simple	07-Feb-2019 14:57:41	Build Clowder - semanticextractor - feature-BD-2323-semantic-extractor-will-post-annotation-to-semantic-service - Default Job #2 (CATS-SEM2-JOB1-2) started building on agent buildserver-3.os.ncsa.edu
simple	07-Feb-2019 14:57:41	Remote agent on host buildserver-3.os.ncsa.edu
simple	07-Feb-2019 14:57:41	Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-SEM2-JOB1
simple	07-Feb-2019 14:57:41	Executing build Clowder - semanticextractor - feature-BD-2323-semantic-extractor-will-post-annotation-to-semantic-service - Default Job #2 (CATS-SEM2-JOB1-2)
simple	07-Feb-2019 14:57:41	Starting task 'Source Code Checkout' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
simple	07-Feb-2019 14:57:41	Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-SEM2-JOB1
simple	07-Feb-2019 14:57:41	Updating source code to revision: a5fa519e0a37f43200b3d7ef0d1a6d2ec2c0220a
simple	07-Feb-2019 14:57:41	Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-SEM2-JOB1/.git'.
simple	07-Feb-2019 14:57:41	Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-SEM2-JOB1/.git/
simple	07-Feb-2019 14:57:41	Fetching 'refs/heads/feature/BD-2323-semantic-extractor-will-post-annotation-to-semantic-service' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-semantic-mappings.git'. Will try to do a shallow fetch.
simple	07-Feb-2019 14:57:41	Warning: Permanently added '[127.0.0.1]:35249' (RSA) to the list of known hosts.
simple	07-Feb-2019 14:57:41	From ssh://127.0.0.1:35249/cats/extractors-semantic-mappings
simple	07-Feb-2019 14:57:41	 * [new branch]      feature/BD-2323-semantic-extractor-will-post-annotation-to-semantic-service -> feature/BD-2323-semantic-extractor-will-post-annotation-to-semantic-service
simple	07-Feb-2019 14:57:41	Checking out revision a5fa519e0a37f43200b3d7ef0d1a6d2ec2c0220a.
simple	07-Feb-2019 14:57:41	Switched to branch 'feature/BD-2323-semantic-extractor-will-post-annotation-to-semantic-service'
simple	07-Feb-2019 14:57:41	Updated source code to revision: a5fa519e0a37f43200b3d7ef0d1a6d2ec2c0220a
simple	07-Feb-2019 14:57:41	Finished task 'Source Code Checkout' with result: Success
simple	07-Feb-2019 14:57:41	Running pre-build action: VCS Version Collector
simple	07-Feb-2019 14:57:41	Starting task 'docker build and push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
command	07-Feb-2019 14:57:41	Beginning to execute external process for build 'Clowder - semanticextractor - feature-BD-2323-semantic-extractor-will-post-annotation-to-semantic-service - Default Job #2 (CATS-SEM2-JOB1-2)'\n ... running command line: \n/bin/sh docker.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-SEM2-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=feature/BD-2323-semantic-extractor-will-post-annotation-to-semantic-service\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_planRepository_1_branchDisplayName=feature/BD-2323-semantic-extractor-will-post-annotation-to-semantic-service\nbamboo_repository_revision_number=a5fa519e0a37f43200b3d7ef0d1a6d2ec2c0220a\nbamboo_repository_166953010_git_branch=feature/BD-2323-semantic-extractor-will-post-annotation-to-semantic-service\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-SEM2-JOB1-2\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-SEM2-JOB1\nbamboo_planRepository_1_name=extractors-semantic-mappings\nbamboo_buildKey=CATS-SEM2-JOB1\nbamboo_capability_system_os=linux\nbamboo_repository_166953010_previous_revision_number=4de4220fc51640998d9ffb522d79f7d4febf81a4\nbamboo_shortPlanName=feature-BD-2323-semantic-extractor-will-post-annotation-to-semantic-service\nbamboo_planRepository_name=extractors-semantic-mappings\nbamboo_buildNumber=2\nbamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-SEM2-JOB1-2\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-semantic-mappings.git\nbamboo_agentId=143032321\nbamboo_planName=Clowder - semanticextractor - feature-BD-2323-semantic-extractor-will-post-annotation-to-semantic-service\nbamboo_shortPlanKey=SEM2\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_shortJobKey=JOB1\nbamboo_repository_166953010_revision_number=a5fa519e0a37f43200b3d7ef0d1a6d2ec2c0220a\nbamboo_planRepository_revision=a5fa519e0a37f43200b3d7ef0d1a6d2ec2c0220a\nbamboo_buildTimeStamp=2019-02-07T14:57:41.026-06:00\nbamboo_repository_previous_revision_number=4de4220fc51640998d9ffb522d79f7d4febf81a4\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_planRepository_previousRevision=4de4220fc51640998d9ffb522d79f7d4febf81a4\nbamboo_repository_git_branch=feature/BD-2323-semantic-extractor-will-post-annotation-to-semantic-service\nbamboo_buildResultKey=CATS-SEM2-JOB1-2\nbamboo_repository_branch_name=feature/BD-2323-semantic-extractor-will-post-annotation-to-semantic-service\nbamboo_buildPlanName=Clowder - semanticextractor - feature-BD-2323-semantic-extractor-will-post-annotation-to-semantic-service - Default