simple 19-Dec-2014 19:42:22 Build MMDB - Medici 1 GWT - default #94 (MMDB-MEDICI-JOB1-94) started building on agent buildserver-2.ncsa.illinois.edu simple 19-Dec-2014 19:42:22 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1 simple 19-Dec-2014 19:42:22 Executing build MMDB - Medici 1 GWT - default #94 (MMDB-MEDICI-JOB1-94) simple 19-Dec-2014 19:42:22 Starting task 'Source Code Checkout' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 19-Dec-2014 19:42:22 Build always requires a clean checkout simple 19-Dec-2014 19:42:22 Cleaning build directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt' simple 19-Dec-2014 19:42:22 Build always requires a clean checkout simple 19-Dec-2014 19:42:22 Cleaning build directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet' simple 19-Dec-2014 19:42:22 Updating source code to revision: be4a91e17aec92deb8437557b40e29ab99a26c72 simple 19-Dec-2014 19:42:22 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/.git'. simple 19-Dec-2014 19:42:22 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/.git/ simple 19-Dec-2014 19:42:22 Fetching 'refs/heads/master' from 'https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git'. Will try to do a shallow fetch. simple 19-Dec-2014 19:42:39 From https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web simple 19-Dec-2014 19:42:39 * [new branch] master -> master simple 19-Dec-2014 19:42:39 Checking out revision be4a91e17aec92deb8437557b40e29ab99a26c72. simple 19-Dec-2014 19:42:43 Already on 'master' simple 19-Dec-2014 19:42:43 Updated source code to revision: be4a91e17aec92deb8437557b40e29ab99a26c72 simple 19-Dec-2014 19:42:43 Updating source code to revision: 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e simple 19-Dec-2014 19:42:43 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/.git'. simple 19-Dec-2014 19:42:43 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/.git/ simple 19-Dec-2014 19:42:44 Fetching 'refs/heads/master' from 'https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git'. Will try to do a shallow fetch. simple 19-Dec-2014 19:42:56 From https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet simple 19-Dec-2014 19:42:56 * [new branch] master -> master simple 19-Dec-2014 19:42:56 Checking out revision 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e. simple 19-Dec-2014 19:42:57 Checking out files: 31% (925/2937) simple 19-Dec-2014 19:42:57 Checking out files: 32% (940/2937) simple 19-Dec-2014 19:42:57 Checking out files: 33% (970/2937) simple 19-Dec-2014 19:42:57 Checking out files: 34% (999/2937) simple 19-Dec-2014 19:42:57 Checking out files: 35% (1028/2937) simple 19-Dec-2014 19:42:58 Checking out files: 36% (1058/2937) simple 19-Dec-2014 19:42:58 Checking out files: 37% (1087/2937) simple 19-Dec-2014 19:42:58 Checking out files: 38% (1117/2937) simple 19-Dec-2014 19:42:58 Checking out files: 39% (1146/2937) simple 19-Dec-2014 19:42:58 Checking out files: 40% (1175/2937) simple 19-Dec-2014 19:42:58 Checking out files: 41% (1205/2937) simple 19-Dec-2014 19:42:58 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99% (2908/2937) simple 19-Dec-2014 19:43:04 Checking out files: 100% (2937/2937) simple 19-Dec-2014 19:43:04 Checking out files: 100% (2937/2937), done. simple 19-Dec-2014 19:43:04 Already on 'master' simple 19-Dec-2014 19:43:05 Updated source code to revision: 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e simple 19-Dec-2014 19:43:05 Finished task 'Source Code Checkout' with result: Success simple 19-Dec-2014 19:43:05 Running pre-build action: VCS Version Collector simple 19-Dec-2014 19:43:05 Running pre-build action: Clover Grails PreBuild Action command 19-Dec-2014 19:43:05 Substituting variable: ${bamboo.repository.branch.name} with master command 19-Dec-2014 19:43:05 Substituting variable: ${bamboo.buildNumber} with 94 simple 19-Dec-2014 19:43:05 Starting task 'Web App' of type 'com.atlassian.bamboo.plugins.ant:task.builder.ant' command 19-Dec-2014 19:43:05 Beginning to execute external process for build 'MMDB - Medici 1 GWT - default #94 (MMDB-MEDICI-JOB1-94)'\n ... running command line: \n/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 bamboo -Dbamboo.version="master#94"\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web\n ... using extra environment variables: \nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_05\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nJAVA_HOME=/home/bamboo/jdk1.7.0_60\nbamboo_repository_18841602_previous_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_planRepository_type=git\nbamboo_shortPlanName=Medici 1 GWT\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_planKey=MMDB-MEDICI\nbamboo_repository_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_1_branchName=master\nbamboo_repository_18841602_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_repository_34635787_previous_revision_number=2812f29b30ce2a1b5bdf5288b994732fc8f587b3\nbamboo_shortPlanKey=MEDICI\nbamboo_shortJobKey=JOB1\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_planRepository_1_branch=master\nbamboo_repository_revision_number=be4a91e17aec92deb8437557b40e29ab99a26c72\nbamboo_repository_18841602_name=cet\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.2.1\nbamboo_planRepository_2_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planName=MMDB - Medici 1 GWT\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-94\nbamboo_capability_system_jdk_JDK_1_7_0_60=/home/bamboo/jdk1.7.0_60\nbamboo_buildResultKey=MMDB-MEDICI-JOB1-94\nbamboo_planRepository_revision=be4a91e17aec92deb8437557b40e29ab99a26c72\nbamboo_repository_git_username=\nbamboo_buildKey=MMDB-MEDICI-JOB1\nbamboo_repository_previous_revision_number=2812f29b30ce2a1b5bdf5288b994732fc8f587b3\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_34635787_git_branch=master\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1\nbamboo_repository_18841602_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_repository_18841602_git_username=\nbamboo_planRepository_2_previousRevision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_buildPlanName=MMDB - Medici 1 GWT - default\nbamboo_repository_name=cet\nbamboo_planRepository_2_revision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_repository_18841602_git_branch=master\nbamboo_repository_34635787_git_username=\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-94\nbamboo_repository_34635787_revision_number=be4a91e17aec92deb8437557b40e29ab99a26c72\nbamboo_system_getTestsToPass=\nbamboo_planRepository_1_revision=be4a91e17aec92deb8437557b40e29ab99a26c72\nbamboo_repository_git_branch=master\nbamboo_planRepository_2_branch=master\nbamboo_planRepository_1_previousRevision=2812f29b30ce2a1b5bdf5288b994732fc8f587b3\nbamboo_planRepository_1_type=git\nbamboo_repository_18841602_branch_name=master\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_1_name=medici-gwt-web\nbamboo_planRepository_branch=master\nbamboo_planRepository_2_branchName=master\nbamboo_repository_34635787_name=medici-gwt-web\nbamboo_planRepository_username=\nbamboo_planRepository_branchName=master\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.7.0_60\nbamboo_capability_system_os=linux\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_repository_34635787_branch_name=master\nbamboo_shortJobName=default\nbamboo_repository_branch_name=master\nbamboo_agentId=57573377\nbamboo_planRepository_previousRevision=2812f29b30ce2a1b5bdf5288b994732fc8f587b3\nbamboo_planRepository_1_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_2_type=git\nbamboo_repository_34635787_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nANT_HOME=/home/bamboo/apache-ant-1.9.4\nbamboo_planRepository_2_name=cet\nbamboo_planRepository_1_username=\nbamboo_planRepository_2_username=\nbamboo_planRepository_name=medici-gwt-web\nbamboo_buildNumber=94\nbamboo_capability_system_hostname=buildserver-2\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_buildTimeStamp=2014-12-19T19:42:21.593-06:00\nPATH=/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/node-v0.10.28/bin:/usr/bin:/bin\n build 19-Dec-2014 19:43:05 Buildfile: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml build 19-Dec-2014 19:43:06 build 19-Dec-2014 19:43:06 cetbean: build 19-Dec-2014 19:43:06 [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass build 19-Dec-2014 19:43:06 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:85: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds build 19-Dec-2014 19:43:06 [javac] Compiling 65 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass build 19-Dec-2014 19:43:07 [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5 build 19-Dec-2014 19:43:08 [javac] 1 warning build 19-Dec-2014 19:43:08 [jar] Building jar: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/lib/cet-bean.jar build 19-Dec-2014 19:43:08 [delete] Deleting directory /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass build 19-Dec-2014 19:43:08 [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass build 19-Dec-2014 19:43:08 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:100: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds build 19-Dec-2014 19:43:08 [javac] Compiling 97 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass build 19-Dec-2014 19:43:08 [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5 build 19-Dec-2014 19:43:09 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:48: warning: BASE64Encoder is internal proprietary API and may be removed in a future release build 19-Dec-2014 19:43:09 [javac] import sun.misc.BASE64Encoder; build 19-Dec-2014 19:43:09 [javac] ^ build 19-Dec-2014 19:43:10 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/DatasetBeanUtil.java:66: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:10 [javac] return Cet.DATASET; build 19-Dec-2014 19:43:10 [javac] ^ build 19-Dec-2014 19:43:10 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/TagEventBeanUtil.java:72: warning: [deprecation] encode(String) in URLEncoder has been deprecated build 19-Dec-2014 19:43:10 [javac] return Resource.uriRef("tag:cet.ncsa.uiuc.edu,2008:/tag#" + URLEncoder.encode(tag)); //$NON-NLS-1$ build 19-Dec-2014 19:43:10 [javac] ^ build 19-Dec-2014 19:43:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/VisualizationBeanUtil.java:73: warning: [deprecation] clone(T,PersonBean) in TupeloBeanUtil has been deprecated build 19-Dec-2014 19:43:11 [javac] public VisualizationBean clone(VisualizationBean bean, PersonBean creator) build 19-Dec-2014 19:43:11 [javac] ^ build 19-Dec-2014 19:43:11 [javac] where T is a type-variable: build 19-Dec-2014 19:43:11 [javac] T extends CETBean declared in class TupeloBeanUtil build 19-Dec-2014 19:43:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/VisualizationBeanUtil.java:83: warning: [deprecation] clone(ConfigurationBean,PersonBean) in ConfigurationBeanUtil has been deprecated build 19-Dec-2014 19:43:11 [javac] ConfigurationBean configuration = cbu.clone(bean.getConfiguration(), creator); build 19-Dec-2014 19:43:11 [javac] ^ build 19-Dec-2014 19:43:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:442: warning: [deprecation] ADMIN_ROLE in MMDB has been deprecated build 19-Dec-2014 19:43:11 [javac] if (!t.getObject().equals(MMDB.ADMIN_ROLE) && !t.getObject().equals(MMDB.REGULAR_MEMBER_ROLE)) { build 19-Dec-2014 19:43:11 [javac] ^ build 19-Dec-2014 19:43:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:442: warning: [deprecation] REGULAR_MEMBER_ROLE in MMDB has been deprecated build 19-Dec-2014 19:43:11 [javac] if (!t.getObject().equals(MMDB.ADMIN_ROLE) && !t.getObject().equals(MMDB.REGULAR_MEMBER_ROLE)) { build 19-Dec-2014 19:43:11 [javac] ^ build 19-Dec-2014 19:43:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:452: warning: [deprecation] ADMIN_ROLE in MMDB has been deprecated build 19-Dec-2014 19:43:11 [javac] createRole(MMDB.ADMIN_ROLE, "Administrator"); build 19-Dec-2014 19:43:11 [javac] ^ build 19-Dec-2014 19:43:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:453: warning: [deprecation] REGULAR_MEMBER_ROLE in MMDB has been deprecated build 19-Dec-2014 19:43:11 [javac] createRole(MMDB.REGULAR_MEMBER_ROLE, "Member"); build 19-Dec-2014 19:43:11 [javac] ^ build 19-Dec-2014 19:43:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:78: warning: BASE64Encoder is internal proprietary API and may be removed in a future release build 19-Dec-2014 19:43:11 [javac] BASE64Encoder encoder = new BASE64Encoder(); build 19-Dec-2014 19:43:11 [javac] ^ build 19-Dec-2014 19:43:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:78: warning: BASE64Encoder is internal proprietary API and may be removed in a future release build 19-Dec-2014 19:43:11 [javac] BASE64Encoder encoder = new BASE64Encoder(); build 19-Dec-2014 19:43:11 [javac] ^ build 19-Dec-2014 19:43:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/Cyberintegrator.java:57: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:11 [javac] static final public Resource DATASET = Cet.DATASET; build 19-Dec-2014 19:43:11 [javac] ^ build 19-Dec-2014 