45  build 22-Jan-2020 15:15:45 The downloaded source packages are in build 22-Jan-2020 15:15:45 '/tmp/RtmpJJtGEI/downloaded_packages' build 22-Jan-2020 15:15:45 [1] "/usr/local/lib/R/site-library/jsonlite" build 22-Jan-2020 15:15:51 Removing intermediate container bd3eea1f7929 build 22-Jan-2020 15:15:51 ---> 31028afd0937 build 22-Jan-2020 15:15:51 Step 5/11 : COPY r_extractor.py launcher.R /home/clowder/ build 22-Jan-2020 15:15:52 ---> 9689e73e8a39 build 22-Jan-2020 15:15:52 Step 6/11 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 22-Jan-2020 15:15:52 ---> Running in 0bd37488e74f build 22-Jan-2020 15:15:52 Removing intermediate container 0bd37488e74f build 22-Jan-2020 15:15:52 ---> b0e42e7d2a78 build 22-Jan-2020 15:15:52 Step 7/11 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 22-Jan-2020 15:15:53 ---> Running in 42e049c579ad build 22-Jan-2020 15:15:53 Removing intermediate container 42e049c579ad build 22-Jan-2020 15:15:53 ---> f9ecab50f742 build 22-Jan-2020 15:15:53 Step 8/11 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ build 22-Jan-2020 15:15:53 ---> Running in baccce9b406d build 22-Jan-2020 15:15:54 Removing intermediate container baccce9b406d build 22-Jan-2020 15:15:54 ---> 598ccd86d24a build 22-Jan-2020 15:15:54 Step 9/11 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi build 22-Jan-2020 15:15:54 ---> Running in c6c7defb7228 build 22-Jan-2020 15:15:55 Removing intermediate container c6c7defb7228 build 22-Jan-2020 15:15:55 ---> 4360e5ca6d94 build 22-Jan-2020 15:15:55 Step 10/11 : ONBUILD ADD . /home/clowder/ build 22-Jan-2020 15:15:55 ---> Running in 8898e9e8cc08 build 22-Jan-2020 15:15:55 Removing intermediate container 8898e9e8cc08 build 22-Jan-2020 15:15:55 ---> 40b24dca96f0 build 22-Jan-2020 15:15:55 Step 11/11 : CMD python r_extractor.py build 22-Jan-2020 15:15:55 ---> Running in 4edd0a4e7982 build 22-Jan-2020 15:15:56 Removing intermediate container 4edd0a4e7982 build 22-Jan-2020 15:15:56 ---> a745d44fdf0a build 22-Jan-2020 15:15:56 Successfully built a745d44fdf0a build 22-Jan-2020 15:15:56 Successfully tagged clowder/extractors-simple-r-extractor:onbuild build 22-Jan-2020 15:15:56 Sending build context to Docker daemon 260.1kB build 22-Jan-2020 15:15:56 build 22-Jan-2020 15:15:56 Step 1/10 : FROM ubuntu:16.04 build 22-Jan-2020 15:15:56 ---> 96da9143fb18 build 22-Jan-2020 15:15:56 Step 2/10 : ARG PYTHON_VERSION="2.7" build 22-Jan-2020 15:15:56 ---> Using cache build 22-Jan-2020 15:15:56 ---> ff39708511b1 build 22-Jan-2020 15:15:56 Step 3/10 : ENV PYTHON_VERSION=${PYTHON_VERSION} RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" build 22-Jan-2020 15:15:56 ---> Using cache build 22-Jan-2020 15:15:56 ---> a6c83aa2d5b3 build 22-Jan-2020 15:15:56 Step 4/10 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python${PYTHON_VERSION} curl && if [ ! -e /usr/bin/python ]; then ln -s /usr/bin/python${PYTHON_VERSION} /usr/bin/python; fi && curl -k https://bootstrap.pypa.io/get-pip.py -o /tmp/get-pip.py && python /tmp/get-pip.py && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* /tmp/get-pip.py build 22-Jan-2020 15:15:56 ---> Using cache build 22-Jan-2020 15:15:56 ---> 68fd1dd1e2a8 build 22-Jan-2020 15:15:56 Step 5/10 : COPY pyclowder /tmp/pyclowder/pyclowder build 22-Jan-2020 15:15:56 ---> 653ae90decfd build 22-Jan-2020 15:15:56 Step 6/10 : COPY setup.py description.rst /tmp/pyclowder/ build 22-Jan-2020 15:15:57 ---> 1796f752dc7a build 22-Jan-2020 15:15:57 Step 7/10 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder build 22-Jan-2020 15:15:57 ---> Running in 8bfeb821c249 build 22-Jan-2020 15:15:58 Processing /tmp/pyclowder build 22-Jan-2020 15:15:58 Collecting enum34==1.1.6 build 22-Jan-2020 15:15:58 Downloading enum34-1.1.6-py3-none-any.whl (12 kB) build 22-Jan-2020 15:15:59 Collecting pika==1.0.0 build 22-Jan-2020 15:15:59 Downloading pika-1.0.0-py2.py3-none-any.whl (148 kB) build 22-Jan-2020 15:15:59 Collecting PyYAML==5.1 build 22-Jan-2020 15:15:59 Downloading PyYAML-5.1.tar.gz (274 kB) build 22-Jan-2020 15:15:59 Collecting requests==2.21.0 build 22-Jan-2020 15:15:59 Downloading requests-2.21.0-py2.py3-none-any.whl (57 kB) build 22-Jan-2020 15:16:00 Collecting requests-toolbelt==0.9.1 build 22-Jan-2020 15:16:00 Downloading requests_toolbelt-0.9.1-py2.py3-none-any.whl (54 kB) build 22-Jan-2020 15:16:00 Collecting urllib3<1.25,>=1.21.1 build 22-Jan-2020 15:16:00 Downloading urllib3-1.24.3-py2.py3-none-any.whl (118 kB) build 22-Jan-2020 15:16:00 Collecting idna<2.9,>=2.5 build 22-Jan-2020 15:16:00 Downloading idna-2.8-py2.py3-none-any.whl (58 kB) build 22-Jan-2020 15:16:00 Collecting chardet<3.1.0,>=3.0.2 build 22-Jan-2020 15:16:00 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) build 22-Jan-2020 15:16:00 Collecting certifi>=2017.4.17 build 22-Jan-2020 15:16:00 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) build 22-Jan-2020 15:16:00 Building wheels for collected packages: pyclowder, PyYAML build 22-Jan-2020 15:16:00 Building wheel for pyclowder (setup.py): started build 22-Jan-2020 15:16:01 Building wheel for pyclowder (setup.py): finished with status 'done' build 22-Jan-2020 15:16:01 Created wheel for pyclowder: filename=pyclowder-2.2.3-py3-none-any.whl size=31523 sha256=601f657ed53a002294d3231a589afcedb5f5c9ebca35e972319e46d9d4838d92 build 22-Jan-2020 15:16:01 Stored in directory: /tmp/pip-ephem-wheel-cache-1ut3024n/wheels/43/1a/b9/bee165c839530283e160bc612f8950df55db3878ccd703dcbc build 22-Jan-2020 15:16:01 Building wheel for PyYAML (setup.py): started build 22-Jan-2020 15:16:01 Building wheel for PyYAML (setup.py): finished with status 'done' build 22-Jan-2020 15:16:01 Created wheel for PyYAML: filename=PyYAML-5.1-cp35-cp35m-linux_x86_64.whl size=44076 sha256=5b503ec30a4f44c9fafe28d67fbd49a49ffeeb744a3edc88499d0e37b4db591c build 22-Jan-2020 15:16:01 Stored in directory: /root/.cache/pip/wheels/b2/78/74/04cc17bc132e5f16411a457e6e61b54dc06916bdd604396c57 build 22-Jan-2020 15:16:01 Successfully built pyclowder PyYAML build 22-Jan-2020 15:16:01 Installing collected packages: enum34, pika, PyYAML, urllib3, idna, chardet, certifi, requests, requests-toolbelt, pyclowder build 22-Jan-2020 15:16:02 Successfully installed PyYAML-5.1 certifi-2019.11.28 chardet-3.0.4 enum34-1.1.6 idna-2.8 pika-1.0.0 pyclowder-2.2.3 requests-2.21.0 requests-toolbelt-0.9.1 urllib3-1.24.3 build 22-Jan-2020 15:16:03 Removing intermediate container 8bfeb821c249 build 22-Jan-2020 15:16:03 ---> 4305402bf9bb build 22-Jan-2020 15:16:03 Step 8/10 : WORKDIR /home/clowder build 22-Jan-2020 15:16:04 ---> Running in 8bea9c292b96 build 22-Jan-2020 15:16:04 Removing intermediate container 8bea9c292b96 build 22-Jan-2020 15:16:04 ---> 4f2040c15258 build 22-Jan-2020 15:16:04 Step 9/10 : COPY notifications.json /home/clowder/ build 22-Jan-2020 15:16:04 ---> 0c4792bb5865 build 22-Jan-2020 15:16:04 Step 10/10 : CMD python "./${MAIN_SCRIPT}" build 22-Jan-2020 15:16:05 ---> Running in 2b116bceec50 build 22-Jan-2020 15:16:05 Removing intermediate container 2b116bceec50 build 22-Jan-2020 15:16:05 ---> eb916285b69f build 22-Jan-2020 15:16:05 Successfully built eb916285b69f build 22-Jan-2020 15:16:05 Successfully tagged clowder/pyclowder-python3:latest build 22-Jan-2020 15:16:05 Sending build context to Docker daemon 258kB build 22-Jan-2020 15:16:05 build 22-Jan-2020 15:16:05 Step 1/7 : ARG PYCLOWDER_PYTHON="" build 22-Jan-2020 15:16:05 Step 2/7 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest build 22-Jan-2020 15:16:05 ---> eb916285b69f build 22-Jan-2020 15:16:05 Step 3/7 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 22-Jan-2020 15:16:05 ---> Running in 093c266bfbb0 build 22-Jan-2020 15:16:06 Removing intermediate container 093c266bfbb0 build 22-Jan-2020 15:16:06 ---> b91289c7de19 build 22-Jan-2020 15:16:06 Step 4/7 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 22-Jan-2020 15:16:06 ---> Running in e7e452ec4ec1 build 22-Jan-2020 15:16:06 Removing intermediate container e7e452ec4ec1 build 22-Jan-2020 15:16:06 ---> fa43d33cbcb4 build 22-Jan-2020 15:16:06 Step 5/7 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 22-Jan-2020 15:16:06 ---> Running in 3e6c9a3dc79b build 22-Jan-2020 15:16:07 Removing intermediate container 3e6c9a3dc79b build 22-Jan-2020 15:16:07 ---> f86b81fb12a0 build 22-Jan-2020 15:16:07 Step 6/7 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 22-Jan-2020 15:16:07 ---> Running in 193b19b25948 build 22-Jan-2020 