simple 24-Feb-2020 17:41:25 Build Clowder - pyclowder - command-line-app - Default Job #11 (CATS-PYC58-JOB1-11) started building on agent buildserver-1.os.ncsa.edu simple 24-Feb-2020 17:41:25 Remote agent on host buildserver-1.os.ncsa.edu simple 24-Feb-2020 17:41:25 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC58-JOB1 simple 24-Feb-2020 17:41:25 Executing build Clowder - pyclowder - command-line-app - Default Job #11 (CATS-PYC58-JOB1-11) simple 24-Feb-2020 17:41:25 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 24-Feb-2020 17:41:25 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC58-JOB1 simple 24-Feb-2020 17:41:25 Updating source code to revision: 344f1d152d0cb951827411bfafe7fd40584f9ce3 simple 24-Feb-2020 17:41:25 Fetching 'refs/heads/command-line-app' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git'. Will try to do a shallow fetch. simple 24-Feb-2020 17:41:25 Warning: Permanently added '[127.0.0.1]:44582' (RSA) to the list of known hosts. simple 24-Feb-2020 17:41:25 From ssh://127.0.0.1:44582/cats/pyclowder simple 24-Feb-2020 17:41:25 + ddc964c...344f1d1 command-line-app -> command-line-app (forced update) simple 24-Feb-2020 17:41:25 Checking out revision 344f1d152d0cb951827411bfafe7fd40584f9ce3. simple 24-Feb-2020 17:41:25 Already on 'command-line-app' simple 24-Feb-2020 17:41:25 Updated source code to revision: 344f1d152d0cb951827411bfafe7fd40584f9ce3 simple 24-Feb-2020 17:41:25 Finished task 'Checkout Default Repository' with result: Success simple 24-Feb-2020 17:41:25 Running pre-build action: VCS Version Collector simple 24-Feb-2020 17:41:25 Starting task 'docker build and push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 24-Feb-2020 17:41:25 Beginning to execute external process for build 'Clowder - pyclowder - command-line-app - Default Job #11 (CATS-PYC58-JOB1-11)'\n ... running command line: \n/bin/sh docker.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC58-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=command-line-app\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_planRepository_1_branchDisplayName=command-line-app\nbamboo_repository_revision_number=344f1d152d0cb951827411bfafe7fd40584f9ce3\nbamboo_repository_182059061_previous_revision_number=0b3fb5943139adfb2d467c69aaf9dff81c9da43d\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC58-JOB1-11\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC58-JOB1\nbamboo_planRepository_1_name=pyclowder\nbamboo_buildKey=CATS-PYC58-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=pyclowder\nbamboo_planRepository_name=pyclowder\nbamboo_buildNumber=11\nbamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt\nbamboo_shortJobName=Default Job\nbamboo_capability_system_builder_command_python3_6=/usr/bin/python3.6\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC58-JOB1-11\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git\nbamboo_agentId=140673027\nbamboo_planName=Clowder - pyclowder - command-line-app\nbamboo_shortPlanKey=PYC58\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_builder_node_Node_js_v12_14_1=/home/bamboo/node-v12.14.1/bin/node\nbamboo_planRepository_revision=344f1d152d0cb951827411bfafe7fd40584f9ce3\nbamboo_buildTimeStamp=2020-02-24T17:41:25.131-06:00\nbamboo_repository_previous_revision_number=0b3fb5943139adfb2d467c69aaf9dff81c9da43d\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_planRepository_previousRevision=0b3fb5943139adfb2d467c69aaf9dff81c9da43d\nbamboo_repository_182059061_git_branch=command-line-app\nbamboo_repository_git_branch=command-line-app\nbamboo_buildResultKey=CATS-PYC58-JOB1-11\nbamboo_repository_branch_name=command-line-app\nbamboo_buildPlanName=Clowder - pyclowder - command-line-app - Default Job\nbamboo_planRepository_1_revision=344f1d152d0cb951827411bfafe7fd40584f9ce3\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=pyclowder\nbamboo_buildFailed=false\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_repository_182059061_revision_number=344f1d152d0cb951827411bfafe7fd40584f9ce3\nbamboo_planRepository_branch=command-line-app\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=0b3fb5943139adfb2d467c69aaf9dff81c9da43d\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_planRepository_branchDisplayName=command-line-app\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=command-line-app\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-181927988\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git\nbamboo_repository_182059061_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_node_Node_js_v9_3_0=/home/bamboo/node-v9.3.0/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC58-JOB1\nbamboo_planKey=CATS-PYC58\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_repository_182059061_name=pyclowder\nbamboo_repository_182059061_git_username=\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_repository_182059061_branch_name=command-line-app\nbamboo_planRepository_1_branchName=command-line-app\n build 24-Feb-2020 17:41:25 Sending build context to Docker daemon 241.2kB build 24-Feb-2020 17:41:25 build 24-Feb-2020 17:41:25 Step 1/10 : FROM ubuntu:16.04 build 24-Feb-2020 17:41:25 ---> 77be327e4b63 build 24-Feb-2020 17:41:25 Step 2/10 : ARG PYTHON_VERSION="2.7" build 24-Feb-2020 17:41:25 ---> Using cache build 24-Feb-2020 17:41:25 ---> e7470cc67466 build 24-Feb-2020 17:41:25 Step 3/10 : ENV PYTHON_VERSION=${PYTHON_VERSION} RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" build 24-Feb-2020 17:41:25 ---> Using cache build 24-Feb-2020 17:41:25 ---> 750dcdbb0948 build 24-Feb-2020 17:41:25 Step 4/10 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python${PYTHON_VERSION} curl && if [ ! -e /usr/bin/python ]; then ln -s /usr/bin/python${PYTHON_VERSION} /usr/bin/python; fi && curl -k https://bootstrap.pypa.io/get-pip.py -o /tmp/get-pip.py && python /tmp/get-pip.py && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* /tmp/get-pip.py build 24-Feb-2020 17:41:25 ---> Using cache build 24-Feb-2020 17:41:25 ---> df16d6358718 build 24-Feb-2020 17:41:25 Step 5/10 : COPY pyclowder /tmp/pyclowder/pyclowder build 24-Feb-2020 17:41:26 ---> 9329e904b483 build 24-Feb-2020 17:41:26 Step 6/10 : COPY setup.py description.rst /tmp/pyclowder/ build 24-Feb-2020 17:41:26 ---> a2b50ec0a2a3 build 24-Feb-2020 17:41:26 Step 7/10 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder build 24-Feb-2020 17:41:27 ---> Running in 7f72499542f4 build 24-Feb-2020 17:41:28 DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support build 24-Feb-2020 17:41:28 Processing /tmp/pyclowder build 24-Feb-2020 17:41:28 Collecting enum34==1.1.6 build 24-Feb-2020 17:41:28 Downloading enum34-1.1.6-py2-none-any.whl (12 kB) build 24-Feb-2020 17:41:28 Collecting pika==1.0.0 build 24-Feb-2020 17:41:28 Downloading pika-1.0.0-py2.py3-none-any.whl (148 kB) build 24-Feb-2020 17:41:28 Collecting PyYAML==5.1 build 24-Feb-2020 17:41:28 Downloading PyYAML-5.1.tar.gz (274 kB) build 24-Feb-2020 17:41:29 Collecting requests==2.21.0 build 24-Feb-2020 17:41:29 Downloading requests-2.21.0-py2.py3-none-any.whl (57 kB) build 24-Feb-2020 17:41:29 Collecting requests-toolbelt==0.9.1 build 24-Feb-2020 17:41:29 Downloading requests_toolbelt-0.9.1-py2.py3-none-any.whl (54 kB) build 24-Feb-2020 17:41:29 Collecting certifi>=2017.4.17 build 24-Feb-2020 17:41:29 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) build 24-Feb-2020 17:41:29 Collecting urllib3<1.25,>=1.21.1 build 24-Feb-2020 17:41:29 Downloading urllib3-1.24.3-py2.py3-none-any.whl (118 kB) build 24-Feb-2020 17:41:29 Collecting chardet<3.1.0,>=3.0.2 build 24-Feb-2020 17:41:29 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) build 24-Feb-2020 17:41:29 Collecting idna<2.9,>=2.5 build 24-Feb-2020 17:41:29 Downloading idna-2.8-py2.py3-none-any.whl (58 kB) build 24-Feb-2020 17:41:29 Building wheels for collected packages: pyclowder, PyYAML build 24-Feb-2020 17:41:29 Building wheel for pyclowder (setup.py): started build 24-Feb-2020 17:41:30 Building wheel for pyclowder (setup.py): finished with status 'done' build 24-Feb-2020 17:41:30 Created wheel for pyclowder: filename=pyclowder-3.0.0-py2-none-any.whl size=27545 sha256=511394913c5b2abaebe056fff00bda7734f03f5dac27287d1f42cffe8570ae2a build 24-Feb-2020 17:41:30 Stored in directory: /tmp/pip-ephem-wheel-cache-xl5Q7P/wheels/ca/ce/c0/67204d60f211af388337f8e76df4c54d5ff199d66646616f34 build 24-Feb-2020 17:41:30 Building wheel for PyYAML (setup.py): started build 24-Feb-2020 17:41:30 Building wheel for PyYAML (setup.py): finished with status 'done' build 24-Feb-2020 17:41:30 Created wheel for PyYAML: filename=PyYAML-5.1-cp27-cp27mu-linux_x86_64.whl size=44881 sha256=9e408647f240782c4969ea5398c8a42cc419af2cfa56f4ecc8e88959699a6cf6 build 24-Feb-2020 17:41:30 Stored in directory: /root/.cache/pip/wheels/a2/39/f3/2601aa6630b855ea35bc2a13ae08ddb71edab0b053d750ef8a build 24-Feb-2020 17:41:30 Successfully built pyclowder PyYAML build 24-Feb-2020 17:41:30 Installing collected packages: enum34, pika, PyYAML, certifi, urllib3, chardet, idna, requests, requests-toolbelt, pyclowder build 24-Feb-2020 17:41:30 Successfully installed PyYAML-5.1 certifi-2019.11.28 chardet-3.0.4 enum34-1.1.6 idna-2.8 pika-1.0.0 pyclowder-3.0.0 requests-2.21.0 requests-toolbelt-0.9.1 urllib3-1.24.3 build 24-Feb-2020 17:41:32 Removing intermediate container 7f72499542f4 build 24-Feb-2020 17:41:32 ---> f9778192b3c2 build 24-Feb-2020 17:41:32 Step 8/10 : WORKDIR /home/clowder build 24-Feb-2020 17:41:32 ---> Running in d47c3da42946 build 24-Feb-2020 17:41:32 Removing intermediate container d47c3da42946 build 24-Feb-2020 17:41:32 ---> f03bca00dc3c build 24-Feb-2020 17:41:32 Step 9/10 : COPY notifications.json /home/clowder/ build 24-Feb-2020 17:41:33 ---> f0a0479f3df2 build 24-Feb-2020 17:41:33 Step 10/10 : CMD python "./${MAIN_SCRIPT}" build 24-Feb-2020 17:41:33 ---> Running in 5a151f549c92 build 24-Feb-2020 17:41:33 Removing intermediate container 5a151f549c92 build 24-Feb-2020 17:41:33 ---> 3a8959fb9d8d build 24-Feb-2020 17:41:33 Successfully built 3a8959fb9d8d build 24-Feb-2020 17:41:33 Successfully tagged clowder/pyclowder:latest build 24-Feb-2020 17:41:33 Sending build context to Docker daemon 239.1kB build 24-Feb-2020 17:41:33 build 24-Feb-2020 17:41:33 Step 1/7 : ARG PYCLOWDER_PYTHON="" build 24-Feb-2020 17:41:33 Step 2/7 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest build 24-Feb-2020 17:41:33 ---> 3a8959fb9d8d build 24-Feb-2020 17:41:33 Step 3/7 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 24-Feb-2020 17:41:34 ---> Running in 4c8c28e693bc build 24-Feb-2020 17:41:34 Removing intermediate container 4c8c28e693bc build 24-Feb-2020 17:41:34 ---> f4fb55177f84 build 24-Feb-2020 17:41:34 Step 4/7 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 24-Feb-2020 17:41:34 ---> Running in f5a2ea15a5d8 build 24-Feb-2020 17:41:35 Removing intermediate container f5a2ea15a5d8 build 24-Feb-2020 17:41:35 ---> b25cab957693 build 24-Feb-2020 17:41:35 Step 5/7 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 24-Feb-2020 17:41:35 ---> Running in 65946fa00638 build 24-Feb-2020 17:41:36 Removing intermediate container 65946fa00638 build 24-Feb-2020 17:41:36 ---> 9ec43595769b build 24-Feb-2020 17:41:36 Step 6/7 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 24-Feb-2020 17:41:36 ---> Running in 42d7927be4cb build 24-Feb-2020 17:41:36 Removing intermediate container 42d7927be4cb build 24-Feb-2020 17:41:36 ---> 51324f684ea9 build 24-Feb-2020 17:41:36 Step 7/7 : ONBUILD ADD . /home/clowder/ build 24-Feb-2020 17:41:36 ---> Running in 1af9e9f494b8 build 24-Feb-2020 17:41:37 Removing intermediate container 1af9e9f494b8 build 24-Feb-2020 17:41:37 ---> 06683ddc36b9 build 24-Feb-2020 17:41:37 Successfully built 06683ddc36b9 build 24-Feb-2020 17:41:37 Successfully tagged clowder/pyclowder:onbuild build 24-Feb-2020 17:41:37 Sending build context to Docker daemon 12.8kB build 24-Feb-2020 17:41:37 build 24-Feb-2020 17:41:37 Step 1/6 : ARG PYCLOWDER_PYTHON="" build 24-Feb-2020 17:41:37 Step 2/6 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:onbuild build 24-Feb-2020 17:41:37 # Executing 5 build triggers build 24-Feb-2020 17:41:37 ---> Running in e18971446b9a build 24-Feb-2020 17:41:39 Removing intermediate container e18971446b9a build 24-Feb-2020 17:41:40 ---> Running in e9025d9ff1af build 24-Feb-2020 17:41:42 Removing intermediate container e9025d9ff1af build 24-Feb-2020 17:41:42 ---> da121c37a73e build 24-Feb-2020 17:41:42 Step 3/6 : ENV MAIN_SCRIPT="binary_extractor.py" RABBITMQ_QUEUE="" IMAGE_BINARY="" IMAGE_TYPE="" IMAGE_THUMBNAIL_COMMAND="" IMAGE_PREVIEW_COMMAND="" PREVIEW_BINARY="" PREVIEW_TYPE="" PREVIEW_COMMAND="" build 24-Feb-2020 17:41:42 ---> Running in 89686aba8d64 build 24-Feb-2020 17:41:43 Removing intermediate container 89686aba8d64 build 24-Feb-2020 17:41:43 ---> 0df757f827d5 build 24-Feb-2020 17:41:43 Step 4/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 24-Feb-2020 17:41:43 ---> Running in 004a609c4868 build 24-Feb-2020 17:41:44 Removing intermediate container 004a609c4868 build 24-Feb-2020 17:41:44 ---> 8d0f22d77b68 build 24-Feb-2020 17:41:44 Step 5/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 24-Feb-2020 17:41:44 ---> Running in 703c3f959afe build 24-Feb-2020 17:41:44 Removing intermediate container 703c3f959afe build 24-Feb-2020 17:41:44 ---> e97788204b72 build 24-Feb-2020 17:41:44 Step 6/6 : ONBUILD COPY extractor_info.json /home/clowder/ build 24-Feb-2020 17:41:44 ---> Running in a134287f5dc8 build 24-Feb-2020 17:41:45 Removing intermediate container a134287f5dc8 build 24-Feb-2020 17:41:45 ---> 0a3789110b0b build 24-Feb-2020 17:41:45 Successfully built 0a3789110b0b build 24-Feb-2020 17:41:45 Successfully tagged clowder/extractors-binary-preview:onbuild build 24-Feb-2020 17:41:45 Sending build context to Docker daemon 6.656kB build 24-Feb-2020 17:41:45 build 24-Feb-2020 17:41:45 Step 1/11 : ARG PYCLOWDER_PYTHON="" build 24-Feb-2020 17:41:45 Step 2/11 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest build 24-Feb-2020 17:41:45 ---> 3a8959fb9d8d build 24-Feb-2020 17:41:45 Step 3/11 : ENV EXTRACTION_FUNC="" build 24-Feb-2020 17:41:45 ---> Running in 42f21ca6a8e4 build 24-Feb-2020 17:41:45 Removing intermediate container 42f21ca6a8e4 build 24-Feb-2020 17:41:45 ---> 6e3c35fe5c9c build 24-Feb-2020 17:41:45 Step 4/11 : ENV EXTRACTION_MODULE="" build 24-Feb-2020 17:41:46 ---> Running in 8680491184b9 build 24-Feb-2020 17:41:46 Removing intermediate container 8680491184b9 build 24-Feb-2020 17:41:46 ---> 772a8a23bf01 build 24-Feb-2020 17:41:46 Step 5/11 : COPY simple_extractor.py . build 24-Feb-2020 17:41:46 ---> e8ed0ea3adb7 build 24-Feb-2020 17:41:46 Step 6/11 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 24-Feb-2020 17:41:46 ---> Running in 052bbfd0bc5c build 24-Feb-2020 17:41:47 Removing intermediate container 052bbfd0bc5c build 24-Feb-2020 17:41:47 ---> 5cc4fe726dbc build 24-Feb-2020 17:41:47 Step 7/11 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 24-Feb-2020 17:41:47 ---> Running in ee854344053c build 24-Feb-2020 17:41:48 Removing intermediate container ee854344053c build 24-Feb-2020 17:41:48 ---> 6e17e7758f27 build 24-Feb-2020 17:41:48 Step 8/11 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 24-Feb-2020 17:41:48 ---> Running in 67824d8f5330 build 24-Feb-2020 17:41:48 Removing intermediate container 67824d8f5330 build 24-Feb-2020 17:41:48 ---> 4161d98eca93 build 24-Feb-2020 17:41:48 Step 9/11 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 24-Feb-2020 17:41:48 ---> Running in a55abefa68e6 build 24-Feb-2020 17:41:49 Removing intermediate container a55abefa68e6 build 24-Feb-2020 17:41:49 ---> b25deac7577c build 24-Feb-2020 17:41:49 Step 10/11 : ONBUILD ADD . /home/clowder/ build 24-Feb-2020 17:41:49 ---> Running in 0c48e4cf8b20 build 24-Feb-2020 17:41:49 Removing intermediate container 0c48e4cf8b20 build 24-Feb-2020 17:41:49 ---> 0096a02ff692 build 24-Feb-2020 17:41:49 Step 11/11 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" build 24-Feb-2020 17:41:49 ---> Running in bd48517f62a5 build 24-Feb-2020 17:41:50 Removing intermediate container bd48517f62a5 build 24-Feb-2020 17:41:50 ---> ea05fdcf1cd7 build 24-Feb-2020 17:41:50 Successfully built ea05fdcf1cd7 build 24-Feb-2020 17:41:50 Successfully tagged clowder/extractors-simple-extractor:onbuild build 24-Feb-2020 17:41:50 Sending build context to Docker daemon 13.31kB build 24-Feb-2020 17:41:50 build 24-Feb-2020 17:41:50 Step 1/11 : ARG PYCLOWDER_PYTHON="" build 24-Feb-2020 17:41:50 Step 2/11 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest build 24-Feb-2020 17:41:50 ---> 3a8959fb9d8d build 24-Feb-2020 17:41:50 Step 3/11 : ENV R_SCRIPT="" R_FUNCTION="" build 24-Feb-2020 17:41:50 ---> Running in cb544ff7f16a build 24-Feb-2020 17:41:50 Removing intermediate container cb544ff7f16a build 24-Feb-2020 17:41:50 ---> f380a61b9a81 build 24-Feb-2020 17:41:50 Step 4/11 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" build 24-Feb-2020 17:41:51 ---> Running in 45daa299670d build 24-Feb-2020 17:41:52 Executing: /tmp/tmp.XoKQ2dMSXj/gpg.1.sh --keyserver build 24-Feb-2020 17:41:52 keyserver.ubuntu.com build 24-Feb-2020 17:41:52 --recv-keys build 24-Feb-2020 17:41:52 E298A3A825C0D65DFD57CBB651716619E084DAB9 build 24-Feb-2020 17:41:52 gpg: requesting key E084DAB9 from hkp server keyserver.ubuntu.com build 24-Feb-2020 17:41:52 gpg: key E084DAB9: public key "Michael Rutter " imported build 24-Feb-2020 17:41:52 gpg: Total number processed: 1 build 24-Feb-2020 17:41:52 gpg: imported: 1 (RSA: 1) build 24-Feb-2020 17:41:56 Reading package lists... build 24-Feb-2020 17:41:56 Building dependency tree... build 24-Feb-2020 17:41:56 Reading state information... build 24-Feb-2020 17:41:57 The following additional packages will be installed: build 24-Feb-2020 17:41:57 autoconf automake autotools-dev binutils bsdmainutils build-essential bzip2 build 24-Feb-2020 17:41:57 ca-certificates cdbs cpp cpp-5 debhelper dh-strip-nondeterminism build 24-Feb-2020 17:41:57 dh-translations dpkg-dev file fontconfig fontconfig-config fonts-dejavu-core build 24-Feb-2020 17:41:57 g++ g++-5 gcc gcc-5 gettext gettext-base gfortran gfortran-5 groff-base build 24-Feb-2020 17:41:57 icu-devtools intltool intltool-debian libarchive-zip-perl libasan2 build 24-Feb-2020 17:41:57 