19:43:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:28: warning: [deprecation] Rdf in Vocabulary has been deprecated build 19-Dec-2014 19:43:11 [javac] uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.PARAMETER)); //$NON-NLS-1$ build 19-Dec-2014 19:43:11 [javac] ^ build 19-Dec-2014 19:43:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:40: warning: [deprecation] Rdf in Vocabulary has been deprecated build 19-Dec-2014 19:43:11 [javac] uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.PARAMETER)); //$NON-NLS-1$ build 19-Dec-2014 19:43:11 [javac] ^ build 19-Dec-2014 19:43:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:58: warning: [deprecation] Rdf in Vocabulary has been deprecated build 19-Dec-2014 19:43:11 [javac] uf.addPattern(new Pattern("input", Vocabulary.Rdf.TYPE, Cyberintegrator.DATASET)); //$NON-NLS-1$ build 19-Dec-2014 19:43:11 [javac] ^ build 19-Dec-2014 19:43:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:82: warning: [deprecation] Rdf in Vocabulary has been deprecated build 19-Dec-2014 19:43:11 [javac] uf.addPattern(new Pattern("output", Vocabulary.Rdf.TYPE, Cyberintegrator.DATASET)); //$NON-NLS-1$ build 19-Dec-2014 19:43:11 [javac] ^ build 19-Dec-2014 19:43:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowToolDataDAO.java:26: warning: [deprecation] Rdf in Vocabulary has been deprecated build 19-Dec-2014 19:43:11 [javac] uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.TOOL_DATA)); //$NON-NLS-1$ build 19-Dec-2014 19:43:11 [javac] ^ build 19-Dec-2014 19:43:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowToolDataDAO.java:41: warning: [deprecation] Rdf in Vocabulary has been deprecated build 19-Dec-2014 19:43:11 [javac] uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.TOOL_DATA)); //$NON-NLS-1$ build 19-Dec-2014 19:43:11 [javac] ^ build 19-Dec-2014 19:43:11 [javac] 19 warnings build 19-Dec-2014 19:43:11 [jar] Building jar: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/lib/cet-bean-tupelo.jar build 19-Dec-2014 19:43:11 [delete] Deleting directory /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass build 19-Dec-2014 19:43:11 build 19-Dec-2014 19:43:11 updateversion: build 19-Dec-2014 19:43:11 build 19-Dec-2014 19:43:11 clean: build 19-Dec-2014 19:43:11 build 19-Dec-2014 19:43:11 compile: build 19-Dec-2014 19:43:11 [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes build 19-Dec-2014 19:43:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:127: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds build 19-Dec-2014 19:43:11 [javac] Compiling 526 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes build 19-Dec-2014 19:43:12 [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5 build 19-Dec-2014 19:43:12 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/LoginPage.java:63: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 19-Dec-2014 19:43:12 [javac] import com.google.gwt.user.client.DeferredCommand; build 19-Dec-2014 19:43:12 [javac] ^ build 19-Dec-2014 19:43:12 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/SignupPage.java:53: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 19-Dec-2014 19:43:12 [javac] import com.google.gwt.user.client.DeferredCommand; build 19-Dec-2014 19:43:12 [javac] ^ build 19-Dec-2014 19:43:12 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/TagsWidget.java:56: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 19-Dec-2014 19:43:12 [javac] import com.google.gwt.user.client.DeferredCommand; build 19-Dec-2014 19:43:12 [javac] ^ build 19-Dec-2014 19:43:12 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/TextDialogView.java:46: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 19-Dec-2014 19:43:12 [javac] import com.google.gwt.user.client.DeferredCommand; build 19-Dec-2014 19:43:12 [javac] ^ build 19-Dec-2014 19:43:12 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/TagDialogViewWSuggest.java:46: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 19-Dec-2014 19:43:12 [javac] import com.google.gwt.user.client.DeferredCommand; build 19-Dec-2014 19:43:12 [javac] ^ build 19-Dec-2014 19:43:13 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/DatasetTableFourColumnView.java:63: warning: [deprecation] getShortDateTimeFormat() in DateTimeFormat has been deprecated build 19-Dec-2014 19:43:13 [javac] private final static DateTimeFormat DATE_TIME_FORMAT = DateTimeFormat.getShortDateTimeFormat(); build 19-Dec-2014 19:43:13 [javac] ^ build 19-Dec-2014 19:43:13 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/DatasetTableOneColumnView.java:83: warning: [deprecation] getShortDateTimeFormat() in DateTimeFormat has been deprecated build 19-Dec-2014 19:43:13 [javac] private final static DateTimeFormat DATE_TIME_FORMAT = DateTimeFormat.getShortDateTimeFormat(); build 19-Dec-2014 19:43:13 [javac] ^ build 19-Dec-2014 19:43:13 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/MMDB.java:444: warning: [deprecation] decodeComponent(String) in URL has been deprecated build 19-Dec-2014 19:43:13 [javac] params.put(URL.decodeComponent(terms[0]), URL.decodeComponent(terms[1])); build 19-Dec-2014 19:43:13 [javac] ^ build 19-Dec-2014 19:43:13 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/MMDB.java:444: warning: [deprecation] decodeComponent(String) in URL has been deprecated build 19-Dec-2014 19:43:13 [javac] params.put(URL.decodeComponent(terms[0]), URL.decodeComponent(terms[1])); build 19-Dec-2014 19:43:13 [javac] ^ build 19-Dec-2014 19:43:13 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/UploadWidget.java:92: warning: [deprecation] parse(String) in JSONParser has been deprecated build 19-Dec-2014 19:43:13 [javac] JSONValue value = JSONParser.parse(jsonText); build 19-Dec-2014 19:43:13 [javac] ^ build 19-Dec-2014 19:43:14 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/AnnotationView.java:104: warning: [deprecation] getMediumDateFormat() in DateTimeFormat has been deprecated build 19-Dec-2014 19:43:14 [javac] mediumDate = DateTimeFormat.getMediumDateFormat().format( build 19-Dec-2014 19:43:14 [javac] ^ build 19-Dec-2014 19:43:14 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/AnnotationView.java:107: warning: [deprecation] getShortTimeFormat() in DateTimeFormat has been deprecated build 19-Dec-2014 19:43:14 [javac] shortTime = DateTimeFormat.getShortTimeFormat().format( build 19-Dec-2014 19:43:14 [javac] ^ build 19-Dec-2014 19:43:14 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/CollectionInfoWidget.java:106: warning: [deprecation] getLongDateFormat() in