simple 31-Oct-2014 01:55:45 Build MMDB - Medici 1 GWT - default #91 (MMDB-MEDICI-JOB1-91) started building on agent snuffy.ncsa.illinois.edu simple 31-Oct-2014 01:55:45 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1 simple 31-Oct-2014 01:55:45 Executing build MMDB - Medici 1 GWT - default #91 (MMDB-MEDICI-JOB1-91) simple 31-Oct-2014 01:55:45 Starting task 'Source Code Checkout' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 31-Oct-2014 01:55:45 Build always requires a clean checkout simple 31-Oct-2014 01:55:45 Cleaning build directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt' simple 31-Oct-2014 01:55:45 Build always requires a clean checkout simple 31-Oct-2014 01:55:45 Cleaning build directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet' simple 31-Oct-2014 01:55:46 Updating source code to revision: aa35c65cf3fe645ae852e0f4128416dc71d9ff1c simple 31-Oct-2014 01:55:46 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/.git'. simple 31-Oct-2014 01:55:46 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/.git/ simple 31-Oct-2014 01:55:47 Fetching 'refs/heads/master' from 'https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git'. Will try to do a shallow fetch. simple 31-Oct-2014 01:56:00 From https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web simple 31-Oct-2014 01:56:00 * [new branch] master -> master simple 31-Oct-2014 01:56:01 Checking out revision aa35c65cf3fe645ae852e0f4128416dc71d9ff1c. simple 31-Oct-2014 01:56:03 Already on 'master' simple 31-Oct-2014 01:56:03 Updated source code to revision: aa35c65cf3fe645ae852e0f4128416dc71d9ff1c simple 31-Oct-2014 01:56:03 Updating source code to revision: 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e simple 31-Oct-2014 01:56:03 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/.git'. simple 31-Oct-2014 01:56:03 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/.git/ simple 31-Oct-2014 01:56:04 Fetching 'refs/heads/master' from 'https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git'. Will try to do a shallow fetch. simple 31-Oct-2014 01:56:13 From https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet simple 31-Oct-2014 01:56:13 * [new branch] master -> master simple 31-Oct-2014 01:56:13 Checking out revision 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e. simple 31-Oct-2014 01:56:15 Checking out files: 35% (1035/2937) simple 31-Oct-2014 01:56:15 Checking out files: 36% (1058/2937) simple 31-Oct-2014 01:56:15 Checking out files: 37% (1087/2937) simple 31-Oct-2014 01:56:15 Checking out files: 38% (1117/2937) simple 31-Oct-2014 01:56:15 Checking out files: 39% (1146/2937) simple 31-Oct-2014 01:56:15 Checking out files: 40% (1175/2937) simple 31-Oct-2014 01:56:15 Checking out files: 41% (1205/2937) simple 31-Oct-2014 01:56:15 Checking out files: 42% (1234/2937) simple 31-Oct-2014 01:56:15 Checking out files: 43% (1263/2937) simple 31-Oct-2014 01:56:15 Checking out files: 44% (1293/2937) simple 31-Oct-2014 01:56:15 Checking out files: 45% (1322/2937) simple 31-Oct-2014 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31-Oct-2014 01:56:20 Finished task 'Source Code Checkout' with result: Success simple 31-Oct-2014 01:56:20 Running pre-build action: VCS Version Collector simple 31-Oct-2014 01:56:20 Running pre-build action: Clover Grails PreBuild Action command 31-Oct-2014 01:56:20 Substituting variable: ${bamboo.repository.branch.name} with master command 31-Oct-2014 01:56:20 Substituting variable: ${bamboo.buildNumber} with 91 simple 31-Oct-2014 01:56:20 Starting task 'Web App' of type 'com.atlassian.bamboo.plugins.ant:task.builder.ant' command 31-Oct-2014 01:56:20 Beginning to execute external process for build 'MMDB - Medici 1 GWT - default #91 (MMDB-MEDICI-JOB1-91)'\n ... running command line: \n/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 bamboo -Dbamboo.version="master#91"\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web\n ... using extra environment variables: \nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_05\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7\nJAVA_HOME=/home/bamboo/jdk1.7\nbamboo_repository_18841602_previous_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_planRepository_type=git\nbamboo_shortPlanName=Medici 1 GWT\nbamboo_planKey=MMDB-MEDICI\nbamboo_repository_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_1_branchName=master\nbamboo_repository_18841602_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_repository_34635787_previous_revision_number=d53407afafb0ac521047042d47ae0194ccd406d0\nbamboo_shortPlanKey=MEDICI\nbamboo_shortJobKey=JOB1\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_planRepository_1_branch=master\nbamboo_repository_revision_number=aa35c65cf3fe645ae852e0f4128416dc71d9ff1c\nbamboo_repository_18841602_name=cet\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.2.1\nbamboo_planRepository_2_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git\nbamboo_planName=MMDB - Medici 1 GWT\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-91\nbamboo_capability_system_jdk_JDK_1_7_0_60=/home/bamboo/jdk1.7\nbamboo_planRepository_revision=aa35c65cf3fe645ae852e0f4128416dc71d9ff1c\nbamboo_buildResultKey=MMDB-MEDICI-JOB1-91\nbamboo_repository_git_username=\nbamboo_buildKey=MMDB-MEDICI-JOB1\nbamboo_repository_previous_revision_number=d53407afafb0ac521047042d47ae0194ccd406d0\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_34635787_git_branch=master\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1\nbamboo_repository_18841602_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_repository_18841602_git_username=\nbamboo_planRepository_2_previousRevision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_buildPlanName=MMDB - Medici 1 GWT - default\nbamboo_repository_name=cet\nbamboo_planRepository_2_revision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_repository_18841602_git_branch=master\nbamboo_repository_34635787_git_username=\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-91\nbamboo_repository_34635787_revision_number=aa35c65cf3fe645ae852e0f4128416dc71d9ff1c\nbamboo_system_getTestsToPass=\nbamboo_planRepository_1_revision=aa35c65cf3fe645ae852e0f4128416dc71d9ff1c\nbamboo_repository_git_branch=master\nbamboo_planRepository_2_branch=master\nbamboo_planRepository_1_previousRevision=d53407afafb0ac521047042d47ae0194ccd406d0\nbamboo_planRepository_1_type=git\nbamboo_repository_18841602_branch_name=master\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_1_name=medici-gwt-web\nbamboo_planRepository_branch=master\nbamboo_planRepository_2_branchName=master\nbamboo_repository_34635787_name=medici-gwt-web\nbamboo_planRepository_username=\nbamboo_planRepository_branchName=master\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.7\nbamboo_capability_system_os=linux\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_repository_34635787_branch_name=master\nbamboo_shortJobName=default\nbamboo_repository_branch_name=master\nbamboo_agentId=40599557\nbamboo_planRepository_previousRevision=d53407afafb0ac521047042d47ae0194ccd406d0\nbamboo_planRepository_1_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_2_type=git\nbamboo_repository_34635787_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nANT_HOME=/home/bamboo/apache-ant-1.9.4\nbamboo_planRepository_2_name=cet\nbamboo_planRepository_1_username=\nbamboo_planRepository_2_username=\nbamboo_planRepository_name=medici-gwt-web\nbamboo_buildNumber=91\nbamboo_capability_system_hostname=snuffy\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_buildTimeStamp=2014-10-31T01:55:44.478-05:00\nPATH=/home/bamboo/jdk1.7/bin:/home/bamboo/jdk1.7/bin:/home/bamboo/node-v0.10.28/bin:/usr/bin:/bin\n