15:16:07 Removing intermediate container 193b19b25948 build 22-Jan-2020 15:16:07 ---> d362de77a3b5 build 22-Jan-2020 15:16:07 Step 7/7 : ONBUILD ADD . /home/clowder/ build 22-Jan-2020 15:16:07 ---> Running in 6b370f90d54e build 22-Jan-2020 15:16:08 Removing intermediate container 6b370f90d54e build 22-Jan-2020 15:16:08 ---> fe1f5752762d build 22-Jan-2020 15:16:08 Successfully built fe1f5752762d build 22-Jan-2020 15:16:08 Successfully tagged clowder/pyclowder-python3:onbuild build 22-Jan-2020 15:16:08 Sending build context to Docker daemon 12.8kB build 22-Jan-2020 15:16:08 build 22-Jan-2020 15:16:08 Step 1/6 : ARG PYCLOWDER_PYTHON="" build 22-Jan-2020 15:16:08 Step 2/6 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:onbuild build 22-Jan-2020 15:16:08 # Executing 5 build triggers build 22-Jan-2020 15:16:09 ---> Running in 0cc35c32cacf build 22-Jan-2020 15:16:11 Removing intermediate container 0cc35c32cacf build 22-Jan-2020 15:16:12 ---> Running in ef20b57c5052 build 22-Jan-2020 15:16:13 Removing intermediate container ef20b57c5052 build 22-Jan-2020 15:16:13 ---> 160608c3f4a6 build 22-Jan-2020 15:16:13 Step 3/6 : ENV MAIN_SCRIPT="binary_extractor.py" RABBITMQ_QUEUE="" IMAGE_BINARY="" IMAGE_TYPE="" IMAGE_THUMBNAIL_COMMAND="" IMAGE_PREVIEW_COMMAND="" PREVIEW_BINARY="" PREVIEW_TYPE="" PREVIEW_COMMAND="" build 22-Jan-2020 15:16:14 ---> Running in b070fbabd074 build 22-Jan-2020 15:16:14 Removing intermediate container b070fbabd074 build 22-Jan-2020 15:16:14 ---> 00d63b658c4c build 22-Jan-2020 15:16:14 Step 4/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 22-Jan-2020 15:16:14 ---> Running in d9398c07f3aa build 22-Jan-2020 15:16:14 Removing intermediate container d9398c07f3aa build 22-Jan-2020 15:16:14 ---> 4ac99356f400 build 22-Jan-2020 15:16:14 Step 5/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 22-Jan-2020 15:16:15 ---> Running in 4158ebe8c95f build 22-Jan-2020 15:16:15 Removing intermediate container 4158ebe8c95f build 22-Jan-2020 15:16:15 ---> bfe20b9f9734 build 22-Jan-2020 15:16:15 Step 6/6 : ONBUILD COPY extractor_info.json /home/clowder/ build 22-Jan-2020 15:16:16 ---> Running in fe8fbfd3c381 build 22-Jan-2020 15:16:16 Removing intermediate container fe8fbfd3c381 build 22-Jan-2020 15:16:16 ---> 8b4a38caabc1 build 22-Jan-2020 15:16:16 Successfully built 8b4a38caabc1 build 22-Jan-2020 15:16:16 Successfully tagged clowder/extractors-binary-preview-python3:onbuild build 22-Jan-2020 15:16:17 Sending build context to Docker daemon 6.656kB build 22-Jan-2020 15:16:17 build 22-Jan-2020 15:16:17 Step 1/11 : ARG PYCLOWDER_PYTHON="" build 22-Jan-2020 15:16:17 Step 2/11 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest build 22-Jan-2020 15:16:17 ---> eb916285b69f build 22-Jan-2020 15:16:17 Step 3/11 : ENV EXTRACTION_FUNC="" build 22-Jan-2020 15:16:17 ---> Running in ab9ff3c79ddf build 22-Jan-2020 15:16:17 Removing intermediate container ab9ff3c79ddf build 22-Jan-2020 15:16:17 ---> 819fd5039e13 build 22-Jan-2020 15:16:17 Step 4/11 : ENV EXTRACTION_MODULE="" build 22-Jan-2020 15:16:17 ---> Running in f0b8eb78cfe8 build 22-Jan-2020 15:16:20 Removing intermediate container f0b8eb78cfe8 build 22-Jan-2020 15:16:20 ---> f9e8b1c740c9 build 22-Jan-2020 15:16:20 Step 5/11 : COPY simple_extractor.py . build 22-Jan-2020 15:16:21 ---> c9331aa7c52c build 22-Jan-2020 15:16:21 Step 6/11 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 22-Jan-2020 15:16:21 ---> Running in 77a6840a5dc0 build 22-Jan-2020 15:16:22 Removing intermediate container 77a6840a5dc0 build 22-Jan-2020 15:16:22 ---> 0510b3c6d83e build 22-Jan-2020 15:16:22 Step 7/11 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 22-Jan-2020 15:16:22 ---> Running in 9e6782e388b4 build 22-Jan-2020 15:16:22 Removing intermediate container 9e6782e388b4 build 22-Jan-2020 15:16:22 ---> c4cb74f8c488 build 22-Jan-2020 15:16:22 Step 8/11 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 22-Jan-2020 15:16:22 ---> Running in b2403a2cda2c build 22-Jan-2020 15:16:23 Removing intermediate container b2403a2cda2c build 22-Jan-2020 15:16:23 ---> c9fa42827087 build 22-Jan-2020 15:16:23 Step 9/11 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 22-Jan-2020 15:16:23 ---> Running in 50843116fccf build 22-Jan-2020 15:16:23 Removing intermediate container 50843116fccf build 22-Jan-2020 15:16:23 ---> c79feec7bc9f build 22-Jan-2020 15:16:23 Step 10/11 : ONBUILD ADD . /home/clowder/ build 22-Jan-2020 15:16:23 ---> Running in 812e55794af5 build 22-Jan-2020 15:16:23 Removing intermediate container 812e55794af5 build 22-Jan-2020 15:16:23 ---> 8906974454d0 build 22-Jan-2020 15:16:23 Step 11/11 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" build 22-Jan-2020 15:16:24 ---> Running in dd5aaf6d3363 build 22-Jan-2020 15:16:24 Removing intermediate container dd5aaf6d3363 build 22-Jan-2020 15:16:24 ---> be38e2265380 build 22-Jan-2020 15:16:24 Successfully built be38e2265380 build 22-Jan-2020 15:16:24 Successfully tagged clowder/extractors-simple-extractor-python3:onbuild build 22-Jan-2020 15:16:25 Sending build context to Docker daemon 13.31kB build 22-Jan-2020 15:16:25 build 22-Jan-2020 15:16:25 Step 1/11 : ARG PYCLOWDER_PYTHON="" build 22-Jan-2020 15:16:25 Step 2/11 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest build 22-Jan-2020 15:16:25 ---> eb916285b69f build 22-Jan-2020 15:16:25 Step 3/11 : ENV R_SCRIPT="" R_FUNCTION="" build 22-Jan-2020 15:16:25 ---> Running in 8140cc3a1c0c build 22-Jan-2020 15:16:26 Removing intermediate container 8140cc3a1c0c build 22-Jan-2020 15:16:26 ---> 05fffb51f81c build 22-Jan-2020 15:16:26 Step 4/11 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" build 22-Jan-2020 15:16:26 ---> Running in f1e6f9cd3f75 build 22-Jan-2020 15:16:27 Executing: /tmp/tmp.6Ve0Pp9yoT/gpg.1.sh --keyserver build 22-Jan-2020 15:16:27 keyserver.ubuntu.com build 22-Jan-2020 15:16:27 --recv-keys build 22-Jan-2020 15:16:27 E298A3A825C0D65DFD57CBB651716619E084DAB9 build 22-Jan-2020 15:16:27 gpg: requesting key E084DAB9 from hkp server keyserver.ubuntu.com build 22-Jan-2020 15:16:27 gpg: key E084DAB9: public key "Michael Rutter " imported build 22-Jan-2020 15:16:27 gpg: Total number processed: 1 build 22-Jan-2020 15:16:27 gpg: imported: 1 (RSA: 1) build 22-Jan-2020 15:16:32 Reading package lists... build 22-Jan-2020 15:16:32 Building dependency tree... build 22-Jan-2020 15:16:32 Reading state information... build 22-Jan-2020 15:16:32 The following additional packages will be installed: build 22-Jan-2020 15:16:32 autoconf automake autotools-dev binutils bsdmainutils build-essential bzip2 build 22-Jan-2020 15:16:32 ca-certificates cdbs cpp cpp-5 debhelper dh-strip-nondeterminism build 22-Jan-2020 15:16:32 dh-translations dpkg-dev file fontconfig fontconfig-config fonts-dejavu-core build 22-Jan-2020 15:16:32 g++ g++-5 gcc gcc-5 gettext gettext-base gfortran gfortran-5 groff-base build 22-Jan-2020 15:16:32 icu-devtools intltool intltool-debian libarchive-zip-perl libasan2 build 22-Jan-2020 15:16:32 libasprintf0v5 libatomic1 libblas-common libblas-dev libblas3 libbz2-dev build 22-Jan-2020 15:16:32 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcroco3 libcurl3 build 22-Jan-2020 15:16:32 libdatrie1 libdpkg-perl libencode-locale-perl libfile-listing-perl build 22-Jan-2020 15:16:32 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-5-dev build 22-Jan-2020 15:16:32 libgdbm3 libgfortran-5-dev libgfortran3 libglib2.0-0 libgomp1 libgraphite2-3 build 22-Jan-2020 15:16:32 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl build 22-Jan-2020 15:16:32 libhttp-cookies-perl libhttp-date-perl libhttp-message-perl build 22-Jan-2020 15:16:32 libhttp-negotiate-perl libice6 libicu-dev libicu55 libio-html-perl build 22-Jan-2020 15:16:32 libio-socket-ssl-perl libisl15 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 build 22-Jan-2020 15:16:32 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblsan0 build 22-Jan-2020 15:16:32 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic1 build 22-Jan-2020 15:16:32 libmpc3 libmpfr4 libmpx0 libncurses5-dev libnet-http-perl libnet-ssleay-perl build 22-Jan-2020 15:16:32 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils build 22-Jan-2020 15:16:32 libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.22 build 22-Jan-2020 15:16:32 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libpython-stdlib build 22-Jan-2020 15:16:32 libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline-dev