DateTimeFormat has been deprecated build 19-Dec-2014 19:43:14 [javac] descriptionPanel.add(new Label(DateTimeFormat.getLongDateFormat().format(collection.getCreationDate()))); build 19-Dec-2014 19:43:14 [javac] ^ build 19-Dec-2014 19:43:14 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/CollectionPage.java:398: warning: [deprecation] getFullDateFormat() in DateTimeFormat has been deprecated build 19-Dec-2014 19:43:14 [javac] DateTimeFormat formatter = DateTimeFormat.getFullDateFormat(); build 19-Dec-2014 19:43:14 [javac] ^ build 19-Dec-2014 19:43:14 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/TitlePanel.java:68: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 19-Dec-2014 19:43:14 [javac] public TitlePanel(String title) { build 19-Dec-2014 19:43:14 [javac] ^ build 19-Dec-2014 19:43:14 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/EditableLabel.java:161: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 19-Dec-2014 19:43:14 [javac] DeferredCommand.addCommand(new Command() { build 19-Dec-2014 19:43:14 [javac] ^ build 19-Dec-2014 19:43:14 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/DatasetInfoWidget.java:107: warning: [deprecation] getLongDateFormat() in DateTimeFormat has been deprecated build 19-Dec-2014 19:43:14 [javac] descriptionPanel.add(new Label(DateTimeFormat.getLongDateFormat().format(dataset.getDate()))); build 19-Dec-2014 19:43:14 [javac] ^ build 19-Dec-2014 19:43:14 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/DatasetWidget.java:597: warning: [deprecation] toLocaleString() in Date has been deprecated build 19-Dec-2014 19:43:14 [javac] userViewTable.setText(row, 0, ua.getWhen().toLocaleString()); build 19-Dec-2014 19:43:14 [javac] ^ build 19-Dec-2014 19:43:14 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/InfoWidget.java:162: warning: [deprecation] getShortDateTimeFormat() in DateTimeFormat has been deprecated build 19-Dec-2014 19:43:14 [javac] date += DateTimeFormat.getShortDateTimeFormat().format(data.getDate()); build 19-Dec-2014 19:43:14 [javac] ^ build 19-Dec-2014 19:43:14 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/LoginPage.java:173: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 19-Dec-2014 19:43:14 [javac] DeferredCommand.addCommand(new Command() { build 19-Dec-2014 19:43:14 [javac] ^ build 19-Dec-2014 19:43:14 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/MapPage.java:165: warning: [deprecation] getShortDateFormat() in DateTimeFormat has been deprecated build 19-Dec-2014 19:43:14 [javac] mainPanel.setText(2, 1, DateTimeFormat.getShortDateFormat().format(dataset.getDate())); build 19-Dec-2014 19:43:14 [javac] ^ build 19-Dec-2014 19:43:14 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/SignupPage.java:206: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 19-Dec-2014 19:43:14 [javac] DeferredCommand.addCommand(new Command() { build 19-Dec-2014 19:43:14 [javac] ^ build 19-Dec-2014 19:43:14 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/TagsPage.java:105: warning: [deprecation] encodeComponent(String) in URL has been deprecated build 19-Dec-2014 19:43:14 [javac] Hyperlink link = new Hyperlink(linkText, "tag?title=" + URL.encodeComponent(tag)); build 19-Dec-2014 19:43:14 [javac] ^ build 19-Dec-2014 19:43:14 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/TagsWidget.java:167: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 19-Dec-2014 19:43:14 [javac] DeferredCommand.addCommand(new Command() { build 19-Dec-2014 19:43:14 [javac] ^ build 19-Dec-2014 19:43:14 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/preview/PreviewGeoCollectionBeanWidget.java:224: warning: [deprecation] getShortDateFormat() in DateTimeFormat has been deprecated build 19-Dec-2014 19:43:14 [javac] html += "Uploaded:" + DateTimeFormat.getShortDateFormat().format(dataset.getDate()) + ""; build 19-Dec-2014 19:43:14 [javac] ^ build 19-Dec-2014 19:43:14 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/preview/PreviewPyramidBeanWidget.java:56: warning: [deprecation] encodeComponent(String) in URL has been deprecated build 19-Dec-2014 19:43:14 [javac] showSeadragon(RestEndpoints.PYRAMID_URL + URL.encodeComponent(getPreviewBean().getUri()) + "/xml", getWidgetID()); //$NON-NLS-1$ build 19-Dec-2014 19:43:14 [javac] ^ build 19-Dec-2014 19:43:14 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/TextDialogView.java:100: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 19-Dec-2014 19:43:14 [javac] DeferredCommand.addCommand(new Command() { build 19-Dec-2014 19:43:14 [javac] ^ build 19-Dec-2014 19:43:14 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/DynamicGridView.java:73: warning: [deprecation] getShortDateTimeFormat() in DateTimeFormat has been deprecated build 19-Dec-2014 19:43:14 [javac] private final static DateTimeFormat DATE_TIME_FORMAT = DateTimeFormat.getShortDateTimeFormat(); build 19-Dec-2014 19:43:14 [javac] ^ build 19-Dec-2014 19:43:14 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/DynamicGridView.java:152: warning: [deprecation] getShortDateFormat() in DateTimeFormat has been deprecated build 19-Dec-2014 19:43:14 [javac] Label dateuploaded = new Label(DateTimeFormat.getShortDateFormat().format(date)); build 19-Dec-2014 19:43:14 [javac] ^ build 19-Dec-2014 19:43:14 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/DynamicListView.java:67: warning: [deprecation] getShortDateTimeFormat() in DateTimeFormat has been deprecated build 19-Dec-2014 19:43:14 [javac] private final static DateTimeFormat DATE_TIME_FORMAT = DateTimeFormat.getShortDateTimeFormat(); build 19-Dec-2014 19:43:14 [javac] ^ build 19-Dec-2014 19:43:14 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/DynamicListView.java:136: warning: [deprecation] getMediumDateTimeFormat() in DateTimeFormat has been deprecated build 19-Dec-2014 19:43:14 [javac] informationPanel.setWidget(2, 0, new Label(DateTimeFormat.getMediumDateTimeFormat().format(date))); build 19-Dec-2014 19:43:14 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/TagDialogViewWSuggest.java:106: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 19-Dec-2014 19:43:15 [javac] DeferredCommand.addCommand(new Command() { build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/rest/RestServlet.java:599: warning: [deprecation] Date(String) in Date has been deprecated build 19-Dec-2014 19:43:15 [javac] Date d = new Date(request.getHeader("If-Modified-Since")); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/rest/RssServlet.java:97: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] u.addPattern("s", Rdf.TYPE, Cet.DATASET); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/AccessControl.java:92: warning: [deprecation] VIEW_ADMIN_PAGES in MMDB has been deprecated build 19-Dec-2014 19:43:15 [javac] return rbac.checkPermission(Resource.uriRef(personUri), MMDB.VIEW_ADMIN_PAGES); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/ContextSetupListener.java:614: warning: [deprecation] addUser(String,String,String,String) in ContextAuthentication has been deprecated build 19-Dec-2014 19:43:15 [javac] userid = auth.addUser(username, email, fullname, password); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/DatasourceBeanPreprocessor.java:125: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] uf.addPattern("s", Rdf.TYPE, Cet.DATASET); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/PermissionResourceMap.java:63: warning: [deprecation] VIEW_ADMIN_PAGES in MMDB has been deprecated build 19-Dec-2014 19:43:15 [javac] map.put(Permission.VIEW_ADMIN_PAGES, MMDB.VIEW_ADMIN_PAGES); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/PermissionResourceMap.java:64: warning: [deprecation] VIEW_MEMBER_PAGES in MMDB has been deprecated build 19-Dec-2014 19:43:15 [javac] map.put(Permission.VIEW_MEMBER_PAGES, MMDB.VIEW_MEMBER_PAGES); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/RoleResourceMap.java:64: warning: [deprecation] ADMIN_ROLE in MMDB has been deprecated build 19-Dec-2014 19:43:15 [javac] toResource.put(Role.ADMIN, MMDB.ADMIN_ROLE); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/RoleResourceMap.java:65: warning: [deprecation] REGULAR_MEMBER_ROLE in MMDB has been deprecated build 19-Dec-2014 19:43:15 [javac] toResource.put(Role.MEMBER, MMDB.REGULAR_MEMBER_ROLE); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/RoleResourceMap.java:68: warning: [deprecation] ADMIN_ROLE in MMDB has been deprecated build 19-Dec-2014 19:43:15 [javac] toRole.put(MMDB.ADMIN_ROLE, Role.ADMIN); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/RoleResourceMap.java:69: warning: [deprecation] REGULAR_MEMBER_ROLE in MMDB has been deprecated build 19-Dec-2014 19:43:15 [javac] toRole.put(MMDB.REGULAR_MEMBER_ROLE, Role.MEMBER); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/TupeloStore.java:540: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] } else if (Cet.DATASET.equals(type)) { build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/TupeloStore.java:637: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] u.addPattern("descriptor", Rdf.TYPE, Cet.DATASET); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/TupeloStore.java:661: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] u.addPattern("member", Rdf.TYPE, Cet.DATASET); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/TupeloStore.java:945: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] u.addPattern("d", Rdf.TYPE, Cet.DATASET); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/UploadBlob.java:408: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] t.addType(Cet.DATASET); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/AnnotateResourceHandler.java:84: warning: [deprecation] getId() in AnnotateResource has been deprecated build 19-Dec-2014 19:43:15 [javac] String resource = arg0.getId(); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GeoSearchHandler.java:89: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] u.addPattern("d", Rdf.TYPE, Cet.DATASET); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GetCollectionHandler.java:289: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] u.addPattern("s", Rdf.TYPE, Cet.DATASET); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GetCollectionHandler.java:329: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] if (Cet.DATASET.equals(row.get(1)) && !row.get(5).getString().equals(user)) { build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GetDatasetsByTagHandler.java:95: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] uf.addPattern("dataset", Rdf.TYPE, Cet.DATASET); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GetDerivedFromHandler.java:92: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] u.addPattern("input", Rdf.TYPE, Cet.DATASET); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GetRecentActivityHandler.java:98: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] uf.addPattern("dataset", Rdf.TYPE, Cet.DATASET); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GetUsersHandler.java:110: warning: [deprecation] toLocaleString() in Date has been deprecated build 19-Dec-2014 19:43:15 [javac] user.lastlogin = cal.getTime().toLocaleString(); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/ListQueryHandler.java:146: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] if (!row.get(1).equals(Cet.DATASET) && !row.get(1).equals(CollectionBeanUtil.COLLECTION_TYPE)) { build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/SystemInfoHandler.java:140: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] if (Cet.DATASET.equals(row.get(1))) { build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ItemServicesImpl.java:938: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] if (itemType.equals(Cet.DATASET)) { build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/CollectionsRestService.java:167: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] return addItemToCollection(id, item_id, Cet.DATASET, request); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:310: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] return getTopLevelItems(Cet.DATASET, datasetBasics, userId); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:365: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] ValidItem item = new ValidItem(itemId, Cet.DATASET, userId); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:447: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] return markItemAsDeleted(id, Cet.DATASET, request); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:462: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] return getItemTagsByIdAsJSON(id, Cet.DATASET, request); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:477: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] return addTagsToItem(id, tags, Cet.DATASET, request); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:492: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] return deleteTagsFromItem(id, tags, Cet.DATASET, request); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:561: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] return