build 31-Oct-2014 01:56:21 Buildfile: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml build 31-Oct-2014 01:56:22 build 31-Oct-2014 01:56:22 cetbean: build 31-Oct-2014 01:56:22 [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass build 31-Oct-2014 01:56:22 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:85: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds build 31-Oct-2014 01:56:22 [javac] Compiling 65 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass build 31-Oct-2014 01:56:23 [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5 build 31-Oct-2014 01:56:24 [javac] 1 warning build 31-Oct-2014 01:56:24 [jar] Building jar: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/lib/cet-bean.jar build 31-Oct-2014 01:56:24 [delete] Deleting directory /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass build 31-Oct-2014 01:56:24 [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass build 31-Oct-2014 01:56:24 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:100: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds build 31-Oct-2014 01:56:24 [javac] Compiling 97 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass build 31-Oct-2014 01:56:24 [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5 build 31-Oct-2014 01:56:25 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:48: warning: BASE64Encoder is internal proprietary API and may be removed in a future release build 31-Oct-2014 01:56:25 [javac] import sun.misc.BASE64Encoder; build 31-Oct-2014 01:56:25 [javac] ^ build 31-Oct-2014 01:56:25 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/DatasetBeanUtil.java:66: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:25 [javac] return Cet.DATASET; build 31-Oct-2014 01:56:25 [javac] ^ build 31-Oct-2014 01:56:25 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/TagEventBeanUtil.java:72: warning: [deprecation] encode(String) in URLEncoder has been deprecated build 31-Oct-2014 01:56:25 [javac] return Resource.uriRef("tag:cet.ncsa.uiuc.edu,2008:/tag#" + URLEncoder.encode(tag)); //$NON-NLS-1$ build 31-Oct-2014 01:56:25 [javac] ^ build 31-Oct-2014 01:56:25 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/VisualizationBeanUtil.java:73: warning: [deprecation] clone(T,PersonBean) in TupeloBeanUtil has been deprecated build 31-Oct-2014 01:56:25 [javac] public VisualizationBean clone(VisualizationBean bean, PersonBean creator) build 31-Oct-2014 01:56:25 [javac] ^ build 31-Oct-2014 01:56:25 [javac] where T is a type-variable: build 31-Oct-2014 01:56:25 [javac] T extends CETBean declared in class TupeloBeanUtil build 31-Oct-2014 01:56:25 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/VisualizationBeanUtil.java:83: warning: [deprecation] clone(ConfigurationBean,PersonBean) in ConfigurationBeanUtil has been deprecated build 31-Oct-2014 01:56:25 [javac] ConfigurationBean configuration = cbu.clone(bean.getConfiguration(), creator); build 31-Oct-2014 01:56:25 [javac] ^ build 31-Oct-2014 01:56:25 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:442: warning: [deprecation] ADMIN_ROLE in MMDB has been deprecated build 31-Oct-2014 01:56:25 [javac] if (!t.getObject().equals(MMDB.ADMIN_ROLE) && !t.getObject().equals(MMDB.REGULAR_MEMBER_ROLE)) { build 31-Oct-2014 01:56:25 [javac] ^ build 31-Oct-2014 01:56:25 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:442: warning: [deprecation] REGULAR_MEMBER_ROLE in MMDB has been deprecated build 31-Oct-2014 01:56:25 [javac] if (!t.getObject().equals(MMDB.ADMIN_ROLE) && !t.getObject().equals(MMDB.REGULAR_MEMBER_ROLE)) { build 31-Oct-2014 01:56:25 [javac] ^ build 31-Oct-2014 01:56:25 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:452: warning: [deprecation] ADMIN_ROLE in MMDB has been deprecated build 31-Oct-2014 01:56:25 [javac] createRole(MMDB.ADMIN_ROLE, "Administrator"); build 31-Oct-2014 01:56:25 [javac] ^ build 31-Oct-2014 01:56:25 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:453: warning: [deprecation] REGULAR_MEMBER_ROLE in MMDB has been deprecated build 31-Oct-2014 01:56:25 [javac] createRole(MMDB.REGULAR_MEMBER_ROLE, "Member"); build 31-Oct-2014 01:56:25 [javac] ^ build 31-Oct-2014 01:56:26 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:78: warning: BASE64Encoder is internal proprietary API and may be removed in a future release build 31-Oct-2014 01:56:26 [javac] BASE64Encoder encoder = new BASE64Encoder(); build 31-Oct-2014 01:56:26 [javac] ^ build 31-Oct-2014 01:56:26 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:78: warning: BASE64Encoder is internal proprietary API and may be removed in a future release build 31-Oct-2014 01:56:26 [javac] BASE64Encoder encoder = new BASE64Encoder(); build 31-Oct-2014 01:56:26 [javac] ^ build 31-Oct-2014 01:56:26 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/Cyberintegrator.java:57: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:26 [javac] static final public Resource DATASET = Cet.DATASET; build 31-Oct-2014 01:56:26 [javac] ^ build 31-Oct-2014 01:56:26 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:28: warning: [deprecation] Rdf in Vocabulary has been deprecated build 31-Oct-2014 01:56:26 [javac] uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.PARAMETER)); //$NON-NLS-1$ build 31-Oct-2014 01:56:26 [javac] ^ build 31-Oct-2014 01:56:26 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:40: warning: [deprecation] Rdf in Vocabulary has been deprecated build 31-Oct-2014 01:56:26 [javac] uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.PARAMETER)); //$NON-NLS-1$ build 31-Oct-2014 01:56:26 [javac] ^ build 31-Oct-2014 01:56:26 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:58: warning: [deprecation] Rdf in Vocabulary has been deprecated build 31-Oct-2014 01:56:26 [javac] uf.addPattern(new Pattern("input", Vocabulary.Rdf.TYPE, Cyberintegrator.DATASET)); //$NON-NLS-1$ build 31-Oct-2014 01:56:26 [javac] ^ build 31-Oct-2014 01:56:26 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:82: warning: [deprecation] Rdf in Vocabulary has been deprecated build 31-Oct-2014 01:56:26 [javac] uf.addPattern(new Pattern("output", Vocabulary.Rdf.TYPE, Cyberintegrator.DATASET)); //$NON-NLS-1$ build 31-Oct-2014 01:56:26 [javac] ^ build 31-Oct-2014 01:56:26 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowToolDataDAO.java:26: warning: [deprecation] Rdf in Vocabulary has been deprecated build 31-Oct-2014 01:56:26 [javac] uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.TOOL_DATA)); //$NON-NLS-1$ build 31-Oct-2014 01:56:26 [javac] ^ build 31-Oct-2014 01:56:26 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowToolDataDAO.java:41: warning: [deprecation] Rdf in Vocabulary has been deprecated