libasprintf0v5 libatomic1 libblas-common libblas-dev libblas3 libbz2-dev build 24-Feb-2020 17:41:57 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcroco3 libcurl3 build 24-Feb-2020 17:41:57 libdatrie1 libdpkg-perl libencode-locale-perl libfile-listing-perl build 24-Feb-2020 17:41:57 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-5-dev build 24-Feb-2020 17:41:57 libgdbm3 libgfortran-5-dev libgfortran3 libglib2.0-0 libgomp1 libgraphite2-3 build 24-Feb-2020 17:41:57 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl build 24-Feb-2020 17:41:57 libhttp-cookies-perl libhttp-date-perl libhttp-message-perl build 24-Feb-2020 17:41:57 libhttp-negotiate-perl libice6 libicu-dev libicu55 libio-html-perl build 24-Feb-2020 17:41:57 libio-socket-ssl-perl libisl15 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 build 24-Feb-2020 17:41:57 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblsan0 build 24-Feb-2020 17:41:57 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic1 build 24-Feb-2020 17:41:57 libmpc3 libmpfr4 libmpx0 libncurses5-dev libnet-http-perl libnet-ssleay-perl build 24-Feb-2020 17:41:57 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils build 24-Feb-2020 17:41:57 libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.22 build 24-Feb-2020 17:41:57 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libpython-stdlib build 24-Feb-2020 17:41:57 libquadmath0 libreadline-dev libreadline6-dev libsigsegv2 libsm6 build 24-Feb-2020 17:41:57 libstdc++-5-dev libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl build 24-Feb-2020 17:41:57 libtinfo-dev libtk8.6 libtsan0 libubsan0 libunistring0 liburi-perl build 24-Feb-2020 17:41:57 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 build 24-Feb-2020 17:41:57 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 build 24-Feb-2020 17:41:57 libxml-parser-perl libxml2 libxmuu1 libxrender1 libxss1 libxt6 build 24-Feb-2020 17:41:57 linux-libc-dev m4 make man-db netbase openssl patch perl perl-modules-5.22 build 24-Feb-2020 17:41:57 pkg-config po-debconf python python-minimal python-pkg-resources build 24-Feb-2020 17:41:57 python-scour python-six tzdata ucf unzip x11-common xauth xdg-utils xz-utils build 24-Feb-2020 17:41:57 zip zlib1g-dev build 24-Feb-2020 17:41:57 Suggested packages: build 24-Feb-2020 17:41:57 autoconf-archive gnu-standards autoconf-doc libtool binutils-doc wamerican build 24-Feb-2020 17:41:57 | wordlist whois vacation bzip2-doc devscripts cpp-doc gcc-5-locales dh-make build 24-Feb-2020 17:41:57 debian-keyring g++-multilib g++-5-multilib gcc-5-doc libstdc++6-5-dbg build 24-Feb-2020 17:41:57 gcc-multilib manpages-dev flex bison gdb gcc-doc gcc-5-multilib libgcc1-dbg build 24-Feb-2020 17:41:57 libgomp1-dbg libitm1-dbg libatomic1-dbg libasan2-dbg liblsan0-dbg build 24-Feb-2020 17:41:57 libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx0-dbg libquadmath0-dbg build 24-Feb-2020 17:41:57 gettext-doc autopoint gfortran-multilib gfortran-doc gfortran-5-multilib build 24-Feb-2020 17:41:57 gfortran-5-doc libgfortran3-dbg groff liblapack-doc-man liblapack-doc build 24-Feb-2020 17:41:57 glibc-doc libdata-dump-perl icu-doc libcrypt-ssleay-perl liblzma-doc build 24-Feb-2020 17:41:57 ncurses-doc readline-doc libstdc++-5-doc tcl8.6 tk8.6 libauthen-ntlm-perl build 24-Feb-2020 17:41:57 make-doc less www-browser ed diffutils-doc perl-doc build 24-Feb-2020 17:41:57 libterm-readline-gnu-perl | libterm-readline-perl-perl libmail-box-perl build 24-Feb-2020 17:41:57 python-doc python-tk python-setuptools python-rsvg python-cairo ess build 24-Feb-2020 17:41:57 r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base build 24-Feb-2020 17:41:57 texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra build 24-Feb-2020 17:41:57 texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo build 24-Feb-2020 17:41:57 gvfs-bin build 24-Feb-2020 17:41:57 Recommended packages: build 24-Feb-2020 17:41:57 fakeroot libalgorithm-merge-perl libasprintf-dev libgettextpo-dev bzip2-doc build 24-Feb-2020 17:41:57 manpages manpages-dev libfile-fcntllock-perl libglib2.0-data build 24-Feb-2020 17:41:57 shared-mime-info xdg-user-dirs libhtml-format-perl libhtml-form-perl build 24-Feb-2020 17:41:57 libhttp-daemon-perl libmailtools-perl xml-core ifupdown rename build 24-Feb-2020 17:41:57 libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl build 24-Feb-2020 17:41:57 libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils build 24-Feb-2020 17:41:57 The following NEW packages will be installed: build 24-Feb-2020 17:41:57 autoconf automake autotools-dev binutils bsdmainutils build-essential bzip2 build 24-Feb-2020 17:41:57 ca-certificates cdbs cpp cpp-5 debhelper dh-strip-nondeterminism build 24-Feb-2020 17:41:57 dh-translations dpkg-dev file fontconfig fontconfig-config fonts-dejavu-core build 24-Feb-2020 17:41:57 g++ g++-5 gcc gcc-5 gettext gettext-base gfortran gfortran-5 groff-base build 24-Feb-2020 17:41:57 icu-devtools intltool intltool-debian libarchive-zip-perl libasan2 build 24-Feb-2020 17:41:57 libasprintf0v5 libatomic1 libblas-common libblas-dev libblas3 libbz2-dev build 24-Feb-2020 17:41:57 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcroco3 libcurl3 build 24-Feb-2020 17:41:57 libdatrie1 libdpkg-perl libencode-locale-perl libfile-listing-perl build 24-Feb-2020 17:41:57 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-5-dev build 24-Feb-2020 17:41:57 libgdbm3 libgfortran-5-dev libgfortran3 libglib2.0-0 libgomp1 libgraphite2-3 build 24-Feb-2020 17:41:57 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl build 24-Feb-2020 17:41:57 libhttp-cookies-perl libhttp-date-perl libhttp-message-perl build 24-Feb-2020 17:41:57 libhttp-negotiate-perl libice6 libicu-dev libicu55 libio-html-perl build 24-Feb-2020 17:41:57 libio-socket-ssl-perl libisl15 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 build 24-Feb-2020 17:41:57 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblsan0 build 24-Feb-2020 17:41:57 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic1 build 24-Feb-2020 17:41:57 libmpc3 libmpfr4 libmpx0 libncurses5-dev libnet-http-perl libnet-ssleay-perl build 24-Feb-2020 17:41:57 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils build 24-Feb-2020 17:41:57 libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.22 build 24-Feb-2020 17:41:57 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libpython-stdlib build 24-Feb-2020 17:41:57 libquadmath0 libreadline-dev libreadline6-dev libsigsegv2 libsm6 build 24-Feb-2020 17:41:57 libstdc++-5-dev libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl build 24-Feb-2020 17:41:57 libtinfo-dev libtk8.6 libtsan0 libubsan0 libunistring0 liburi-perl build 24-Feb-2020 17:41:57 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 build 24-Feb-2020 17:41:57 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 build 24-Feb-2020 17:41:57 libxml-parser-perl libxml2 libxmuu1 libxrender1 libxss1 libxt6 build 24-Feb-2020 17:41:57 linux-libc-dev m4 make man-db netbase openssl patch perl perl-modules-5.22 build 24-Feb-2020 17:41:57 pkg-config po-debconf python python-minimal python-pkg-resources build 24-Feb-2020 17:41:57 python-scour python-six r-base-core r-base-dev tzdata ucf unzip x11-common build 24-Feb-2020 17:41:57 xauth xdg-utils xz-utils zip zlib1g-dev build 24-Feb-2020 17:41:57 0 upgraded, 170 newly installed, 0 to remove and 0 not upgraded. build 24-Feb-2020 17:41:57 Need to get 115 MB of archives. build 24-Feb-2020 17:41:57 After this operation, 409 MB of additional disk space will be used. build 24-Feb-2020 17:41:57 Get:1 http://cran.rstudio.com/bin/linux/ubuntu xenial/ r-base-core 3.4.4-1xenial0 [23.2 MB] build 24-Feb-2020 17:41:57 Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgdbm3 amd64 1.8.3-13.1 [16.9 kB] build 24-Feb-2020 17:41:57 Get:3 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libglib2.0-0 amd64 2.48.2-0ubuntu4.4 [1120 kB] build 24-Feb-2020 17:41:57 Get:4 http://cran.rstudio.com/bin/linux/ubuntu xenial/ r-base-dev 3.4.4-1xenial0 [4416 B] build 24-Feb-2020 17:41:58 Get:5 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] build 24-Feb-2020 17:41:58 Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxdmcp6 amd64 1:1.1.2-1.1 [11.0 kB] build 24-Feb-2020 17:41:58 Get:7 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb1 amd64 1.11.1-1ubuntu1 [40.0 kB] build 24-Feb-2020 17:41:58 Get:8 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-data all 2:1.6.3-1ubuntu2.1 [113 kB] build 24-Feb-2020 17:41:58 Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-6 amd64 2:1.6.3-1ubuntu2.1 [570 kB] build 24-Feb-2020 17:41:58 Get:10 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB] build 24-Feb-2020 17:41:58 Get:11 http://archive.ubuntu.com/ubuntu xenial/main amd64 groff-base amd64 1.22.3-7 [1151 kB] build 24-Feb-2020 17:41:58 Get:12 http://archive.ubuntu.com/ubuntu xenial/main amd64 bsdmainutils amd64 9.0.6ubuntu3 [174 kB] build 24-Feb-2020 17:41:58 Get:13 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpipeline1 amd64 1.4.1-2 [24.6 kB] build 24-Feb-2020 17:41:58 Get:14 http://archive.ubuntu.com/ubuntu xenial/main amd64 man-db amd64 2.7.5-1 [854 kB] build 24-Feb-2020 17:41:58 Get:15 http://archive.ubuntu.com/ubuntu xenial/main amd64 fonts-dejavu-core all 2.35-1 [1039 kB] build 24-Feb-2020 17:41:58 Get:16 http://archive.ubuntu.com/ubuntu xenial/main amd64 ucf all 3.0036 [52.9 kB] build 24-Feb-2020 17:41:58 Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 fontconfig-config all 2.11.94-0ubuntu1.1 [49.9 kB] build 24-Feb-2020 17:41:58 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpng12-0 amd64 1.2.54-1ubuntu1.1 [116 kB] build 24-Feb-2020 17:41:58 Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfreetype6 amd64 2.6.1-0.1ubuntu2.4 [315 kB] build 24-Feb-2020 17:41:58 Get:20 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfontconfig1 amd64 2.11.94-0ubuntu1.1 [131 kB] build 24-Feb-2020 17:41:58 Get:21 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 fontconfig amd64 2.11.94-0ubuntu1.1 [178 kB] build 24-Feb-2020 17:41:58 Get:22 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 x11-common all 1:7.7+13ubuntu3.1 [22.9 kB] build 24-Feb-2020 17:41:58 Get:23 http://archive.ubuntu.com/ubuntu xenial/main amd64 libice6 amd64 2:1.0.9-1 [39.2 kB] build 24-Feb-2020 17:41:58 Get:24 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libjpeg-turbo8 amd64 1.4.2-0ubuntu3.3 [111 kB] build 24-Feb-2020 17:41:59 Get:25 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpcrecpp0v5 amd64 2:8.38-3.1 [15.2 kB] build 24-Feb-2020 17:41:59 Get:26 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsigsegv2 amd64 2.10-4 [14.1 kB] build 24-Feb-2020 17:41:59 Get:27 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB] build 24-Feb-2020 17:41:59 Get:28 http://archive.ubuntu.com/ubuntu xenial/main amd64 libunistring0 amd64 0.9.3-5.2ubuntu1 [279 kB] build 24-Feb-2020 17:41:59 Get:29 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxrender1 amd64 1:0.9.9-0ubuntu1 [18.5 kB] build 24-Feb-2020 17:41:59 Get:30 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxft2 amd64 2.3.2-1 [36.1 kB] build 24-Feb-2020 17:41:59 Get:31 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxss1 amd64 1:1.2.2-1 [8582 B] build 24-Feb-2020 17:41:59 Get:32 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 perl-modules-5.22 all 5.22.1-9ubuntu0.6 [2629 kB] build 24-Feb-2020 17:41:59 Get:33 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libperl5.22 amd64 5.22.1-9ubuntu0.6 [3405 kB] build 24-Feb-2020 17:41:59 Get:34 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 perl amd64 5.22.1-9ubuntu0.6 [237 kB] build 24-Feb-2020 17:41:59 Get:35 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-minimal amd64 2.7.12-1~16.04 [28.1 kB] build 24-Feb-2020 17:41:59 Get:36 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython-stdlib amd64 2.7.12-1~16.04 [7768 B] build 24-Feb-2020 17:41:59 Get:37 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python amd64 2.7.12-1~16.04 [137 kB] build 24-Feb-2020 17:41:59 Get:38 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjbig0 amd64 2.1-3.1 [26.6 kB] build 24-Feb-2020 17:41:59 Get:39 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpfr4 amd64 3.1.4-1 [191 kB] build 24-Feb-2020 17:41:59 Get:40 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpc3 amd64 1.0.3-1 [39.7 kB] build 24-Feb-2020 17:41:59 Get:41 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 tzdata all 2019c-0ubuntu0.16.04 [168 kB] build 24-Feb-2020 17:41:59 Get:42 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 bzip2 amd64 1.0.6-8ubuntu0.2 [32.5 kB] build 24-Feb-2020 17:41:59 Get:43 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmagic1 amd64 1:5.25-2ubuntu1.3 [216 kB] build 24-Feb-2020 17:41:59 Get:44 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 file amd64 1:5.25-2ubuntu1.3 [21.3 kB] build 24-Feb-2020 17:41:59 Get:45 http://archive.ubuntu.com/ubuntu xenial/main amd64 netbase all 5.3 [12.9 kB] build 24-Feb-2020 17:42:00 Get:46 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 openssl amd64 1.0.2g-1ubuntu4.15 [492 kB] build 24-Feb-2020 17:42:00 Get:47 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 ca-certificates all 20170717~16.04.2 [167 kB] build 24-Feb-2020 17:42:00 Get:48 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasprintf0v5 amd64 0.19.7-2ubuntu3.1 [6568 B] build 24-Feb-2020 17:42:00 Get:49 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gettext-base amd64 0.19.7-2ubuntu3.1 [48.0 kB] build 24-Feb-2020 17:42:00 Get:50 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libicu55 amd64 55.1-7ubuntu0.4 [7646 kB] build 24-Feb-2020 17:42:00 Get:51 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libxml2 amd64 2.9.3+dfsg1-1ubuntu0.7 [698 kB] build 24-Feb-2020 17:42:00 Get:52 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxmuu1 amd64 2:1.1.2-2 [9674 B] build 24-Feb-2020 17:42:00 Get:53 http://archive.ubuntu.com/ubuntu xenial/main amd64 xauth amd64 1:1.0.9-1ubuntu2 [22.7 kB] build 24-Feb-2020 17:42:00 Get:54 http://archive.ubuntu.com/ubuntu xenial/main amd64 m4 amd64 1.4.17-5 [195 kB] build 24-Feb-2020 17:42:00 Get:55 http://archive.ubuntu.com/ubuntu xenial/main amd64 autoconf all 2.69-9 [321 kB] build 24-Feb-2020 17:42:00 Get:56 http://archive.ubuntu.com/ubuntu xenial/main amd64 autotools-dev all 20150820.1 [39.8 kB] build 24-Feb-2020 17:42:00 Get:57 http://archive.ubuntu.com/ubuntu xenial/main amd64 automake all 1:1.15-4ubuntu1 [510 kB] build 24-Feb-2020 17:42:00 Get:58 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 binutils amd64 2.26.1-1ubuntu1~16.04.8 [2312 kB] build 24-Feb-2020 17:42:00 Get:59 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc-dev-bin amd64 2.23-0ubuntu11 [68.5 kB] build 24-Feb-2020 17:42:00 Get:60 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 linux-libc-dev amd64 4.4.0-174.204 [859 kB] build 24-Feb-2020 17:42:00 Get:61 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc6-dev amd64 2.23-0ubuntu11 [2086 kB] build 24-Feb-2020 17:42:01 Get:62 http://archive.ubuntu.com/ubuntu xenial/main amd64 libisl15 amd64 0.16.1-1 [524 kB] build 24-Feb-2020 17:42:01 Get:63 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 cpp-5 amd64 5.4.0-6ubuntu1~16.04.12 [7783 kB] build 24-Feb-2020 17:42:01 Get:64 http://archive.ubuntu.com/ubuntu xenial/main amd64 cpp amd64 4:5.3.1-1ubuntu1 [27.7 kB] build 24-Feb-2020 17:42:01 Get:65 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcc1-0 amd64 5.4.0-6ubuntu1~16.04.12 [38.8 kB] build 24-Feb-2020 17:42:01 Get:66 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgomp1 amd64 5.4.0-6ubuntu1~16.04.12 [55.2 kB] build 24-Feb-2020 17:42:01 Get:67 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libitm1 amd64 5.4.0-6ubuntu1~16.04.12 [27.4 kB] build 24-Feb-2020 17:42:01 Get:68 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libatomic1 amd64 5.4.0-6ubuntu1~16.04.12 [8892 B] build 24-Feb-2020 17:42:01 Get:69 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasan2 amd64 5.4.0-6ubuntu1~16.04.12 [265 kB] build 24-Feb-2020 17:42:02 Get:70 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 liblsan0 amd64 5.4.0-6ubuntu1~16.04.12 [105 kB] build 24-Feb-2020 17:42:02 Get:71 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtsan0 amd64 5.4.0-6ubuntu1~16.04.12 [244 kB] build 24-Feb-2020 17:42:02 Get:72 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libubsan0 amd64 5.4.0-6ubuntu1~16.04.12 [95.3 kB] build 24-Feb-2020 17:42:02 Get:73 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcilkrts5 amd64 5.4.0-6ubuntu1~16.04.12 [40.0 kB] build 24-Feb-2020 17:42:02 Get:74 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmpx0 amd64 5.4.0-6ubuntu1~16.04.12 [9762 B] build 24-Feb-2020 17:42:02 Get:75 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libquadmath0 amd64 5.4.0-6ubuntu1~16.04.12 [131 kB] build 24-Feb-2020 17:42:02 Get:76 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgcc-5-dev amd64 5.4.0-6ubuntu1~16.04.12 [2239 kB] build 24-Feb-2020 17:42:02 Get:77 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gcc-5 amd64 5.4.0-6ubuntu1~16.04.12 [8612 kB] build 24-Feb-2020 17:42:02 Get:78 http://archive.ubuntu.com/ubuntu xenial/main amd64 gcc amd64 4:5.3.1-1ubuntu1 [5244 B] build 24-Feb-2020 17:42:02 Get:79 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libstdc++-5-dev amd64 5.4.0-6ubuntu1~16.04.12 [1428 kB] build 24-Feb-2020 17:42:02 Get:80 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 g++-5 amd64 5.4.0-6ubuntu1~16.04.12 [8430 kB] build 24-Feb-2020 17:42:02 Get:81 http://archive.ubuntu.com/ubuntu xenial/main amd64 g++ amd64 4:5.3.1-1ubuntu1 [1504 B] build 24-Feb-2020 17:42:02 Get:82 http://archive.ubuntu.com/ubuntu xenial/main amd64 make amd64 4.1-6 [151 kB] build 24-Feb-2020 17:42:02 Get:83 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdpkg-perl all 1.18.4ubuntu1.6 [195 kB] build 24-Feb-2020 17:42:02 Get:84 http://archive.ubuntu.com/ubuntu xenial/main amd64 xz-utils amd64 5.1.1alpha+20120614-2ubuntu2 [78.8 kB] build 24-Feb-2020 17:42:02 Get:85 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 patch amd64 2.7.5-1ubuntu0.16.04.2 [90.8 kB] build 24-Feb-2020 17:42:03 Get:86 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 dpkg-dev all 