build 22-Jan-2020 15:16:32 libreadline6-dev libsigsegv2 libsm6 libstdc++-5-dev libtcl8.6 libthai-data build 22-Jan-2020 15:16:32 libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libtsan0 libubsan0 build 22-Jan-2020 15:16:32 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 build 22-Jan-2020 15:16:32 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 build 22-Jan-2020 15:16:32 libxft2 libxml-parser-perl libxml2 libxmuu1 libxrender1 libxss1 libxt6 build 22-Jan-2020 15:16:32 linux-libc-dev m4 make man-db netbase openssl patch perl perl-modules-5.22 build 22-Jan-2020 15:16:32 pkg-config po-debconf python python-minimal python-pkg-resources build 22-Jan-2020 15:16:32 python-scour python-six python2.7 python2.7-minimal tzdata ucf unzip build 22-Jan-2020 15:16:32 x11-common xauth xdg-utils xz-utils zip zlib1g zlib1g-dev build 22-Jan-2020 15:16:32 Suggested packages: build 22-Jan-2020 15:16:32 autoconf-archive gnu-standards autoconf-doc libtool binutils-doc wamerican build 22-Jan-2020 15:16:32 | wordlist whois vacation bzip2-doc devscripts cpp-doc gcc-5-locales dh-make build 22-Jan-2020 15:16:32 debian-keyring g++-multilib g++-5-multilib gcc-5-doc libstdc++6-5-dbg build 22-Jan-2020 15:16:32 gcc-multilib manpages-dev flex bison gdb gcc-doc gcc-5-multilib libgcc1-dbg build 22-Jan-2020 15:16:32 libgomp1-dbg libitm1-dbg libatomic1-dbg libasan2-dbg liblsan0-dbg build 22-Jan-2020 15:16:32 libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx0-dbg libquadmath0-dbg build 22-Jan-2020 15:16:32 gettext-doc autopoint gfortran-multilib gfortran-doc gfortran-5-multilib build 22-Jan-2020 15:16:32 gfortran-5-doc libgfortran3-dbg groff liblapack-doc-man liblapack-doc build 22-Jan-2020 15:16:32 glibc-doc libdata-dump-perl icu-doc libcrypt-ssleay-perl liblzma-doc build 22-Jan-2020 15:16:32 ncurses-doc readline-doc libstdc++-5-doc tcl8.6 tk8.6 libauthen-ntlm-perl build 22-Jan-2020 15:16:32 make-doc less www-browser ed diffutils-doc perl-doc build 22-Jan-2020 15:16:32 libterm-readline-gnu-perl | libterm-readline-perl-perl libmail-box-perl build 22-Jan-2020 15:16:32 python-doc python-tk python-setuptools python-rsvg python-cairo build 22-Jan-2020 15:16:32 python2.7-doc binfmt-support ess r-doc-info | r-doc-pdf r-mathlib build 22-Jan-2020 15:16:32 r-base-html texlive-base texlive-latex-base texlive-generic-recommended build 22-Jan-2020 15:16:32 texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils build 22-Jan-2020 15:16:32 texlive-latex-recommended texlive-latex-extra texinfo gvfs-bin build 22-Jan-2020 15:16:32 Recommended packages: build 22-Jan-2020 15:16:32 fakeroot libalgorithm-merge-perl libasprintf-dev libgettextpo-dev bzip2-doc build 22-Jan-2020 15:16:32 manpages manpages-dev libfile-fcntllock-perl libglib2.0-data build 22-Jan-2020 15:16:32 shared-mime-info xdg-user-dirs libhtml-format-perl libhtml-form-perl build 22-Jan-2020 15:16:32 libhttp-daemon-perl libmailtools-perl xml-core ifupdown rename build 22-Jan-2020 15:16:32 libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl build 22-Jan-2020 15:16:32 libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils build 22-Jan-2020 15:16:32 The following NEW packages will be installed: build 22-Jan-2020 15:16:32 autoconf automake autotools-dev binutils bsdmainutils build-essential bzip2 build 22-Jan-2020 15:16:32 ca-certificates cdbs cpp cpp-5 debhelper dh-strip-nondeterminism build 22-Jan-2020 15:16:32 dh-translations dpkg-dev file fontconfig fontconfig-config fonts-dejavu-core build 22-Jan-2020 15:16:32 g++ g++-5 gcc gcc-5 gettext gettext-base gfortran gfortran-5 groff-base build 22-Jan-2020 15:16:32 icu-devtools intltool intltool-debian libarchive-zip-perl libasan2 build 22-Jan-2020 15:16:32 libasprintf0v5 libatomic1 libblas-common libblas-dev libblas3 libbz2-dev build 22-Jan-2020 15:16:32 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcroco3 libcurl3 build 22-Jan-2020 15:16:32 libdatrie1 libdpkg-perl libencode-locale-perl libfile-listing-perl build 22-Jan-2020 15:16:32 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-5-dev build 22-Jan-2020 15:16:32 libgdbm3 libgfortran-5-dev libgfortran3 libglib2.0-0 libgomp1 libgraphite2-3 build 22-Jan-2020 15:16:32 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl build 22-Jan-2020 15:16:32 libhttp-cookies-perl libhttp-date-perl libhttp-message-perl build 22-Jan-2020 15:16:32 libhttp-negotiate-perl libice6 libicu-dev libicu55 libio-html-perl build 22-Jan-2020 15:16:32 libio-socket-ssl-perl libisl15 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 build 22-Jan-2020 15:16:32 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblsan0 build 22-Jan-2020 15:16:32 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic1 build 22-Jan-2020 15:16:32 libmpc3 libmpfr4 libmpx0 libncurses5-dev libnet-http-perl libnet-ssleay-perl build 22-Jan-2020 15:16:32 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils build 22-Jan-2020 15:16:32 libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.22 build 22-Jan-2020 15:16:32 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libpython-stdlib build 22-Jan-2020 15:16:32 libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline-dev build 22-Jan-2020 15:16:32 libreadline6-dev libsigsegv2 libsm6 libstdc++-5-dev libtcl8.6 libthai-data build 22-Jan-2020 15:16:32 libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libtsan0 libubsan0 build 22-Jan-2020 15:16:32 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 build 22-Jan-2020 15:16:32 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 build 22-Jan-2020 15:16:32 libxft2 libxml-parser-perl libxml2 libxmuu1 libxrender1 libxss1 libxt6 build 22-Jan-2020 15:16:32 linux-libc-dev m4 make man-db netbase openssl patch perl perl-modules-5.22 build 22-Jan-2020 15:16:32 pkg-config po-debconf python python-minimal python-pkg-resources build 22-Jan-2020 15:16:32 python-scour python-six python2.7 python2.7-minimal r-base-core r-base-dev build 22-Jan-2020 15:16:32 tzdata ucf unzip x11-common xauth xdg-utils xz-utils zip zlib1g-dev build 22-Jan-2020 15:16:32 The following packages will be upgraded: build 22-Jan-2020 15:16:32 zlib1g build 22-Jan-2020 15:16:32 1 upgraded, 174 newly installed, 0 to remove and 0 not upgraded. build 22-Jan-2020 15:16:32 Need to get 119 MB of archives. build 22-Jan-2020 15:16:32 After this operation, 424 MB of additional disk space will be used. build 22-Jan-2020 15:16:32 Get:1 http://cran.rstudio.com/bin/linux/ubuntu xenial/ r-base-core 3.4.4-1xenial0 [23.2 MB] build 22-Jan-2020 15:16:32 Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgdbm3 amd64 1.8.3-13.1 [16.9 kB] build 22-Jan-2020 15:16:33 Get:3 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 zlib1g amd64 1:1.2.8.dfsg-2ubuntu4.3 [51.2 kB] build 22-Jan-2020 15:16:33 Get:4 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libglib2.0-0 amd64 2.48.2-0ubuntu4.4 [1120 kB] build 22-Jan-2020 15:16:33 Get:5 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] build 22-Jan-2020 15:16:33 Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxdmcp6 amd64 1:1.1.2-1.1 [11.0 kB] build 22-Jan-2020 15:16:33 Get:7 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb1 amd64 1.11.1-1ubuntu1 [40.0 kB] build 22-Jan-2020 15:16:33 Get:8 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-data all 2:1.6.3-1ubuntu2.1 [113 kB] build 22-Jan-2020 15:16:33 Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-6 amd64 2:1.6.3-1ubuntu2.1 [570 kB] build 22-Jan-2020 15:16:33 Get:10 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB] build 22-Jan-2020 15:16:33 Get:11 http://archive.ubuntu.com/ubuntu xenial/main amd64 groff-base amd64 1.22.3-7 [1151 kB] build 22-Jan-2020 15:16:33 Get:12 http://archive.ubuntu.com/ubuntu xenial/main amd64 bsdmainutils amd64 9.0.6ubuntu3 [174 kB] build 22-Jan-2020 15:16:33 Get:13 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpipeline1 amd64 1.4.1-2 [24.6 kB] build 22-Jan-2020 15:16:33 Get:14 http://archive.ubuntu.com/ubuntu xenial/main amd64 man-db amd64 2.7.5-1 [854 kB] build 22-Jan-2020 15:16:33 Get:15 http://cran.rstudio.com/bin/linux/ubuntu xenial/ r-base-dev 3.4.4-1xenial0 [4416 B] build 22-Jan-2020 15:16:33 Get:16 http://archive.ubuntu.com/ubuntu xenial/main amd64 fonts-dejavu-core all 2.35-1 [1039 kB] build 22-Jan-2020 15:16:33 Get:17 http://archive.ubuntu.com/ubuntu xenial/main amd64 ucf all 3.0036 [52.9 kB] build 22-Jan-2020 