Job\nbamboo_planRepository_1_revision=a5fa519e0a37f43200b3d7ef0d1a6d2ec2c0220a\nbamboo_repository_166953010_git_username=\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=extractors-semantic-mappings\nbamboo_repository_166953010_branch_name=feature/BD-2323-semantic-extractor-will-post-annotation-to-semantic-service\nbamboo_repository_166953010_name=extractors-semantic-mappings\nbamboo_buildFailed=false\nbamboo_repository_166953010_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-semantic-mappings.git\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_branch=feature/BD-2323-semantic-extractor-will-post-annotation-to-semantic-service\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=4de4220fc51640998d9ffb522d79f7d4febf81a4\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_planRepository_branchDisplayName=feature/BD-2323-semantic-extractor-will-post-annotation-to-semantic-service\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=feature/BD-2323-semantic-extractor-will-post-annotation-to-semantic-service\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-166756451\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-semantic-mappings.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-SEM2-JOB1\nbamboo_planKey=CATS-SEM2\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-semantic-mappings.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_1_branchName=feature/BD-2323-semantic-extractor-will-post-annotation-to-semantic-service\n
build	07-Feb-2019 14:57:41	Sending build context to Docker daemon  71.17kB
build	07-Feb-2019 14:57:41	
build	07-Feb-2019 14:57:42	Step 1/3 : FROM clowder/extractors-simple-extractor:onbuild
build	07-Feb-2019 14:57:42	onbuild: Pulling from clowder/extractors-simple-extractor
build	07-Feb-2019 14:57:42	b234f539f7a1: Pulling fs layer
build	07-Feb-2019 14:57:42	55172d420b43: Pulling fs layer
build	07-Feb-2019 14:57:42	5ba5bbeb6b91: Pulling fs layer
build	07-Feb-2019 14:57:42	43ae2841ad7a: Pulling fs layer
build	07-Feb-2019 14:57:42	f6c9c6de4190: Pulling fs layer
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build	07-Feb-2019 14:57:42	1676cf8b46e7: Pulling fs layer
build	07-Feb-2019 14:57:42	4cb456f25c1c: Pulling fs layer
build	07-Feb-2019 14:57:42	814fb0164599: Pulling fs layer
build	07-Feb-2019 14:57:42	65c9b6125188: Pulling fs layer
build	07-Feb-2019 14:57:42	23cd88412af6: Pulling fs layer
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build	07-Feb-2019 14:57:42	9f4e3db137aa: Pulling fs layer
build	07-Feb-2019 14:57:42	43ae2841ad7a: Waiting
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build	07-Feb-2019 14:57:42	5ba5bbeb6b91: Verifying Checksum
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build	07-Feb-2019 14:57:46	b234f539f7a1: Pull complete
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build	07-Feb-2019 14:57:53	Digest: sha256:e9328b7204a0df11f05da9b2497189fa15042cc1655099a637dbe1301783316a
build	07-Feb-2019 14:57:54	Status: Downloaded newer image for clowder/extractors-simple-extractor:onbuild
build	07-Feb-2019 14:57:54	# Executing 5 build triggers
build	07-Feb-2019 14:57:54	 ---> Running in 17ba67177d3e
build	07-Feb-2019 14:57:56	Removing intermediate container 17ba67177d3e
build	07-Feb-2019 14:57:56	 ---> Running in 8ffbe76a8860
build	07-Feb-2019 14:57:58	Removing intermediate container 8ffbe76a8860
build	07-Feb-2019 14:57:59	 ---> 1f991ecaaad9
build	07-Feb-2019 14:57:59	Step 2/3 : ENV EXTRACTION_FUNC="semanticmappings"
build	07-Feb-2019 14:57:59	 ---> Running in 08f89fd88a08
build	07-Feb-2019 14:57:59	Removing intermediate container 08f89fd88a08
build	07-Feb-2019 14:57:59	 ---> 0cd15e3a3257
build	07-Feb-2019 14:57:59	Step 3/3 : ENV EXTRACTION_MODULE="semanticmappings"
build	07-Feb-2019 14:58:00	 ---> Running in 2f4327e3fab1
build	07-Feb-2019 14:58:00	Removing intermediate container 2f4327e3fab1
build	07-Feb-2019 14:58:00	 ---> 38f1817bb0cc
build	07-Feb-2019 14:58:00	Successfully built 38f1817bb0cc
build	07-Feb-2019 14:58:00	Successfully tagged clowder/extractors-semantic-mappings:latest
simple	07-Feb-2019 14:58:00	Finished task 'docker build and push' with result: Success
simple	07-Feb-2019 14:58:00	Running post build plugin 'Docker Container Cleanup'
simple	07-Feb-2019 14:58:00	Running post build plugin 'NCover Results Collector'
simple	07-Feb-2019 14:58:00	Running post build plugin 'Clover Results Collector'
simple	07-Feb-2019 14:58:00	Running post build plugin 'npm Cache Cleanup'
simple	07-Feb-2019 14:58:00	Running post build plugin 'Artifact Copier'
simple	07-Feb-2019 14:58:00	Finalising the build...
simple	07-Feb-2019 14:58:00	Stopping timer.
simple	07-Feb-2019 14:58:00	Build CATS-SEM2-JOB1-2 completed.
simple	07-Feb-2019 14:58:00	Running on server: post build plugin 'NCover Results Collector'
simple	07-Feb-2019 14:58:00	Running on server: post build plugin 'Build Hanging Detection Configuration'
simple	07-Feb-2019 14:58:00	Running on server: post build plugin 'Clover Delta Calculator'
simple	07-Feb-2019 14:58:00	Running on server: post build plugin 'Maven Dependencies Postprocessor'
simple	07-Feb-2019 14:58:00	All post build plugins have finished
simple	07-Feb-2019 14:58:00	Generating build results summary...
simple	07-Feb-2019 14:58:00	Saving build results to disk...
simple	07-Feb-2019 14:58:00	Logging substituted variables...
simple	07-Feb-2019 14:58:00	Indexing build results...
simple	07-Feb-2019 14:58:00	Finished building CATS-SEM2-JOB1-2.