1.18.4ubuntu1.6 [584 kB] build 24-Feb-2020 17:42:03 Get:87 http://archive.ubuntu.com/ubuntu xenial/main amd64 build-essential amd64 12.1ubuntu2 [4758 B] build 24-Feb-2020 17:42:03 Get:88 http://archive.ubuntu.com/ubuntu xenial/main amd64 libcroco3 amd64 0.6.11-1 [81.6 kB] build 24-Feb-2020 17:42:03 Get:89 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gettext amd64 0.19.7-2ubuntu3.1 [1082 kB] build 24-Feb-2020 17:42:03 Get:90 http://archive.ubuntu.com/ubuntu xenial/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] build 24-Feb-2020 17:42:03 Get:91 http://archive.ubuntu.com/ubuntu xenial/main amd64 po-debconf all 1.0.19 [234 kB] build 24-Feb-2020 17:42:03 Get:92 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libarchive-zip-perl all 1.56-2ubuntu0.1 [84.7 kB] build 24-Feb-2020 17:42:03 Get:93 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfile-stripnondeterminism-perl all 0.015-1 [10.3 kB] build 24-Feb-2020 17:42:03 Get:94 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] build 24-Feb-2020 17:42:03 Get:95 http://archive.ubuntu.com/ubuntu xenial/main amd64 dh-strip-nondeterminism all 0.015-1 [4864 B] build 24-Feb-2020 17:42:03 Get:96 http://archive.ubuntu.com/ubuntu xenial/main amd64 debhelper all 9.20160115ubuntu3 [739 kB] build 24-Feb-2020 17:42:03 Get:97 http://archive.ubuntu.com/ubuntu xenial/main amd64 liburi-perl all 1.71-1 [76.9 kB] build 24-Feb-2020 17:42:03 Get:98 http://archive.ubuntu.com/ubuntu xenial/main amd64 libencode-locale-perl all 1.05-1 [12.3 kB] build 24-Feb-2020 17:42:03 Get:99 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-date-perl all 6.02-1 [10.4 kB] build 24-Feb-2020 17:42:03 Get:100 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfile-listing-perl all 6.04-1 [9774 B] build 24-Feb-2020 17:42:03 Get:101 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhtml-tagset-perl all 3.20-2 [13.5 kB] build 24-Feb-2020 17:42:03 Get:102 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhtml-parser-perl amd64 3.72-1 [86.1 kB] build 24-Feb-2020 17:42:03 Get:103 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhtml-tree-perl all 5.03-2 [197 kB] build 24-Feb-2020 17:42:03 Get:104 http://archive.ubuntu.com/ubuntu xenial/main amd64 libio-html-perl all 1.001-1 [14.9 kB] build 24-Feb-2020 17:42:04 Get:105 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblwp-mediatypes-perl all 6.02-1 [21.7 kB] build 24-Feb-2020 17:42:04 Get:106 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-message-perl all 6.11-1 [74.3 kB] build 24-Feb-2020 17:42:04 Get:107 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-cookies-perl all 6.01-1 [17.2 kB] build 24-Feb-2020 17:42:04 Get:108 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-negotiate-perl all 6.00-2 [13.4 kB] build 24-Feb-2020 17:42:04 Get:109 http://archive.ubuntu.com/ubuntu xenial/main amd64 libnet-ssleay-perl amd64 1.72-1build1 [259 kB] build 24-Feb-2020 17:42:04 Get:110 http://archive.ubuntu.com/ubuntu xenial/main amd64 libio-socket-ssl-perl all 2.024-1 [159 kB] build 24-Feb-2020 17:42:04 Get:111 http://archive.ubuntu.com/ubuntu xenial/main amd64 libnet-http-perl all 6.09-1 [24.0 kB] build 24-Feb-2020 17:42:04 Get:112 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblwp-protocol-https-perl all 6.06-2 [8682 B] build 24-Feb-2020 17:42:04 Get:113 http://archive.ubuntu.com/ubuntu xenial/main amd64 libwww-robotrules-perl all 6.01-1 [14.1 kB] build 24-Feb-2020 17:42:04 Get:114 http://archive.ubuntu.com/ubuntu xenial/main amd64 libwww-perl all 6.15-1 [146 kB] build 24-Feb-2020 17:42:04 Get:115 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxml-parser-perl amd64 2.44-1build1 [200 kB] build 24-Feb-2020 17:42:04 Get:116 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 intltool all 0.51.0-2ubuntu1.16.04.1 [45.0 kB] build 24-Feb-2020 17:42:04 Get:117 http://archive.ubuntu.com/ubuntu xenial/main amd64 dh-translations all 129 [22.1 kB] build 24-Feb-2020 17:42:04 Get:118 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-six all 1.10.0-3 [10.9 kB] build 24-Feb-2020 17:42:04 Get:119 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-pkg-resources all 20.7.0-1 [108 kB] build 24-Feb-2020 17:42:04 Get:120 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-scour all 0.32-1 [42.7 kB] build 24-Feb-2020 17:42:04 Get:121 http://archive.ubuntu.com/ubuntu xenial/main amd64 cdbs all 0.4.130ubuntu2 [42.8 kB] build 24-Feb-2020 17:42:04 Get:122 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran3 amd64 5.4.0-6ubuntu1~16.04.12 [260 kB] build 24-Feb-2020 17:42:04 Get:123 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran-5-dev amd64 5.4.0-6ubuntu1~16.04.12 [291 kB] build 24-Feb-2020 17:42:05 Get:124 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gfortran-5 amd64 5.4.0-6ubuntu1~16.04.12 [8158 kB] build 24-Feb-2020 17:42:05 Get:125 http://archive.ubuntu.com/ubuntu xenial/main amd64 gfortran amd64 4:5.3.1-1ubuntu1 [1288 B] build 24-Feb-2020 17:42:05 Get:126 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 icu-devtools amd64 55.1-7ubuntu0.4 [166 kB] build 24-Feb-2020 17:42:05 Get:127 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas-common amd64 3.6.0-2ubuntu2 [5342 B] build 24-Feb-2020 17:42:05 Get:128 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas3 amd64 3.6.0-2ubuntu2 [147 kB] build 24-Feb-2020 17:42:05 Get:129 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas-dev amd64 3.6.0-2ubuntu2 [153 kB] build 24-Feb-2020 17:42:06 Get:130 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libbz2-dev amd64 1.0.6-8ubuntu0.2 [29.0 kB] build 24-Feb-2020 17:42:06 Get:131 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpixman-1-0 amd64 0.33.6-1 [231 kB] build 24-Feb-2020 17:42:06 Get:132 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-render0 amd64 1.11.1-1ubuntu1 [11.4 kB] build 24-Feb-2020 17:42:06 Get:133 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-shm0 amd64 1.11.1-1ubuntu1 [5588 B] build 24-Feb-2020 17:42:06 Get:134 http://archive.ubuntu.com/ubuntu xenial/main amd64 libcairo2 amd64 1.14.6-1 [555 kB] build 24-Feb-2020 17:42:06 Get:135 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcurl3 amd64 7.47.0-1ubuntu2.14 [186 kB] build 24-Feb-2020 17:42:06 Get:136 http://archive.ubuntu.com/ubuntu xenial/main amd64 libdatrie1 amd64 0.2.10-2 [17.3 kB] build 24-Feb-2020 17:42:06 Get:137 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgraphite2-3 amd64 1.3.10-0ubuntu0.16.04.1 [71.7 kB] build 24-Feb-2020 17:42:06 Get:138 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libharfbuzz0b amd64 1.0.1-1ubuntu0.1 [140 kB] build 24-Feb-2020 17:42:06 Get:139 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libicu-dev amd64 55.1-7ubuntu0.4 [8566 kB] build 24-Feb-2020 17:42:06 Get:140 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libjpeg-turbo8-dev amd64 1.4.2-0ubuntu3.3 [255 kB] build 24-Feb-2020 17:42:06 Get:141 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] build 24-Feb-2020 17:42:06 Get:142 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1552 B] build 24-Feb-2020 17:42:06 Get:143 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B] build 24-Feb-2020 17:42:06 Get:144 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblapack3 amd64 3.6.0-2ubuntu2 [1938 kB] build 24-Feb-2020 17:42:06 Get:145 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblapack-dev amd64 3.6.0-2ubuntu2 [1948 kB] build 24-Feb-2020 17:42:06 Get:146 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtinfo-dev amd64 6.0+20160213-1ubuntu1 [77.4 kB] build 24-Feb-2020 17:42:06 Get:147 http://archive.ubuntu.com/ubuntu xenial/main amd64 libncurses5-dev amd64 6.0+20160213-1ubuntu1 [175 kB] build 24-Feb-2020 17:42:06 Get:148 http://archive.ubuntu.com/ubuntu xenial/main amd64 libthai-data all 0.1.24-2 [131 kB] build 24-Feb-2020 17:42:06 Get:149 http://archive.ubuntu.com/ubuntu xenial/main amd64 libthai0 amd64 0.1.24-2 [17.3 kB] build 24-Feb-2020 17:42:07 Get:150 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpango-1.0-0 amd64 1.38.1-1 [148 kB] build 24-Feb-2020 17:42:07 Get:151 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpangoft2-1.0-0 amd64 1.38.1-1 [33.3 kB] build 24-Feb-2020 17:42:07 Get:152 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpangocairo-1.0-0 amd64 1.38.1-1 [20.5 kB] build 24-Feb-2020 17:42:07 Get:153 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpaper1 amd64 1.1.24+nmu4ubuntu1 [13.7 kB] build 24-Feb-2020 17:42:07 Get:154 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpaper-utils amd64 1.1.24+nmu4ubuntu1 [8276 B] build 24-Feb-2020 17:42:07 Get:155 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpcre16-3 amd64 2:8.38-3.1 [144 kB] build 24-Feb-2020 17:42:07 Get:156 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpcre32-3 amd64 2:8.38-3.1 [136 kB] build 24-Feb-2020 17:42:07 Get:157 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpcre3-dev amd64 2:8.38-3.1 [525 kB] build 24-Feb-2020 17:42:07 Get:158 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-2ubuntu4.3 [167 kB] build 24-Feb-2020 17:42:07 Get:159 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpng12-dev amd64 1.2.54-1ubuntu1.1 [183 kB] build 24-Feb-2020 17:42:07 Get:160 http://archive.ubuntu.com/ubuntu xenial/main amd64 libreadline6-dev amd64 6.3-8ubuntu2 [124 kB] build 24-Feb-2020 17:42:07 Get:161 http://archive.ubuntu.com/ubuntu xenial/main amd64 libreadline-dev amd64 6.3-8ubuntu2 [992 B] build 24-Feb-2020 17:42:07 Get:162 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtcl8.6 amd64 8.6.5+dfsg-2 [875 kB] build 24-Feb-2020 17:42:07 Get:163 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtiff5 amd64 4.0.6-1ubuntu0.7 [149 kB] build 24-Feb-2020 17:42:07 Get:164 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtk8.6 amd64 8.6.5-1 [693 kB] build 24-Feb-2020 17:42:07 Get:165 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxt6 amd64 1:1.1.5-0ubuntu1 [160 kB] build 24-Feb-2020 17:42:07 Get:166 http://archive.ubuntu.com/ubuntu xenial/main amd64 pkg-config amd64 0.29.1-0ubuntu1 [45.0 kB] build 24-Feb-2020 17:42:07 Get:167 http://archive.ubuntu.com/ubuntu xenial/main amd64 zip amd64 3.0-11 [158 kB] build 24-Feb-2020 17:42:07 Get:168 http://archive.ubuntu.com/ubuntu xenial/main amd64 unzip amd64 6.0-20ubuntu1 [158 kB] build 24-Feb-2020 17:42:07 Get:169 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 xdg-utils all 1.1.1-1ubuntu1.16.04.3 [59.6 kB] build 24-Feb-2020 17:42:07 Get:170 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblzma-dev amd64 5.1.1alpha+20120614-2ubuntu2 [137 kB] build 24-Feb-2020 17:42:08 debconf: delaying package configuration, since apt-utils is not installed build 24-Feb-2020 17:42:08 Fetched 115 MB in 10s (10.5 MB/s) build 24-Feb-2020 17:42:08 Selecting previously unselected package libgdbm3:amd64. build 24-Feb-2020 17:42:08 (Reading database ... build 24-Feb-2020 17:42:08 (Reading database ... 5% build 24-Feb-2020 17:42:08 (Reading database ... 10% build 24-Feb-2020 17:42:08 (Reading database ... 15% build 24-Feb-2020 17:42:08 (Reading database ... 20% build 24-Feb-2020 17:42:08 (Reading database ... 25% build 24-Feb-2020 17:42:08 (Reading database ... 30% build 24-Feb-2020 17:42:08 (Reading database ... 35% build 24-Feb-2020 17:42:08 (Reading database ... 40% build 24-Feb-2020 17:42:08 (Reading database ... 45% build 24-Feb-2020 17:42:08 (Reading database ... 50% build 24-Feb-2020 17:42:08 (Reading database ... 55% build 24-Feb-2020 17:42:08 (Reading database ... 60% build 24-Feb-2020 17:42:08 (Reading database ... 65% build 24-Feb-2020 17:42:08 (Reading database ... 70% build 24-Feb-2020 17:42:08 (Reading database ... 75% build 24-Feb-2020 17:42:08 (Reading database ... 80% build 24-Feb-2020 17:42:08 (Reading database ... 85% build 24-Feb-2020 17:42:08 (Reading database ... 90% build 24-Feb-2020 17:42:08 (Reading database ... 95% build 24-Feb-2020 17:42:08 (Reading database ... 100% build 24-Feb-2020 17:42:08 (Reading database ... 5747 files and directories currently installed.) build 24-Feb-2020 17:42:08 Preparing to unpack .../libgdbm3_1.8.3-13.1_amd64.deb ... build 24-Feb-2020 17:42:08 Unpacking libgdbm3:amd64 (1.8.3-13.1) ... build 24-Feb-2020 17:42:09 Selecting previously unselected package libglib2.0-0:amd64. build 24-Feb-2020 17:42:09 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build 24-Feb-2020 17:43:36 Selecting previously unselected package zlib1g-dev:amd64. build 24-Feb-2020 17:43:36 Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2ubuntu4.3_amd64.deb ... build 24-Feb-2020 17:43:36 Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4.3) ... build 24-Feb-2020 17:43:37 Selecting previously unselected package libpng12-dev:amd64. build 24-Feb-2020 17:43:37 Preparing to unpack .../libpng12-dev_1.2.54-1ubuntu1.1_amd64.deb ... build 24-Feb-2020 17:43:37 Unpacking libpng12-dev:amd64 (1.2.54-1ubuntu1.1) ... build 24-Feb-2020 17:43:37 Selecting previously unselected package libreadline6-dev:amd64. build 24-Feb-2020 17:43:37 Preparing to unpack .../libreadline6-dev_6.3-8ubuntu2_amd64.deb ... build 24-Feb-2020 17:43:37 Unpacking libreadline6-dev:amd64 (6.3-8ubuntu2) ... build 24-Feb-2020 17:43:38 Selecting previously unselected package libreadline-dev:amd64. build 24-Feb-2020 17:43:38 Preparing to unpack .../libreadline-dev_6.3-8ubuntu2_amd64.deb ... build 24-Feb-2020 17:43:38 Unpacking libreadline-dev:amd64 (6.3-8ubuntu2) ... build 24-Feb-2020 17:43:38 Selecting previously unselected package libtcl8.6:amd64. build 24-Feb-2020 17:43:38 Preparing to unpack .../libtcl8.6_8.6.5+dfsg-2_amd64.deb ... build 24-Feb-2020 17:43:38 Unpacking libtcl8.6:amd64 (8.6.5+dfsg-2) ... build 24-Feb-2020 17:43:39 Selecting previously unselected package libtiff5:amd64. build 24-Feb-2020 17:43:39 Preparing to unpack .../libtiff5_4.0.6-1ubuntu0.7_amd64.deb ... build 24-Feb-2020 17:43:39 Unpacking libtiff5:amd64 (4.0.6-1ubuntu0.7) ... build 24-Feb-2020 17:43:39 Selecting previously unselected package libtk8.6:amd64. build 24-Feb-2020 17:43:39 Preparing to unpack .../libtk8.6_8.6.5-1_amd64.deb ... build 24-Feb-2020 17:43:39 Unpacking libtk8.6:amd64 (8.6.5-1) ... build 24-Feb-2020 17:43:40 Selecting previously unselected package libxt6:amd64. build 24-Feb-2020 17:43:40 Preparing to unpack .../libxt6_1%3a1.1.5-0ubuntu1_amd64.deb ... build 24-Feb-2020 17:43:40 Unpacking libxt6:amd64 (1:1.1.5-0ubuntu1) ... build 24-Feb-2020 17:43:40 Selecting previously unselected package pkg-config. build 24-Feb-2020 17:43:40 Preparing to unpack .../pkg-config_0.29.1-0ubuntu1_amd64.deb ... build 24-Feb-2020 17:43:40 Unpacking pkg-config (0.29.1-0ubuntu1) ... build 24-Feb-2020 17:43:41 Selecting previously unselected package zip. build 24-Feb-2020 17:43:41 Preparing to unpack .../archives/zip_3.0-11_amd64.deb ... build 24-Feb-2020 17:43:41 Unpacking zip (3.0-11) ... build 24-Feb-2020 17:43:41 Selecting previously unselected package unzip. build 24-Feb-2020 17:43:41 Preparing to unpack .../unzip_6.0-20ubuntu1_amd64.deb ... build 24-Feb-2020 17:43:41 Unpacking unzip (6.0-20ubuntu1) ... build 24-Feb-2020 17:43:41 Selecting previously unselected package xdg-utils. build 24-Feb-2020 17:43:41 Preparing to unpack .../xdg-utils_1.1.1-1ubuntu1.16.04.3_all.deb ... build 24-Feb-2020 17:43:42 Unpacking xdg-utils (1.1.1-1ubuntu1.16.04.3) ... build 24-Feb-2020 17:43:42 Selecting previously unselected package r-base-core. build 24-Feb-2020 17:43:42 Preparing to unpack .../r-base-core_3.4.4-1xenial0_amd64.deb ... build 24-Feb-2020 17:43:42 Unpacking r-base-core (3.4.4-1xenial0) ... build 24-Feb-2020 17:43:45 Selecting previously unselected package liblzma-dev:amd64. build 24-Feb-2020 17:43:45 Preparing to unpack .../liblzma-dev_5.1.1alpha+20120614-2ubuntu2_amd64.deb ... build 24-Feb-2020 17:43:45 Unpacking liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... build 24-Feb-2020 17:43:46 Selecting previously unselected package r-base-dev. build 24-Feb-2020 17:43:46 Preparing to unpack .../r-base-dev_3.4.4-1xenial0_all.deb ... build 24-Feb-2020 17:43:46 Unpacking r-base-dev (3.4.4-1xenial0) ... build 24-Feb-2020 17:43:46 Processing triggers for libc-bin (2.23-0ubuntu11) ... build 24-Feb-2020 17:43:46 Processing triggers for mime-support (3.59ubuntu1) ... build 24-Feb-2020 17:43:46 Setting up libgdbm3:amd64 (1.8.3-13.1) ... build 24-Feb-2020 17:43:47 Setting up libglib2.0-0:amd64 (2.48.2-0ubuntu4.4) ... build 24-Feb-2020 17:43:47 No schema files found: doing nothing. build 24-Feb-2020 17:43:47 Setting up libxau6:amd64 (1:1.0.8-1) ... build 24-Feb-2020 17:43:47 Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... build 24-Feb-2020 17:43:47 Setting up libxcb1:amd64 (1.11.1-1ubuntu1) ... build 24-Feb-2020 17:43:47 Setting up libx11-data (2:1.6.3-1ubuntu2.1) ... build 24-Feb-2020 17:43:47 Setting up libx11-6:amd64 (2:1.6.3-1ubuntu2.1) ... build 24-Feb-2020 17:43:48 Setting up libxext6:amd64 (2:1.3.3-1) ... build 24-Feb-2020 17:43:48 Setting up groff-base (1.22.3-7) ... build 24-Feb-2020 17:43:48 Setting up bsdmainutils (9.0.6ubuntu3) ... build 24-Feb-2020 17:43:48 update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode build 24-Feb-2020 17:43:48 update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode build 24-Feb-2020 17:43:48 Setting up libpipeline1:amd64 (1.4.1-2) ... build 24-Feb-2020 17:43:48 Setting up man-db (2.7.5-1) ... build 24-Feb-2020 17:43:49 debconf: unable to initialize frontend: Dialog build 24-Feb-2020 17:43:49 debconf: (TERM is not set, so the dialog frontend is not usable.) build 24-Feb-2020 17:43:49 debconf: falling back to frontend: Readline build 24-Feb-2020 17:43:49 Building database of manual pages ... build 24-Feb-2020 17:43:57 Setting up fonts-dejavu-core (2.35-1) ... build 24-Feb-2020 17:43:58 Setting up ucf (3.0036) ... build 24-Feb-2020 17:43:58 debconf: unable to initialize frontend: Dialog build 24-Feb-2020 17:43:58 debconf: (TERM is not set, so the dialog frontend is not usable.) build 24-Feb-2020 17:43:58 debconf: falling back to frontend: Readline build 24-Feb-2020 17:43:58 Setting up fontconfig-config (2.11.94-0ubuntu1.1) ... build 24-Feb-2020 17:44:00 Setting up libpng12-0:amd64 (1.2.54-1ubuntu1.1) ... build 24-Feb-2020 17:44:00 Setting up libfreetype6:amd64 (2.6.1-0.1ubuntu2.4) ... build 24-Feb-2020 17:44:00 Setting up libfontconfig1:amd64 (2.11.94-0ubuntu1.1) ... build 