15:16:33 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 fontconfig-config all 2.11.94-0ubuntu1.1 [49.9 kB] build 22-Jan-2020 15:16:33 Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpng12-0 amd64 1.2.54-1ubuntu1.1 [116 kB] build 22-Jan-2020 15:16:33 Get:20 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfreetype6 amd64 2.6.1-0.1ubuntu2.4 [315 kB] build 22-Jan-2020 15:16:33 Get:21 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfontconfig1 amd64 2.11.94-0ubuntu1.1 [131 kB] build 22-Jan-2020 15:16:33 Get:22 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 fontconfig amd64 2.11.94-0ubuntu1.1 [178 kB] build 22-Jan-2020 15:16:33 Get:23 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 x11-common all 1:7.7+13ubuntu3.1 [22.9 kB] build 22-Jan-2020 15:16:34 Get:24 http://archive.ubuntu.com/ubuntu xenial/main amd64 libice6 amd64 2:1.0.9-1 [39.2 kB] build 22-Jan-2020 15:16:34 Get:25 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libjpeg-turbo8 amd64 1.4.2-0ubuntu3.3 [111 kB] build 22-Jan-2020 15:16:34 Get:26 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpcrecpp0v5 amd64 2:8.38-3.1 [15.2 kB] build 22-Jan-2020 15:16:34 Get:27 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsigsegv2 amd64 2.10-4 [14.1 kB] build 22-Jan-2020 15:16:34 Get:28 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB] build 22-Jan-2020 15:16:34 Get:29 http://archive.ubuntu.com/ubuntu xenial/main amd64 libunistring0 amd64 0.9.3-5.2ubuntu1 [279 kB] build 22-Jan-2020 15:16:34 Get:30 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxrender1 amd64 1:0.9.9-0ubuntu1 [18.5 kB] build 22-Jan-2020 15:16:34 Get:31 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxft2 amd64 2.3.2-1 [36.1 kB] build 22-Jan-2020 15:16:34 Get:32 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxss1 amd64 1:1.2.2-1 [8582 B] build 22-Jan-2020 15:16:34 Get:33 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 perl-modules-5.22 all 5.22.1-9ubuntu0.6 [2629 kB] build 22-Jan-2020 15:16:34 Get:34 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libperl5.22 amd64 5.22.1-9ubuntu0.6 [3405 kB] build 22-Jan-2020 15:16:35 Get:35 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 perl amd64 5.22.1-9ubuntu0.6 [237 kB] build 22-Jan-2020 15:16:35 Get:36 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-minimal amd64 2.7.12-1ubuntu0~16.04.9 [338 kB] build 22-Jan-2020 15:16:35 Get:37 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7-minimal amd64 2.7.12-1ubuntu0~16.04.9 [1262 kB] build 22-Jan-2020 15:16:35 Get:38 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-minimal amd64 2.7.12-1~16.04 [28.1 kB] build 22-Jan-2020 15:16:35 Get:39 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-stdlib amd64 2.7.12-1ubuntu0~16.04.9 [1884 kB] build 22-Jan-2020 15:16:35 Get:40 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7 amd64 2.7.12-1ubuntu0~16.04.9 [224 kB] build 22-Jan-2020 15:16:35 Get:41 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython-stdlib amd64 2.7.12-1~16.04 [7768 B] build 22-Jan-2020 15:16:35 Get:42 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python amd64 2.7.12-1~16.04 [137 kB] build 22-Jan-2020 15:16:35 Get:43 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjbig0 amd64 2.1-3.1 [26.6 kB] build 22-Jan-2020 15:16:35 Get:44 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpfr4 amd64 3.1.4-1 [191 kB] build 22-Jan-2020 15:16:35 Get:45 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpc3 amd64 1.0.3-1 [39.7 kB] build 22-Jan-2020 15:16:35 Get:46 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 tzdata all 2019c-0ubuntu0.16.04 [168 kB] build 22-Jan-2020 15:16:35 Get:47 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 bzip2 amd64 1.0.6-8ubuntu0.2 [32.5 kB] build 22-Jan-2020 15:16:35 Get:48 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmagic1 amd64 1:5.25-2ubuntu1.3 [216 kB] build 22-Jan-2020 15:16:35 Get:49 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 file amd64 1:5.25-2ubuntu1.3 [21.3 kB] build 22-Jan-2020 15:16:35 Get:50 http://archive.ubuntu.com/ubuntu xenial/main amd64 netbase all 5.3 [12.9 kB] build 22-Jan-2020 15:16:35 Get:51 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 openssl amd64 1.0.2g-1ubuntu4.15 [492 kB] build 22-Jan-2020 15:16:35 Get:52 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 ca-certificates all 20170717~16.04.2 [167 kB] build 22-Jan-2020 15:16:36 Get:53 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasprintf0v5 amd64 0.19.7-2ubuntu3.1 [6568 B] build 22-Jan-2020 15:16:36 Get:54 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gettext-base amd64 0.19.7-2ubuntu3.1 [48.0 kB] build 22-Jan-2020 15:16:36 Get:55 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libicu55 amd64 55.1-7ubuntu0.4 [7646 kB] build 22-Jan-2020 15:16:36 Get:56 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libxml2 amd64 2.9.3+dfsg1-1ubuntu0.6 [697 kB] build 22-Jan-2020 15:16:36 Get:57 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxmuu1 amd64 2:1.1.2-2 [9674 B] build 22-Jan-2020 15:16:36 Get:58 http://archive.ubuntu.com/ubuntu xenial/main amd64 xauth amd64 1:1.0.9-1ubuntu2 [22.7 kB] build 22-Jan-2020 15:16:36 Get:59 http://archive.ubuntu.com/ubuntu xenial/main amd64 m4 amd64 1.4.17-5 [195 kB] build 22-Jan-2020 15:16:36 Get:60 http://archive.ubuntu.com/ubuntu xenial/main amd64 autoconf all 2.69-9 [321 kB] build 22-Jan-2020 15:16:36 Get:61 http://archive.ubuntu.com/ubuntu xenial/main amd64 autotools-dev all 20150820.1 [39.8 kB] build 22-Jan-2020 15:16:36 Get:62 http://archive.ubuntu.com/ubuntu xenial/main amd64 automake all 1:1.15-4ubuntu1 [510 kB] build 22-Jan-2020 15:16:36 Get:63 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 binutils amd64 2.26.1-1ubuntu1~16.04.8 [2312 kB] build 22-Jan-2020 15:16:36 Get:64 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc-dev-bin amd64 2.23-0ubuntu11 [68.5 kB] build 22-Jan-2020 15:16:36 Get:65 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 linux-libc-dev amd64 4.4.0-171.200 [844 kB] build 22-Jan-2020 15:16:36 Get:66 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc6-dev amd64 2.23-0ubuntu11 [2086 kB] build 22-Jan-2020 15:16:37 Get:67 http://archive.ubuntu.com/ubuntu xenial/main amd64 libisl15 amd64 0.16.1-1 [524 kB] build 22-Jan-2020 15:16:37 Get:68 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 cpp-5 amd64 5.4.0-6ubuntu1~16.04.12 [7783 kB] build 22-Jan-2020 15:16:37 Get:69 http://archive.ubuntu.com/ubuntu xenial/main amd64 cpp amd64 4:5.3.1-1ubuntu1 [27.7 kB] build 22-Jan-2020 15:16:37 Get:70 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcc1-0 amd64 5.4.0-6ubuntu1~16.04.12 [38.8 kB] build 22-Jan-2020 15:16:37 Get:71 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgomp1 amd64 5.4.0-6ubuntu1~16.04.12 [55.2 kB] build 22-Jan-2020 15:16:37 Get:72 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libitm1 amd64 5.4.0-6ubuntu1~16.04.12 [27.4 kB] build 22-Jan-2020 15:16:37 Get:73 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libatomic1 amd64 5.4.0-6ubuntu1~16.04.12 [8892 B] build 22-Jan-2020 15:16:37 Get:74 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasan2 amd64 5.4.0-6ubuntu1~16.04.12 [265 kB] build 22-Jan-2020 15:16:37 Get:75 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 liblsan0 amd64 5.4.0-6ubuntu1~16.04.12 [105 kB] build 22-Jan-2020 15:16:37 Get:76 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtsan0 amd64 5.4.0-6ubuntu1~16.04.12 [244 kB] build 22-Jan-2020 15:16:37 Get:77 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libubsan0 amd64 5.4.0-6ubuntu1~16.04.12 [95.3 kB] build 22-Jan-2020 15:16:37 Get:78 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcilkrts5 amd64 5.4.0-6ubuntu1~16.04.12 [40.0 kB] build 22-Jan-2020 15:16:37 Get:79 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmpx0 amd64 5.4.0-6ubuntu1~16.04.12 [9762 B] build 22-Jan-2020 15:16:37 Get:80 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libquadmath0 amd64 5.4.0-6ubuntu1~16.04.12 [131 kB] build 22-Jan-2020 15:16:37 Get:81 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgcc-5-dev amd64 5.4.0-6ubuntu1~16.04.12 [2239 kB] build 22-Jan-2020 15:16:37 Get:82 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gcc-5 amd64 5.4.0-6ubuntu1~16.04.12 [8612 kB] build 22-Jan-2020 15:16:38 Get:83 http://archive.ubuntu.com/ubuntu xenial/main amd64 gcc amd64 4:5.3.1-1ubuntu1 [5244 B] build 22-Jan-2020 15:16:38 