simple 05-Jul-2016 20:03:08 Build Kurator - Yesworkflow-Feature - Build and test #20 (KURATOR-YSF-JOB1-20) started building on agent buildserver-2.ncsa.illinois.edu simple 05-Jul-2016 20:03:08 Remote Agent simple 05-Jul-2016 20:03:08 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/KURATOR-YSF-JOB1 simple 05-Jul-2016 20:03:08 Executing build Kurator - Yesworkflow-Feature - Build and test #20 (KURATOR-YSF-JOB1-20) simple 05-Jul-2016 20:03:08 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 05-Jul-2016 20:03:08 Updating source code to revision: a1d8f0d3dbb10e181371dabe8e739ddfe4bee259 simple 05-Jul-2016 20:03:08 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/KURATOR-YSF-JOB1/.git'. simple 05-Jul-2016 20:03:08 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/KURATOR-YSF-JOB1/.git/ simple 05-Jul-2016 20:03:08 Fetching 'refs/heads/*' from 'https://github.com/yesworkflow-org/yw-prototypes.git'. simple 05-Jul-2016 20:03:10 From https://github.com/yesworkflow-org/yw-prototypes simple 05-Jul-2016 20:03:10 * [new branch] log-file-parsing -> log-file-parsing simple 05-Jul-2016 20:03:10 * [new branch] master -> master simple 05-Jul-2016 20:03:10 * [new tag] v0.2.0 -> v0.2.0 simple 05-Jul-2016 20:03:10 * [new tag] idcc15practice -> idcc15practice simple 05-Jul-2016 20:03:10 * [new tag] spnhc2016_demo -> spnhc2016_demo simple 05-Jul-2016 20:03:10 Checking out revision a1d8f0d3dbb10e181371dabe8e739ddfe4bee259. simple 05-Jul-2016 20:03:10 Switched to branch 'log-file-parsing' simple 05-Jul-2016 20:03:10 Updated source code to revision: a1d8f0d3dbb10e181371dabe8e739ddfe4bee259 simple 05-Jul-2016 20:03:10 Finished task 'Checkout Default Repository' with result: Success simple 05-Jul-2016 20:03:10 Running pre-build action: VCS Version Collector simple 05-Jul-2016 20:03:10 Starting task 'clean package javadoc:jar' of type 'com.atlassian.bamboo.plugins.maven:task.builder.mvn3' command 05-Jul-2016 20:03:11 Beginning to execute external process for build 'Kurator - Yesworkflow-Feature - Build and test #20 (KURATOR-YSF-JOB1-20)'\n ... running command line: \n/home/bamboo/apache-maven-3.3.9/bin/mvn --batch-mode -Djava.io.tmpdir=/tmp/KURATOR-YSF-JOB1 clean package javadoc:jar\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/KURATOR-YSF-JOB1\n ... using extra environment variables: 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build 05-Jul-2016 20:03:15 [INFO] Scanning for projects... build 05-Jul-2016 20:03:18 [INFO] Inspecting build with total of 1 modules... build 05-Jul-2016 20:03:18 [INFO] Installing Nexus Staging features: build 05-Jul-2016 20:03:18 [INFO] ... total of 1 executions of maven-deploy-plugin replaced with nexus-staging-maven-plugin build 05-Jul-2016 20:03:18 [INFO] Downloading: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-resources-plugin/3.0.1/maven-resources-plugin-3.0.1.pom build 05-Jul-2016 20:03:19 [INFO] Downloaded: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-resources-plugin/3.0.1/maven-resources-plugin-3.0.1.pom (7 KB at 11.9 KB/sec) build 05-Jul-2016 20:03:19 [INFO] Downloading: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-plugins/30/maven-plugins-30.pom build 05-Jul-2016 20:03:19 [INFO] Downloaded: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-plugins/30/maven-plugins-30.pom (10 KB at 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[INFO] ------------------------------------------------------------------------ build 05-Jul-2016 20:03:19 [INFO] Building YesWorkflow Prototype 0.2.1-SNAPSHOT build 05-Jul-2016 20:03:19 [INFO] ------------------------------------------------------------------------ build 05-Jul-2016 20:03:20 [INFO] build 05-Jul-2016 20:03:20 [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ yesworkflow --- build 05-Jul-2016 20:03:20 [INFO] build 05-Jul-2016 20:03:20 [INFO] --- maven-resources-plugin:3.0.1:copy-resources (copy-resources) @ yesworkflow --- build 05-Jul-2016 20:03:20 [INFO] Downloading: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-component-annotations/1.6/plexus-component-annotations-1.6.pom build 05-Jul-2016 20:03:20 [INFO] Downloaded: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-component-annotations/1.6/plexus-component-annotations-1.6.pom (748 B at 48.7 KB/sec) build 05-Jul-2016 20:03:20 [INFO] Downloading: 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build 05-Jul-2016 20:03:24 [INFO] --- maven-resources-plugin:3.0.1:resources (default-resources) @ yesworkflow --- build 05-Jul-2016 20:03:24 [INFO] Using 'UTF-8' encoding to copy filtered resources. build 05-Jul-2016 20:03:24 [INFO] Copying 20 resources build 05-Jul-2016 20:03:24 [INFO] Copying 1 resource build 05-Jul-2016 20:03:24 [INFO] build 05-Jul-2016 20:03:24 [INFO] --- maven-compiler-plugin:3.2:compile (default-compile) @ yesworkflow --- build 05-Jul-2016 20:03:25 [INFO] Changes detected - recompiling the module! build 05-Jul-2016 20:03:25 [INFO] Compiling 92 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/KURATOR-YSF-JOB1/target/classes build 05-Jul-2016 20:03:28 [INFO] build 05-Jul-2016 20:03:28 [INFO] --- maven-dependency-plugin:2.8:copy-dependencies (copy) @ yesworkflow --- build 05-Jul-2016 20:03:30 [INFO] Copying commons-csv-1.1.jar to /home/bamboo/bamboo-agent-home/xml-data/build-dir/KURATOR-YSF-JOB1/target/dependency/commons-csv-1.1.jar build 05-Jul-2016 20:03:30 [INFO] Copying sqlite-jdbc-3.8.11.1.jar to /home/bamboo/bamboo-agent-home/xml-data/build-dir/KURATOR-YSF-JOB1/target/dependency/sqlite-jdbc-3.8.11.1.jar build 05-Jul-2016 20:03:30 [INFO] Copying hamcrest-core-1.3.jar to /home/bamboo/bamboo-agent-home/xml-data/build-dir/KURATOR-YSF-JOB1/target/dependency/hamcrest-core-1.3.jar build 05-Jul-2016 20:03:30 [INFO] Copying junit-4.11.jar to /home/bamboo/bamboo-agent-home/xml-data/build-dir/KURATOR-YSF-JOB1/target/dependency/junit-4.11.jar build 05-Jul-2016 20:03:30 [INFO] Copying jopt-simple-4.8.jar to /home/bamboo/bamboo-agent-home/xml-data/build-dir/KURATOR-YSF-JOB1/target/dependency/jopt-simple-4.8.jar build 05-Jul-2016 20:03:30 [INFO] Copying h2-1.3.176.jar to /home/bamboo/bamboo-agent-home/xml-data/build-dir/KURATOR-YSF-JOB1/target/dependency/h2-1.3.176.jar build 05-Jul-2016 20:03:30 [INFO] Copying snakeyaml-1.13.jar to /home/bamboo/bamboo-agent-home/xml-data/build-dir/KURATOR-YSF-JOB1/target/dependency/snakeyaml-1.13.jar build 05-Jul-2016 20:03:30 [INFO] Copying jooq-3.6.2.jar to /home/bamboo/bamboo-agent-home/xml-data/build-dir/KURATOR-YSF-JOB1/target/dependency/jooq-3.6.2.jar build 05-Jul-2016 20:03:30 [INFO] build 05-Jul-2016 20:03:30 [INFO] --- maven-resources-plugin:3.0.1:testResources (default-testResources) @ yesworkflow --- build 05-Jul-2016 20:03:30 [INFO] Using 'UTF-8' encoding to copy filtered resources. build 05-Jul-2016 20:03:30 [INFO] Copying 79 resources build 05-Jul-2016 20:03:30 [INFO] build 05-Jul-2016 20:03:30 [INFO] --- maven-compiler-plugin:3.2:testCompile (default-testCompile) @ yesworkflow --- build 05-Jul-2016 20:03:30 [INFO] Changes detected - recompiling the module! build 05-Jul-2016 20:03:30 [INFO] Compiling 32 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/KURATOR-YSF-JOB1/target/test-classes build 05-Jul-2016 