getItemsByMetadata(pred, type, value, Cet.DATASET, request); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:615: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] return getItemsThatAreGeoLayers(Cet.DATASET, null, request); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:631: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] return getItemsThatAreGeoFeatures(Cet.DATASET, null, request); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/TagsRestService.java:105: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] return getMetadataByReverseRelationship((UriRef) TagEventBeanUtil.createTagUri(tag), Tags.TAGGED_WITH_TAG, datasetBasics, userId, Cet.DATASET); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/TagsRestService.java:144: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] return getItemsThatAreGeoLayers(Cet.DATASET, (UriRef) TagEventBeanUtil.createTagUri(tagString), request); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/TagsRestService.java:160: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] return getItemsThatAreGeoFeatures(Cet.DATASET, (UriRef) TagEventBeanUtil.createTagUri(tagString), request); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/util/BeanFiller.java:116: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] t.addType(Cet.DATASET); build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/webdav/CollectionBeanResource.java:114: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] uf.addPattern("data", Rdf.TYPE, Cet.DATASET); //$NON-NLS-1$ build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/webdav/PersonBeanResource.java:99: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] uf.addPattern("data", Rdf.TYPE, Cet.DATASET); //$NON-NLS-1$ build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/webdav/TagBeanResource.java:99: warning: [deprecation] DATASET in Cet has been deprecated build 19-Dec-2014 19:43:15 [javac] uf.addPattern("data", Rdf.TYPE, Cet.DATASET); //$NON-NLS-1$ build 19-Dec-2014 19:43:15 [javac] ^ build 19-Dec-2014 19:43:15 [javac] Note: Some input files use unchecked or unsafe operations. build 19-Dec-2014 19:43:15 [javac] Note: Recompile with -Xlint:unchecked for details. build 19-Dec-2014 19:43:15 [javac] 77 warnings build 19-Dec-2014 19:43:15 build 19-Dec-2014 19:43:15 gwtc: build 19-Dec-2014 19:43:16 [java] Compiling module edu.illinois.ncsa.mmdb.web.MMDB build 19-Dec-2014 19:43:52 [java] Compiling 6 permutations build 19-Dec-2014 19:43:52 [java] Compiling permutation 0... build 19-Dec-2014 19:44:03 [java] Compiling permutation 1... build 19-Dec-2014 19:44:13 [java] Compiling permutation 2... build 19-Dec-2014 19:44:22 [java] Compiling permutation 3... build 19-Dec-2014 19:44:29 [java] Compiling permutation 4... build 19-Dec-2014 19:44:37 [java] Compiling permutation 5... build 19-Dec-2014 19:44:45 [java] Compile of permutations succeeded build 19-Dec-2014 19:44:46 [java] Linking into /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/mmdb build 19-Dec-2014 19:44:46 [java] Link succeeded build 19-Dec-2014 19:44:46 [java] Compilation succeeded -- 89.887s build 19-Dec-2014 19:44:47 [java] Compiling module edu.illinois.ncsa.mmdb.web.Embed build 19-Dec-2014 19:45:11 [java] Compiling 6 permutations build 19-Dec-2014 19:45:11 [java] Compiling permutation 0... build 19-Dec-2014 19:45:17 [java] Compiling permutation 1... build 19-Dec-2014 19:45:21 [java] Compiling permutation 2... build 19-Dec-2014 19:45:26 [java] Compiling permutation 3... build 19-Dec-2014 19:45:30 [java] Compiling permutation 4... build 19-Dec-2014 19:45:34 [java] Compiling permutation 5... build 19-Dec-2014 19:45:39 [java] Compile of permutations succeeded build 19-Dec-2014 19:45:39 [java] Linking into /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/embed build 19-Dec-2014 19:45:39 [java] Link succeeded build 19-Dec-2014 19:45:39 [java] Compilation succeeded -- 52.016s build 19-Dec-2014 19:45:39 build 19-Dec-2014 19:45:39 resources: build 19-Dec-2014 19:45:39 [copy] Copying 7 files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes build 19-Dec-2014 19:45:39 [copy] Copying 1 file to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes build 19-Dec-2014 19:45:39 build 19-Dec-2014 19:45:39 war: build 19-Dec-2014 19:45:40 [zip] Building zip: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/medici.war build 19-Dec-2014 19:45:43 build 19-Dec-2014 19:45:43 bamboo: build 19-Dec-2014 19:45:43 build 19-Dec-2014 19:45:43 BUILD SUCCESSFUL build 19-Dec-2014 19:45:43 Total time: 2 minutes 38 seconds simple 19-Dec-2014 19:45:44 Finished task 'Web App' with result: Success simple 19-Dec-2014 19:45:44 Starting task 'Geo Browse' of type 'com.atlassian.bamboo.plugins.ant:task.builder.ant' command 19-Dec-2014 19:45:44 Beginning to execute external process for build 'MMDB - Medici 1 GWT - default #94 (MMDB-MEDICI-JOB1-94)'\n ... running command line: \n/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 clean war\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse\n ... using extra environment variables: \nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_05\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nJAVA_HOME=/home/bamboo/jdk1.7.0_60\nbamboo_repository_18841602_previous_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_planRepository_type=git\nbamboo_shortPlanName=Medici 1 GWT\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_planKey=MMDB-MEDICI\nbamboo_repository_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_1_branchName=master\nbamboo_repository_18841602_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_repository_34635787_previous_revision_number=2812f29b30ce2a1b5bdf5288b994732fc8f587b3\nbamboo_shortPlanKey=MEDICI\nbamboo_shortJobKey=JOB1\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_planRepository_1_branch=master\nbamboo_repository_revision_number=be4a91e17aec92deb8437557b40e29ab99a26c72\nbamboo_repository_18841602_name=cet\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.2.1\nbamboo_planRepository_2_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planName=MMDB - Medici 1 GWT\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-94\nbamboo_capability_system_jdk_JDK_1_7_0_60=/home/bamboo/jdk1.7.0_60\nbamboo_buildResultKey=MMDB-MEDICI-JOB1-94\nbamboo_planRepository_revision=be4a91e17aec92deb8437557b40e29ab99a26c72\nbamboo_repository_git_username=\nbamboo_buildKey=MMDB-MEDICI-JOB1\nbamboo_repository_previous_revision_number=2812f29b30ce2a1b5bdf5288b994732fc8f587b3\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_34635787_git_branch=master\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1\nbamboo_repository_18841602_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_repository_18841602_git_username=\nbamboo_planRepository_2_previousRevision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_buildPlanName=MMDB - Medici 1 GWT - default\nbamboo_repository_name=cet\nbamboo_planRepository_2_revision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_repository_18841602_git_branch=master\nbamboo_repository_34635787_git_username=\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-94\nbamboo_repository_34635787_revision_number=be4a91e17aec92deb8437557b40e29ab99a26c72\nbamboo_system_getTestsToPass=\nbamboo_planRepository_1_revision=be4a91e17aec92deb8437557b40e29ab99a26c72\nbamboo_repository_git_branch=master\nbamboo_planRepository_2_branch=master\nbamboo_planRepository_1_previousRevision=2812f29b30ce2a1b5bdf5288b994732fc8f587b3\nbamboo_planRepository_1_type=git\nbamboo_repository_18841602_branch_name=master\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_1_name=medici-gwt-web\nbamboo_build_commandline_com_atlassian_bamboo_plugins_ant_task_builder_ant_2=/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 bamboo -Dbamboo.version="master#94"\nbamboo_planRepository_branch=master\nbamboo_planRepository_2_branchName=master\nbamboo_repository_34635787_name=medici-gwt-web\nbamboo_planRepository_username=\nbamboo_planRepository_branchName=master\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.7.0_60\nbamboo_capability_system_os=linux\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_repository_34635787_branch_name=master\nbamboo_shortJobName=default\nbamboo_repository_branch_name=master\nbamboo_agentId=57573377\nbamboo_planRepository_previousRevision=2812f29b30ce2a1b5bdf5288b994732fc8f587b3\nbamboo_planRepository_1_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_2_type=git\nbamboo_repository_34635787_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nANT_HOME=/home/bamboo/apache-ant-1.9.4\nbamboo_planRepository_2_name=cet\nbamboo_planRepository_1_username=\nbamboo_planRepository_2_username=\nbamboo_planRepository_name=medici-gwt-web\nbamboo_buildNumber=94\nbamboo_capability_system_hostname=buildserver-2\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_buildTimeStamp=2014-12-19T19:42:21.593-06:00\nPATH=/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/node-v0.10.28/bin:/usr/bin:/bin\n build 19-Dec-2014 19:45:44 Buildfile: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse/build.xml build 19-Dec-2014 19:45:45 build 19-Dec-2014 19:45:45 clean: build 19-Dec-2014 19:45:45 build 19-Dec-2014 19:45:45 clean: build 19-Dec-2014 19:45:45 build 19-Dec-2014 19:45:45 resources: build 19-Dec-2014 19:45:45 [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse/war/WEB-INF/classes build 19-Dec-2014 19:45:45 [copy] Copying 3 files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse/war/WEB-INF/classes build 19-Dec-2014 19:45:45 build 19-Dec-2014 19:45:45 compile: build 19-Dec-2014 19:45:45 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse/build.xml:68: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds build 19-Dec-2014 19:45:45 [javac] Compiling 24 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse/war/WEB-INF/classes build 19-Dec-2014 19:45:45 [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.6 build 19-Dec-2014 19:45:47 [javac] 1 warning build 19-Dec-2014 19:45:47 build 19-Dec-2014 19:45:47 gwtc: build 19-Dec-2014 19:45:48 [java] Compiling module edu.illinois.ncsa.medici.geowebapp.Geo_webapp build 19-Dec-2014 19:46:05 [java] Compiling 6 permutations build 19-Dec-2014 19:46:05 [java] Compiling permutation 0... build 19-Dec-2014 19:46:09 [java] Compiling permutation 1... build 19-Dec-2014 19:46:12 [java] Compiling permutation 2... build 19-Dec-2014 19:46:14 [java] Compiling permutation 3... build 19-Dec-2014 19:46:17 [java] Compiling permutation 4... build 19-Dec-2014 19:46:19 [java] Compiling permutation 5... build 19-Dec-2014 19:46:22 [java] Compile of permutations succeeded build 19-Dec-2014 19:46:22 [java] Linking into /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse/war/geobrowse build 19-Dec-2014 19:46:22 [java] Link succeeded build 19-Dec-2014 19:46:22 [java] Compilation succeeded -- 34.250s build 19-Dec-2014 19:46:22 build 19-Dec-2014 19:46:22 war: build 19-Dec-2014 19:46:22 [zip] Building zip: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse/geobrowse.war build 19-Dec-2014 19:46:24 build 19-Dec-2014 19:46:24 BUILD SUCCESSFUL build 19-Dec-2014 19:46:24 Total time: 39 seconds simple 19-Dec-2014 19:46:24 Finished task 'Geo Browse' with result: Success simple 19-Dec-2014 19:46:24 Starting task 'Dashboard' of type 'com.atlassian.bamboo.plugins.ant:task.builder.ant' command 19-Dec-2014 19:46:24 Beginning to execute external process for build 'MMDB - Medici 1 GWT - default #94 (MMDB-MEDICI-JOB1-94)'\n ... running command line: \n/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 clean war\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/dashboard\n ... using extra environment variables: \nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_05\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nJAVA_HOME=/home/bamboo/jdk1.7.0_60\nbamboo_repository_18841602_previous_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_planRepository_type=git\nbamboo_shortPlanName=Medici 1 GWT\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_planKey=MMDB-MEDICI\nbamboo_repository_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_1_branchName=master\nbamboo_repository_18841602_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_repository_34635787_previous_revision_number=2812f29b30ce2a1b5bdf5288b994732fc8f587b3\nbamboo_shortPlanKey=MEDICI\nbamboo_shortJobKey=JOB1\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_planRepository_1_branch=master\nbamboo_repository_revision_number=be4a91e17aec92deb8437557b40e29ab99a26c72\nbamboo_repository_18841602_name=cet\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.2.1\nbamboo_planRepository_2_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planName=MMDB - Medici 1 