Get:84 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libstdc++-5-dev amd64 5.4.0-6ubuntu1~16.04.12 [1428 kB] build 22-Jan-2020 15:16:38 Get:85 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 g++-5 amd64 5.4.0-6ubuntu1~16.04.12 [8430 kB] build 22-Jan-2020 15:16:38 Get:86 http://archive.ubuntu.com/ubuntu xenial/main amd64 g++ amd64 4:5.3.1-1ubuntu1 [1504 B] build 22-Jan-2020 15:16:38 Get:87 http://archive.ubuntu.com/ubuntu xenial/main amd64 make amd64 4.1-6 [151 kB] build 22-Jan-2020 15:16:39 Get:88 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdpkg-perl all 1.18.4ubuntu1.6 [195 kB] build 22-Jan-2020 15:16:39 Get:89 http://archive.ubuntu.com/ubuntu xenial/main amd64 xz-utils amd64 5.1.1alpha+20120614-2ubuntu2 [78.8 kB] build 22-Jan-2020 15:16:39 Get:90 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 patch amd64 2.7.5-1ubuntu0.16.04.2 [90.8 kB] build 22-Jan-2020 15:16:39 Get:91 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 dpkg-dev all 1.18.4ubuntu1.6 [584 kB] build 22-Jan-2020 15:16:39 Get:92 http://archive.ubuntu.com/ubuntu xenial/main amd64 build-essential amd64 12.1ubuntu2 [4758 B] build 22-Jan-2020 15:16:39 Get:93 http://archive.ubuntu.com/ubuntu xenial/main amd64 libcroco3 amd64 0.6.11-1 [81.6 kB] build 22-Jan-2020 15:16:39 Get:94 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gettext amd64 0.19.7-2ubuntu3.1 [1082 kB] build 22-Jan-2020 15:16:39 Get:95 http://archive.ubuntu.com/ubuntu xenial/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] build 22-Jan-2020 15:16:39 Get:96 http://archive.ubuntu.com/ubuntu xenial/main amd64 po-debconf all 1.0.19 [234 kB] build 22-Jan-2020 15:16:39 Get:97 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libarchive-zip-perl all 1.56-2ubuntu0.1 [84.7 kB] build 22-Jan-2020 15:16:39 Get:98 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfile-stripnondeterminism-perl all 0.015-1 [10.3 kB] build 22-Jan-2020 15:16:39 Get:99 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] build 22-Jan-2020 15:16:39 Get:100 http://archive.ubuntu.com/ubuntu xenial/main amd64 dh-strip-nondeterminism all 0.015-1 [4864 B] build 22-Jan-2020 15:16:39 Get:101 http://archive.ubuntu.com/ubuntu xenial/main amd64 debhelper all 9.20160115ubuntu3 [739 kB] build 22-Jan-2020 15:16:39 Get:102 http://archive.ubuntu.com/ubuntu xenial/main amd64 liburi-perl all 1.71-1 [76.9 kB] build 22-Jan-2020 15:16:39 Get:103 http://archive.ubuntu.com/ubuntu xenial/main amd64 libencode-locale-perl all 1.05-1 [12.3 kB] build 22-Jan-2020 15:16:39 Get:104 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-date-perl all 6.02-1 [10.4 kB] build 22-Jan-2020 15:16:39 Get:105 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfile-listing-perl all 6.04-1 [9774 B] build 22-Jan-2020 15:16:39 Get:106 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhtml-tagset-perl all 3.20-2 [13.5 kB] build 22-Jan-2020 15:16:39 Get:107 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhtml-parser-perl amd64 3.72-1 [86.1 kB] build 22-Jan-2020 15:16:39 Get:108 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhtml-tree-perl all 5.03-2 [197 kB] build 22-Jan-2020 15:16:40 Get:109 http://archive.ubuntu.com/ubuntu xenial/main amd64 libio-html-perl all 1.001-1 [14.9 kB] build 22-Jan-2020 15:16:40 Get:110 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblwp-mediatypes-perl all 6.02-1 [21.7 kB] build 22-Jan-2020 15:16:40 Get:111 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-message-perl all 6.11-1 [74.3 kB] build 22-Jan-2020 15:16:40 Get:112 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-cookies-perl all 6.01-1 [17.2 kB] build 22-Jan-2020 15:16:40 Get:113 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-negotiate-perl all 6.00-2 [13.4 kB] build 22-Jan-2020 15:16:40 Get:114 http://archive.ubuntu.com/ubuntu xenial/main amd64 libnet-ssleay-perl amd64 1.72-1build1 [259 kB] build 22-Jan-2020 15:16:40 Get:115 http://archive.ubuntu.com/ubuntu xenial/main amd64 libio-socket-ssl-perl all 2.024-1 [159 kB] build 22-Jan-2020 15:16:40 Get:116 http://archive.ubuntu.com/ubuntu xenial/main amd64 libnet-http-perl all 6.09-1 [24.0 kB] build 22-Jan-2020 15:16:40 Get:117 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblwp-protocol-https-perl all 6.06-2 [8682 B] build 22-Jan-2020 15:16:40 Get:118 http://archive.ubuntu.com/ubuntu xenial/main amd64 libwww-robotrules-perl all 6.01-1 [14.1 kB] build 22-Jan-2020 15:16:40 Get:119 http://archive.ubuntu.com/ubuntu xenial/main amd64 libwww-perl all 6.15-1 [146 kB] build 22-Jan-2020 15:16:40 Get:120 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxml-parser-perl amd64 2.44-1build1 [200 kB] build 22-Jan-2020 15:16:40 Get:121 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 intltool all 0.51.0-2ubuntu1.16.04.1 [45.0 kB] build 22-Jan-2020 15:16:40 Get:122 http://archive.ubuntu.com/ubuntu xenial/main amd64 dh-translations all 129 [22.1 kB] build 22-Jan-2020 15:16:40 Get:123 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-six all 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.../liblzma-dev_5.1.1alpha+20120614-2ubuntu2_amd64.deb ... build 22-Jan-2020 15:18:39 Unpacking liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... build 22-Jan-2020 15:18:40 Selecting previously unselected package r-base-dev. build 22-Jan-2020 15:18:40 Preparing to unpack .../r-base-dev_3.4.4-1xenial0_all.deb ... build 22-Jan-2020 15:18:40 Unpacking r-base-dev (3.4.4-1xenial0) ... build 22-Jan-2020 15:18:40 Processing triggers for libc-bin (2.23-0ubuntu11) ... build 22-Jan-2020 15:18:41 Processing triggers for mime-support (3.59ubuntu1) ... build 22-Jan-2020 15:18:41 Setting up libgdbm3:amd64 (1.8.3-13.1) ... build 22-Jan-2020 15:18:41 Setting up libglib2.0-0:amd64 (2.48.2-0ubuntu4.4) ... build 22-Jan-2020 15:18:41 No schema files found: doing nothing. build 22-Jan-2020 15:18:42 Setting up libxau6:amd64 (1:1.0.8-1) ... build 22-Jan-2020 15:18:42 Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... build 22-Jan-2020 15:18:42 Setting up libxcb1:amd64 (1.11.1-1ubuntu1) ... build 22-Jan-2020 15:18:42 Setting up libx11-data (2:1.6.3-1ubuntu2.1) ... build 22-Jan-2020 15:18:42 Setting up libx11-6:amd64 (2:1.6.3-1ubuntu2.1) ... build 22-Jan-2020 15:18:42 Setting up libxext6:amd64 (2:1.3.3-1) ... build 22-Jan-2020 15:18:43 Setting up groff-base (1.22.3-7) ... build 22-Jan-2020 15:18:43 Setting up bsdmainutils (9.0.6ubuntu3) ... build 22-Jan-2020 15:18:43 update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode build 22-Jan-2020 15:18:43 update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode build 22-Jan-2020 15:18:43 Setting up libpipeline1:amd64 (1.4.1-2) ... build 22-Jan-2020 15:18:43 Setting up man-db (2.7.5-1) ... build 22-Jan-2020 15:18:44 debconf: unable to initialize frontend: Dialog build 22-Jan-2020 15:18:44 debconf: (TERM is not set, so the dialog frontend is not usable.) build 22-Jan-2020 15:18:44 debconf: falling back to frontend: Readline build 22-Jan-2020 15:18:44 Building database of manual pages ... build 22-Jan-2020 15:18:52 Setting up fonts-dejavu-core (2.35-1) ... build 22-Jan-2020 15:18:53 Setting up ucf (3.0036) ... build 22-Jan-2020 15:18:53 debconf: unable to initialize frontend: Dialog build 22-Jan-2020 15:18:53 debconf: (TERM is not set, so the dialog frontend is not usable.) build 22-Jan-2020 15:18:53 debconf: falling back to frontend: Readline build 22-Jan-2020 15:18:53 Setting up fontconfig-config (2.11.94-0ubuntu1.1) ... build 22-Jan-2020 15:18:56 Setting up libpng12-0:amd64 (1.2.54-1ubuntu1.1) ... build 22-Jan-2020 15:18:56 Setting up libfreetype6:amd64 (2.6.1-0.1ubuntu2.4) ... build 22-Jan-2020 15:18:56 Setting up libfontconfig1:amd64 (2.11.94-0ubuntu1.1) ... build 22-Jan-2020 15:18:57 Setting up fontconfig (2.11.94-0ubuntu1.1) ... build 22-Jan-2020 15:18:59 Regenerating fonts cache... done. build 22-Jan-2020 15:18:59 Setting up x11-common (1:7.7+13ubuntu3.1) ... build 22-Jan-2020 15:19:00 debconf: unable to initialize frontend: Dialog build 22-Jan-2020 15:19:00 debconf: (TERM is not set, so the dialog frontend is not usable.) build 22-Jan-2020 15:19:00 debconf: falling back to frontend: Readline build 22-Jan-2020 15:19:00 update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults build 22-Jan-2020 15:19:00 invoke-rc.d: could not determine current runlevel build 22-Jan-2020 15:19:00 invoke-rc.d: policy-rc.d denied execution of start. build 22-Jan-2020 15:19:01 