20:03:31 [INFO] build 05-Jul-2016 20:03:31 [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ yesworkflow --- build 05-Jul-2016 20:03:31 [INFO] Surefire report directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/KURATOR-YSF-JOB1/target/surefire-reports build 05-Jul-2016 20:03:32 build 05-Jul-2016 20:03:32 ------------------------------------------------------- build 05-Jul-2016 20:03:32 T E S T S build 05-Jul-2016 20:03:32 ------------------------------------------------------- build 05-Jul-2016 20:03:32 Running org.yesworkflow.annotations.TestEnd build 05-Jul-2016 20:03:32 Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.07 sec build 05-Jul-2016 20:03:32 Running org.yesworkflow.annotations.TestParam build 05-Jul-2016 20:03:32 Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec build 05-Jul-2016 20:03:32 Running org.yesworkflow.annotations.TestIn build 05-Jul-2016 20:03:32 Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 sec build 05-Jul-2016 20:03:32 Running org.yesworkflow.annotations.TestOut build 05-Jul-2016 20:03:32 Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.011 sec build 05-Jul-2016 20:03:32 Running org.yesworkflow.annotations.TestBegin build 05-Jul-2016 20:03:32 Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec build 05-Jul-2016 20:03:32 Running org.yesworkflow.annotations.TestDesc build 05-Jul-2016 20:03:32 Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec build 05-Jul-2016 20:03:32 Running org.yesworkflow.annotations.TestInWithUri build 05-Jul-2016 20:03:32 Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec build 05-Jul-2016 20:03:32 Running org.yesworkflow.annotations.TestOutWithUri build 05-Jul-2016 20:03:32 Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec build 05-Jul-2016 20:03:32 Running org.yesworkflow.extract.TestDefaultExtractor build 05-Jul-2016 20:03:34 Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.515 sec build 05-Jul-2016 20:03:34 Running org.yesworkflow.extract.TestCommentMatcher_Bash build 05-Jul-2016 20:03:34 Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.223 sec build 05-Jul-2016 20:03:34 Running org.yesworkflow.extract.TestExtractFacts build 05-Jul-2016 20:03:34 Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.013 sec build 05-Jul-2016 20:03:34 Running org.yesworkflow.extract.TestCommentMatcher_Matlab build 05-Jul-2016 20:03:34 Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.369 sec build 05-Jul-2016 20:03:34 Running org.yesworkflow.extract.TestCommentMatcher_SAS build 05-Jul-2016 20:03:35 Tests run: 31, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.521 sec build 05-Jul-2016 20:03:35 Running org.yesworkflow.extract.TestSkeletonBuilder build 05-Jul-2016 20:03:35 Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.29 sec build 05-Jul-2016 20:03:35 Running org.yesworkflow.extract.TestCommentMatcher_Java build 05-Jul-2016 20:03:36 Tests run: 23, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.412 sec build 05-Jul-2016 20:03:36 Running org.yesworkflow.config.TestYWConfiguration build 05-Jul-2016 20:03:36 Tests run: 47, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.188 sec build 05-Jul-2016 20:03:36 Running org.yesworkflow.db.TestYesWorkflowDB build 05-Jul-2016 20:03:36 Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.156 sec build 05-Jul-2016 20:03:36 Running org.yesworkflow.db.TestYesWorkflowDBViews build 05-Jul-2016 20:03:36 Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 sec build 05-Jul-2016 20:03:36 Running org.yesworkflow.cli.TestYesWorkflowCLI build 05-Jul-2016 20:03:37 Tests run: 26, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.729 sec build 05-Jul-2016 20:03:37 Running org.yesworkflow.graph.TestDotGrapher_CombinedView build 05-Jul-2016 20:03:37 Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.344 sec build 05-Jul-2016 20:03:37 Running org.yesworkflow.graph.TestDotGrapher_ProcessView build 05-Jul-2016 20:03:38 Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.676 sec build 05-Jul-2016 20:03:38 Running org.yesworkflow.graph.TestDotGrapher_SimulateDataCollection build 05-Jul-2016 20:03:38 Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec build 05-Jul-2016 20:03:38 Running org.yesworkflow.graph.TestDotGrapher_DataView build 05-Jul-2016 20:03:38 Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.175 sec build 05-Jul-2016 20:03:38 Running org.yesworkflow.data.TestUriBase build 05-Jul-2016 20:03:38 Tests run: 23, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.011 sec build 05-Jul-2016 20:03:38 Running org.yesworkflow.data.TestUriTemplate build 05-Jul-2016 20:03:38 Tests run: 39, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.023 sec build 05-Jul-2016 20:03:38 Running org.yesworkflow.data.TestUri build 05-Jul-2016 20:03:38 Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec build 05-Jul-2016 20:03:38 Running org.yesworkflow.data.TestLogEntryTemplate build 05-Jul-2016 20:03:38 Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec build 05-Jul-2016 20:03:38 Running org.yesworkflow.recon.TestDefaultReconstructor build 05-Jul-2016 20:03:38 Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.199 sec build 05-Jul-2016 20:03:38 Running org.yesworkflow.model.TestDefaultModer_ExtractTopPorts build 05-Jul-2016 20:03:38 Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 sec build 05-Jul-2016 20:03:38 Running org.yesworkflow.model.TestModeler_Functions build 05-Jul-2016 20:03:38 Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.099 sec build 05-Jul-2016 20:03:38 Running org.yesworkflow.model.TestDefaultModeler build 05-Jul-2016 20:03:39 Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.379 sec build 05-Jul-2016 20:03:39 build 05-Jul-2016 20:03:39 Results : build 05-Jul-2016 20:03:39 build 05-Jul-2016 20:03:39 Tests run: 376, Failures: 0, Errors: 0, Skipped: 0 build 05-Jul-2016 20:03:39 build 05-Jul-2016 20:03:39 [INFO] build 05-Jul-2016 20:03:39 [INFO] --- maven-jar-plugin:2.6:jar (default-jar) @ yesworkflow --- build 05-Jul-2016 20:03:40 [INFO] Building jar: /home/bamboo/bamboo-agent-home/xml-data/build-dir/KURATOR-YSF-JOB1/target/yesworkflow-0.2.1-SNAPSHOT.jar build 05-Jul-2016 20:03:40 [INFO] build 05-Jul-2016 20:03:40 [INFO] --- maven-javadoc-plugin:2.10.1:jar (attach-javadocs) @ yesworkflow --- build 05-Jul-2016 20:03:47 [INFO] build 05-Jul-2016 20:03:47 Loading source files for package org.yesworkflow.annotations... build 05-Jul-2016 20:03:47 Loading source files for package org.yesworkflow.extract... build 05-Jul-2016 20:03:47 Loading source files for package org.yesworkflow.query... build 05-Jul-2016 20:03:47 Loading 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Generating /home/bamboo/bamboo-agent-home/xml-data/build-dir/KURATOR-YSF-JOB1/target/apidocs/org/yesworkflow/extract/package-use.html... build 05-Jul-2016 20:03:59 Generating /home/bamboo/bamboo-agent-home/xml-data/build-dir/KURATOR-YSF-JOB1/target/apidocs/org/yesworkflow/graph/package-use.html... build 05-Jul-2016 20:03:59 Generating /home/bamboo/bamboo-agent-home/xml-data/build-dir/KURATOR-YSF-JOB1/target/apidocs/org/yesworkflow/model/package-use.html... build 05-Jul-2016 20:03:59 Generating /home/bamboo/bamboo-agent-home/xml-data/build-dir/KURATOR-YSF-JOB1/target/apidocs/org/yesworkflow/query/package-use.html... build 05-Jul-2016 20:03:59 Generating /home/bamboo/bamboo-agent-home/xml-data/build-dir/KURATOR-YSF-JOB1/target/apidocs/org/yesworkflow/recon/package-use.html... build 05-Jul-2016 20:03:59 Generating /home/bamboo/bamboo-agent-home/xml-data/build-dir/KURATOR-YSF-JOB1/target/apidocs/org/yesworkflow/util/package-use.html... build 05-Jul-2016 20:03:59 Building index for all the packages and classes... build 05-Jul-2016 20:03:59 Generating /home/bamboo/bamboo-agent-home/xml-data/build-dir/KURATOR-YSF-JOB1/target/apidocs/overview-tree.html... build 05-Jul-2016 20:03:59 Generating /home/bamboo/bamboo-agent-home/xml-data/build-dir/KURATOR-YSF-JOB1/target/apidocs/index-all.html... build 05-Jul-2016 20:03:59 Generating /home/bamboo/bamboo-agent-home/xml-data/build-dir/KURATOR-YSF-JOB1/target/apidocs/deprecated-list.html... build 05-Jul-2016 20:03:59 Building index for all classes... build 05-Jul-2016 20:03:59 Generating /home/bamboo/bamboo-agent-home/xml-data/build-dir/KURATOR-YSF-JOB1/target/apidocs/allclasses-frame.html... build 05-Jul-2016 20:03:59 Generating /home/bamboo/bamboo-agent-home/xml-data/build-dir/KURATOR-YSF-JOB1/target/apidocs/allclasses-noframe.html... build 05-Jul-2016 20:03:59 Generating /home/bamboo/bamboo-agent-home/xml-data/build-dir/KURATOR-YSF-JOB1/target/apidocs/index.html... build 05-Jul-2016 20:03:59 Generating 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results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/KURATOR-YSF-JOB1... simple 05-Jul-2016 20:04:00 Finished task 'clean package javadoc:jar' with result: Success simple 05-Jul-2016 20:04:00 Running post build plugin 'Docker Container Cleanup' simple 05-Jul-2016 20:04:00 Running post build plugin 'NCover Results Collector' simple 05-Jul-2016 20:04:00 Running post build plugin 'Clover Results Collector' simple 05-Jul-2016 20:04:00 Running post build plugin 'npm Cache Cleanup' simple 05-Jul-2016 20:04:00 Running post build plugin 'Artifact Copier' simple 05-Jul-2016 20:04:00 Publishing an artifact: executable jar simple 05-Jul-2016 20:04:01 Finished publishing of artifact Job artifact: [executable jar], pattern: [*-with-dependencies.jar] anchored at: [target] in 1.175 s simple 05-Jul-2016 20:04:01 Publishing an artifact: javadoc jar simple 05-Jul-2016 20:04:01 Finished publishing of artifact Job artifact: [javadoc jar], pattern: [*javadoc.jar] anchored at: [target] in 161.8 ms simple 05-Jul-2016 20:04:01 Publishing an artifact: minimum jar simple 05-Jul-2016 20:04:01 Finished publishing of artifact Job artifact: [minimum jar], pattern: [*-SNAPSHOT.jar] anchored at: [target] in 219.5 ms simple 05-Jul-2016 20:04:01 Finalising the build... simple 05-Jul-2016 20:04:01 Stopping timer. simple 05-Jul-2016 20:04:01 Build KURATOR-YSF-JOB1-20 completed. simple 05-Jul-2016 20:04:01 Running on server: post build plugin 'NCover Results Collector' simple 05-Jul-2016 20:04:01 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 05-Jul-2016 20:04:01 Running on server: post build plugin 'Clover Delta Calculator' simple 05-Jul-2016 20:04:01 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 05-Jul-2016 20:04:01 All post build plugins have finished simple 05-Jul-2016 20:04:02 Generating build results summary... simple 05-Jul-2016 20:04:02 Saving build results to disk... simple 05-Jul-2016 20:04:02 Logging substituted variables... simple 05-Jul-2016 20:04:02 Indexing build results... simple 05-Jul-2016 20:04:02 Finished building KURATOR-YSF-JOB1-20.