build 31-Oct-2014 01:56:26 [javac] uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.TOOL_DATA)); //$NON-NLS-1$ build 31-Oct-2014 01:56:26 [javac] ^ build 31-Oct-2014 01:56:26 [javac] 19 warnings build 31-Oct-2014 01:56:26 [jar] Building jar: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/lib/cet-bean-tupelo.jar build 31-Oct-2014 01:56:26 [delete] Deleting directory /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass build 31-Oct-2014 01:56:26 build 31-Oct-2014 01:56:26 updateversion: build 31-Oct-2014 01:56:26 build 31-Oct-2014 01:56:26 clean: build 31-Oct-2014 01:56:26 build 31-Oct-2014 01:56:26 compile: build 31-Oct-2014 01:56:26 [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes build 31-Oct-2014 01:56:26 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:127: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds build 31-Oct-2014 01:56:26 [javac] Compiling 526 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes build 31-Oct-2014 01:56:26 [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5 build 31-Oct-2014 01:56:27 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/LoginPage.java:63: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 31-Oct-2014 01:56:27 [javac] import com.google.gwt.user.client.DeferredCommand; build 31-Oct-2014 01:56:27 [javac] ^ build 31-Oct-2014 01:56:27 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/SignupPage.java:53: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 31-Oct-2014 01:56:27 [javac] import com.google.gwt.user.client.DeferredCommand; build 31-Oct-2014 01:56:27 [javac] ^ build 31-Oct-2014 01:56:27 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/TagsWidget.java:56: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 31-Oct-2014 01:56:27 [javac] import com.google.gwt.user.client.DeferredCommand; build 31-Oct-2014 01:56:27 [javac] ^ build 31-Oct-2014 01:56:27 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/TextDialogView.java:46: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 31-Oct-2014 01:56:27 [javac] import com.google.gwt.user.client.DeferredCommand; build 31-Oct-2014 01:56:27 [javac] ^ build 31-Oct-2014 01:56:27 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/TagDialogViewWSuggest.java:46: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 31-Oct-2014 01:56:27 [javac] import com.google.gwt.user.client.DeferredCommand; build 31-Oct-2014 01:56:27 [javac] ^ build 31-Oct-2014 01:56:27 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/DatasetTableFourColumnView.java:63: warning: [deprecation] getShortDateTimeFormat() in DateTimeFormat has been deprecated build 31-Oct-2014 01:56:27 [javac] private final static DateTimeFormat DATE_TIME_FORMAT = DateTimeFormat.getShortDateTimeFormat(); build 31-Oct-2014 01:56:27 [javac] ^ build 31-Oct-2014 01:56:27 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/DatasetTableOneColumnView.java:83: warning: [deprecation] getShortDateTimeFormat() in DateTimeFormat has been deprecated build 31-Oct-2014 01:56:27 [javac] private final static DateTimeFormat DATE_TIME_FORMAT = DateTimeFormat.getShortDateTimeFormat(); build 31-Oct-2014 01:56:27 [javac] ^ build 31-Oct-2014 01:56:27 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/MMDB.java:444: warning: [deprecation] decodeComponent(String) in URL has been deprecated build 31-Oct-2014 01:56:27 [javac] params.put(URL.decodeComponent(terms[0]), URL.decodeComponent(terms[1])); build 31-Oct-2014 01:56:27 [javac] ^ build 31-Oct-2014 01:56:27 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/MMDB.java:444: warning: [deprecation] decodeComponent(String) in URL has been deprecated build 31-Oct-2014 01:56:27 [javac] params.put(URL.decodeComponent(terms[0]), URL.decodeComponent(terms[1])); build 31-Oct-2014 01:56:27 [javac] ^ build 31-Oct-2014 01:56:27 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/UploadWidget.java:92: warning: [deprecation] parse(String) in JSONParser has been deprecated build 31-Oct-2014 01:56:27 [javac] JSONValue value = JSONParser.parse(jsonText); build 31-Oct-2014 01:56:27 [javac] ^ build 31-Oct-2014 01:56:28 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/AnnotationView.java:104: warning: [deprecation] getMediumDateFormat() in DateTimeFormat has been deprecated build 31-Oct-2014 01:56:28 [javac] mediumDate = DateTimeFormat.getMediumDateFormat().format( build 31-Oct-2014 01:56:28 [javac] ^ build 31-Oct-2014 01:56:28 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/AnnotationView.java:107: warning: [deprecation] getShortTimeFormat() in DateTimeFormat has been deprecated build 31-Oct-2014 01:56:28 [javac] shortTime = DateTimeFormat.getShortTimeFormat().format( build 31-Oct-2014 01:56:28 [javac] ^ build 31-Oct-2014 01:56:28 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/CollectionInfoWidget.java:106: warning: [deprecation] getLongDateFormat() in DateTimeFormat has been deprecated build 31-Oct-2014 01:56:28 [javac] descriptionPanel.add(new Label(DateTimeFormat.getLongDateFormat().format(collection.getCreationDate()))); build 31-Oct-2014 01:56:28 [javac] ^ build 31-Oct-2014 01:56:28 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/CollectionPage.java:398: warning: [deprecation] getFullDateFormat() in DateTimeFormat has been deprecated build 31-Oct-2014 01:56:28 [javac] DateTimeFormat formatter = DateTimeFormat.getFullDateFormat(); build 31-Oct-2014 01:56:28 [javac] ^ build 31-Oct-2014 01:56:28 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/TitlePanel.java:68: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 31-Oct-2014 01:56:28 [javac] public TitlePanel(String title) { build 31-Oct-2014 01:56:28 [javac] ^ build 31-Oct-2014 01:56:28 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/EditableLabel.java:161: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 31-Oct-2014 01:56:28 [javac] DeferredCommand.addCommand(new Command() { build 31-Oct-2014 01:56:28 [javac] ^ build 31-Oct-2014 01:56:28 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/DatasetInfoWidget.java:107: warning: [deprecation] getLongDateFormat() in DateTimeFormat has been deprecated build 31-Oct-2014 01:56:28 [javac] descriptionPanel.add(new Label(DateTimeFormat.getLongDateFormat().format(dataset.getDate()))); build 31-Oct-2014 01:56:28 [javac] ^ build 31-Oct-2014 01:56:28 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/DatasetWidget.java:597: warning: [deprecation] toLocaleString() in Date has been deprecated build 31-Oct-2014 01:56:28 [javac] userViewTable.setText(row, 0, ua.getWhen().toLocaleString()); build 31-Oct-2014 01:56:28 [javac] ^ build 31-Oct-2014 01:56:28 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/InfoWidget.java:162: warning: [deprecation] getShortDateTimeFormat() in DateTimeFormat has been deprecated build 31-Oct-2014 01:56:28 [javac] date += DateTimeFormat.getShortDateTimeFormat().format(data.getDate()); build 31-Oct-2014 01:56:28 [javac] ^ build 31-Oct-2014 01:56:28 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/LoginPage.java:173: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 31-Oct-2014 01:56:28 [javac] DeferredCommand.addCommand(new Command() { build 31-Oct-2014 01:56:28 [javac] ^ build 31-Oct-2014 01:56:28 