24-Feb-2020 17:44:00 Setting up fontconfig (2.11.94-0ubuntu1.1) ... build 24-Feb-2020 17:44:03 Regenerating fonts cache... done. build 24-Feb-2020 17:44:03 Setting up x11-common (1:7.7+13ubuntu3.1) ... build 24-Feb-2020 17:44:04 debconf: unable to initialize frontend: Dialog build 24-Feb-2020 17:44:04 debconf: (TERM is not set, so the dialog frontend is not usable.) build 24-Feb-2020 17:44:04 debconf: falling back to frontend: Readline build 24-Feb-2020 17:44:04 update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults build 24-Feb-2020 17:44:04 invoke-rc.d: could not determine current runlevel build 24-Feb-2020 17:44:04 invoke-rc.d: policy-rc.d denied execution of start. build 24-Feb-2020 17:44:04 Setting up libice6:amd64 (2:1.0.9-1) ... build 24-Feb-2020 17:44:04 Setting up libjpeg-turbo8:amd64 (1.4.2-0ubuntu3.3) ... build 24-Feb-2020 17:44:04 Setting up libpcrecpp0v5:amd64 (2:8.38-3.1) ... build 24-Feb-2020 17:44:04 Setting up libsigsegv2:amd64 (2.10-4) ... build 24-Feb-2020 17:44:04 Setting up libsm6:amd64 (2:1.2.2-1) ... build 24-Feb-2020 17:44:05 Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... build 24-Feb-2020 17:44:05 Setting up libxrender1:amd64 (1:0.9.9-0ubuntu1) ... build 24-Feb-2020 17:44:05 Setting up libxft2:amd64 (2.3.2-1) ... build 24-Feb-2020 17:44:05 Setting up libxss1:amd64 (1:1.2.2-1) ... build 24-Feb-2020 17:44:05 Setting up perl-modules-5.22 (5.22.1-9ubuntu0.6) ... build 24-Feb-2020 17:44:06 Setting up libperl5.22:amd64 (5.22.1-9ubuntu0.6) ... build 24-Feb-2020 17:44:06 Setting up perl (5.22.1-9ubuntu0.6) ... build 24-Feb-2020 17:44:06 update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode build 24-Feb-2020 17:44:06 Setting up libpython-stdlib:amd64 (2.7.12-1~16.04) ... build 24-Feb-2020 17:44:07 Setting up python (2.7.12-1~16.04) ... build 24-Feb-2020 17:44:07 Setting up libjbig0:amd64 (2.1-3.1) ... build 24-Feb-2020 17:44:07 Setting up libmpfr4:amd64 (3.1.4-1) ... build 24-Feb-2020 17:44:07 Setting up libmpc3:amd64 (1.0.3-1) ... build 24-Feb-2020 17:44:07 Setting up tzdata (2019c-0ubuntu0.16.04) ... build 24-Feb-2020 17:44:07 debconf: unable to initialize frontend: Dialog build 24-Feb-2020 17:44:07 debconf: (TERM is not set, so the dialog frontend is not usable.) build 24-Feb-2020 17:44:07 debconf: falling back to frontend: Readline build 24-Feb-2020 17:44:07 build 24-Feb-2020 17:44:07 Current default time zone: 'Etc/UTC' build 24-Feb-2020 17:44:07 Local time is now: Mon Feb 24 23:44:07 UTC 2020. build 24-Feb-2020 17:44:07 Universal Time is now: Mon Feb 24 23:44:07 UTC 2020. build 24-Feb-2020 17:44:07 Run 'dpkg-reconfigure tzdata' if you wish to change it. build 24-Feb-2020 17:44:07 build 24-Feb-2020 17:44:08 Setting up bzip2 (1.0.6-8ubuntu0.2) ... build 24-Feb-2020 17:44:08 Setting up libmagic1:amd64 (1:5.25-2ubuntu1.3) ... build 24-Feb-2020 17:44:08 Setting up file (1:5.25-2ubuntu1.3) ... build 24-Feb-2020 17:44:08 Setting up netbase (5.3) ... build 24-Feb-2020 17:44:09 Setting up openssl (1.0.2g-1ubuntu4.15) ... build 24-Feb-2020 17:44:09 Setting up ca-certificates (20170717~16.04.2) ... build 24-Feb-2020 17:44:09 debconf: unable to initialize frontend: Dialog build 24-Feb-2020 17:44:09 debconf: (TERM is not set, so the dialog frontend is not usable.) build 24-Feb-2020 17:44:09 debconf: falling back to frontend: Readline build 24-Feb-2020 17:44:10 Setting up libasprintf0v5:amd64 (0.19.7-2ubuntu3.1) ... build 24-Feb-2020 17:44:10 Setting up gettext-base (0.19.7-2ubuntu3.1) ... build 24-Feb-2020 17:44:10 Setting up libicu55:amd64 (55.1-7ubuntu0.4) ... build 24-Feb-2020 17:44:10 Setting up libxml2:amd64 (2.9.3+dfsg1-1ubuntu0.7) ... build 24-Feb-2020 17:44:10 Setting up libxmuu1:amd64 (2:1.1.2-2) ... build 24-Feb-2020 17:44:11 Setting up xauth (1:1.0.9-1ubuntu2) ... build 24-Feb-2020 17:44:11 Setting up m4 (1.4.17-5) ... build 24-Feb-2020 17:44:11 Setting up autoconf (2.69-9) ... build 24-Feb-2020 17:44:12 Setting up autotools-dev (20150820.1) ... build 24-Feb-2020 17:44:12 Setting up automake (1:1.15-4ubuntu1) ... build 24-Feb-2020 17:44:12 update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode build 24-Feb-2020 17:44:12 Setting up binutils (2.26.1-1ubuntu1~16.04.8) ... build 24-Feb-2020 17:44:12 Setting up libc-dev-bin (2.23-0ubuntu11) ... build 24-Feb-2020 17:44:12 Setting up linux-libc-dev:amd64 (4.4.0-174.204) ... build 24-Feb-2020 17:44:12 Setting up libc6-dev:amd64 (2.23-0ubuntu11) ... build 24-Feb-2020 17:44:13 Setting up libisl15:amd64 (0.16.1-1) ... build 24-Feb-2020 17:44:13 Setting up cpp-5 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:44:13 Setting up cpp (4:5.3.1-1ubuntu1) ... build 24-Feb-2020 17:44:13 Setting up libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:44:13 Setting up libgomp1:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:44:13 Setting up libitm1:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:44:14 Setting up libatomic1:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:44:14 Setting up libasan2:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:44:14 Setting up liblsan0:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:44:14 Setting up libtsan0:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:44:14 Setting up libubsan0:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:44:15 Setting up libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:44:15 Setting up libmpx0:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:44:15 Setting up libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:44:16 Setting up libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:44:16 Setting up gcc-5 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:44:16 Setting up gcc (4:5.3.1-1ubuntu1) ... build 24-Feb-2020 17:44:16 Setting up libstdc++-5-dev:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:44:16 Setting up g++-5 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:44:16 Setting up g++ (4:5.3.1-1ubuntu1) ... build 24-Feb-2020 17:44:16 update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode build 24-Feb-2020 17:44:17 Setting up make (4.1-6) ... build 24-Feb-2020 17:44:17 Setting up libdpkg-perl (1.18.4ubuntu1.6) ... build 24-Feb-2020 17:44:17 Setting up xz-utils (5.1.1alpha+20120614-2ubuntu2) ... build 24-Feb-2020 17:44:17 update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode build 24-Feb-2020 17:44:17 Setting up patch (2.7.5-1ubuntu0.16.04.2) ... build 24-Feb-2020 17:44:17 Setting up dpkg-dev (1.18.4ubuntu1.6) ... build 24-Feb-2020 17:44:17 Setting up build-essential (12.1ubuntu2) ... build 24-Feb-2020 17:44:18 Setting up libcroco3:amd64 (0.6.11-1) ... build 24-Feb-2020 17:44:18 Setting up gettext (0.19.7-2ubuntu3.1) ... build 24-Feb-2020 17:44:18 Setting up intltool-debian (0.35.0+20060710.4) ... build 24-Feb-2020 17:44:18 Setting up po-debconf (1.0.19) ... build 24-Feb-2020 17:44:18 Setting up libarchive-zip-perl (1.56-2ubuntu0.1) ... build 24-Feb-2020 17:44:18 Setting up libfile-stripnondeterminism-perl (0.015-1) ... build 24-Feb-2020 17:44:18 Setting up libtimedate-perl (2.3000-2) ... build 24-Feb-2020 17:44:18 Setting up liburi-perl (1.71-1) ... build 24-Feb-2020 17:44:19 Setting up libencode-locale-perl (1.05-1) ... build 24-Feb-2020 17:44:19 Setting up libhttp-date-perl (6.02-1) ... build 24-Feb-2020 17:44:19 Setting up libfile-listing-perl (6.04-1) ... build 24-Feb-2020 17:44:19 Setting up libhtml-tagset-perl (3.20-2) ... build 24-Feb-2020 17:44:19 Setting up libhtml-parser-perl (3.72-1) ... build 24-Feb-2020 17:44:19 Setting up libhtml-tree-perl (5.03-2) ... build 24-Feb-2020 17:44:20 Setting up libio-html-perl (1.001-1) ... build 24-Feb-2020 17:44:20 Setting up liblwp-mediatypes-perl (6.02-1) ... build 24-Feb-2020 17:44:20 Setting up libhttp-message-perl (6.11-1) ... build 24-Feb-2020 17:44:20 Setting up libhttp-cookies-perl (6.01-1) ... build 24-Feb-2020 17:44:21 Setting up libhttp-negotiate-perl (6.00-2) ... build 24-Feb-2020 17:44:21 Setting up libnet-ssleay-perl (1.72-1build1) ... build 24-Feb-2020 17:44:21 Setting up libio-socket-ssl-perl (2.024-1) ... build 24-Feb-2020 17:44:21 Setting up libnet-http-perl (6.09-1) ... build 24-Feb-2020 17:44:21 Setting up libwww-robotrules-perl (6.01-1) ... build 24-Feb-2020 17:44:22 Setting up python-six (1.10.0-3) ... build 24-Feb-2020 17:44:23 Setting up python-pkg-resources (20.7.0-1) ... build 24-Feb-2020 17:44:24 Setting up python-scour (0.32-1) ... build 24-Feb-2020 17:44:25 Setting up libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:44:25 Setting up libgfortran-5-dev:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:44:25 Setting up gfortran-5 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:44:25 Setting up gfortran (4:5.3.1-1ubuntu1) ... build 24-Feb-2020 17:44:25 update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode build 24-Feb-2020 17:44:25 update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode build 24-Feb-2020 17:44:25 Setting up icu-devtools (55.1-7ubuntu0.4) ... build 24-Feb-2020 17:44:25 Setting up libblas-common (3.6.0-2ubuntu2) ... build 24-Feb-2020 17:44:26 Setting up libblas3 (3.6.0-2ubuntu2) ... build 24-Feb-2020 17:44:26 update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode build 24-Feb-2020 17:44:26 Setting up libblas-dev (3.6.0-2ubuntu2) ... build 24-Feb-2020 17:44:26 update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode build 24-Feb-2020 17:44:26 Setting up libbz2-dev:amd64 (1.0.6-8ubuntu0.2) ... build 24-Feb-2020 17:44:27 Setting up libpixman-1-0:amd64 (0.33.6-1) ... build 24-Feb-2020 17:44:27 Setting up libxcb-render0:amd64 (1.11.1-1ubuntu1) ... build 24-Feb-2020 17:44:27 Setting up libxcb-shm0:amd64 (1.11.1-1ubuntu1) ... build 24-Feb-2020 17:44:27 Setting up libcairo2:amd64 (1.14.6-1) ... build 24-Feb-2020 17:44:28 Setting up libcurl3:amd64 (7.47.0-1ubuntu2.14) ... build 24-Feb-2020 17:44:28 Setting up libdatrie1:amd64 (0.2.10-2) ... build 24-Feb-2020 17:44:28 Setting up libgraphite2-3:amd64 (1.3.10-0ubuntu0.16.04.1) ... build 24-Feb-2020 17:44:28 Setting up libharfbuzz0b:amd64 (1.0.1-1ubuntu0.1) ... build 24-Feb-2020 17:44:29 Setting up libicu-dev:amd64 (55.1-7ubuntu0.4) ... build 24-Feb-2020 17:44:29 Setting up libjpeg-turbo8-dev:amd64 (1.4.2-0ubuntu3.3) ... build 24-Feb-2020 17:44:29 Setting up libjpeg8:amd64 (8c-2ubuntu8) ... build 24-Feb-2020 17:44:29 Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... build 24-Feb-2020 17:44:29 Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... build 24-Feb-2020 17:44:30 Setting up liblapack3 (3.6.0-2ubuntu2) ... build 24-Feb-2020 17:44:30 update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode build 24-Feb-2020 17:44:30 Setting up liblapack-dev (3.6.0-2ubuntu2) ... build 24-Feb-2020 17:44:30 update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode build 24-Feb-2020 17:44:30 Setting up libtinfo-dev:amd64 (6.0+20160213-1ubuntu1) ... build 24-Feb-2020 17:44:30 Setting up libncurses5-dev:amd64 (6.0+20160213-1ubuntu1) ... build 24-Feb-2020 17:44:30 Setting up libthai-data (0.1.24-2) ... build 24-Feb-2020 17:44:30 Setting up libthai0:amd64 (0.1.24-2) ... build 24-Feb-2020 17:44:31 Setting up libpango-1.0-0:amd64 (1.38.1-1) ... build 24-Feb-2020 17:44:31 Setting up libpangoft2-1.0-0:amd64 (1.38.1-1) ... build 24-Feb-2020 17:44:31 Setting up libpangocairo-1.0-0:amd64 (1.38.1-1) ... build 24-Feb-2020 17:44:31 Setting up libpaper1:amd64 (1.1.24+nmu4ubuntu1) ... build 24-Feb-2020 17:44:31 debconf: unable to initialize frontend: Dialog build 24-Feb-2020 17:44:31 debconf: (TERM is not set, so the dialog frontend is not usable.) build 24-Feb-2020 17:44:31 debconf: falling back to frontend: Readline build 24-Feb-2020 17:44:31 build 24-Feb-2020 17:44:31 Creating config file /etc/papersize with new version build 24-Feb-2020 17:44:31 Setting up libpaper-utils (1.1.24+nmu4ubuntu1) ... build 24-Feb-2020 17:44:32 Setting up libpcre16-3:amd64 (2:8.38-3.1) ... build 24-Feb-2020 17:44:32 Setting up libpcre32-3:amd64 (2:8.38-3.1) ... build 24-Feb-2020 17:44:32 Setting up libpcre3-dev:amd64 (2:8.38-3.1) ... build 24-Feb-2020 17:44:33 Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4.3) ... build 24-Feb-2020 17:44:33 Setting up libpng12-dev:amd64 (1.2.54-1ubuntu1.1) ... build 24-Feb-2020 17:44:33 Setting up libreadline6-dev:amd64 (6.3-8ubuntu2) ... build 24-Feb-2020 17:44:33 Setting up libreadline-dev:amd64 (6.3-8ubuntu2) ... build 24-Feb-2020 17:44:33 Setting up libtcl8.6:amd64 (8.6.5+dfsg-2) ... build 24-Feb-2020 17:44:34 Setting up libtiff5:amd64 (4.0.6-1ubuntu0.7) ... build 24-Feb-2020 17:44:34 Setting up libtk8.6:amd64 (8.6.5-1) ... build 24-Feb-2020 17:44:34 Setting up libxt6:amd64 (1:1.1.5-0ubuntu1) ... build 24-Feb-2020 17:44:34 Setting up pkg-config (0.29.1-0ubuntu1) ... build 24-Feb-2020 17:44:35 Setting up zip (3.0-11) ... build 24-Feb-2020 17:44:35 Setting up unzip (6.0-20ubuntu1) ... build 24-Feb-2020 17:44:35 Setting up xdg-utils (1.1.1-1ubuntu1.16.04.3) ... build 24-Feb-2020 17:44:36 Setting up r-base-core (3.4.4-1xenial0) ... build 24-Feb-2020 17:44:36 debconf: unable to initialize frontend: Dialog build 24-Feb-2020 17:44:36 debconf: (TERM is not set, so the dialog frontend is not usable.) build 24-Feb-2020 17:44:36 debconf: falling back to frontend: Readline build 24-Feb-2020 17:44:36 build 24-Feb-2020 17:44:36 Creating config file /etc/R/Renviron with new version build 24-Feb-2020 17:44:36 Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... build 24-Feb-2020 17:44:36 Setting up debhelper (9.20160115ubuntu3) ... build 24-Feb-2020 17:44:36 Setting up libwww-perl (6.15-1) ... build 24-Feb-2020 17:44:37 Setting up libxml-parser-perl (2.44-1build1) ... build 24-Feb-2020 17:44:37 Setting up intltool (0.51.0-2ubuntu1.16.04.1) ... build 24-Feb-2020 17:44:37 Setting up dh-translations (129) ... build 24-Feb-2020 17:44:37 Setting up cdbs (0.4.130ubuntu2) ... build 24-Feb-2020 17:44:37 Setting up r-base-dev (3.4.4-1xenial0) ... build 24-Feb-2020 17:44:37 Setting up dh-strip-nondeterminism (0.015-1) ... build 24-Feb-2020 17:44:37 Setting up liblwp-protocol-https-perl (6.06-2) ... build 24-Feb-2020 17:44:38 Processing triggers for libc-bin (2.23-0ubuntu11) ... build 24-Feb-2020 17:44:38 Processing triggers for systemd (229-4ubuntu21.27) ... build 24-Feb-2020 17:44:38 Processing triggers for ca-certificates (20170717~16.04.2) ... build 24-Feb-2020 17:44:38 Updating certificates in /etc/ssl/certs... build 24-Feb-2020 17:44:39 148 added, 0 removed; done. build 24-Feb-2020 17:44:39 Running hooks in /etc/ca-certificates/update.d... build 24-Feb-2020 17:44:39 done. build 24-Feb-2020 17:44:40 Installing package into '/usr/local/lib/R/site-library' build 24-Feb-2020 17:44:40 (as 'lib' is unspecified) build 24-Feb-2020 17:44:41 trying URL 'http://cran.rstudio.com/src/contrib/jsonlite_1.6.1.tar.gz' build 24-Feb-2020 17:44:41 Content type 'application/x-gzip' length 1057910 bytes (1.0 MB) build 24-Feb-2020 17:44:41 ================================================== build 24-Feb-2020 17:44:41 downloaded 1.0 MB build 24-Feb-2020 17:44:41 build 24-Feb-2020 17:44:41 * installing *source* package 'jsonlite' ... build 24-Feb-2020 17:44:41 ** package 'jsonlite' successfully unpacked and MD5 sums checked build 24-Feb-2020 17:44:41 ** libs build 24-Feb-2020 17:44:41 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base64.c -o base64.o build 24-Feb-2020 17:44:41 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_array.c -o collapse_array.o build 24-Feb-2020 17:44:41 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_object.c -o collapse_object.o build 24-Feb-2020 17:44:41 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_pretty.c -o collapse_pretty.o build 24-Feb-2020 17:44:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c escape_chars.c -o escape_chars.o build 24-Feb-2020 17:44:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c integer64_to_na.c -o integer64_to_na.o build 24-Feb-2020 17:44:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_datelist.c -o is_datelist.o build 24-Feb-2020 17:44:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_recordlist.c -o is_recordlist.o build 24-Feb-2020 17:44:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_scalarlist.c -o is_scalarlist.o build 24-Feb-2020 17:44:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c modp_numtoa.c -o modp_numtoa.o build 24-Feb-2020 17:44:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c null_to_na.c -o null_to_na.o build 24-Feb-2020 17:44:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c num_to_char.c -o num_to_char.o build 24-Feb-2020 17:44:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c parse.c -o parse.o build 24-Feb-2020 17:44:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c prettify.c -o prettify.o build 24-Feb-2020 17:44:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c push_parser.c -o push_parser.o build 24-Feb-2020 17:44:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c r-base64.c -o r-base64.o build 24-Feb-2020 17:44:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c register.c -o register.o build 24-Feb-2020 17:44:42 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c row_collapse.c -o row_collapse.o build 24-Feb-2020 17:44:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transpose_list.c -o transpose_list.o build 24-Feb-2020 17:44:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c validate.c -o validate.o build 24-Feb-2020 17:44:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl.c -o yajl/yajl.o build 24-Feb-2020 17:44:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o build 24-Feb-2020 17:44:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_buf.c -o yajl/yajl_buf.o build 24-Feb-2020 17:44:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_encode.c -o yajl/yajl_encode.o build 24-Feb-2020 17:44:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_gen.c -o yajl/yajl_gen.o build 24-Feb-2020 17:44:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_lex.c -o yajl/yajl_lex.o build 24-Feb-2020 17:44:43 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_parser.c -o yajl/yajl_parser.o build 24-Feb-2020 17:44:44 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_tree.c -o yajl/yajl_tree.o build 24-Feb-2020 17:44:44 ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o build 