Setting up libice6:amd64 (2:1.0.9-1) ... build 22-Jan-2020 15:19:01 Setting up libjpeg-turbo8:amd64 (1.4.2-0ubuntu3.3) ... build 22-Jan-2020 15:19:01 Setting up libpcrecpp0v5:amd64 (2:8.38-3.1) ... build 22-Jan-2020 15:19:02 Setting up libsigsegv2:amd64 (2.10-4) ... build 22-Jan-2020 15:19:02 Setting up libsm6:amd64 (2:1.2.2-1) ... build 22-Jan-2020 15:19:02 Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... build 22-Jan-2020 15:19:02 Setting up libxrender1:amd64 (1:0.9.9-0ubuntu1) ... build 22-Jan-2020 15:19:02 Setting up libxft2:amd64 (2.3.2-1) ... build 22-Jan-2020 15:19:02 Setting up libxss1:amd64 (1:1.2.2-1) ... build 22-Jan-2020 15:19:03 Setting up perl-modules-5.22 (5.22.1-9ubuntu0.6) ... build 22-Jan-2020 15:19:03 Setting up libperl5.22:amd64 (5.22.1-9ubuntu0.6) ... build 22-Jan-2020 15:19:03 Setting up perl (5.22.1-9ubuntu0.6) ... build 22-Jan-2020 15:19:03 update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode build 22-Jan-2020 15:19:03 Setting up libpython2.7-stdlib:amd64 (2.7.12-1ubuntu0~16.04.9) ... build 22-Jan-2020 15:19:04 Setting up python2.7 (2.7.12-1ubuntu0~16.04.9) ... build 22-Jan-2020 15:19:05 Setting up libpython-stdlib:amd64 (2.7.12-1~16.04) ... build 22-Jan-2020 15:19:05 Setting up python (2.7.12-1~16.04) ... build 22-Jan-2020 15:19:05 Setting up libjbig0:amd64 (2.1-3.1) ... build 22-Jan-2020 15:19:05 Setting up libmpfr4:amd64 (3.1.4-1) ... build 22-Jan-2020 15:19:06 Setting up libmpc3:amd64 (1.0.3-1) ... build 22-Jan-2020 15:19:06 Setting up tzdata (2019c-0ubuntu0.16.04) ... build 22-Jan-2020 15:19:06 debconf: unable to initialize frontend: Dialog build 22-Jan-2020 15:19:06 debconf: (TERM is not set, so the dialog frontend is not usable.) build 22-Jan-2020 15:19:06 debconf: falling back to frontend: Readline build 22-Jan-2020 15:19:06 build 22-Jan-2020 15:19:06 Current default time zone: 'Etc/UTC' build 22-Jan-2020 15:19:06 Local time is now: Wed Jan 22 21:19:06 UTC 2020. build 22-Jan-2020 15:19:06 Universal Time is now: Wed Jan 22 21:19:06 UTC 2020. build 22-Jan-2020 15:19:06 Run 'dpkg-reconfigure tzdata' if you wish to change it. build 22-Jan-2020 15:19:06 build 22-Jan-2020 15:19:06 Setting up bzip2 (1.0.6-8ubuntu0.2) ... build 22-Jan-2020 15:19:06 Setting up libmagic1:amd64 (1:5.25-2ubuntu1.3) ... build 22-Jan-2020 15:19:07 Setting up file (1:5.25-2ubuntu1.3) ... build 22-Jan-2020 15:19:07 Setting up netbase (5.3) ... build 22-Jan-2020 15:19:07 Setting up openssl (1.0.2g-1ubuntu4.15) ... build 22-Jan-2020 15:19:07 Setting up ca-certificates (20170717~16.04.2) ... build 22-Jan-2020 15:19:07 debconf: unable to initialize frontend: Dialog build 22-Jan-2020 15:19:07 debconf: (TERM is not set, so the dialog frontend is not usable.) build 22-Jan-2020 15:19:07 debconf: falling back to frontend: Readline build 22-Jan-2020 15:19:08 Setting up libasprintf0v5:amd64 (0.19.7-2ubuntu3.1) ... build 22-Jan-2020 15:19:08 Setting up gettext-base (0.19.7-2ubuntu3.1) ... build 22-Jan-2020 15:19:08 Setting up libicu55:amd64 (55.1-7ubuntu0.4) ... build 22-Jan-2020 15:19:08 Setting up libxml2:amd64 (2.9.3+dfsg1-1ubuntu0.6) ... build 22-Jan-2020 15:19:09 Setting up libxmuu1:amd64 (2:1.1.2-2) ... build 22-Jan-2020 15:19:09 Setting up xauth (1:1.0.9-1ubuntu2) ... build 22-Jan-2020 15:19:09 Setting up m4 (1.4.17-5) ... build 22-Jan-2020 15:19:09 Setting up autoconf (2.69-9) ... build 22-Jan-2020 15:19:09 Setting up autotools-dev (20150820.1) ... build 22-Jan-2020 15:19:09 Setting up automake (1:1.15-4ubuntu1) ... build 22-Jan-2020 15:19:10 update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode build 22-Jan-2020 15:19:10 Setting up binutils (2.26.1-1ubuntu1~16.04.8) ... build 22-Jan-2020 15:19:10 Setting up libc-dev-bin (2.23-0ubuntu11) ... build 22-Jan-2020 15:19:11 Setting up linux-libc-dev:amd64 (4.4.0-171.200) ... build 22-Jan-2020 15:19:11 Setting up libc6-dev:amd64 (2.23-0ubuntu11) ... build 22-Jan-2020 15:19:11 Setting up libisl15:amd64 (0.16.1-1) ... build 22-Jan-2020 15:19:11 Setting up cpp-5 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:19:11 Setting up cpp (4:5.3.1-1ubuntu1) ... build 22-Jan-2020 15:19:12 Setting up libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:19:12 Setting up libgomp1:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:19:12 Setting up libitm1:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:19:12 Setting up libatomic1:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:19:12 Setting up libasan2:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:19:12 Setting up liblsan0:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:19:13 Setting up libtsan0:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:19:13 Setting up libubsan0:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:19:13 Setting up libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:19:13 Setting up libmpx0:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:19:13 Setting up libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:19:13 Setting up libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:19:13 Setting up gcc-5 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:19:14 Setting up gcc (4:5.3.1-1ubuntu1) ... build 22-Jan-2020 15:19:14 Setting up libstdc++-5-dev:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:19:14 Setting up g++-5 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:19:14 Setting up g++ (4:5.3.1-1ubuntu1) ... build 22-Jan-2020 15:19:14 update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode build 22-Jan-2020 15:19:14 Setting up make (4.1-6) ... build 22-Jan-2020 15:19:14 Setting up libdpkg-perl (1.18.4ubuntu1.6) ... build 22-Jan-2020 15:19:14 Setting up xz-utils (5.1.1alpha+20120614-2ubuntu2) ... build 22-Jan-2020 15:19:15 update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode build 22-Jan-2020 15:19:15 Setting up patch (2.7.5-1ubuntu0.16.04.2) ... build 22-Jan-2020 15:19:15 Setting up dpkg-dev (1.18.4ubuntu1.6) ... build 22-Jan-2020 15:19:16 Setting up build-essential (12.1ubuntu2) ... build 22-Jan-2020 15:19:16 Setting up libcroco3:amd64 (0.6.11-1) ... build 22-Jan-2020 15:19:16 Setting up gettext (0.19.7-2ubuntu3.1) ... build 22-Jan-2020 15:19:16 Setting up intltool-debian (0.35.0+20060710.4) ... build 22-Jan-2020 15:19:16 Setting up po-debconf (1.0.19) ... build 22-Jan-2020 15:19:17 Setting up libarchive-zip-perl (1.56-2ubuntu0.1) ... build 22-Jan-2020 15:19:17 Setting up libfile-stripnondeterminism-perl (0.015-1) ... build 22-Jan-2020 15:19:17 Setting up libtimedate-perl (2.3000-2) ... build 22-Jan-2020 15:19:17 Setting up liburi-perl (1.71-1) ... build 22-Jan-2020 15:19:17 Setting up libencode-locale-perl (1.05-1) ... build 22-Jan-2020 15:19:17 Setting up libhttp-date-perl (6.02-1) ... build 22-Jan-2020 15:19:17 Setting up libfile-listing-perl (6.04-1) ... build 22-Jan-2020 15:19:18 Setting up libhtml-tagset-perl (3.20-2) ... build 22-Jan-2020 15:19:18 Setting up libhtml-parser-perl (3.72-1) ... build 22-Jan-2020 15:19:18 Setting up libhtml-tree-perl (5.03-2) ... build 22-Jan-2020 15:19:18 Setting up libio-html-perl (1.001-1) ... build 22-Jan-2020 15:19:18 Setting up liblwp-mediatypes-perl (6.02-1) ... build 22-Jan-2020 15:19:18 Setting up libhttp-message-perl (6.11-1) ... build 22-Jan-2020 15:19:18 Setting up libhttp-cookies-perl (6.01-1) ... build 22-Jan-2020 15:19:19 Setting up libhttp-negotiate-perl (6.00-2) ... build 22-Jan-2020 15:19:19 Setting up libnet-ssleay-perl (1.72-1build1) ... build 22-Jan-2020 15:19:19 Setting up libio-socket-ssl-perl (2.024-1) ... build 22-Jan-2020 15:19:20 Setting up libnet-http-perl (6.09-1) ... build 22-Jan-2020 15:19:20 Setting up libwww-robotrules-perl (6.01-1) ... build 22-Jan-2020 15:19:20 Setting up python-six (1.10.0-3) ... build 22-Jan-2020 15:19:21 Setting up python-pkg-resources (20.7.0-1) ... build 22-Jan-2020 15:19:22 Setting up python-scour (0.32-1) ... build 22-Jan-2020 15:19:23 Setting up libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:19:23 Setting up libgfortran-5-dev:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:19:24 Setting up gfortran-5 (5.4.0-6ubuntu1~16.04.12) ... build 22-Jan-2020 15:19:24 Setting up gfortran (4:5.3.1-1ubuntu1) ... build 22-Jan-2020 15:19:24 update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode build 22-Jan-2020 15:19:24 update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode build 22-Jan-2020 15:19:24 Setting up icu-devtools (55.1-7ubuntu0.4) ... build 22-Jan-2020 15:19:24 Setting up libblas-common (3.6.0-2ubuntu2) ... build 22-Jan-2020 15:19:24 Setting up libblas3 (3.6.0-2ubuntu2) ... build 22-Jan-2020 15:19:24 update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode build 22-Jan-2020 15:19:24 Setting up libblas-dev (3.6.0-2ubuntu2) ... build 22-Jan-2020 15:19:25 update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode build 22-Jan-2020 15:19:25 Setting up libbz2-dev:amd64 (1.0.6-8ubuntu0.2) ... build 22-Jan-2020 15:19:25 Setting up libpixman-1-0:amd64 (0.33.6-1) ... build 22-Jan-2020 15:19:25 Setting up libxcb-render0:amd64 (1.11.1-1ubuntu1) ... build 22-Jan-2020 15:19:25 Setting up libxcb-shm0:amd64 (1.11.1-1ubuntu1) ... build 22-Jan-2020 15:19:26 Setting up libcairo2:amd64 (1.14.6-1) ... build 22-Jan-2020 15:19:26 Setting up libcurl3:amd64 (7.47.0-1ubuntu2.14) ... build 22-Jan-2020 15:19:26 Setting up libdatrie1:amd64 (0.2.10-2) ... build 22-Jan-2020 15:19:27 Setting up libgraphite2-3:amd64 (1.3.10-0ubuntu0.16.04.1) ... build 22-Jan-2020 15:19:27 Setting up libharfbuzz0b:amd64 (1.0.1-1ubuntu0.1) ... build 22-Jan-2020 15:19:27 Setting up libicu-dev:amd64 (55.1-7ubuntu0.4) ... build 22-Jan-2020 15:19:27 Setting up libjpeg-turbo8-dev:amd64 (1.4.2-0ubuntu3.3) ... build 22-Jan-2020 15:19:27 Setting up libjpeg8:amd64 (8c-2ubuntu8) ... build 22-Jan-2020 15:19:27 Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... build 22-Jan-2020 15:19:27 Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... build 22-Jan-2020 15:19:28 Setting up liblapack3 (3.6.0-2ubuntu2) ... build 22-Jan-2020 15:19:28 update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode build 22-Jan-2020 15:19:28 Setting up liblapack-dev (3.6.0-2ubuntu2) ... build 22-Jan-2020 15:19:28 update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode build 22-Jan-2020 15:19:28 Setting up libtinfo-dev:amd64 (6.0+20160213-1ubuntu1) ... build 22-Jan-2020 15:19:28 Setting up libncurses5-dev:amd64 (6.0+20160213-1ubuntu1) ... build 22-Jan-2020 15:19:28 Setting up libthai-data (0.1.24-2) ... build 22-Jan-2020 15:19:29 Setting up libthai0:amd64 (0.1.24-2) ... build 22-Jan-2020 15:19:29 Setting up libpango-1.0-0:amd64 (1.38.1-1) ... build 22-Jan-2020 15:19:29 Setting up libpangoft2-1.0-0:amd64 (1.38.1-1) ... build 22-Jan-2020 15:19:29 Setting up libpangocairo-1.0-0:amd64 (1.38.1-1) ... build 22-Jan-2020 15:19:29 Setting up libpaper1:amd64 (1.1.24+nmu4ubuntu1) ... build 22-Jan-2020 15:19:29 debconf: unable to initialize frontend: Dialog build 22-Jan-2020 15:19:29 debconf: (TERM is not set, so the dialog frontend is not usable.) build 22-Jan-2020 15:19:29 debconf: falling back to frontend: Readline build 22-Jan-2020 15:19:29 build 22-Jan-2020 15:19:29 Creating config file /etc/papersize with new version build 22-Jan-2020 15:19:30 Setting up libpaper-utils (1.1.24+nmu4ubuntu1) ... build 22-Jan-2020 15:19:30 Setting up libpcre16-3:amd64 (2:8.38-3.1) ... build 22-Jan-2020 15:19:30 Setting up libpcre32-3:amd64 (2:8.38-3.1) ... build 22-Jan-2020 15:19:31 Setting up libpcre3-dev:amd64 (2:8.38-3.1) ... build 22-Jan-2020 15:19:31 Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4.3) ... build 22-Jan-2020 15:19:31 Setting up libpng12-dev:amd64 (1.2.54-1ubuntu1.1) ... build 22-Jan-2020 15:19:31 Setting up libreadline6-dev:amd64 (6.3-8ubuntu2) ... build 22-Jan-2020 15:19:32 Setting up libreadline-dev:amd64 (6.3-8ubuntu2) ... build 22-Jan-2020 15:19:32 Setting up libtcl8.6:amd64 (8.6.5+dfsg-2) ... build 22-Jan-2020 15:19:32 Setting up libtiff5:amd64 (4.0.6-1ubuntu0.7) ... build 22-Jan-2020 15:19:32 Setting up libtk8.6:amd64 (8.6.5-1) ... build 22-Jan-2020 15:19:32 Setting up libxt6:amd64 (1:1.1.5-0ubuntu1) ... build 22-Jan-2020 15:19:32 Setting up pkg-config (0.29.1-0ubuntu1) ... build 22-Jan-2020 15:19:33 Setting up zip (3.0-11) ... build 22-Jan-2020 15:19:33 Setting up unzip (6.0-20ubuntu1) ... build 22-Jan-2020 15:19:33 Setting up xdg-utils (1.1.1-1ubuntu1.16.04.3) ... build 22-Jan-2020 15:19:33 Setting up r-base-core (3.4.4-1xenial0) ... build 22-Jan-2020 15:19:33 debconf: unable to initialize frontend: Dialog build 22-Jan-2020 15:19:33 debconf: (TERM is not set, so the dialog frontend is not usable.) build 22-Jan-2020 15:19:33 debconf: falling back to frontend: Readline build 22-Jan-2020 15:19:33 build 22-Jan-2020 15:19:33 Creating config file /etc/R/Renviron with new version build 22-Jan-2020 15:19:34 Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... build 22-Jan-2020 15:19:34 Setting up debhelper (9.20160115ubuntu3) ... build 22-Jan-2020 15:19:34 Setting up libwww-perl (6.15-1) ... build 22-Jan-2020 15:19:34 Setting up libxml-parser-perl (2.44-1build1) ... build 22-Jan-2020 15:19:34 Setting up intltool (0.51.0-2ubuntu1.16.04.1) ... build 22-Jan-2020 15:19:34 Setting up dh-translations (129) ... build 22-Jan-2020 15:19:35 Setting up cdbs (0.4.130ubuntu2) ... build 22-Jan-2020 15:19:35 Setting up r-base-dev (3.4.4-1xenial0) ... build 22-Jan-2020 15:19:35 Setting up dh-strip-nondeterminism (0.015-1) ... build 22-Jan-2020 15:19:36 Setting up liblwp-protocol-https-perl (6.06-2) ... build 22-Jan-2020 15:19:36 Processing triggers for libc-bin (2.23-0ubuntu11) ... build 22-Jan-2020 15:19:36 Processing triggers for systemd (229-4ubuntu21.23) ... build 22-Jan-2020 15:19:36 Processing triggers for ca-certificates (20170717~16.04.2) ... build 22-Jan-2020 15:19:36 Updating certificates in /etc/ssl/certs... build 22-Jan-2020 15:19:38 148 added, 0 removed; done. build 22-Jan-2020 15:19:38 Running hooks in /etc/ca-certificates/update.d... build 22-Jan-2020 15:19:38 done. build 22-Jan-2020 15:19:38 Installing package into '/usr/local/lib/R/site-library' build 22-Jan-2020 15:19:38 (as 'lib' is unspecified) build 22-Jan-2020 15:19:39 trying URL 'http://cran.rstudio.com/src/contrib/jsonlite_1.6.tar.gz' build 22-Jan-2020 15:19:39 Content type 'application/x-gzip' length 1052728 bytes (1.0 MB) build 22-Jan-2020 15:19:39 ================================================== build 22-Jan-2020 15:19:39 downloaded 1.0 MB build 22-Jan-2020 15:19:39 build 22-Jan-2020 15:19:40 * installing *source* package 'jsonlite' ... build 22-Jan-2020 15:19:40 ** package 'jsonlite' successfully unpacked and MD5 sums checked build 22-Jan-2020 15:19:40 ** libs build 22-Jan-2020 15:19:40 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base64.c -o base64.o build 22-Jan-2020 15:19:40 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_array.c -o collapse_array.o build 22-Jan-2020 15:19:40 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_object.c -o collapse_object.o build 22-Jan-2020 15:19:40 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_pretty.c -o collapse_pretty.o build 22-Jan-2020 15:19:40 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c escape_chars.c -o escape_chars.o build 22-Jan-2020 15:19:40 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c integer64_to_na.c -o integer64_to_na.o build 22-Jan-2020 15:19:40 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_datelist.c -o is_datelist.o build 22-Jan-2020 15:19:40 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_recordlist.c -o is_recordlist.o build 22-Jan-2020 15:19:40 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_scalarlist.c -o is_scalarlist.o build 22-Jan-2020 15:19:40 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c modp_numtoa.c -o modp_numtoa.o build 22-Jan-2020 15:19:40 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c null_to_na.c -o null_to_na.o build 22-Jan-2020 15:19:41 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c num_to_char.c -o num_to_char.o build 22-Jan-2020 15:19:41 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c parse.c -o parse.o build 22-Jan-2020 15:19:41 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c prettify.c -o prettify.o build 22-Jan-2020 15:19:41 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c push_parser.c -o push_parser.o build 22-Jan-2020 15:19:41 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c r-base64.c -o r-base64.o build 22-Jan-2020 15:19:41 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c register.c -o register.o build 22-Jan-2020 15:19:41 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c row_collapse.c -o row_collapse.o build 22-Jan-2020 15:19:41 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transpose_list.c -o transpose_list.o build 22-Jan-2020 15:19:41 