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/MapPage.java:165: warning: [deprecation] getShortDateFormat() in DateTimeFormat has been deprecated build 31-Oct-2014 01:56:28 [javac] mainPanel.setText(2, 1, DateTimeFormat.getShortDateFormat().format(dataset.getDate())); build 31-Oct-2014 01:56:28 [javac] ^ build 31-Oct-2014 01:56:28 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/SignupPage.java:206: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 31-Oct-2014 01:56:28 [javac] DeferredCommand.addCommand(new Command() { build 31-Oct-2014 01:56:28 [javac] ^ build 31-Oct-2014 01:56:28 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/TagsPage.java:105: warning: [deprecation] encodeComponent(String) in URL has been deprecated build 31-Oct-2014 01:56:28 [javac] Hyperlink link = new Hyperlink(linkText, "tag?title=" + URL.encodeComponent(tag)); build 31-Oct-2014 01:56:28 [javac] ^ build 31-Oct-2014 01:56:28 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/TagsWidget.java:167: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 31-Oct-2014 01:56:28 [javac] DeferredCommand.addCommand(new Command() { build 31-Oct-2014 01:56:28 [javac] ^ build 31-Oct-2014 01:56:28 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/preview/PreviewGeoCollectionBeanWidget.java:224: warning: [deprecation] getShortDateFormat() in DateTimeFormat has been deprecated build 31-Oct-2014 01:56:28 [javac] html += "Uploaded:" + DateTimeFormat.getShortDateFormat().format(dataset.getDate()) + ""; build 31-Oct-2014 01:56:28 [javac] ^ build 31-Oct-2014 01:56:28 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/preview/PreviewPyramidBeanWidget.java:56: warning: [deprecation] encodeComponent(String) in URL has been deprecated build 31-Oct-2014 01:56:28 [javac] showSeadragon(RestEndpoints.PYRAMID_URL + URL.encodeComponent(getPreviewBean().getUri()) + "/xml", getWidgetID()); //$NON-NLS-1$ build 31-Oct-2014 01:56:28 [javac] ^ build 31-Oct-2014 01:56:28 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/TextDialogView.java:100: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 31-Oct-2014 01:56:28 [javac] DeferredCommand.addCommand(new Command() { build 31-Oct-2014 01:56:28 [javac] ^ build 31-Oct-2014 01:56:28 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/DynamicGridView.java:73: warning: [deprecation] getShortDateTimeFormat() in DateTimeFormat has been deprecated build 31-Oct-2014 01:56:28 [javac] private final static DateTimeFormat DATE_TIME_FORMAT = DateTimeFormat.getShortDateTimeFormat(); build 31-Oct-2014 01:56:28 [javac] ^ build 31-Oct-2014 01:56:28 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/DynamicGridView.java:152: warning: [deprecation] getShortDateFormat() in DateTimeFormat has been deprecated build 31-Oct-2014 01:56:28 [javac] Label dateuploaded = new Label(DateTimeFormat.getShortDateFormat().format(date)); build 31-Oct-2014 01:56:28 [javac] ^ build 31-Oct-2014 01:56:28 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/DynamicListView.java:67: warning: [deprecation] getShortDateTimeFormat() in DateTimeFormat has been deprecated build 31-Oct-2014 01:56:28 [javac] private final static DateTimeFormat DATE_TIME_FORMAT = DateTimeFormat.getShortDateTimeFormat(); build 31-Oct-2014 01:56:28 [javac] ^ build 31-Oct-2014 01:56:28 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/DynamicListView.java:136: warning: [deprecation] getMediumDateTimeFormat() in DateTimeFormat has been deprecated build 31-Oct-2014 01:56:28 [javac] informationPanel.setWidget(2, 0, new Label(DateTimeFormat.getMediumDateTimeFormat().format(date))); build 31-Oct-2014 01:56:28 [javac] ^ build 31-Oct-2014 01:56:28 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/TagDialogViewWSuggest.java:106: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 31-Oct-2014 01:56:28 [javac] DeferredCommand.addCommand(new Command() { build 31-Oct-2014 01:56:28 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/rest/RestServlet.java:599: warning: [deprecation] Date(String) in Date has been deprecated build 31-Oct-2014 01:56:29 [javac] Date d = new Date(request.getHeader("If-Modified-Since")); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/rest/RssServlet.java:97: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] u.addPattern("s", Rdf.TYPE, Cet.DATASET); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/AccessControl.java:92: warning: [deprecation] VIEW_ADMIN_PAGES in MMDB has been deprecated build 31-Oct-2014 01:56:29 [javac] return rbac.checkPermission(Resource.uriRef(personUri), MMDB.VIEW_ADMIN_PAGES); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/ContextSetupListener.java:614: warning: [deprecation] addUser(String,String,String,String) in ContextAuthentication has been deprecated build 31-Oct-2014 01:56:29 [javac] userid = auth.addUser(username, email, fullname, password); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/DatasourceBeanPreprocessor.java:125: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] uf.addPattern("s", Rdf.TYPE, Cet.DATASET); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/PermissionResourceMap.java:63: warning: [deprecation] VIEW_ADMIN_PAGES in MMDB has been deprecated build 31-Oct-2014 01:56:29 [javac] map.put(Permission.VIEW_ADMIN_PAGES, MMDB.VIEW_ADMIN_PAGES); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/PermissionResourceMap.java:64: warning: [deprecation] VIEW_MEMBER_PAGES in MMDB has been deprecated build 31-Oct-2014 01:56:29 [javac] map.put(Permission.VIEW_MEMBER_PAGES, MMDB.VIEW_MEMBER_PAGES); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/RoleResourceMap.java:64: warning: [deprecation] ADMIN_ROLE in MMDB has been deprecated build 31-Oct-2014 01:56:29 [javac] toResource.put(Role.ADMIN, MMDB.ADMIN_ROLE); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/RoleResourceMap.java:65: warning: [deprecation] REGULAR_MEMBER_ROLE in MMDB has been deprecated build 31-Oct-2014 01:56:29 [javac] toResource.put(Role.MEMBER, MMDB.REGULAR_MEMBER_ROLE); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/RoleResourceMap.java:68: warning: [deprecation] ADMIN_ROLE in MMDB has been deprecated build 31-Oct-2014 01:56:29 [javac] toRole.put(MMDB.ADMIN_ROLE, Role.ADMIN); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/RoleResourceMap.java:69: warning: [deprecation] REGULAR_MEMBER_ROLE in MMDB has been deprecated build 31-Oct-2014 01:56:29 [javac] toRole.put(MMDB.REGULAR_MEMBER_ROLE, Role.MEMBER); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/TupeloStore.java:540: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] } else if (Cet.DATASET.equals(type)) { build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/TupeloStore.java:637: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] u.addPattern("descriptor", Rdf.TYPE, Cet.DATASET); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/TupeloStore.java:661: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] u.addPattern("member", Rdf.TYPE, Cet.DATASET); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/TupeloStore.java:945: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] u.addPattern("d", Rdf.TYPE, Cet.DATASET); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/UploadBlob.java:408: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] t.addType(Cet.DATASET); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/AnnotateResourceHandler.java:84: warning: [deprecation] getId() in AnnotateResource has been deprecated build 31-Oct-2014 01:56:29 [javac] String resource = arg0.getId(); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GeoSearchHandler.java:89: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] u.addPattern("d", Rdf.TYPE, Cet.DATASET); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GetCollectionHandler.java:289: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] u.addPattern("s", Rdf.TYPE, Cet.DATASET); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GetCollectionHandler.java:329: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] if (Cet.DATASET.equals(row.get(1)) && !row.get(5).getString().equals(user)) { build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GetDatasetsByTagHandler.java:95: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] uf.addPattern("dataset", Rdf.TYPE, Cet.DATASET); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GetDerivedFromHandler.java:92: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] u.addPattern("input", Rdf.TYPE, Cet.DATASET); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GetRecentActivityHandler.java:98: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] uf.addPattern("dataset", Rdf.TYPE, Cet.DATASET); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GetUsersHandler.java:110: warning: [deprecation] toLocaleString() in Date has been deprecated build 31-Oct-2014 01:56:29 [javac] user.lastlogin = cal.getTime().toLocaleString(); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/ListQueryHandler.java:147: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] if (!row.get(1).equals(Cet.DATASET) && !row.get(1).equals(CollectionBeanUtil.COLLECTION_TYPE)) { build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/SystemInfoHandler.java:140: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] if (Cet.DATASET.equals(row.get(1))) { build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ItemServicesImpl.java:938: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] if (itemType.equals(Cet.DATASET)) { build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/CollectionsRestService.java:167: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] return addItemToCollection(id, item_id, Cet.DATASET, request); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:310: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] return getTopLevelItems(Cet.DATASET, datasetBasics, userId); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:365: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] ValidItem item = new ValidItem(itemId, Cet.DATASET, userId); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:447: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] return markItemAsDeleted(id, Cet.DATASET, request); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:462: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] return getItemTagsByIdAsJSON(id, Cet.DATASET, request); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:477: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] return addTagsToItem(id, tags, Cet.DATASET, request); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:492: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] return deleteTagsFromItem(id, tags, Cet.DATASET, request); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:561: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] return getItemsByMetadata(pred, type, value, Cet.DATASET, request); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:615: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] return getItemsThatAreGeoLayers(Cet.DATASET, null, request); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:631: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] return getItemsThatAreGeoFeatures(Cet.DATASET, null, request); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/TagsRestService.java:105: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] return getMetadataByReverseRelationship((UriRef) TagEventBeanUtil.createTagUri(tag), Tags.TAGGED_WITH_TAG, datasetBasics, userId, Cet.DATASET); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/TagsRestService.java:144: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] return getItemsThatAreGeoLayers(Cet.DATASET, (UriRef) TagEventBeanUtil.createTagUri(tagString), request); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/TagsRestService.java:160: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] return getItemsThatAreGeoFeatures(Cet.DATASET, (UriRef) TagEventBeanUtil.createTagUri(tagString), request); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/util/BeanFiller.java:116: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] t.addType(Cet.DATASET); build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/webdav/CollectionBeanResource.java:114: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] uf.addPattern("data", Rdf.TYPE, Cet.DATASET); //$NON-NLS-1$ build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/webdav/PersonBeanResource.java:99: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] uf.addPattern("data", Rdf.TYPE, Cet.DATASET); //$NON-NLS-1$ build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/webdav/TagBeanResource.java:99: warning: [deprecation] DATASET in Cet has been deprecated build 31-Oct-2014 01:56:29 [javac] uf.addPattern("data", Rdf.TYPE, Cet.DATASET); //$NON-NLS-1$ build 31-Oct-2014 01:56:29 [javac] ^ build 31-Oct-2014 01:56:29 [javac] Note: Some input files use unchecked or unsafe operations. build 31-Oct-2014 01:56:29 [javac] Note: Recompile with -Xlint:unchecked for details. build 31-Oct-2014 01:56:29 [javac] 77 warnings build 31-Oct-2014 01:56:29 build 31-Oct-2014 01:56:29 gwtc: build 31-Oct-2014 01:56:30 [java] Compiling module edu.illinois.ncsa.mmdb.web.MMDB build 31-Oct-2014 01:57:03 [java] Compiling 6 permutations build 31-Oct-2014 01:57:03 [java] Compiling permutation 0... build 31-Oct-2014 01:57:13 [java] Compiling permutation 1... build 31-Oct-2014 01:57:21 [java] Compiling permutation 2... build 31-Oct-2014 01:57:29 [java] Compiling permutation 3... build 31-Oct-2014 01:57:37 [java] Compiling permutation 4... build 31-Oct-2014 01:57:45 [java] Compiling permutation 5... build 31-Oct-2014 01:57:52 [java] Compile of permutations succeeded build 31-Oct-2014 01:57:53 [java] Linking into /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/mmdb build 31-Oct-2014 01:57:53 [java] Link succeeded build 31-Oct-2014 01:57:53 [java] Compilation succeeded -- 82.455s build 31-Oct-2014 01:57:53 [java] Compiling module edu.illinois.ncsa.mmdb.web.Embed build 31-Oct-2014 01:58:14 [java] Compiling 6 permutations build 31-Oct-2014 01:58:14 [java] Compiling permutation 0... build 31-Oct-2014 01:58:19 [java] Compiling permutation 1... build 31-Oct-2014 01:58:23 [java] Compiling permutation 2... build 31-Oct-2014 01:58:26 [java] Compiling permutation 3... build 31-Oct-2014 01:58:30 [java] Compiling permutation 4... build 31-Oct-2014 01:58:33 [java] Compiling