24-Feb-2020 17:44:44 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/usr/lib/R/lib -lR build 24-Feb-2020 17:44:44 installing to /usr/local/lib/R/site-library/jsonlite/libs build 24-Feb-2020 17:44:44 ** R build 24-Feb-2020 17:44:44 ** inst build 24-Feb-2020 17:44:44 ** preparing package for lazy loading build 24-Feb-2020 17:44:44 ** help build 24-Feb-2020 17:44:44 *** installing help indices build 24-Feb-2020 17:44:44 ** building package indices build 24-Feb-2020 17:44:44 ** installing vignettes build 24-Feb-2020 17:44:44 ** testing if installed package can be loaded build 24-Feb-2020 17:44:44 * DONE (jsonlite) build 24-Feb-2020 17:44:44  build 24-Feb-2020 17:44:44 The downloaded source packages are in build 24-Feb-2020 17:44:44 '/tmp/RtmpU2OaEW/downloaded_packages' build 24-Feb-2020 17:44:44 [1] "/usr/local/lib/R/site-library/jsonlite" build 24-Feb-2020 17:44:51 Removing intermediate container 45daa299670d build 24-Feb-2020 17:44:51 ---> a973bd4ccf2f build 24-Feb-2020 17:44:51 Step 5/11 : COPY r_extractor.py launcher.R /home/clowder/ build 24-Feb-2020 17:44:52 ---> 80556533b763 build 24-Feb-2020 17:44:52 Step 6/11 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 24-Feb-2020 17:44:52 ---> Running in 9b75ce24bc86 build 24-Feb-2020 17:44:52 Removing intermediate container 9b75ce24bc86 build 24-Feb-2020 17:44:52 ---> a1da036f1cf9 build 24-Feb-2020 17:44:52 Step 7/11 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 24-Feb-2020 17:44:52 ---> Running in d4111deaf1cb build 24-Feb-2020 17:44:53 Removing intermediate container d4111deaf1cb build 24-Feb-2020 17:44:53 ---> fb0a5333ff30 build 24-Feb-2020 17:44:53 Step 8/11 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ build 24-Feb-2020 17:44:53 ---> Running in 423efaf84081 build 24-Feb-2020 17:44:53 Removing intermediate container 423efaf84081 build 24-Feb-2020 17:44:53 ---> 6d689a5a3c93 build 24-Feb-2020 17:44:53 Step 9/11 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi build 24-Feb-2020 17:44:53 ---> Running in 6923bdf8f6e5 build 24-Feb-2020 17:44:54 Removing intermediate container 6923bdf8f6e5 build 24-Feb-2020 17:44:54 ---> a21170338710 build 24-Feb-2020 17:44:54 Step 10/11 : ONBUILD ADD . /home/clowder/ build 24-Feb-2020 17:44:54 ---> Running in 59fb80e4c686 build 24-Feb-2020 17:44:54 Removing intermediate container 59fb80e4c686 build 24-Feb-2020 17:44:54 ---> 2d1bb2d6f045 build 24-Feb-2020 17:44:54 Step 11/11 : CMD python r_extractor.py build 24-Feb-2020 17:44:55 ---> Running in e22cd64135c3 build 24-Feb-2020 17:44:55 Removing intermediate container e22cd64135c3 build 24-Feb-2020 17:44:55 ---> df756eec89f9 build 24-Feb-2020 17:44:55 Successfully built df756eec89f9 build 24-Feb-2020 17:44:55 Successfully tagged clowder/extractors-simple-r-extractor:onbuild build 24-Feb-2020 17:44:55 Sending build context to Docker daemon 241.2kB build 24-Feb-2020 17:44:55 build 24-Feb-2020 17:44:55 Step 1/10 : FROM ubuntu:16.04 build 24-Feb-2020 17:44:55 ---> 77be327e4b63 build 24-Feb-2020 17:44:55 Step 2/10 : ARG PYTHON_VERSION="2.7" build 24-Feb-2020 17:44:55 ---> Using cache build 24-Feb-2020 17:44:55 ---> e7470cc67466 build 24-Feb-2020 17:44:55 Step 3/10 : ENV PYTHON_VERSION=${PYTHON_VERSION} RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" build 24-Feb-2020 17:44:55 ---> Using cache build 24-Feb-2020 17:44:55 ---> 568425515205 build 24-Feb-2020 17:44:55 Step 4/10 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python${PYTHON_VERSION} curl && if [ ! -e /usr/bin/python ]; then ln -s /usr/bin/python${PYTHON_VERSION} /usr/bin/python; fi && curl -k https://bootstrap.pypa.io/get-pip.py -o /tmp/get-pip.py && python /tmp/get-pip.py && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* /tmp/get-pip.py build 24-Feb-2020 17:44:55 ---> Using cache build 24-Feb-2020 17:44:55 ---> 80f9d0134b3b build 24-Feb-2020 17:44:55 Step 5/10 : COPY pyclowder /tmp/pyclowder/pyclowder build 24-Feb-2020 17:44:56 ---> 7f48ffa2a183 build 24-Feb-2020 17:44:56 Step 6/10 : COPY setup.py description.rst /tmp/pyclowder/ build 24-Feb-2020 17:44:56 ---> 2aa7ffb9c054 build 24-Feb-2020 17:44:56 Step 7/10 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder build 24-Feb-2020 17:44:56 ---> Running in 3c4051e36954 build 24-Feb-2020 17:44:57 Processing /tmp/pyclowder build 24-Feb-2020 17:44:58 Collecting enum34==1.1.6 build 24-Feb-2020 17:44:58 Downloading enum34-1.1.6-py3-none-any.whl (12 kB) build 24-Feb-2020 17:44:58 Collecting pika==1.0.0 build 24-Feb-2020 17:44:58 Downloading pika-1.0.0-py2.py3-none-any.whl (148 kB) build 24-Feb-2020 17:44:58 Collecting PyYAML==5.1 build 24-Feb-2020 17:44:58 Downloading PyYAML-5.1.tar.gz (274 kB) build 24-Feb-2020 17:44:59 Collecting requests==2.21.0 build 24-Feb-2020 17:44:59 Downloading requests-2.21.0-py2.py3-none-any.whl (57 kB) build 24-Feb-2020 17:44:59 Collecting requests-toolbelt==0.9.1 build 24-Feb-2020 17:44:59 Downloading requests_toolbelt-0.9.1-py2.py3-none-any.whl (54 kB) build 24-Feb-2020 17:44:59 Collecting urllib3<1.25,>=1.21.1 build 24-Feb-2020 17:44:59 Downloading urllib3-1.24.3-py2.py3-none-any.whl (118 kB) build 24-Feb-2020 17:44:59 Collecting certifi>=2017.4.17 build 24-Feb-2020 17:44:59 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) build 24-Feb-2020 17:45:00 Collecting chardet<3.1.0,>=3.0.2 build 24-Feb-2020 17:45:00 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) build 24-Feb-2020 17:45:00 Collecting idna<2.9,>=2.5 build 24-Feb-2020 17:45:00 Downloading idna-2.8-py2.py3-none-any.whl (58 kB) build 24-Feb-2020 17:45:00 Building wheels for collected packages: pyclowder, PyYAML build 24-Feb-2020 17:45:00 Building wheel for pyclowder (setup.py): started build 24-Feb-2020 17:45:00 Building wheel for pyclowder (setup.py): finished with status 'done' build 24-Feb-2020 17:45:00 Created wheel for pyclowder: filename=pyclowder-3.0.0-py3-none-any.whl size=27547 sha256=7794096886b36d14c03c6ee6e842c4903fc3f40f98a14eecf3b8401b3698bd58 build 24-Feb-2020 17:45:00 Stored in directory: /tmp/pip-ephem-wheel-cache-izetr1fn/wheels/43/1a/b9/bee165c839530283e160bc612f8950df55db3878ccd703dcbc build 24-Feb-2020 17:45:00 Building wheel for PyYAML (setup.py): started build 24-Feb-2020 17:45:00 Building wheel for PyYAML (setup.py): finished with status 'done' build 24-Feb-2020 17:45:00 Created wheel for PyYAML: filename=PyYAML-5.1-cp35-cp35m-linux_x86_64.whl size=44074 sha256=31757ca638a2f3eaa0f4e20d5ba316e744908de0cca95707950035974a70e86d build 24-Feb-2020 17:45:00 Stored in directory: /root/.cache/pip/wheels/b2/78/74/04cc17bc132e5f16411a457e6e61b54dc06916bdd604396c57 build 24-Feb-2020 17:45:00 Successfully built pyclowder PyYAML build 24-Feb-2020 17:45:00 Installing collected packages: enum34, pika, PyYAML, urllib3, certifi, chardet, idna, requests, requests-toolbelt, pyclowder build 24-Feb-2020 17:45:01 Successfully installed PyYAML-5.1 certifi-2019.11.28 chardet-3.0.4 enum34-1.1.6 idna-2.8 pika-1.0.0 pyclowder-3.0.0 requests-2.21.0 requests-toolbelt-0.9.1 urllib3-1.24.3 build 24-Feb-2020 17:45:02 Removing intermediate container 3c4051e36954 build 24-Feb-2020 17:45:02 ---> 2de0886facce build 24-Feb-2020 17:45:02 Step 8/10 : WORKDIR /home/clowder build 24-Feb-2020 17:45:03 ---> Running in 2c2099f36128 build 24-Feb-2020 17:45:03 Removing intermediate container 2c2099f36128 build 24-Feb-2020 17:45:03 ---> cd66d65fdd0e build 24-Feb-2020 17:45:03 Step 9/10 : COPY notifications.json /home/clowder/ build 24-Feb-2020 17:45:04 ---> 9bbd7f9234d5 build 24-Feb-2020 17:45:04 Step 10/10 : CMD python "./${MAIN_SCRIPT}" build 24-Feb-2020 17:45:04 ---> Running in 08c332752f94 build 24-Feb-2020 17:45:04 Removing intermediate container 08c332752f94 build 24-Feb-2020 17:45:04 ---> 2cf1891675a5 build 24-Feb-2020 17:45:04 Successfully built 2cf1891675a5 build 24-Feb-2020 17:45:04 Successfully tagged clowder/pyclowder-python3:latest build 24-Feb-2020 17:45:04 Sending build context to Docker daemon 239.1kB build 24-Feb-2020 17:45:04 build 24-Feb-2020 17:45:04 Step 1/7 : ARG PYCLOWDER_PYTHON="" build 24-Feb-2020 17:45:04 Step 2/7 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest build 24-Feb-2020 17:45:04 ---> 2cf1891675a5 build 24-Feb-2020 17:45:04 Step 3/7 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 24-Feb-2020 17:45:05 ---> Running in e883b0513ddf build 24-Feb-2020 17:45:05 Removing intermediate container e883b0513ddf build 24-Feb-2020 17:45:05 ---> 184dd18750a9 build 24-Feb-2020 17:45:05 Step 4/7 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 24-Feb-2020 17:45:06 ---> Running in 1f6945592035 build 24-Feb-2020 17:45:06 Removing intermediate container 1f6945592035 build 24-Feb-2020 17:45:06 ---> 24c8f949e8fe build 24-Feb-2020 17:45:06 Step 5/7 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 24-Feb-2020 17:45:06 ---> Running in fc1cb9afb8ef build 24-Feb-2020 17:45:07 Removing intermediate container fc1cb9afb8ef build 24-Feb-2020 17:45:07 ---> 9f9d3610c2f5 build 24-Feb-2020 17:45:07 Step 6/7 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 24-Feb-2020 17:45:07 ---> Running in 9e9960d7d2be build 24-Feb-2020 17:45:07 Removing intermediate container 9e9960d7d2be build 24-Feb-2020 17:45:07 ---> c43f5d21e35d build 24-Feb-2020 17:45:07 Step 7/7 : ONBUILD ADD . /home/clowder/ build 24-Feb-2020 17:45:08 ---> Running in e74965fa7577 build 24-Feb-2020 17:45:08 Removing intermediate container e74965fa7577 build 24-Feb-2020 17:45:08 ---> 9db8f3112ad2 build 24-Feb-2020 17:45:08 Successfully built 9db8f3112ad2 build 24-Feb-2020 17:45:08 Successfully tagged clowder/pyclowder-python3:onbuild build 24-Feb-2020 17:45:08 Sending build context to Docker daemon 12.8kB build 24-Feb-2020 17:45:08 build 24-Feb-2020 17:45:08 Step 1/6 : ARG PYCLOWDER_PYTHON="" build 24-Feb-2020 17:45:08 Step 2/6 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:onbuild build 24-Feb-2020 17:45:08 # Executing 5 build triggers build 24-Feb-2020 17:45:09 ---> Running in 98493ff4121d build 24-Feb-2020 17:45:11 Removing intermediate container 98493ff4121d build 24-Feb-2020 17:45:11 ---> Running in 1bc8ac048fad build 24-Feb-2020 17:45:13 Removing intermediate container 1bc8ac048fad build 24-Feb-2020 17:45:13 ---> fe5d5d416f4e build 24-Feb-2020 17:45:13 Step 3/6 : ENV MAIN_SCRIPT="binary_extractor.py" RABBITMQ_QUEUE="" IMAGE_BINARY="" IMAGE_TYPE="" IMAGE_THUMBNAIL_COMMAND="" IMAGE_PREVIEW_COMMAND="" PREVIEW_BINARY="" PREVIEW_TYPE="" PREVIEW_COMMAND="" build 24-Feb-2020 17:45:14 ---> Running in 5868342855ea build 24-Feb-2020 17:45:14 Removing intermediate container 5868342855ea build 24-Feb-2020 17:45:14 ---> e4a41238bc66 build 24-Feb-2020 17:45:14 Step 4/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 24-Feb-2020 17:45:14 ---> Running in 0bd785f78bb1 build 24-Feb-2020 17:45:14 Removing intermediate container 0bd785f78bb1 build 24-Feb-2020 17:45:14 ---> df1d34b99371 build 24-Feb-2020 17:45:14 Step 5/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 24-Feb-2020 17:45:15 ---> Running in 81e4b9546ce8 build 24-Feb-2020 17:45:16 Removing intermediate container 81e4b9546ce8 build 24-Feb-2020 17:45:16 ---> 1d7bd31346a6 build 24-Feb-2020 17:45:16 Step 6/6 : ONBUILD COPY extractor_info.json /home/clowder/ build 24-Feb-2020 17:45:18 ---> Running in f4c4c9627ef8 build 24-Feb-2020 17:45:18 Removing intermediate container f4c4c9627ef8 build 24-Feb-2020 17:45:18 ---> d6d4550fbe45 build 24-Feb-2020 17:45:18 Successfully built d6d4550fbe45 build 24-Feb-2020 17:45:18 Successfully tagged clowder/extractors-binary-preview-python3:onbuild build 24-Feb-2020 17:45:18 Sending build context to Docker daemon 6.656kB build 24-Feb-2020 17:45:18 build 24-Feb-2020 17:45:18 Step 1/11 : ARG PYCLOWDER_PYTHON="" build 24-Feb-2020 17:45:18 Step 2/11 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest build 24-Feb-2020 17:45:18 ---> 2cf1891675a5 build 24-Feb-2020 17:45:18 Step 3/11 : ENV EXTRACTION_FUNC="" build 24-Feb-2020 17:45:19 ---> Running in 6d16697d23fb build 24-Feb-2020 17:45:19 Removing intermediate container 6d16697d23fb build 24-Feb-2020 17:45:19 ---> 3640a8a8d339 build 24-Feb-2020 17:45:19 Step 4/11 : ENV EXTRACTION_MODULE="" build 24-Feb-2020 17:45:19 ---> Running in e632236dcc2b build 24-Feb-2020 17:45:20 Removing intermediate container e632236dcc2b build 24-Feb-2020 17:45:20 ---> d2e9e913186e build 24-Feb-2020 17:45:20 Step 5/11 : COPY simple_extractor.py . build 24-Feb-2020 17:45:20 ---> a20cee6b4711 build 24-Feb-2020 17:45:20 Step 6/11 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 24-Feb-2020 17:45:20 ---> Running in 6b25ea915197 build 24-Feb-2020 17:45:20 Removing intermediate container 6b25ea915197 build 24-Feb-2020 17:45:20 ---> 70e4f6474f2f build 24-Feb-2020 17:45:20 Step 7/11 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 24-Feb-2020 17:45:21 ---> Running in ea33e6da6210 build 24-Feb-2020 17:45:21 Removing intermediate container ea33e6da6210 build 24-Feb-2020 17:45:21 ---> d4e29afde4ab build 24-Feb-2020 17:45:21 Step 8/11 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ build 24-Feb-2020 17:45:21 ---> Running in 4438fe5840bb build 24-Feb-2020 17:45:21 Removing intermediate container 4438fe5840bb build 24-Feb-2020 17:45:21 ---> 609e6a03a8ed build 24-Feb-2020 17:45:21 Step 9/11 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi build 24-Feb-2020 17:45:22 ---> Running in eaa81e80a890 build 24-Feb-2020 17:45:23 Removing intermediate container eaa81e80a890 build 24-Feb-2020 17:45:23 ---> d2808bc68c48 build 24-Feb-2020 17:45:23 Step 10/11 : ONBUILD ADD . /home/clowder/ build 24-Feb-2020 17:45:24 ---> Running in c9cfd36a15b5 build 24-Feb-2020 17:45:25 Removing intermediate container c9cfd36a15b5 build 24-Feb-2020 17:45:25 ---> 7d8e778210bb build 24-Feb-2020 17:45:25 Step 11/11 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" build 24-Feb-2020 17:45:25 ---> Running in d83c2bcf3788 build 24-Feb-2020 17:45:26 Removing intermediate container d83c2bcf3788 build 24-Feb-2020 17:45:26 ---> f7edd6f5bca2 build 24-Feb-2020 17:45:26 Successfully built f7edd6f5bca2 build 24-Feb-2020 17:45:26 Successfully tagged clowder/extractors-simple-extractor-python3:onbuild build 24-Feb-2020 17:45:26 Sending build context to Docker daemon 13.31kB build 24-Feb-2020 17:45:26 build 24-Feb-2020 17:45:26 Step 1/11 : ARG PYCLOWDER_PYTHON="" build 24-Feb-2020 17:45:26 Step 2/11 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest build 24-Feb-2020 17:45:26 ---> 2cf1891675a5 build 24-Feb-2020 17:45:26 Step 3/11 : ENV R_SCRIPT="" R_FUNCTION="" build 24-Feb-2020 17:45:27 ---> Running in 6bebad181b30 build 24-Feb-2020 17:45:27 Removing intermediate container 6bebad181b30 build 24-Feb-2020 17:45:27 ---> 43b86f31b80c build 24-Feb-2020 17:45:27 Step 4/11 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" build 24-Feb-2020 17:45:27 ---> Running in 165f4cfc6970 build 24-Feb-2020 17:45:28 Executing: /tmp/tmp.dH9gV2w5iR/gpg.1.sh --keyserver build 24-Feb-2020 17:45:28 keyserver.ubuntu.com build 24-Feb-2020 17:45:28 --recv-keys build 24-Feb-2020 17:45:28 E298A3A825C0D65DFD57CBB651716619E084DAB9 build 24-Feb-2020 17:45:28 gpg: requesting key E084DAB9 from hkp server keyserver.ubuntu.com build 24-Feb-2020 17:45:29 gpg: key E084DAB9: public key "Michael Rutter " imported build 24-Feb-2020 17:45:29 gpg: Total number processed: 1 build 24-Feb-2020 17:45:29 gpg: imported: 1 (RSA: 1) build 24-Feb-2020 17:45:33 Reading package lists... build 24-Feb-2020 17:45:33 Building dependency tree... build 24-Feb-2020 17:45:33 Reading state information... build 24-Feb-2020 17:45:33 The following additional packages will be installed: build 24-Feb-2020 17:45:33 autoconf automake autotools-dev binutils bsdmainutils build-essential bzip2 build 24-Feb-2020 17:45:33 ca-certificates cdbs cpp cpp-5 debhelper dh-strip-nondeterminism build 24-Feb-2020 17:45:33 dh-translations dpkg-dev file fontconfig fontconfig-config fonts-dejavu-core build 24-Feb-2020 17:45:33 g++ g++-5 gcc gcc-5 gettext gettext-base gfortran gfortran-5 groff-base build 24-Feb-2020 17:45:33 icu-devtools intltool intltool-debian libarchive-zip-perl libasan2 build 24-Feb-2020 17:45:33 libasprintf0v5 libatomic1 libblas-common libblas-dev libblas3 libbz2-dev build 24-Feb-2020 17:45:33 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcroco3 libcurl3 build 24-Feb-2020 17:45:33 libdatrie1 libdpkg-perl libencode-locale-perl libfile-listing-perl build 24-Feb-2020 17:45:33 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-5-dev build 24-Feb-2020 17:45:33 libgdbm3 libgfortran-5-dev libgfortran3 libglib2.0-0 libgomp1 libgraphite2-3 build 24-Feb-2020 17:45:33 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl build 24-Feb-2020 17:45:33 libhttp-cookies-perl libhttp-date-perl libhttp-message-perl build 24-Feb-2020 17:45:33 libhttp-negotiate-perl libice6 libicu-dev libicu55 libio-html-perl build 24-Feb-2020 17:45:33 libio-socket-ssl-perl libisl15 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 build 24-Feb-2020 17:45:33 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblsan0 build 24-Feb-2020 17:45:33 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic1 build 24-Feb-2020 17:45:33 libmpc3 libmpfr4 libmpx0 libncurses5-dev libnet-http-perl libnet-ssleay-perl build 24-Feb-2020 17:45:33 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils build 24-Feb-2020 17:45:33 libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.22 build 24-Feb-2020 17:45:33 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libpython-stdlib build 24-Feb-2020 17:45:33 libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline-dev build 24-Feb-2020 17:45:33 libreadline6-dev libsigsegv2 libsm6 libstdc++-5-dev libtcl8.6 libthai-data build 24-Feb-2020 17:45:33 libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libtsan0 libubsan0 build 24-Feb-2020 17:45:33 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 build 24-Feb-2020 17:45:33 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 build 24-Feb-2020 17:45:33 libxft2 libxml-parser-perl libxml2 libxmuu1 libxrender1 libxss1 libxt6 build 24-Feb-2020 17:45:33 linux-libc-dev m4 make man-db netbase openssl patch perl perl-modules-5.22 build 24-Feb-2020 17:45:33 pkg-config po-debconf python python-minimal python-pkg-resources build 24-Feb-2020 17:45:33 python-scour python-six python2.7 python2.7-minimal tzdata ucf unzip build 24-Feb-2020 