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c validate.c -o validate.o build 22-Jan-2020 15:19:41 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl.c -o yajl/yajl.o build 22-Jan-2020 15:19:41 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o build 22-Jan-2020 15:19:41 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_buf.c -o yajl/yajl_buf.o build 22-Jan-2020 15:19:41 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_encode.c -o yajl/yajl_encode.o build 22-Jan-2020 15:19:41 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_gen.c -o yajl/yajl_gen.o build 22-Jan-2020 15:19:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_lex.c -o yajl/yajl_lex.o build 22-Jan-2020 15:19:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_parser.c -o yajl/yajl_parser.o build 22-Jan-2020 15:19:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_tree.c -o yajl/yajl_tree.o build 22-Jan-2020 15:19:42 ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o build 22-Jan-2020 15:19:42 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/usr/lib/R/lib -lR build 22-Jan-2020 15:19:42 installing to /usr/local/lib/R/site-library/jsonlite/libs build 22-Jan-2020 15:19:42 ** R build 22-Jan-2020 15:19:42 ** inst build 22-Jan-2020 15:19:42 ** preparing package for lazy loading build 22-Jan-2020 15:19:42 ** help build 22-Jan-2020 15:19:42 *** installing help indices build 22-Jan-2020 15:19:42 ** building package indices build 22-Jan-2020 15:19:42 ** installing vignettes build 22-Jan-2020 15:19:42 ** testing if installed package can be loaded build 22-Jan-2020 15:19:43 * DONE (jsonlite) build 22-Jan-2020 15:19:43  build 22-Jan-2020 15:19:43 The downloaded source packages are in build 22-Jan-2020 15:19:43 '/tmp/RtmpaAAEJd/downloaded_packages' build 22-Jan-2020 15:19:43 [1] "/usr/local/lib/R/site-library/jsonlite" build 22-Jan-2020 15:19:50 Removing intermediate container f1e6f9cd3f75 build 22-Jan-2020 15:19:50 ---> 7b25ef119365 build 22-Jan-2020 15:19:50 Step 5/11 : COPY r_extractor.py launcher.R /home/clowder/ build 22-Jan-2020 15:19:50 ---> d9fc5b26e3c4 build 22-Jan-2020 15:19:50 Step 6/11 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 22-Jan-2020 15:19:51 ---> Running in 690b2dc0e949 build 22-Jan-2020 15:19:51 Removing intermediate container 690b2dc0e949 build 22-Jan-2020 15:19:51 ---> dc5b875cd058 build 22-Jan-2020 15:19:51 Step 7/11 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 22-Jan-2020 15:19:51 ---> Running in 7addfff3c848 build 22-Jan-2020 15:19:51 Removing intermediate container 7addfff3c848 build 22-Jan-2020 15:19:51 ---> bc5e05a85f2f build 22-Jan-2020 15:19:51 Step 8/11 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ build 22-Jan-2020 15:19:52 ---> Running in 1d8b71ac245c build 22-Jan-2020 15:19:52 Removing intermediate container 1d8b71ac245c build 22-Jan-2020 15:19:52 ---> 3857c2565aa8 build 22-Jan-2020 15:19:52 Step 9/11 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi build 22-Jan-2020 15:19:52 ---> Running in c64280437a7b build 22-Jan-2020 15:19:52 Removing intermediate container c64280437a7b build 22-Jan-2020 15:19:52 ---> 28fdd0d362a7 build 22-Jan-2020 15:19:52 Step 10/11 : ONBUILD ADD . /home/clowder/ build 22-Jan-2020 15:19:53 ---> Running in 274c23f1b117 build 22-Jan-2020 15:19:53 Removing intermediate container 274c23f1b117 build 22-Jan-2020 15:19:53 ---> be7e63cf0e64 build 22-Jan-2020 15:19:53 Step 11/11 : CMD python r_extractor.py build 22-Jan-2020 15:19:53 ---> Running in 166d028a4b0d build 22-Jan-2020 15:19:54 Removing intermediate container 166d028a4b0d build 22-Jan-2020 15:19:54 ---> 5e921740cc5f build 22-Jan-2020 15:19:54 Successfully built 5e921740cc5f build 22-Jan-2020 15:19:54 Successfully tagged clowder/extractors-simple-r-extractor-python3:onbuild build 22-Jan-2020 15:19:54 Sending build context to Docker daemon 9.728kB build 22-Jan-2020 15:19:54 build 22-Jan-2020 15:19:54 Step 1/3 : ARG PYCLOWDER_PYTHON="" build 22-Jan-2020 15:19:54 Step 2/3 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:onbuild build 22-Jan-2020 15:19:54 # Executing 5 build triggers build 22-Jan-2020 15:19:55 ---> Running in 26362bb27ea9 build 22-Jan-2020 15:19:56 Removing intermediate container 26362bb27ea9 build 22-Jan-2020 15:19:57 ---> Running in 392b423f4017 build 22-Jan-2020 15:19:59 Removing intermediate container 392b423f4017 build 22-Jan-2020 15:19:59 ---> b6a74d0b6f26 build 22-Jan-2020 15:19:59 Step 3/3 : ENV MAIN_SCRIPT="wordcount.py" build 22-Jan-2020 15:20:00 ---> Running in 499c9ab7640a build 22-Jan-2020 15:20:00 Removing intermediate container 499c9ab7640a build 22-Jan-2020 15:20:00 ---> 754c02f6e745 build 22-Jan-2020 15:20:00 Successfully built 754c02f6e745 build 22-Jan-2020 15:20:00 Successfully tagged clowder/extractors-wordcount:latest build 22-Jan-2020 15:20:00 Sending build context to Docker daemon 5.12kB build 22-Jan-2020 15:20:00 build 22-Jan-2020 15:20:00 Step 1/4 : ARG PYCLOWDER_PYTHON="" build 22-Jan-2020 15:20:00 Step 2/4 : FROM clowder/extractors-simple-extractor${PYCLOWDER_PYTHON}:onbuild build 22-Jan-2020 15:20:00 # Executing 5 build triggers build 22-Jan-2020 15:20:01 ---> Running in 30e127557656 build 22-Jan-2020 15:20:02 Removing intermediate container 30e127557656 build 22-Jan-2020 15:20:03 ---> Running in 6c6235ff9534 build 22-Jan-2020 15:20:05 Removing intermediate container 6c6235ff9534 build 22-Jan-2020 15:20:06 ---> 1f0881c4a658 build 22-Jan-2020 15:20:06 Step 3/4 : ENV EXTRACTION_FUNC="wordcount" build 22-Jan-2020 15:20:06 ---> Running in e29044d5d8d7 build 22-Jan-2020 15:20:06 Removing intermediate container e29044d5d8d7 build 22-Jan-2020 15:20:06 ---> 7ef45c1884e4 build 22-Jan-2020 15:20:06 Step 4/4 : ENV EXTRACTION_MODULE="wordcount" build 22-Jan-2020 15:20:06 ---> Running in b5313930e46a build 22-Jan-2020 15:20:07 Removing intermediate container b5313930e46a build 22-Jan-2020 15:20:07 ---> e6c368142a9a build 22-Jan-2020 15:20:07 Successfully built e6c368142a9a build 22-Jan-2020 15:20:07 Successfully tagged clowder/extractors-wordcount-simple-extractor:latest build 22-Jan-2020 15:20:07 Sending build context to Docker daemon 5.12kB build 22-Jan-2020 15:20:07 build 22-Jan-2020 15:20:07 Step 1/3 : ARG PYCLOWDER_PYTHON="" build 22-Jan-2020 15:20:07 Step 2/3 : FROM clowder/extractors-simple-r-extractor${PYCLOWDER_PYTHON}:onbuild build 22-Jan-2020 15:20:07 # Executing 5 build triggers build 22-Jan-2020 15:20:07 ---> Running in b33002336d82 build 22-Jan-2020 15:20:09 Removing intermediate container b33002336d82 build 22-Jan-2020 15:20:10 ---> Running in 54a46ce13674 build 22-Jan-2020 15:20:12 Removing intermediate container 54a46ce13674 build 22-Jan-2020 15:20:13 ---> bd27f08bd413 build 22-Jan-2020 15:20:13 Step 3/3 : ENV R_SCRIPT="wordcount.R" R_FUNCTION="process_file" build 22-Jan-2020 15:20:13 ---> Running in b47e3063864d build 22-Jan-2020 15:20:13 Removing intermediate container b47e3063864d build 22-Jan-2020 15:20:13 ---> da7e119e1801 build 22-Jan-2020 15:20:13 Successfully built da7e119e1801 build 22-Jan-2020 15:20:13 Successfully tagged clowder/extractors-wordcount-simple-r-extractor:latest simple 22-Jan-2020 15:20:14 Finished task 'docker build and push' with result: Success simple 22-Jan-2020 15:20:14 Running post build plugin 'Docker Container Cleanup' simple 22-Jan-2020 15:20:14 Running post build plugin 'NCover Results Collector' simple 22-Jan-2020 15:20:14 Running post build plugin 'Clover Results Collector' simple 22-Jan-2020 15:20:14 Running post build plugin 'npm Cache Cleanup' simple 22-Jan-2020 15:20:14 Running post build plugin 'Artifact Copier' simple 22-Jan-2020 15:20:14 Finalising the build... simple 22-Jan-2020 15:20:14 Stopping timer. simple 22-Jan-2020 15:20:14 Build CATS-PYC56-JOB1-3 completed. simple 22-Jan-2020 15:20:14 Running on server: post build plugin 'NCover Results Collector' simple 22-Jan-2020 15:20:14 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 22-Jan-2020 15:20:14 Running on server: post build plugin 'Clover Delta Calculator' simple 22-Jan-2020 15:20:14 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 22-Jan-2020 15:20:14 All post build plugins have finished simple 22-Jan-2020 15:20:14 Generating build results summary... simple 22-Jan-2020 15:20:14 Saving build results to disk... simple 22-Jan-2020 15:20:14 Logging substituted variables... simple 22-Jan-2020 15:20:14 Indexing build results... simple 22-Jan-2020 15:20:14 Finished building CATS-PYC56-JOB1-3.