permutation 5... build 31-Oct-2014 01:58:36 [java] Compile of permutations succeeded build 31-Oct-2014 01:58:37 [java] Linking into /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/embed build 31-Oct-2014 01:58:37 [java] Link succeeded build 31-Oct-2014 01:58:37 [java] Compilation succeeded -- 43.353s build 31-Oct-2014 01:58:37 build 31-Oct-2014 01:58:37 resources: build 31-Oct-2014 01:58:37 [copy] Copying 7 files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes build 31-Oct-2014 01:58:37 [copy] Copying 1 file to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes build 31-Oct-2014 01:58:37 build 31-Oct-2014 01:58:37 war: build 31-Oct-2014 01:58:37 [zip] Building zip: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/medici.war build 31-Oct-2014 01:58:40 build 31-Oct-2014 01:58:40 bamboo: build 31-Oct-2014 01:58:40 build 31-Oct-2014 01:58:40 BUILD SUCCESSFUL build 31-Oct-2014 01:58:40 Total time: 2 minutes 19 seconds simple 31-Oct-2014 01:58:40 Finished task 'Web App' with result: Success simple 31-Oct-2014 01:58:40 Starting task 'Geo Browse' of type 'com.atlassian.bamboo.plugins.ant:task.builder.ant' command 31-Oct-2014 01:58:41 Beginning to execute external process for build 'MMDB - Medici 1 GWT - default #91 (MMDB-MEDICI-JOB1-91)'\n ... running command line: \n/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 clean war\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse\n ... using extra environment variables: \nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_05\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7\nJAVA_HOME=/home/bamboo/jdk1.7\nbamboo_repository_18841602_previous_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_planRepository_type=git\nbamboo_shortPlanName=Medici 1 GWT\nbamboo_planKey=MMDB-MEDICI\nbamboo_repository_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_1_branchName=master\nbamboo_repository_18841602_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_repository_34635787_previous_revision_number=d53407afafb0ac521047042d47ae0194ccd406d0\nbamboo_shortPlanKey=MEDICI\nbamboo_shortJobKey=JOB1\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_planRepository_1_branch=master\nbamboo_repository_revision_number=aa35c65cf3fe645ae852e0f4128416dc71d9ff1c\nbamboo_repository_18841602_name=cet\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.2.1\nbamboo_planRepository_2_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git\nbamboo_planName=MMDB - Medici 1 GWT\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-91\nbamboo_capability_system_jdk_JDK_1_7_0_60=/home/bamboo/jdk1.7\nbamboo_planRepository_revision=aa35c65cf3fe645ae852e0f4128416dc71d9ff1c\nbamboo_buildResultKey=MMDB-MEDICI-JOB1-91\nbamboo_repository_git_username=\nbamboo_buildKey=MMDB-MEDICI-JOB1\nbamboo_repository_previous_revision_number=d53407afafb0ac521047042d47ae0194ccd406d0\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_34635787_git_branch=master\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1\nbamboo_repository_18841602_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_repository_18841602_git_username=\nbamboo_planRepository_2_previousRevision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_buildPlanName=MMDB - Medici 1 GWT - default\nbamboo_repository_name=cet\nbamboo_planRepository_2_revision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_repository_18841602_git_branch=master\nbamboo_repository_34635787_git_username=\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-91\nbamboo_repository_34635787_revision_number=aa35c65cf3fe645ae852e0f4128416dc71d9ff1c\nbamboo_system_getTestsToPass=\nbamboo_planRepository_1_revision=aa35c65cf3fe645ae852e0f4128416dc71d9ff1c\nbamboo_repository_git_branch=master\nbamboo_planRepository_2_branch=master\nbamboo_planRepository_1_previousRevision=d53407afafb0ac521047042d47ae0194ccd406d0\nbamboo_planRepository_1_type=git\nbamboo_repository_18841602_branch_name=master\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_1_name=medici-gwt-web\nbamboo_build_commandline_com_atlassian_bamboo_plugins_ant_task_builder_ant_2=/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 bamboo -Dbamboo.version="master#91"\nbamboo_planRepository_branch=master\nbamboo_planRepository_2_branchName=master\nbamboo_repository_34635787_name=medici-gwt-web\nbamboo_planRepository_username=\nbamboo_planRepository_branchName=master\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.7\nbamboo_capability_system_os=linux\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_repository_34635787_branch_name=master\nbamboo_shortJobName=default\nbamboo_repository_branch_name=master\nbamboo_agentId=40599557\nbamboo_planRepository_previousRevision=d53407afafb0ac521047042d47ae0194ccd406d0\nbamboo_planRepository_1_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_2_type=git\nbamboo_repository_34635787_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nANT_HOME=/home/bamboo/apache-ant-1.9.4\nbamboo_planRepository_2_name=cet\nbamboo_planRepository_1_username=\nbamboo_planRepository_2_username=\nbamboo_planRepository_name=medici-gwt-web\nbamboo_buildNumber=91\nbamboo_capability_system_hostname=snuffy\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_buildTimeStamp=2014-10-31T01:55:44.478-05:00\nPATH=/home/bamboo/jdk1.7/bin:/home/bamboo/jdk1.7/bin:/home/bamboo/node-v0.10.28/bin:/usr/bin:/bin\n build 31-Oct-2014 01:58:41 Buildfile: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse/build.xml build 31-Oct-2014 01:58:41 build 31-Oct-2014 01:58:41 clean: build 31-Oct-2014 01:58:41 build 31-Oct-2014 01:58:41 clean: build 31-Oct-2014 01:58:41 build 31-Oct-2014 01:58:41 resources: build 31-Oct-2014 01:58:41 [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse/war/WEB-INF/classes build 31-Oct-2014 01:58:41 [copy] Copying 3 files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse/war/WEB-INF/classes build 31-Oct-2014 01:58:41 build 31-Oct-2014 01:58:41 compile: build 31-Oct-2014 01:58:41 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse/build.xml:68: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds build 31-Oct-2014 01:58:41 [javac] Compiling 24 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse/war/WEB-INF/classes build 31-Oct-2014 01:58:41 [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.6 build 31-Oct-2014 01:58:43 [javac] 1 warning build 31-Oct-2014 01:58:43 build 31-Oct-2014 01:58:43 gwtc: build 31-Oct-2014 01:58:44 [java] Compiling module edu.illinois.ncsa.medici.geowebapp.Geo_webapp build 31-Oct-2014 01:58:58 [java] Compiling 6 permutations build 31-Oct-2014 01:58:58 [java] Compiling permutation 0... build 31-Oct-2014 01:59:02 [java] Compiling permutation 1... build 31-Oct-2014 01:59:05 [java] Compiling permutation 2... build 31-Oct-2014 01:59:07 [java] Compiling permutation 3... build 31-Oct-2014 01:59:09 [java] Compiling permutation 4... build 31-Oct-2014 01:59:11 [java] Compiling permutation 5... build 31-Oct-2014 01:59:13 [java] Compile of permutations succeeded build 31-Oct-2014 01:59:13 [java] Linking into /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse/war/geobrowse build 31-Oct-2014 01:59:13 [java] Link succeeded build 31-Oct-2014 01:59:13 [java] Compilation