17:45:33 x11-common xauth xdg-utils xz-utils zip zlib1g-dev build 24-Feb-2020 17:45:33 Suggested packages: build 24-Feb-2020 17:45:33 autoconf-archive gnu-standards autoconf-doc libtool binutils-doc wamerican build 24-Feb-2020 17:45:33 | wordlist whois vacation bzip2-doc devscripts cpp-doc gcc-5-locales dh-make build 24-Feb-2020 17:45:33 debian-keyring g++-multilib g++-5-multilib gcc-5-doc libstdc++6-5-dbg build 24-Feb-2020 17:45:33 gcc-multilib manpages-dev flex bison gdb gcc-doc gcc-5-multilib libgcc1-dbg build 24-Feb-2020 17:45:33 libgomp1-dbg libitm1-dbg libatomic1-dbg libasan2-dbg liblsan0-dbg build 24-Feb-2020 17:45:33 libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx0-dbg libquadmath0-dbg build 24-Feb-2020 17:45:33 gettext-doc autopoint gfortran-multilib gfortran-doc gfortran-5-multilib build 24-Feb-2020 17:45:33 gfortran-5-doc libgfortran3-dbg groff liblapack-doc-man liblapack-doc build 24-Feb-2020 17:45:33 glibc-doc libdata-dump-perl icu-doc libcrypt-ssleay-perl liblzma-doc build 24-Feb-2020 17:45:33 ncurses-doc readline-doc libstdc++-5-doc tcl8.6 tk8.6 libauthen-ntlm-perl build 24-Feb-2020 17:45:33 make-doc less www-browser ed diffutils-doc perl-doc build 24-Feb-2020 17:45:33 libterm-readline-gnu-perl | libterm-readline-perl-perl libmail-box-perl build 24-Feb-2020 17:45:33 python-doc python-tk python-setuptools python-rsvg python-cairo build 24-Feb-2020 17:45:33 python2.7-doc binfmt-support ess r-doc-info | r-doc-pdf r-mathlib build 24-Feb-2020 17:45:33 r-base-html texlive-base texlive-latex-base texlive-generic-recommended build 24-Feb-2020 17:45:33 texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils build 24-Feb-2020 17:45:33 texlive-latex-recommended texlive-latex-extra texinfo gvfs-bin build 24-Feb-2020 17:45:33 Recommended packages: build 24-Feb-2020 17:45:33 fakeroot libalgorithm-merge-perl libasprintf-dev libgettextpo-dev bzip2-doc build 24-Feb-2020 17:45:33 manpages manpages-dev libfile-fcntllock-perl libglib2.0-data build 24-Feb-2020 17:45:33 shared-mime-info xdg-user-dirs libhtml-format-perl libhtml-form-perl build 24-Feb-2020 17:45:33 libhttp-daemon-perl libmailtools-perl xml-core ifupdown rename build 24-Feb-2020 17:45:33 libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl build 24-Feb-2020 17:45:33 libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils build 24-Feb-2020 17:45:33 The following NEW packages will be installed: build 24-Feb-2020 17:45:33 autoconf automake autotools-dev binutils bsdmainutils build-essential bzip2 build 24-Feb-2020 17:45:33 ca-certificates cdbs cpp cpp-5 debhelper dh-strip-nondeterminism build 24-Feb-2020 17:45:33 dh-translations dpkg-dev file fontconfig fontconfig-config fonts-dejavu-core build 24-Feb-2020 17:45:33 g++ g++-5 gcc gcc-5 gettext gettext-base gfortran gfortran-5 groff-base build 24-Feb-2020 17:45:33 icu-devtools intltool intltool-debian libarchive-zip-perl libasan2 build 24-Feb-2020 17:45:33 libasprintf0v5 libatomic1 libblas-common libblas-dev libblas3 libbz2-dev build 24-Feb-2020 17:45:33 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcroco3 libcurl3 build 24-Feb-2020 17:45:33 libdatrie1 libdpkg-perl libencode-locale-perl libfile-listing-perl build 24-Feb-2020 17:45:33 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-5-dev build 24-Feb-2020 17:45:33 libgdbm3 libgfortran-5-dev libgfortran3 libglib2.0-0 libgomp1 libgraphite2-3 build 24-Feb-2020 17:45:33 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl build 24-Feb-2020 17:45:33 libhttp-cookies-perl libhttp-date-perl libhttp-message-perl build 24-Feb-2020 17:45:33 libhttp-negotiate-perl libice6 libicu-dev libicu55 libio-html-perl build 24-Feb-2020 17:45:33 libio-socket-ssl-perl libisl15 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 build 24-Feb-2020 17:45:33 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblsan0 build 24-Feb-2020 17:45:33 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic1 build 24-Feb-2020 17:45:33 libmpc3 libmpfr4 libmpx0 libncurses5-dev libnet-http-perl libnet-ssleay-perl build 24-Feb-2020 17:45:33 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils build 24-Feb-2020 17:45:33 libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.22 build 24-Feb-2020 17:45:33 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libpython-stdlib build 24-Feb-2020 17:45:33 libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline-dev build 24-Feb-2020 17:45:33 libreadline6-dev libsigsegv2 libsm6 libstdc++-5-dev libtcl8.6 libthai-data build 24-Feb-2020 17:45:33 libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libtsan0 libubsan0 build 24-Feb-2020 17:45:33 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 build 24-Feb-2020 17:45:33 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 build 24-Feb-2020 17:45:33 libxft2 libxml-parser-perl libxml2 libxmuu1 libxrender1 libxss1 libxt6 build 24-Feb-2020 17:45:33 linux-libc-dev m4 make man-db netbase openssl patch perl perl-modules-5.22 build 24-Feb-2020 17:45:33 pkg-config po-debconf python python-minimal python-pkg-resources build 24-Feb-2020 17:45:33 python-scour python-six python2.7 python2.7-minimal r-base-core r-base-dev build 24-Feb-2020 17:45:33 tzdata ucf unzip x11-common xauth xdg-utils xz-utils zip zlib1g-dev build 24-Feb-2020 17:45:34 0 upgraded, 174 newly installed, 0 to remove and 0 not upgraded. build 24-Feb-2020 17:45:34 Need to get 119 MB of archives. build 24-Feb-2020 17:45:34 After this operation, 424 MB of additional disk space will be used. build 24-Feb-2020 17:45:34 Get:1 http://cran.rstudio.com/bin/linux/ubuntu xenial/ r-base-core 3.4.4-1xenial0 [23.2 MB] build 24-Feb-2020 17:45:34 Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgdbm3 amd64 1.8.3-13.1 [16.9 kB] build 24-Feb-2020 17:45:34 Get:3 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libglib2.0-0 amd64 2.48.2-0ubuntu4.4 [1120 kB] build 24-Feb-2020 17:45:34 Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] build 24-Feb-2020 17:45:34 Get:5 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxdmcp6 amd64 1:1.1.2-1.1 [11.0 kB] build 24-Feb-2020 17:45:34 Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb1 amd64 1.11.1-1ubuntu1 [40.0 kB] build 24-Feb-2020 17:45:34 Get:7 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-data all 2:1.6.3-1ubuntu2.1 [113 kB] build 24-Feb-2020 17:45:34 Get:8 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-6 amd64 2:1.6.3-1ubuntu2.1 [570 kB] build 24-Feb-2020 17:45:34 Get:9 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB] build 24-Feb-2020 17:45:34 Get:10 http://archive.ubuntu.com/ubuntu xenial/main amd64 groff-base amd64 1.22.3-7 [1151 kB] build 24-Feb-2020 17:45:34 Get:11 http://archive.ubuntu.com/ubuntu xenial/main amd64 bsdmainutils amd64 9.0.6ubuntu3 [174 kB] build 24-Feb-2020 17:45:34 Get:12 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpipeline1 amd64 1.4.1-2 [24.6 kB] build 24-Feb-2020 17:45:34 Get:13 http://archive.ubuntu.com/ubuntu xenial/main amd64 man-db amd64 2.7.5-1 [854 kB] build 24-Feb-2020 17:45:34 Get:14 http://archive.ubuntu.com/ubuntu xenial/main amd64 fonts-dejavu-core all 2.35-1 [1039 kB] build 24-Feb-2020 17:45:35 Get:15 http://archive.ubuntu.com/ubuntu xenial/main amd64 ucf all 3.0036 [52.9 kB] build 24-Feb-2020 17:45:35 Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 fontconfig-config all 2.11.94-0ubuntu1.1 [49.9 kB] build 24-Feb-2020 17:45:35 Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpng12-0 amd64 1.2.54-1ubuntu1.1 [116 kB] build 24-Feb-2020 17:45:35 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfreetype6 amd64 2.6.1-0.1ubuntu2.4 [315 kB] build 24-Feb-2020 17:45:35 Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfontconfig1 amd64 2.11.94-0ubuntu1.1 [131 kB] build 24-Feb-2020 17:45:35 Get:20 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 fontconfig amd64 2.11.94-0ubuntu1.1 [178 kB] build 24-Feb-2020 17:45:35 Get:21 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 x11-common all 1:7.7+13ubuntu3.1 [22.9 kB] build 24-Feb-2020 17:45:35 Get:22 http://archive.ubuntu.com/ubuntu xenial/main amd64 libice6 amd64 2:1.0.9-1 [39.2 kB] build 24-Feb-2020 17:45:35 Get:23 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libjpeg-turbo8 amd64 1.4.2-0ubuntu3.3 [111 kB] build 24-Feb-2020 17:45:35 Get:24 http://cran.rstudio.com/bin/linux/ubuntu xenial/ r-base-dev 3.4.4-1xenial0 [4416 B] build 24-Feb-2020 17:45:35 Get:25 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpcrecpp0v5 amd64 2:8.38-3.1 [15.2 kB] build 24-Feb-2020 17:45:35 Get:26 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsigsegv2 amd64 2.10-4 [14.1 kB] build 24-Feb-2020 17:45:35 Get:27 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB] build 24-Feb-2020 17:45:35 Get:28 http://archive.ubuntu.com/ubuntu xenial/main amd64 libunistring0 amd64 0.9.3-5.2ubuntu1 [279 kB] build 24-Feb-2020 17:45:35 Get:29 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxrender1 amd64 1:0.9.9-0ubuntu1 [18.5 kB] build 24-Feb-2020 17:45:35 Get:30 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxft2 amd64 2.3.2-1 [36.1 kB] build 24-Feb-2020 17:45:35 Get:31 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxss1 amd64 1:1.2.2-1 [8582 B] build 24-Feb-2020 17:45:35 Get:32 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 perl-modules-5.22 all 5.22.1-9ubuntu0.6 [2629 kB] build 24-Feb-2020 17:45:36 Get:33 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libperl5.22 amd64 5.22.1-9ubuntu0.6 [3405 kB] build 24-Feb-2020 17:45:36 Get:34 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 perl amd64 5.22.1-9ubuntu0.6 [237 kB] build 24-Feb-2020 17:45:36 Get:35 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-minimal amd64 2.7.12-1ubuntu0~16.04.9 [338 kB] build 24-Feb-2020 17:45:36 Get:36 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7-minimal amd64 2.7.12-1ubuntu0~16.04.9 [1262 kB] build 24-Feb-2020 17:45:36 Get:37 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-minimal amd64 2.7.12-1~16.04 [28.1 kB] build 24-Feb-2020 17:45:36 Get:38 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-stdlib amd64 2.7.12-1ubuntu0~16.04.9 [1884 kB] build 24-Feb-2020 17:45:36 Get:39 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7 amd64 2.7.12-1ubuntu0~16.04.9 [224 kB] build 24-Feb-2020 17:45:36 Get:40 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython-stdlib amd64 2.7.12-1~16.04 [7768 B] build 24-Feb-2020 17:45:36 Get:41 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python amd64 2.7.12-1~16.04 [137 kB] build 24-Feb-2020 17:45:36 Get:42 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjbig0 amd64 2.1-3.1 [26.6 kB] build 24-Feb-2020 17:45:36 Get:43 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpfr4 amd64 3.1.4-1 [191 kB] build 24-Feb-2020 17:45:36 Get:44 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpc3 amd64 1.0.3-1 [39.7 kB] build 24-Feb-2020 17:45:36 Get:45 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 tzdata all 2019c-0ubuntu0.16.04 [168 kB] build 24-Feb-2020 17:45:37 Get:46 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 bzip2 amd64 1.0.6-8ubuntu0.2 [32.5 kB] build 24-Feb-2020 17:45:37 Get:47 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmagic1 amd64 1:5.25-2ubuntu1.3 [216 kB] build 24-Feb-2020 17:45:37 Get:48 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 file amd64 1:5.25-2ubuntu1.3 [21.3 kB] build 24-Feb-2020 17:45:37 Get:49 http://archive.ubuntu.com/ubuntu xenial/main amd64 netbase all 5.3 [12.9 kB] build 24-Feb-2020 17:45:37 Get:50 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 openssl amd64 1.0.2g-1ubuntu4.15 [492 kB] build 24-Feb-2020 17:45:37 Get:51 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 ca-certificates all 20170717~16.04.2 [167 kB] build 24-Feb-2020 17:45:37 Get:52 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasprintf0v5 amd64 0.19.7-2ubuntu3.1 [6568 B] build 24-Feb-2020 17:45:37 Get:53 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gettext-base amd64 0.19.7-2ubuntu3.1 [48.0 kB] build 24-Feb-2020 17:45:37 Get:54 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libicu55 amd64 55.1-7ubuntu0.4 [7646 kB] build 24-Feb-2020 17:45:37 Get:55 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libxml2 amd64 2.9.3+dfsg1-1ubuntu0.7 [698 kB] build 24-Feb-2020 17:45:37 Get:56 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxmuu1 amd64 2:1.1.2-2 [9674 B] build 24-Feb-2020 17:45:37 Get:57 http://archive.ubuntu.com/ubuntu xenial/main amd64 xauth amd64 1:1.0.9-1ubuntu2 [22.7 kB] build 24-Feb-2020 17:45:37 Get:58 http://archive.ubuntu.com/ubuntu xenial/main amd64 m4 amd64 1.4.17-5 [195 kB] build 24-Feb-2020 17:45:37 Get:59 http://archive.ubuntu.com/ubuntu xenial/main amd64 autoconf all 2.69-9 [321 kB] build 24-Feb-2020 17:45:37 Get:60 http://archive.ubuntu.com/ubuntu xenial/main amd64 autotools-dev all 20150820.1 [39.8 kB] build 24-Feb-2020 17:45:37 Get:61 http://archive.ubuntu.com/ubuntu xenial/main amd64 automake all 1:1.15-4ubuntu1 [510 kB] build 24-Feb-2020 17:45:37 Get:62 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 binutils amd64 2.26.1-1ubuntu1~16.04.8 [2312 kB] build 24-Feb-2020 17:45:37 Get:63 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc-dev-bin amd64 2.23-0ubuntu11 [68.5 kB] build 24-Feb-2020 17:45:37 Get:64 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 linux-libc-dev amd64 4.4.0-174.204 [859 kB] build 24-Feb-2020 17:45:37 Get:65 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc6-dev amd64 2.23-0ubuntu11 [2086 kB] build 24-Feb-2020 17:45:38 Get:66 http://archive.ubuntu.com/ubuntu xenial/main amd64 libisl15 amd64 0.16.1-1 [524 kB] build 24-Feb-2020 17:45:38 Get:67 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 cpp-5 amd64 5.4.0-6ubuntu1~16.04.12 [7783 kB] build 24-Feb-2020 17:45:39 Get:68 http://archive.ubuntu.com/ubuntu xenial/main amd64 cpp amd64 4:5.3.1-1ubuntu1 [27.7 kB] build 24-Feb-2020 17:45:39 Get:69 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcc1-0 amd64 5.4.0-6ubuntu1~16.04.12 [38.8 kB] build 24-Feb-2020 17:45:39 Get:70 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgomp1 amd64 5.4.0-6ubuntu1~16.04.12 [55.2 kB] build 24-Feb-2020 17:45:39 Get:71 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libitm1 amd64 5.4.0-6ubuntu1~16.04.12 [27.4 kB] build 24-Feb-2020 17:45:39 Get:72 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libatomic1 amd64 5.4.0-6ubuntu1~16.04.12 [8892 B] build 24-Feb-2020 17:45:39 Get:73 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasan2 amd64 5.4.0-6ubuntu1~16.04.12 [265 kB] build 24-Feb-2020 17:45:39 Get:74 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 liblsan0 amd64 5.4.0-6ubuntu1~16.04.12 [105 kB] build 24-Feb-2020 17:45:39 Get:75 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtsan0 amd64 5.4.0-6ubuntu1~16.04.12 [244 kB] build 24-Feb-2020 17:45:39 Get:76 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libubsan0 amd64 5.4.0-6ubuntu1~16.04.12 [95.3 kB] build 24-Feb-2020 17:45:39 Get:77 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcilkrts5 amd64 5.4.0-6ubuntu1~16.04.12 [40.0 kB] build 24-Feb-2020 17:45:39 Get:78 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmpx0 amd64 5.4.0-6ubuntu1~16.04.12 [9762 B] build 24-Feb-2020 17:45:39 Get:79 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libquadmath0 amd64 5.4.0-6ubuntu1~16.04.12 [131 kB] build 24-Feb-2020 17:45:39 Get:80 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgcc-5-dev amd64 5.4.0-6ubuntu1~16.04.12 [2239 kB] build 24-Feb-2020 17:45:39 Get:81 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gcc-5 amd64 5.4.0-6ubuntu1~16.04.12 [8612 kB] build 24-Feb-2020 17:45:39 Get:82 http://archive.ubuntu.com/ubuntu xenial/main amd64 gcc amd64 4:5.3.1-1ubuntu1 [5244 B] build 24-Feb-2020 17:45:39 Get:83 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libstdc++-5-dev amd64 5.4.0-6ubuntu1~16.04.12 [1428 kB] build 24-Feb-2020 17:45:39 Get:84 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 g++-5 amd64 5.4.0-6ubuntu1~16.04.12 [8430 kB] build 24-Feb-2020 17:45:39 Get:85 http://archive.ubuntu.com/ubuntu xenial/main amd64 g++ amd64 4:5.3.1-1ubuntu1 [1504 B] build 24-Feb-2020 17:45:39 Get:86 http://archive.ubuntu.com/ubuntu xenial/main amd64 make amd64 4.1-6 [151 kB] build 24-Feb-2020 17:45:40 Get:87 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdpkg-perl all 1.18.4ubuntu1.6 [195 kB] build 24-Feb-2020 17:45:40 Get:88 http://archive.ubuntu.com/ubuntu xenial/main amd64 xz-utils amd64 5.1.1alpha+20120614-2ubuntu2 [78.8 kB] build 24-Feb-2020 17:45:40 Get:89 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 patch amd64 2.7.5-1ubuntu0.16.04.2 [90.8 kB] build 24-Feb-2020 17:45:40 Get:90 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 dpkg-dev all 1.18.4ubuntu1.6 [584 kB] build 24-Feb-2020 17:45:40 Get:91 http://archive.ubuntu.com/ubuntu xenial/main amd64 build-essential amd64 12.1ubuntu2 [4758 B] build 24-Feb-2020 17:45:40 Get:92 http://archive.ubuntu.com/ubuntu xenial/main amd64 libcroco3 amd64 0.6.11-1 [81.6 kB] build 24-Feb-2020 17:45:40 Get:93 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gettext amd64 0.19.7-2ubuntu3.1 [1082 kB] build 24-Feb-2020 17:45:40 Get:94 http://archive.ubuntu.com/ubuntu xenial/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] build 24-Feb-2020 17:45:40 Get:95 http://archive.ubuntu.com/ubuntu xenial/main amd64 po-debconf all 1.0.19 [234 kB] build 24-Feb-2020 17:45:40 Get:96 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libarchive-zip-perl all 1.56-2ubuntu0.1 [84.7 kB] build 24-Feb-2020 17:45:40 Get:97 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfile-stripnondeterminism-perl all 0.015-1 [10.3 kB] build 24-Feb-2020 17:45:40 Get:98 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] build 24-Feb-2020 17:45:40 Get:99 http://archive.ubuntu.com/ubuntu xenial/main amd64 dh-strip-nondeterminism all 0.015-1 [4864 B] build 24-Feb-2020 17:45:40 Get:100 http://archive.ubuntu.com/ubuntu xenial/main amd64 debhelper all 9.20160115ubuntu3 [739 kB] build 24-Feb-2020 17:45:40 Get:101 http://archive.ubuntu.com/ubuntu xenial/main amd64 liburi-perl all 1.71-1 [76.9 kB] build 24-Feb-2020 17:45:40 Get:102 http://archive.ubuntu.com/ubuntu xenial/main amd64 libencode-locale-perl all 1.05-1 [12.3 kB] build 24-Feb-2020 17:45:41 Get:103 