succeeded -- 29.934s build 31-Oct-2014 01:59:13 build 31-Oct-2014 01:59:13 war: build 31-Oct-2014 01:59:14 [zip] Building zip: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse/geobrowse.war build 31-Oct-2014 01:59:14 build 31-Oct-2014 01:59:14 BUILD SUCCESSFUL build 31-Oct-2014 01:59:14 Total time: 33 seconds simple 31-Oct-2014 01:59:15 Finished task 'Geo Browse' with result: Success simple 31-Oct-2014 01:59:15 Starting task 'Dashboard' of type 'com.atlassian.bamboo.plugins.ant:task.builder.ant' command 31-Oct-2014 01:59:15 Beginning to execute external process for build 'MMDB - Medici 1 GWT - default #91 (MMDB-MEDICI-JOB1-91)'\n ... running command line: \n/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 clean war\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/dashboard\n ... using extra environment variables: \nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_05\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7\nJAVA_HOME=/home/bamboo/jdk1.7\nbamboo_repository_18841602_previous_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_planRepository_type=git\nbamboo_shortPlanName=Medici 1 GWT\nbamboo_planKey=MMDB-MEDICI\nbamboo_repository_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_1_branchName=master\nbamboo_repository_18841602_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_repository_34635787_previous_revision_number=d53407afafb0ac521047042d47ae0194ccd406d0\nbamboo_shortPlanKey=MEDICI\nbamboo_shortJobKey=JOB1\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_planRepository_1_branch=master\nbamboo_repository_revision_number=aa35c65cf3fe645ae852e0f4128416dc71d9ff1c\nbamboo_repository_18841602_name=cet\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.2.1\nbamboo_planRepository_2_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git\nbamboo_planName=MMDB - Medici 1 GWT\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-91\nbamboo_capability_system_jdk_JDK_1_7_0_60=/home/bamboo/jdk1.7\nbamboo_planRepository_revision=aa35c65cf3fe645ae852e0f4128416dc71d9ff1c\nbamboo_buildResultKey=MMDB-MEDICI-JOB1-91\nbamboo_repository_git_username=\nbamboo_buildKey=MMDB-MEDICI-JOB1\nbamboo_repository_previous_revision_number=d53407afafb0ac521047042d47ae0194ccd406d0\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_34635787_git_branch=master\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1\nbamboo_repository_18841602_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_repository_18841602_git_username=\nbamboo_planRepository_2_previousRevision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_buildPlanName=MMDB - Medici 1 GWT - default\nbamboo_repository_name=cet\nbamboo_planRepository_2_revision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_repository_18841602_git_branch=master\nbamboo_repository_34635787_git_username=\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-91\nbamboo_repository_34635787_revision_number=aa35c65cf3fe645ae852e0f4128416dc71d9ff1c\nbamboo_system_getTestsToPass=\nbamboo_planRepository_1_revision=aa35c65cf3fe645ae852e0f4128416dc71d9ff1c\nbamboo_repository_git_branch=master\nbamboo_planRepository_2_branch=master\nbamboo_planRepository_1_previousRevision=d53407afafb0ac521047042d47ae0194ccd406d0\nbamboo_planRepository_1_type=git\nbamboo_repository_18841602_branch_name=master\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_1_name=medici-gwt-web\nbamboo_build_commandline_com_atlassian_bamboo_plugins_ant_task_builder_ant_2=/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 bamboo -Dbamboo.version="master#91"\nbamboo_planRepository_branch=master\nbamboo_planRepository_2_branchName=master\nbamboo_repository_34635787_name=medici-gwt-web\nbamboo_planRepository_username=\nbamboo_planRepository_branchName=master\nbamboo_build_commandline_com_atlassian_bamboo_plugins_ant_task_builder_ant_4=/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 clean war\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.7\nbamboo_capability_system_os=linux\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_repository_34635787_branch_name=master\nbamboo_shortJobName=default\nbamboo_repository_branch_name=master\nbamboo_agentId=40599557\nbamboo_planRepository_previousRevision=d53407afafb0ac521047042d47ae0194ccd406d0\nbamboo_planRepository_1_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_2_type=git\nbamboo_repository_34635787_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nANT_HOME=/home/bamboo/apache-ant-1.9.4\nbamboo_planRepository_2_name=cet\nbamboo_planRepository_1_username=\nbamboo_planRepository_2_username=\nbamboo_planRepository_name=medici-gwt-web\nbamboo_buildNumber=91\nbamboo_capability_system_hostname=snuffy\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_buildTimeStamp=2014-10-31T01:55:44.478-05:00\nPATH=/home/bamboo/jdk1.7/bin:/home/bamboo/jdk1.7/bin:/home/bamboo/node-v0.10.28/bin:/usr/bin:/bin\n build 31-Oct-2014 01:59:15 Buildfile: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/dashboard/build.xml build 31-Oct-2014 01:59:15 build 31-Oct-2014 01:59:15 clean: build 31-Oct-2014 01:59:15 build 31-Oct-2014 01:59:15 clean: build 31-Oct-2014 01:59:15 build 31-Oct-2014 01:59:15 resources: build 31-Oct-2014 01:59:15 [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/dashboard/WebContent/WEB-INF/classes build 31-Oct-2014 01:59:15 [copy] Copying 3 files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/dashboard/WebContent/WEB-INF/classes build 31-Oct-2014 01:59:15 build 31-Oct-2014 01:59:15 compile: build 31-Oct-2014 01:59:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/dashboard/build.xml:77: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds build 31-Oct-2014 01:59:15 [javac] Compiling 3 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/dashboard/WebContent/WEB-INF/classes build 31-Oct-2014 01:59:15 [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5 build 31-Oct-2014 01:59:16 [javac] 1 warning build 31-Oct-2014 01:59:16 build 31-Oct-2014 01:59:16 war: build 31-Oct-2014 01:59:16 [zip] Building zip: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/dashboard/dashboard.war build 31-Oct-2014 01:59:16 build 31-Oct-2014 01:59:16 BUILD SUCCESSFUL build 31-Oct-2014 01:59:16 Total time: 1 second simple 31-Oct-2014 01:59:16 Finished task 'Dashboard' with result: Success simple 31-Oct-2014 01:59:16 Starting task 'Discovery' of type 'com.atlassian.bamboo.plugins.ant:task.builder.ant' command 31-Oct-2014 01:59:16 Beginning to execute external process for build 'MMDB - Medici 1 GWT - default #91 (MMDB-MEDICI-JOB1-91)'\n ... running command line: \n/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 clean war\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery\n ... using extra environment variables: \nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_05\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7\nJAVA_HOME=/home/bamboo/jdk1.7\nbamboo_repository_18841602_previous_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_planRepository_type=git\nbamboo_shortPlanName=Medici 1 GWT\nbamboo_planKey=MMDB-MEDICI\nbamboo_repository_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_1_branchName=master\nbamboo_repository_18841602_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_repository_34635787_previous_revision_number=d53407afafb0ac521047042d47ae0194ccd406d0\nbamboo_shortPlanKey=MEDICI\nbamboo_shortJobKey=JOB1\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_planRepository_1_branch=master\nbamboo_repository_revision_number=aa35c65cf3fe645ae852e0f4128416dc71d9ff1c\nbamboo_repository_18841602_name=cet\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.2.1\nbamboo_planRepository_2_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git\nbamboo_planName=MMDB - Medici 1 GWT\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-91\nbamboo_capability_system_jdk_JDK_1_7_0_60=/home/bamboo/jdk1.7\nbamboo_planRepository_revision=aa35c65cf3fe645ae852e0f4128416dc71d9ff1c\nbamboo_buildResultKey=MMDB-MEDICI-JOB1-91\nbamboo_repository_git_username=\nbamboo_buildKey=MMDB-MEDICI-JOB1\nbamboo_repository_previous_revision_number=d53407afafb0ac521047042d47ae0194ccd406d0\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_34635787_git_branch=master\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1\nbamboo_repository_18841602_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_repository_18841602_git_username=\nbamboo_planRepository_2_previousRevision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_buildPlanName=MMDB - Medici 1 GWT - default\nbamboo_repository_name=cet\nbamboo_planRepository_2_revision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_repository_18841602_git_branch=master\nbamboo_repository_34635787_git_username=\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-91\nbamboo_repository_34635787_revision_number=aa35c65cf3fe645ae852e0f4128416dc71d9ff1c\nbamboo_system_getTestsToPass=\nbamboo_planRepository_1_revision=aa35c65cf3fe645ae852e0f4128416dc71d9ff1c\nbamboo_repository_git_branch=master\nbamboo_planRepository_2_branch=master\nbamboo_planRepository_1_previousRevision=d53407afafb0ac521047042d47ae0194ccd406d0\nbamboo_planRepository_1_type=git\nbamboo_repository_18841602_branch_name=master\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_1_name=medici-gwt-web\nbamboo_build_commandline_com_atlassian_bamboo_plugins_ant_task_builder_ant_2=/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 bamboo -Dbamboo.version="master#91"\nbamboo_planRepository_branch=master\nbamboo_planRepository_2_branchName=master\nbamboo_repository_34635787_name=medici-gwt-web\nbamboo_planRepository_username=\nbamboo_build_commandline_com_atlassian_bamboo_plugins_ant_task_builder_ant_5=/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 clean war\nbamboo_planRepository_branchName=master\nbamboo_build_commandline_com_atlassian_bamboo_plugins_ant_task_builder_ant_4=/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 clean war\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.7\nbamboo_capability_system_os=linux\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_repository_34635787_branch_name=master\nbamboo_shortJobName=default\nbamboo_repository_branch_name=master\nbamboo_agentId=40599557\nbamboo_planRepository_previousRevision=d53407afafb0ac521047042d47ae0194ccd406d0\nbamboo_planRepository_1_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_2_type=git\nbamboo_repository_34635787_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nANT_HOME=/home/bamboo/apache-ant-1.9.4\nbamboo_planRepository_2_name=cet\nbamboo_planRepository_1_username=\nbamboo_planRepository_2_username=\nbamboo_planRepository_name=medici-gwt-web\nbamboo_buildNumber=91\nbamboo_capability_system_hostname=snuffy\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_buildTimeStamp=2014-10-31T01:55:44.478-05:00\nPATH=/home/bamboo/jdk1.7/bin:/home/bamboo/jdk1.7/bin:/home/bamboo/node-v0.10.28/bin:/usr/bin:/bin\n build 31-Oct-2014 01:59:16 Buildfile: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery/build.xml build 31-Oct-2014 01:59:17 build 31-Oct-2014 01:59:17 clean: build 31-Oct-2014 01:59:17 build 31-Oct-2014 01:59:17 clean: build 31-Oct-2014 01:59:17 build 31-Oct-2014 01:59:17 resources: build 31-Oct-2014 01:59:17 [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery/WebContent/WEB-INF/classes build 31-Oct-2014 01:59:17 [copy] Copying 3 files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery/WebContent/WEB-INF/classes build 31-Oct-2014 01:59:17 build 31-Oct-2014 01:59:17 compile: build 31-Oct-2014 01:59:17 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery/build.xml:65: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds build 31-Oct-2014 01:59:17 [javac] Compiling 8 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery/WebContent/WEB-INF/classes build 31-Oct-2014 01:59:17 [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5 build 31-Oct-2014 01:59:17 [javac] 1 warning build 31-Oct-2014 01:59:18 [javac] Creating empty /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery/WebContent/WEB-INF/classes/org/sead/acr/discovery/package-info.class build 31-Oct-2014 01:59:18 build 31-Oct-2014 01:59:18 war: build 31-Oct-2014 01:59:18 [zip] Building zip: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery/discovery.war build 31-Oct-2014 01:59:18 build 31-Oct-2014 01:59:18 BUILD SUCCESSFUL build 31-Oct-2014 01:59:18 Total time: 1 second simple 31-Oct-2014 01:59:18 Finished task 'Discovery' with result: Success simple 31-Oct-2014 01:59:18 Running post build plugin 'Artifact Copier' simple 31-Oct-2014 01:59:18 Publishing an artifact: medici.war simple 31-Oct-2014 01:59:18 Finished publishing of artifact Job artifact: [medici.war], pattern: [medici.war] anchored at: [mmdb-gwt/edu.illinois.ncsa.mmdb.web] in 0s simple 31-Oct-2014 01:59:18 Publishing an artifact: geobrowse.war simple 31-Oct-2014 01:59:18 Finished publishing of artifact Job artifact: [geobrowse.war], pattern: [geobrowse.war] anchored at: [mmdb-gwt/geobrowse] in 0s simple 31-Oct-2014 01:59:18 Publishing an artifact: dashboard.war simple 31-Oct-2014 01:59:18 Finished publishing of artifact Job artifact: [dashboard.war], pattern: [dashboard.war] anchored at: [mmdb-gwt/dashboard] in 0s simple 31-Oct-2014 01:59:18 Publishing an artifact: discovery.war simple 31-Oct-2014 01:59:18 Finished publishing of artifact Job artifact: [discovery.war], pattern: [discovery.war] anchored at: [mmdb-gwt/discovery] in 0s simple 31-Oct-2014 01:59:18 Running post build plugin 'NCover Results Collector' simple 31-Oct-2014 01:59:18 Running post build plugin 'Clover Results Collector' simple 31-Oct-2014 01:59:18 Finalising the build... simple 31-Oct-2014 01:59:18 Stopping timer. simple 31-Oct-2014 01:59:18 Build MMDB-MEDICI-JOB1-91 completed. simple 31-Oct-2014 01:59:18 Running on server: post build plugin 'NCover Results Collector' simple 31-Oct-2014 01:59:18 Running on server: post build plugin 'Clover Delta Calculator' simple 31-Oct-2014 01:59:18 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 31-Oct-2014 01:59:18 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 31-Oct-2014 01:59:18 All post build plugins have finished simple 31-Oct-2014 01:59:18 Generating build results summary... simple 31-Oct-2014 01:59:18 Saving build results to disk... simple 31-Oct-2014 01:59:18 Indexing build results... simple 31-Oct-2014 01:59:18 Finished building MMDB-MEDICI-JOB1-91.