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-date-perl all 6.02-1 [10.4 kB] build 24-Feb-2020 17:45:41 Get:104 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfile-listing-perl all 6.04-1 [9774 B] build 24-Feb-2020 17:45:41 Get:105 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhtml-tagset-perl all 3.20-2 [13.5 kB] build 24-Feb-2020 17:45:41 Get:106 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhtml-parser-perl amd64 3.72-1 [86.1 kB] build 24-Feb-2020 17:45:41 Get:107 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhtml-tree-perl all 5.03-2 [197 kB] build 24-Feb-2020 17:45:41 Get:108 http://archive.ubuntu.com/ubuntu xenial/main amd64 libio-html-perl all 1.001-1 [14.9 kB] build 24-Feb-2020 17:45:41 Get:109 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblwp-mediatypes-perl all 6.02-1 [21.7 kB] build 24-Feb-2020 17:45:41 Get:110 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-message-perl all 6.11-1 [74.3 kB] build 24-Feb-2020 17:45:41 Get:111 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-cookies-perl all 6.01-1 [17.2 kB] build 24-Feb-2020 17:45:41 Get:112 http://archive.ubuntu.com/ubuntu xenial/main amd64 libhttp-negotiate-perl all 6.00-2 [13.4 kB] build 24-Feb-2020 17:45:41 Get:113 http://archive.ubuntu.com/ubuntu xenial/main amd64 libnet-ssleay-perl amd64 1.72-1build1 [259 kB] build 24-Feb-2020 17:45:41 Get:114 http://archive.ubuntu.com/ubuntu xenial/main amd64 libio-socket-ssl-perl all 2.024-1 [159 kB] build 24-Feb-2020 17:45:41 Get:115 http://archive.ubuntu.com/ubuntu xenial/main amd64 libnet-http-perl all 6.09-1 [24.0 kB] build 24-Feb-2020 17:45:41 Get:116 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblwp-protocol-https-perl all 6.06-2 [8682 B] build 24-Feb-2020 17:45:41 Get:117 http://archive.ubuntu.com/ubuntu xenial/main amd64 libwww-robotrules-perl all 6.01-1 [14.1 kB] build 24-Feb-2020 17:45:41 Get:118 http://archive.ubuntu.com/ubuntu xenial/main amd64 libwww-perl all 6.15-1 [146 kB] build 24-Feb-2020 17:45:41 Get:119 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxml-parser-perl amd64 2.44-1build1 [200 kB] build 24-Feb-2020 17:45:41 Get:120 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 intltool all 0.51.0-2ubuntu1.16.04.1 [45.0 kB] build 24-Feb-2020 17:45:41 Get:121 http://archive.ubuntu.com/ubuntu xenial/main amd64 dh-translations all 129 [22.1 kB] build 24-Feb-2020 17:45:41 Get:122 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-six all 1.10.0-3 [10.9 kB] build 24-Feb-2020 17:45:41 Get:123 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-pkg-resources all 20.7.0-1 [108 kB] build 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previously unselected package libnet-http-perl. build 24-Feb-2020 17:46:52 Preparing to unpack .../libnet-http-perl_6.09-1_all.deb ... build 24-Feb-2020 17:46:52 Unpacking libnet-http-perl (6.09-1) ... build 24-Feb-2020 17:46:52 Selecting previously unselected package liblwp-protocol-https-perl. build 24-Feb-2020 17:46:52 Preparing to unpack .../liblwp-protocol-https-perl_6.06-2_all.deb ... build 24-Feb-2020 17:46:52 Unpacking liblwp-protocol-https-perl (6.06-2) ... build 24-Feb-2020 17:46:53 Selecting previously unselected package libwww-robotrules-perl. build 24-Feb-2020 17:46:53 Preparing to unpack .../libwww-robotrules-perl_6.01-1_all.deb ... build 24-Feb-2020 17:46:53 Unpacking libwww-robotrules-perl (6.01-1) ... build 24-Feb-2020 17:46:53 Selecting previously unselected package libwww-perl. build 24-Feb-2020 17:46:53 Preparing to unpack .../libwww-perl_6.15-1_all.deb ... build 24-Feb-2020 17:46:53 Unpacking libwww-perl (6.15-1) ... build 24-Feb-2020 17:46:53 Selecting previously 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python-pkg-resources. build 24-Feb-2020 17:46:54 Preparing to unpack .../python-pkg-resources_20.7.0-1_all.deb ... build 24-Feb-2020 17:46:54 Unpacking python-pkg-resources (20.7.0-1) ... build 24-Feb-2020 17:46:55 Selecting previously unselected package python-scour. build 24-Feb-2020 17:46:55 Preparing to unpack .../python-scour_0.32-1_all.deb ... build 24-Feb-2020 17:46:55 Unpacking python-scour (0.32-1) ... build 24-Feb-2020 17:46:55 Selecting previously unselected package cdbs. build 24-Feb-2020 17:46:55 Preparing to unpack .../cdbs_0.4.130ubuntu2_all.deb ... build 24-Feb-2020 17:46:55 Unpacking cdbs (0.4.130ubuntu2) ... build 24-Feb-2020 17:46:56 Selecting previously unselected package libgfortran3:amd64. build 24-Feb-2020 17:46:56 Preparing to unpack .../libgfortran3_5.4.0-6ubuntu1~16.04.12_amd64.deb ... build 24-Feb-2020 17:46:56 Unpacking libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:46:56 Selecting previously unselected package libgfortran-5-dev:amd64. 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17:47:04 Selecting previously unselected package libicu-dev:amd64. build 24-Feb-2020 17:47:04 Preparing to unpack .../libicu-dev_55.1-7ubuntu0.4_amd64.deb ... build 24-Feb-2020 17:47:04 Unpacking libicu-dev:amd64 (55.1-7ubuntu0.4) ... build 24-Feb-2020 17:47:06 Selecting previously unselected package libjpeg-turbo8-dev:amd64. build 24-Feb-2020 17:47:06 Preparing to unpack .../libjpeg-turbo8-dev_1.4.2-0ubuntu3.3_amd64.deb ... build 24-Feb-2020 17:47:06 Unpacking libjpeg-turbo8-dev:amd64 (1.4.2-0ubuntu3.3) ... build 24-Feb-2020 17:47:06 Selecting previously unselected package libjpeg8:amd64. build 24-Feb-2020 17:47:06 Preparing to unpack .../libjpeg8_8c-2ubuntu8_amd64.deb ... build 24-Feb-2020 17:47:07 Unpacking libjpeg8:amd64 (8c-2ubuntu8) ... build 24-Feb-2020 17:47:07 Selecting previously unselected package libjpeg8-dev:amd64. build 24-Feb-2020 17:47:07 Preparing to unpack .../libjpeg8-dev_8c-2ubuntu8_amd64.deb ... build 24-Feb-2020 17:47:07 Unpacking libjpeg8-dev:amd64 (8c-2ubuntu8) 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libpango-1.0-0:amd64 (1.38.1-1) ... build 24-Feb-2020 17:47:12 Selecting previously unselected package libpangoft2-1.0-0:amd64. build 24-Feb-2020 17:47:12 Preparing to unpack .../libpangoft2-1.0-0_1.38.1-1_amd64.deb ... build 24-Feb-2020 17:47:12 Unpacking libpangoft2-1.0-0:amd64 (1.38.1-1) ... build 24-Feb-2020 17:47:12 Selecting previously unselected package libpangocairo-1.0-0:amd64. build 24-Feb-2020 17:47:12 Preparing to unpack .../libpangocairo-1.0-0_1.38.1-1_amd64.deb ... build 24-Feb-2020 17:47:12 Unpacking libpangocairo-1.0-0:amd64 (1.38.1-1) ... build 24-Feb-2020 17:47:14 Selecting previously unselected package libpaper1:amd64. build 24-Feb-2020 17:47:14 Preparing to unpack .../libpaper1_1.1.24+nmu4ubuntu1_amd64.deb ... build 24-Feb-2020 17:47:14 Unpacking libpaper1:amd64 (1.1.24+nmu4ubuntu1) ... build 24-Feb-2020 17:47:14 Selecting previously unselected package libpaper-utils. build 24-Feb-2020 17:47:14 Preparing to unpack .../libpaper-utils_1.1.24+nmu4ubuntu1_amd64.deb ... build 24-Feb-2020 17:47:14 Unpacking libpaper-utils (1.1.24+nmu4ubuntu1) ... build 24-Feb-2020 17:47:14 Selecting previously unselected package libpcre16-3:amd64. build 24-Feb-2020 17:47:14 Preparing to unpack .../libpcre16-3_2%3a8.38-3.1_amd64.deb ... build 24-Feb-2020 17:47:14 Unpacking libpcre16-3:amd64 (2:8.38-3.1) ... build 24-Feb-2020 17:47:15 Selecting previously unselected package libpcre32-3:amd64. build 24-Feb-2020 17:47:15 Preparing to unpack .../libpcre32-3_2%3a8.38-3.1_amd64.deb ... build 24-Feb-2020 17:47:15 Unpacking libpcre32-3:amd64 (2:8.38-3.1) ... build 24-Feb-2020 17:47:15 Selecting previously unselected package libpcre3-dev:amd64. build 24-Feb-2020 17:47:15 Preparing to unpack .../libpcre3-dev_2%3a8.38-3.1_amd64.deb ... build 24-Feb-2020 17:47:15 Unpacking libpcre3-dev:amd64 (2:8.38-3.1) ... build 24-Feb-2020 17:47:15 Selecting previously unselected package zlib1g-dev:amd64. build 24-Feb-2020 17:47:15 Preparing to unpack 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build 24-Feb-2020 17:47:22 Unpacking r-base-core (3.4.4-1xenial0) ... build 24-Feb-2020 17:47:24 Selecting previously unselected package liblzma-dev:amd64. build 24-Feb-2020 17:47:24 Preparing to unpack .../liblzma-dev_5.1.1alpha+20120614-2ubuntu2_amd64.deb ... build 24-Feb-2020 17:47:24 Unpacking liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... build 24-Feb-2020 17:47:24 Selecting previously unselected package r-base-dev. build 24-Feb-2020 17:47:24 Preparing to unpack .../r-base-dev_3.4.4-1xenial0_all.deb ... build 24-Feb-2020 17:47:24 Unpacking r-base-dev (3.4.4-1xenial0) ... build 24-Feb-2020 17:47:25 Processing triggers for libc-bin (2.23-0ubuntu11) ... build 24-Feb-2020 17:47:25 Processing triggers for mime-support (3.59ubuntu1) ... build 24-Feb-2020 17:47:25 Setting up libgdbm3:amd64 (1.8.3-13.1) ... build 24-Feb-2020 17:47:25 Setting up libglib2.0-0:amd64 (2.48.2-0ubuntu4.4) ... build 24-Feb-2020 17:47:25 No schema files found: doing nothing. build 24-Feb-2020 17:47:25 Setting up libxau6:amd64 (1:1.0.8-1) ... build 24-Feb-2020 17:47:25 Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... build 24-Feb-2020 17:47:26 Setting up libxcb1:amd64 (1.11.1-1ubuntu1) ... build 24-Feb-2020 17:47:26 Setting up libx11-data (2:1.6.3-1ubuntu2.1) ... build 24-Feb-2020 17:47:26 Setting up libx11-6:amd64 (2:1.6.3-1ubuntu2.1) ... build 24-Feb-2020 17:47:26 Setting up libxext6:amd64 (2:1.3.3-1) ... build 24-Feb-2020 17:47:26 Setting up groff-base (1.22.3-7) ... build 24-Feb-2020 17:47:27 Setting up bsdmainutils (9.0.6ubuntu3) ... build 24-Feb-2020 17:47:27 update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode build 24-Feb-2020 17:47:27 update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode build 24-Feb-2020 17:47:27 Setting up libpipeline1:amd64 (1.4.1-2) ... build 24-Feb-2020 17:47:28 Setting up man-db (2.7.5-1) ... build 24-Feb-2020 17:47:28 debconf: unable to initialize frontend: Dialog build 24-Feb-2020 17:47:28 debconf: (TERM is not set, so the dialog frontend is not usable.) build 24-Feb-2020 17:47:28 debconf: falling back to frontend: Readline build 24-Feb-2020 17:47:28 Building database of manual pages ... build 24-Feb-2020 17:47:36 Setting up fonts-dejavu-core (2.35-1) ... build 24-Feb-2020 17:47:37 Setting up ucf (3.0036) ... build 24-Feb-2020 17:47:38 debconf: unable to initialize frontend: Dialog build 24-Feb-2020 17:47:38 debconf: (TERM is not set, so the dialog frontend is not usable.) build 24-Feb-2020 17:47:38 debconf: falling back to frontend: Readline build 24-Feb-2020 17:47:38 Setting up fontconfig-config (2.11.94-0ubuntu1.1) ... build 24-Feb-2020 17:47:40 Setting up libpng12-0:amd64 (1.2.54-1ubuntu1.1) ... build 24-Feb-2020 17:47:41 Setting up libfreetype6:amd64 (2.6.1-0.1ubuntu2.4) ... build 24-Feb-2020 17:47:41 Setting up libfontconfig1:amd64 (2.11.94-0ubuntu1.1) ... build 24-Feb-2020 17:47:41 Setting up fontconfig (2.11.94-0ubuntu1.1) ... build 24-Feb-2020 17:47:43 Regenerating fonts cache... done. build 24-Feb-2020 17:47:43 Setting up x11-common (1:7.7+13ubuntu3.1) ... build 24-Feb-2020 17:47:44 debconf: unable to initialize frontend: Dialog build 24-Feb-2020 17:47:44 debconf: (TERM is not set, so the dialog frontend is not usable.) build 24-Feb-2020 17:47:44 debconf: falling back to frontend: Readline build 24-Feb-2020 17:47:44 update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults build 24-Feb-2020 17:47:44 invoke-rc.d: could not determine current runlevel build 24-Feb-2020 17:47:44 invoke-rc.d: policy-rc.d denied execution of start. build 24-Feb-2020 17:47:45 Setting up libice6:amd64 (2:1.0.9-1) ... build 24-Feb-2020 17:47:45 Setting up libjpeg-turbo8:amd64 (1.4.2-0ubuntu3.3) ... build 24-Feb-2020 17:47:45 Setting up libpcrecpp0v5:amd64 (2:8.38-3.1) ... build 24-Feb-2020 17:47:46 Setting up libsigsegv2:amd64 (2.10-4) ... build 24-Feb-2020 17:47:46 Setting up libsm6:amd64 (2:1.2.2-1) ... build 24-Feb-2020 17:47:46 Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... build 24-Feb-2020 17:47:46 Setting up libxrender1:amd64 (1:0.9.9-0ubuntu1) ... build 24-Feb-2020 17:47:47 Setting up libxft2:amd64 (2.3.2-1) ... build 24-Feb-2020 17:47:47 Setting up libxss1:amd64 (1:1.2.2-1) ... build 24-Feb-2020 17:47:48 Setting up perl-modules-5.22 (5.22.1-9ubuntu0.6) ... build 24-Feb-2020 17:47:48 Setting up libperl5.22:amd64 (5.22.1-9ubuntu0.6) ... build 24-Feb-2020 17:47:48 Setting up perl (5.22.1-9ubuntu0.6) ... build 24-Feb-2020 17:47:48 update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode build 24-Feb-2020 17:47:48 Setting up libpython2.7-stdlib:amd64 (2.7.12-1ubuntu0~16.04.9) ... build 24-Feb-2020 17:47:48 Setting up python2.7 (2.7.12-1ubuntu0~16.04.9) ... build 24-Feb-2020 17:47:49 Setting up libpython-stdlib:amd64 (2.7.12-1~16.04) ... build 24-Feb-2020 17:47:50 Setting up python (2.7.12-1~16.04) ... build 24-Feb-2020 17:47:50 Setting up libjbig0:amd64 (2.1-3.1) ... build 24-Feb-2020 17:47:50 Setting up libmpfr4:amd64 (3.1.4-1) ... build 24-Feb-2020 17:47:50 Setting up libmpc3:amd64 (1.0.3-1) ... build 24-Feb-2020 17:47:50 Setting up tzdata (2019c-0ubuntu0.16.04) ... build 24-Feb-2020 17:47:50 debconf: unable to initialize frontend: Dialog build 24-Feb-2020 17:47:50 debconf: (TERM is not set, so the dialog frontend is not usable.) build 24-Feb-2020 17:47:50 debconf: falling back to frontend: Readline build 24-Feb-2020 17:47:50 build 24-Feb-2020 17:47:50 Current default time zone: 'Etc/UTC' build 24-Feb-2020 17:47:50 Local time is now: Mon Feb 24 23:47:50 UTC 2020. build 24-Feb-2020 17:47:50 Universal Time is now: Mon Feb 24 23:47:50 UTC 2020. build 24-Feb-2020 17:47:50 Run 'dpkg-reconfigure tzdata' if you wish to change it. build 24-Feb-2020 17:47:50 build 24-Feb-2020 17:47:51 Setting up bzip2 (1.0.6-8ubuntu0.2) ... build 24-Feb-2020 17:47:51 Setting up libmagic1:amd64 (1:5.25-2ubuntu1.3) ... build 24-Feb-2020 17:47:51 Setting up file (1:5.25-2ubuntu1.3) ... build 24-Feb-2020 17:47:51 Setting up netbase (5.3) ... build 24-Feb-2020 17:47:51 Setting up openssl (1.0.2g-1ubuntu4.15) ... build 24-Feb-2020 17:47:51 Setting up ca-certificates (20170717~16.04.2) ... build 24-Feb-2020 17:47:52 debconf: unable to initialize frontend: Dialog build 24-Feb-2020 17:47:52 debconf: (TERM is not set, so the dialog frontend is not usable.) build 24-Feb-2020 17:47:52 debconf: falling back to frontend: Readline build 24-Feb-2020 17:47:52 Setting up libasprintf0v5:amd64 (0.19.7-2ubuntu3.1) ... build 24-Feb-2020 17:47:53 Setting up gettext-base (0.19.7-2ubuntu3.1) ... build 24-Feb-2020 17:47:53 Setting up libicu55:amd64 (55.1-7ubuntu0.4) ... build 24-Feb-2020 17:47:53 Setting up libxml2:amd64 (2.9.3+dfsg1-1ubuntu0.7) ... build 24-Feb-2020 17:47:53 Setting up libxmuu1:amd64 (2:1.1.2-2) ... build 24-Feb-2020 17:47:53 Setting up xauth (1:1.0.9-1ubuntu2) ... build 24-Feb-2020 17:47:53 Setting up m4 (1.4.17-5) ... build 24-Feb-2020 17:47:53 Setting up autoconf (2.69-9) ... build 24-Feb-2020 17:47:54 Setting up autotools-dev (20150820.1) ... build 24-Feb-2020 17:47:54 Setting up automake (1:1.15-4ubuntu1) ... build 24-Feb-2020 17:47:54 update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode build 24-Feb-2020 17:47:54 Setting up binutils (2.26.1-1ubuntu1~16.04.8) ... build 24-Feb-2020 17:47:55 Setting up libc-dev-bin (2.23-0ubuntu11) ... build 24-Feb-2020 17:47:55 Setting up linux-libc-dev:amd64 (4.4.0-174.204) ... build 24-Feb-2020 17:47:55 Setting up libc6-dev:amd64 (2.23-0ubuntu11) ... build 24-Feb-2020 17:47:55 Setting up libisl15:amd64 (0.16.1-1) ... build 24-Feb-2020 17:47:55 Setting up cpp-5 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:47:55 Setting up cpp (4:5.3.1-1ubuntu1) ... build 24-Feb-2020 17:47:55 Setting up libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:47:56 Setting up libgomp1:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:47:56 Setting up libitm1:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:47:56 Setting up libatomic1:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:47:56 Setting up libasan2:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:47:56 Setting up liblsan0:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:47:56 Setting up libtsan0:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:47:56 Setting up libubsan0:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:47:57 Setting up libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:47:57 Setting up libmpx0:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:47:57 Setting up libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:47:57 Setting up libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:47:57 Setting up gcc-5 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:47:57 Setting up gcc (4:5.3.1-1ubuntu1) ... build 24-Feb-2020 17:47:58 Setting up libstdc++-5-dev:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:47:58 Setting up g++-5 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:47:58 Setting up g++ (4:5.3.1-1ubuntu1) ... build 24-Feb-2020 17:47:58 update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode build 24-Feb-2020 17:47:58 Setting up make (4.1-6) ... build 24-Feb-2020 17:47:58 Setting up libdpkg-perl (1.18.4ubuntu1.6) ... build 24-Feb-2020 17:47:58 Setting up xz-utils (5.1.1alpha+20120614-2ubuntu2) ... build 24-Feb-2020 17:47:58 update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode build 24-Feb-2020 17:47:58 Setting up patch (2.7.5-1ubuntu0.16.04.2) ... build 24-Feb-2020 17:47:59 Setting up dpkg-dev (1.18.4ubuntu1.6) ... build 24-Feb-2020 17:47:59 Setting up build-essential (12.1ubuntu2) ... build 24-Feb-2020 17:47:59 Setting up libcroco3:amd64 (0.6.11-1) ... build 24-Feb-2020 17:47:59 Setting up gettext (0.19.7-2ubuntu3.1) ... build 24-Feb-2020 17:47:59 Setting up intltool-debian (0.35.0+20060710.4) ... build 24-Feb-2020 17:47:59 Setting up po-debconf (1.0.19) ... build 24-Feb-2020 17:48:00 Setting up libarchive-zip-perl (1.56-2ubuntu0.1) ... build 24-Feb-2020 17:48:00 Setting up libfile-stripnondeterminism-perl (0.015-1) ... build 24-Feb-2020 17:48:00 Setting up libtimedate-perl (2.3000-2) ... build 24-Feb-2020 17:48:01 Setting up liburi-perl (1.71-1) ... build 24-Feb-2020 17:48:01 Setting up libencode-locale-perl (1.05-1) ... build 24-Feb-2020 17:48:01 Setting up libhttp-date-perl (6.02-1) ... build 24-Feb-2020 17:48:01 Setting up libfile-listing-perl (6.04-1) ... build 24-Feb-2020 17:48:01 Setting up libhtml-tagset-perl (3.20-2) ... build 24-Feb-2020 17:48:02 Setting up libhtml-parser-perl (3.72-1) ... build 24-Feb-2020 17:48:02 Setting up libhtml-tree-perl (5.03-2) ... build 24-Feb-2020 17:48:02 Setting up libio-html-perl (1.001-1) ... build 24-Feb-2020 17:48:02 Setting up liblwp-mediatypes-perl (6.02-1) ... build 24-Feb-2020 17:48:02 Setting up libhttp-message-perl (6.11-1) ... build 24-Feb-2020 17:48:02 Setting up libhttp-cookies-perl (6.01-1) ... build 24-Feb-2020 17:48:03 Setting up libhttp-negotiate-perl (6.00-2) ... build 24-Feb-2020 17:48:03 Setting up libnet-ssleay-perl (1.72-1build1) ... build 24-Feb-2020 17:48:03 Setting up libio-socket-ssl-perl (2.024-1) ... build 24-Feb-2020 17:48:03 Setting up libnet-http-perl (6.09-1) ... build 24-Feb-2020 17:48:03 Setting up libwww-robotrules-perl (6.01-1) ... build 24-Feb-2020 17:48:03 Setting up python-six (1.10.0-3) ... build 24-Feb-2020 17:48:04 Setting up python-pkg-resources (20.7.0-1) ... build 24-Feb-2020 17:48:05 Setting up python-scour (0.32-1) ... build 24-Feb-2020 17:48:06 Setting up libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:48:06 Setting up libgfortran-5-dev:amd64 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:48:07 Setting up gfortran-5 (5.4.0-6ubuntu1~16.04.12) ... build 24-Feb-2020 17:48:07 Setting up gfortran (4:5.3.1-1ubuntu1) ... build 24-Feb-2020 17:48:07 update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode build 24-Feb-2020 17:48:07 update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode build 24-Feb-2020 17:48:07 Setting up icu-devtools (55.1-7ubuntu0.4) ... build 24-Feb-2020 17:48:07 Setting up libblas-common (3.6.0-2ubuntu2) ... build 24-Feb-2020 17:48:07 Setting up libblas3 (3.6.0-2ubuntu2) ... build 24-Feb-2020 17:48:07 update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode build 24-Feb-2020 17:48:07 Setting up libblas-dev (3.6.0-2ubuntu2) ... build 24-Feb-2020 17:48:08 update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode build 24-Feb-2020 17:48:08 Setting up libbz2-dev:amd64 (1.0.6-8ubuntu0.2) ... build 24-Feb-2020 17:48:08 Setting up libpixman-1-0:amd64 (0.33.6-1) ... build 24-Feb-2020 17:48:08 Setting up libxcb-render0:amd64 (1.11.1-1ubuntu1) ... build 24-Feb-2020 17:48:08 Setting up libxcb-shm0:amd64 (1.11.1-1ubuntu1) ... build 24-Feb-2020 17:48:09 Setting up libcairo2:amd64 (1.14.6-1) ... build 24-Feb-2020 17:48:09 Setting up libcurl3:amd64 (7.47.0-1ubuntu2.14) ... build 24-Feb-2020 17:48:09 Setting up libdatrie1:amd64 (0.2.10-2) ... build 24-Feb-2020 17:48:09 Setting up libgraphite2-3:amd64 (1.3.10-0ubuntu0.16.04.1) ... build 24-Feb-2020 17:48:09 Setting up libharfbuzz0b:amd64 (1.0.1-1ubuntu0.1) ... build 24-Feb-2020 17:48:10 Setting up libicu-dev:amd64 (55.1-7ubuntu0.4) ... build 24-Feb-2020 17:48:10 Setting up libjpeg-turbo8-dev:amd64 (1.4.2-0ubuntu3.3) ... build 24-Feb-2020 17:48:10 Setting up libjpeg8:amd64 (8c-2ubuntu8) ... build 24-Feb-2020 17:48:10 Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... build 24-Feb-2020 17:48:10 Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... build 24-Feb-2020 17:48:10 Setting up liblapack3 (3.6.0-2ubuntu2) ... build 24-Feb-2020 17:48:10 update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode build 24-Feb-2020 17:48:10 Setting up liblapack-dev (3.6.0-2ubuntu2) ... build 24-Feb-2020 17:48:10 update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode build 24-Feb-2020 17:48:10 Setting up libtinfo-dev:amd64 (6.0+20160213-1ubuntu1) ... build 24-Feb-2020 17:48:11 Setting up libncurses5-dev:amd64 (6.0+20160213-1ubuntu1) ... build 24-Feb-2020 17:48:11 Setting up libthai-data (0.1.24-2) ... build 24-Feb-2020 17:48:11 Setting up libthai0:amd64 (0.1.24-2) ... build 24-Feb-2020 17:48:11 Setting up libpango-1.0-0:amd64 (1.38.1-1) ... build 24-Feb-2020 17:48:11 Setting up libpangoft2-1.0-0:amd64 (1.38.1-1) ... build 24-Feb-2020 17:48:11 Setting up libpangocairo-1.0-0:amd64 (1.38.1-1) ... build 24-Feb-2020 17:48:11 Setting up libpaper1:amd64 (1.1.24+nmu4ubuntu1) ... build 24-Feb-2020 17:48:12 debconf: unable to initialize frontend: Dialog build 24-Feb-2020 17:48:12 debconf: (TERM is not set, so the dialog frontend is not usable.) build 24-Feb-2020 17:48:12 debconf: falling back to frontend: Readline build 24-Feb-2020 17:48:12 build 24-Feb-2020 17:48:12 Creating config file /etc/papersize with new version build 24-Feb-2020 17:48:12 Setting up libpaper-utils (1.1.24+nmu4ubuntu1) ... build 24-Feb-2020 17:48:12 Setting up libpcre16-3:amd64 (2:8.38-3.1) ... build 24-Feb-2020 17:48:12 Setting up libpcre32-3:amd64 (2:8.38-3.1) ... build 24-Feb-2020 17:48:12 Setting up libpcre3-dev:amd64 (2:8.38-3.1) ... build 24-Feb-2020 17:48:12 Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4.3) ... build 24-Feb-2020 17:48:12 Setting up libpng12-dev:amd64 (1.2.54-1ubuntu1.1) ... build 24-Feb-2020 17:48:13 Setting up libreadline6-dev:amd64 (6.3-8ubuntu2) ... build 24-Feb-2020 17:48:13 Setting up libreadline-dev:amd64 (6.3-8ubuntu2) ... build 24-Feb-2020 17:48:14 Setting up libtcl8.6:amd64 (8.6.5+dfsg-2) ... build 24-Feb-2020 17:48:14 Setting up libtiff5:amd64 (4.0.6-1ubuntu0.7) ... build 24-Feb-2020 17:48:14 Setting up libtk8.6:amd64 (8.6.5-1) ... build 24-Feb-2020 17:48:14 Setting up libxt6:amd64 (1:1.1.5-0ubuntu1) ... build 24-Feb-2020 17:48:14 Setting up pkg-config (0.29.1-0ubuntu1) ... build 24-Feb-2020 17:48:15 Setting up zip (3.0-11) ... build 24-Feb-2020 17:48:15 Setting up unzip (6.0-20ubuntu1) ... build 24-Feb-2020 17:48:15 Setting up xdg-utils (1.1.1-1ubuntu1.16.04.3) ... build 24-Feb-2020 17:48:15 Setting up r-base-core (3.4.4-1xenial0) ... build 24-Feb-2020 17:48:15 debconf: unable to initialize frontend: Dialog build 24-Feb-2020 17:48:15 debconf: (TERM is not set, so the dialog frontend is not usable.) build 24-Feb-2020 17:48:15 debconf: falling back to frontend: Readline build 24-Feb-2020 17:48:15 build 24-Feb-2020 17:48:15 Creating config file /etc/R/Renviron with new version build 24-Feb-2020 17:48:16 Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... build 24-Feb-2020 17:48:16 Setting up debhelper (9.20160115ubuntu3) ... build 24-Feb-2020 17:48:16 Setting up libwww-perl (6.15-1) ... build 24-Feb-2020 17:48:16 Setting up libxml-parser-perl (2.44-1build1) ... build 24-Feb-2020 17:48:16 Setting up intltool (0.51.0-2ubuntu1.16.04.1) ... build 24-Feb-2020 17:48:16 Setting up dh-translations (129) ... build 24-Feb-2020 17:48:16 Setting up cdbs (0.4.130ubuntu2) ... build 24-Feb-2020 17:48:17 Setting up r-base-dev (3.4.4-1xenial0) ... build 24-Feb-2020 17:48:17 Setting up dh-strip-nondeterminism (0.015-1) ... build 24-Feb-2020 17:48:17 Setting up liblwp-protocol-https-perl (6.06-2) ... build 24-Feb-2020 17:48:18 Processing triggers for libc-bin (2.23-0ubuntu11) ... build 24-Feb-2020 17:48:18 Processing triggers for systemd (229-4ubuntu21.27) ... build 24-Feb-2020 17:48:18 Processing triggers for ca-certificates (20170717~16.04.2) ... build 24-Feb-2020 17:48:18 Updating certificates in /etc/ssl/certs... build 24-Feb-2020 17:48:20 148 added, 0 removed; done. build 24-Feb-2020 17:48:20 Running hooks in /etc/ca-certificates/update.d... build 24-Feb-2020 17:48:20 done. build 24-Feb-2020 17:48:20 Installing package into '/usr/local/lib/R/site-library' build 24-Feb-2020 17:48:20 (as 'lib' is unspecified) build 24-Feb-2020 17:48:21 trying URL 'http://cran.rstudio.com/src/contrib/jsonlite_1.6.1.tar.gz' build 24-Feb-2020 17:48:21 Content type 'application/x-gzip' length 1057910 bytes (1.0 MB) build 24-Feb-2020 17:48:21 ================================================== build 24-Feb-2020 17:48:21 downloaded 1.0 MB build 24-Feb-2020 17:48:21 build 24-Feb-2020 17:48:22 * installing *source* package 'jsonlite' ... build 24-Feb-2020 17:48:22 ** package 'jsonlite' successfully unpacked and MD5 sums checked build 24-Feb-2020 17:48:22 ** libs build 24-Feb-2020 17:48:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base64.c -o base64.o build 24-Feb-2020 17:48:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_array.c -o collapse_array.o build 24-Feb-2020 17:48:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_object.c -o collapse_object.o build 24-Feb-2020 17:48:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_pretty.c -o collapse_pretty.o build 24-Feb-2020 17:48:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c escape_chars.c -o escape_chars.o build 24-Feb-2020 17:48:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c integer64_to_na.c -o integer64_to_na.o build 24-Feb-2020 17:48:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_datelist.c -o is_datelist.o build 24-Feb-2020 17:48:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_recordlist.c -o is_recordlist.o build 24-Feb-2020 17:48:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_scalarlist.c -o is_scalarlist.o build 24-Feb-2020 17:48:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c modp_numtoa.c -o modp_numtoa.o build 24-Feb-2020 17:48:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c null_to_na.c -o null_to_na.o build 24-Feb-2020 17:48:22 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c num_to_char.c -o num_to_char.o build 24-Feb-2020 17:48:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c parse.c -o parse.o build 24-Feb-2020 17:48:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c prettify.c -o prettify.o build 24-Feb-2020 17:48:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c push_parser.c -o push_parser.o build 24-Feb-2020 17:48:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c r-base64.c -o r-base64.o build 24-Feb-2020 17:48:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c register.c -o register.o build 24-Feb-2020 17:48:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c row_collapse.c -o row_collapse.o build 24-Feb-2020 17:48:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transpose_list.c -o transpose_list.o build 24-Feb-2020 17:48:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c validate.c -o validate.o build 24-Feb-2020 17:48:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl.c -o yajl/yajl.o build 24-Feb-2020 17:48:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o build 24-Feb-2020 17:48:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_buf.c -o yajl/yajl_buf.o build 24-Feb-2020 17:48:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_encode.c -o yajl/yajl_encode.o build 24-Feb-2020 17:48:23 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_gen.c -o yajl/yajl_gen.o build 24-Feb-2020 17:48:24 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_lex.c -o yajl/yajl_lex.o build 24-Feb-2020 17:48:24 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_parser.c -o yajl/yajl_parser.o build 24-Feb-2020 17:48:24 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_tree.c -o yajl/yajl_tree.o build 24-Feb-2020 17:48:24 ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o build 24-Feb-2020 17:48:24 g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/usr/lib/R/lib -lR build 24-Feb-2020 17:48:24 installing to /usr/local/lib/R/site-library/jsonlite/libs build 24-Feb-2020 17:48:24 ** R build 24-Feb-2020 17:48:24 ** inst build 24-Feb-2020 17:48:24 ** preparing package for lazy loading build 24-Feb-2020 17:48:24 ** help build 24-Feb-2020 17:48:24 *** installing help indices build 24-Feb-2020 17:48:24 ** building package indices build 24-Feb-2020 17:48:24 ** installing vignettes build 24-Feb-2020 17:48:24 ** testing if installed package can be loaded build 24-Feb-2020 17:48:25 * DONE (jsonlite) build 24-Feb-2020 17:48:25  build 24-Feb-2020 17:48:25 The downloaded source packages are in build 24-Feb-2020 17:48:25 '/tmp/RtmpC1jf58/downloaded_packages' build 24-Feb-2020 17:48:25 [1] "/usr/local/lib/R/site-library/jsonlite" build 24-Feb-2020 17:48:32 Removing intermediate container 165f4cfc6970 build 24-Feb-2020 17:48:32 ---> 9145d98a33d5 build 24-Feb-2020 17:48:32 Step 5/11 : COPY r_extractor.py launcher.R /home/clowder/ build 24-Feb-2020 17:48:32 ---> 4d0a90140a86 build 24-Feb-2020 17:48:32 Step 6/11 : ONBUILD COPY packages.* Dockerfile /home/clowder/ build 24-Feb-2020 17:48:32 ---> Running in c1bed88e39f1 build 24-Feb-2020 17:48:32 Removing intermediate container c1bed88e39f1 build 24-Feb-2020 17:48:32 ---> 929664e251b9 build 24-Feb-2020 17:48:32 Step 7/11 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi build 24-Feb-2020 17:48:33 ---> Running in 92d82742b8d4 build 24-Feb-2020 17:48:33 Removing intermediate container 92d82742b8d4 build 24-Feb-2020 17:48:33 ---> 75183863e5c6 build 24-Feb-2020 17:48:33 Step 8/11 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ build 24-Feb-2020 17:48:33 ---> Running in 805650e5669d build 24-Feb-2020 17:48:33 Removing intermediate container 805650e5669d build 24-Feb-2020 17:48:33 ---> 6f173e6a322f build 24-Feb-2020 17:48:33 Step 9/11 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi build 24-Feb-2020 17:48:33 ---> Running in 2de5e5c4174f build 24-Feb-2020 17:48:34 Removing intermediate container 2de5e5c4174f build 24-Feb-2020 17:48:34 ---> 85519962f10e build 24-Feb-2020 17:48:34 Step 10/11 : ONBUILD ADD . /home/clowder/ build 24-Feb-2020 17:48:34 ---> Running in c126351efdf1 build 24-Feb-2020 17:48:35 Removing intermediate container c126351efdf1 build 24-Feb-2020 17:48:35 ---> e4cdd14a6486 build 24-Feb-2020 17:48:35 Step 11/11 : CMD python r_extractor.py build 24-Feb-2020 17:48:35 ---> Running in 98848a4fddd0 build 24-Feb-2020 17:48:35 Removing intermediate container 98848a4fddd0 build 24-Feb-2020 17:48:35 ---> e58bc47a468a build 24-Feb-2020 17:48:35 Successfully built e58bc47a468a build 24-Feb-2020 17:48:35 Successfully tagged clowder/extractors-simple-r-extractor-python3:onbuild build 24-Feb-2020 17:48:35 Sending build context to Docker daemon 9.216kB build 24-Feb-2020 17:48:35 build 24-Feb-2020 17:48:35 Step 1/3 : ARG PYCLOWDER_PYTHON="" build 24-Feb-2020 17:48:35 Step 2/3 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:onbuild build 24-Feb-2020 17:48:35 # Executing 5 build triggers build 24-Feb-2020 17:48:36 ---> Running in a53978c9a8cb build 24-Feb-2020 17:48:38 Removing intermediate container a53978c9a8cb build 24-Feb-2020 17:48:38 ---> Running in 246d75e7bf05 build 24-Feb-2020 17:48:40 Removing intermediate container 246d75e7bf05 build 24-Feb-2020 17:48:41 ---> 8b04b58b2e98 build 24-Feb-2020 17:48:41 Step 3/3 : ENV MAIN_SCRIPT="wordcount.py" build 24-Feb-2020 17:48:41 ---> Running in 305dff50133e build 24-Feb-2020 17:48:41 Removing intermediate container 305dff50133e build 24-Feb-2020 17:48:41 ---> 72a369308d5d build 24-Feb-2020 17:48:41 Successfully built 72a369308d5d build 24-Feb-2020 17:48:41 Successfully tagged clowder/extractors-wordcount:latest build 24-Feb-2020 17:48:41 Sending build context to Docker daemon 5.12kB build 24-Feb-2020 17:48:41 build 24-Feb-2020 17:48:41 Step 1/4 : ARG PYCLOWDER_PYTHON="" build 24-Feb-2020 17:48:41 Step 2/4 : FROM clowder/extractors-simple-extractor${PYCLOWDER_PYTHON}:onbuild build 24-Feb-2020 17:48:41 # Executing 5 build triggers build 24-Feb-2020 17:48:42 ---> Running in 92b6f71c8033 build 24-Feb-2020 17:48:43 Removing intermediate container 92b6f71c8033 build 24-Feb-2020 17:48:44 ---> Running in 29b01488eb92 build 24-Feb-2020 17:48:46 Removing intermediate container 29b01488eb92 build 24-Feb-2020 17:48:46 ---> 44b6013cf68c build 24-Feb-2020 17:48:46 Step 3/4 : ENV EXTRACTION_FUNC="wordcount" build 24-Feb-2020 17:48:46 ---> Running in 153bb161c087 build 24-Feb-2020 17:48:47 Removing intermediate container 153bb161c087 build 24-Feb-2020 17:48:47 ---> bdcb7c05d5a9 build 24-Feb-2020 17:48:47 Step 4/4 : ENV EXTRACTION_MODULE="wordcount" build 24-Feb-2020 17:48:47 ---> Running in c93afbac2dbc build 24-Feb-2020 17:48:48 Removing intermediate container c93afbac2dbc build 24-Feb-2020 17:48:48 ---> 5d664f26012c build 24-Feb-2020 17:48:48 Successfully built 5d664f26012c build 24-Feb-2020 17:48:48 Successfully tagged clowder/extractors-wordcount-simple-extractor:latest build 24-Feb-2020 17:48:48 Sending build context to Docker daemon 5.12kB build 24-Feb-2020 17:48:48 build 24-Feb-2020 17:48:48 Step 1/3 : ARG PYCLOWDER_PYTHON="" build 24-Feb-2020 17:48:48 Step 2/3 : FROM clowder/extractors-simple-r-extractor${PYCLOWDER_PYTHON}:onbuild build 24-Feb-2020 17:48:48 # Executing 5 build triggers build 24-Feb-2020 17:48:49 ---> Running in bc41ff804b63 build 24-Feb-2020 17:48:50 Removing intermediate container bc41ff804b63 build 24-Feb-2020 17:48:51 ---> Running in 7ee7af302359 build 24-Feb-2020 17:48:53 Removing intermediate container 7ee7af302359 build 24-Feb-2020 17:48:53 ---> 907c6403dec2 build 24-Feb-2020 17:48:53 Step 3/3 : ENV R_SCRIPT="wordcount.R" R_FUNCTION="process_file" build 24-Feb-2020 17:48:53 ---> Running in 129b99056387 build 24-Feb-2020 17:48:54 Removing intermediate container 129b99056387 build 24-Feb-2020 17:48:54 ---> 468bcb68532e build 24-Feb-2020 17:48:54 Successfully built 468bcb68532e build 24-Feb-2020 17:48:54 Successfully tagged clowder/extractors-wordcount-simple-r-extractor:latest simple 24-Feb-2020 17:48:54 Finished task 'docker build and push' with result: Success simple 24-Feb-2020 17:48:54 Running post build plugin 'Docker Container Cleanup' simple 24-Feb-2020 17:48:54 Running post build plugin 'NCover Results Collector' simple 24-Feb-2020 17:48:54 Running post build plugin 'Clover Results Collector' simple 24-Feb-2020 17:48:54 Running post build plugin 'npm Cache Cleanup' simple 24-Feb-2020 17:48:54 Running post build plugin 'Artifact Copier' simple 24-Feb-2020 17:48:54 Finalising the build... simple 24-Feb-2020 17:48:54 Stopping timer. simple 24-Feb-2020 17:48:54 Build CATS-PYC58-JOB1-11 completed. simple 24-Feb-2020 17:48:54 Running on server: post build plugin 'NCover Results Collector' simple 24-Feb-2020 17:48:54 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 24-Feb-2020 17:48:54 Running on server: post build plugin 'Clover Delta Calculator' simple 24-Feb-2020 17:48:54 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 24-Feb-2020 17:48:54 All post build plugins have finished simple 24-Feb-2020 17:48:54 Generating build results summary... simple 24-Feb-2020 17:48:54 Saving build results to disk... simple 24-Feb-2020 17:48:54 Logging substituted variables... simple 24-Feb-2020 17:48:54 Indexing build results... simple 24-Feb-2020 17:48:54 Finished building CATS-PYC58-JOB1-11.