GWT\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-94\nbamboo_capability_system_jdk_JDK_1_7_0_60=/home/bamboo/jdk1.7.0_60\nbamboo_buildResultKey=MMDB-MEDICI-JOB1-94\nbamboo_planRepository_revision=be4a91e17aec92deb8437557b40e29ab99a26c72\nbamboo_repository_git_username=\nbamboo_buildKey=MMDB-MEDICI-JOB1\nbamboo_repository_previous_revision_number=2812f29b30ce2a1b5bdf5288b994732fc8f587b3\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_34635787_git_branch=master\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1\nbamboo_repository_18841602_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_repository_18841602_git_username=\nbamboo_planRepository_2_previousRevision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_buildPlanName=MMDB - Medici 1 GWT - default\nbamboo_repository_name=cet\nbamboo_planRepository_2_revision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_repository_18841602_git_branch=master\nbamboo_repository_34635787_git_username=\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-94\nbamboo_repository_34635787_revision_number=be4a91e17aec92deb8437557b40e29ab99a26c72\nbamboo_system_getTestsToPass=\nbamboo_planRepository_1_revision=be4a91e17aec92deb8437557b40e29ab99a26c72\nbamboo_repository_git_branch=master\nbamboo_planRepository_2_branch=master\nbamboo_planRepository_1_previousRevision=2812f29b30ce2a1b5bdf5288b994732fc8f587b3\nbamboo_planRepository_1_type=git\nbamboo_repository_18841602_branch_name=master\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_1_name=medici-gwt-web\nbamboo_build_commandline_com_atlassian_bamboo_plugins_ant_task_builder_ant_2=/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 bamboo -Dbamboo.version="master#94"\nbamboo_planRepository_branch=master\nbamboo_planRepository_2_branchName=master\nbamboo_repository_34635787_name=medici-gwt-web\nbamboo_planRepository_username=\nbamboo_planRepository_branchName=master\nbamboo_build_commandline_com_atlassian_bamboo_plugins_ant_task_builder_ant_4=/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 clean war\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.7.0_60\nbamboo_capability_system_os=linux\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_repository_34635787_branch_name=master\nbamboo_shortJobName=default\nbamboo_repository_branch_name=master\nbamboo_agentId=57573377\nbamboo_planRepository_previousRevision=2812f29b30ce2a1b5bdf5288b994732fc8f587b3\nbamboo_planRepository_1_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_2_type=git\nbamboo_repository_34635787_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nANT_HOME=/home/bamboo/apache-ant-1.9.4\nbamboo_planRepository_2_name=cet\nbamboo_planRepository_1_username=\nbamboo_planRepository_2_username=\nbamboo_planRepository_name=medici-gwt-web\nbamboo_buildNumber=94\nbamboo_capability_system_hostname=buildserver-2\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_buildTimeStamp=2014-12-19T19:42:21.593-06:00\nPATH=/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/node-v0.10.28/bin:/usr/bin:/bin\n build 19-Dec-2014 19:46:24 Buildfile: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/dashboard/build.xml build 19-Dec-2014 19:46:25 build 19-Dec-2014 19:46:25 clean: build 19-Dec-2014 19:46:25 build 19-Dec-2014 19:46:25 clean: build 19-Dec-2014 19:46:25 build 19-Dec-2014 19:46:25 resources: build 19-Dec-2014 19:46:25 [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/dashboard/WebContent/WEB-INF/classes build 19-Dec-2014 19:46:25 [copy] Copying 3 files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/dashboard/WebContent/WEB-INF/classes build 19-Dec-2014 19:46:25 build 19-Dec-2014 19:46:25 compile: build 19-Dec-2014 19:46:25 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/dashboard/build.xml:77: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds build 19-Dec-2014 19:46:25 [javac] Compiling 3 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/dashboard/WebContent/WEB-INF/classes build 19-Dec-2014 19:46:26 [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5 build 19-Dec-2014 19:46:26 [javac] 1 warning build 19-Dec-2014 19:46:26 build 19-Dec-2014 19:46:26 war: build 19-Dec-2014 19:46:26 [zip] Building zip: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/dashboard/dashboard.war build 19-Dec-2014 19:46:27 build 19-Dec-2014 19:46:27 BUILD SUCCESSFUL build 19-Dec-2014 19:46:27 Total time: 2 seconds simple 19-Dec-2014 19:46:27 Finished task 'Dashboard' with result: Success simple 19-Dec-2014 19:46:27 Starting task 'Discovery' of type 'com.atlassian.bamboo.plugins.ant:task.builder.ant' command 19-Dec-2014 19:46:27 Beginning to execute external process for build 'MMDB - Medici 1 GWT - default #94 (MMDB-MEDICI-JOB1-94)'\n ... running command line: \n/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 clean war\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery\n ... using extra environment variables: \nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_05\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nJAVA_HOME=/home/bamboo/jdk1.7.0_60\nbamboo_repository_18841602_previous_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_planRepository_type=git\nbamboo_shortPlanName=Medici 1 GWT\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_planKey=MMDB-MEDICI\nbamboo_repository_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_1_branchName=master\nbamboo_repository_18841602_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_repository_34635787_previous_revision_number=2812f29b30ce2a1b5bdf5288b994732fc8f587b3\nbamboo_shortPlanKey=MEDICI\nbamboo_shortJobKey=JOB1\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_planRepository_1_branch=master\nbamboo_repository_revision_number=be4a91e17aec92deb8437557b40e29ab99a26c72\nbamboo_repository_18841602_name=cet\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.2.1\nbamboo_planRepository_2_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planName=MMDB - Medici 1 GWT\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-94\nbamboo_capability_system_jdk_JDK_1_7_0_60=/home/bamboo/jdk1.7.0_60\nbamboo_buildResultKey=MMDB-MEDICI-JOB1-94\nbamboo_planRepository_revision=be4a91e17aec92deb8437557b40e29ab99a26c72\nbamboo_repository_git_username=\nbamboo_buildKey=MMDB-MEDICI-JOB1\nbamboo_repository_previous_revision_number=2812f29b30ce2a1b5bdf5288b994732fc8f587b3\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_34635787_git_branch=master\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1\nbamboo_repository_18841602_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_repository_18841602_git_username=\nbamboo_planRepository_2_previousRevision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_buildPlanName=MMDB - Medici 1 GWT - default\nbamboo_repository_name=cet\nbamboo_planRepository_2_revision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_repository_18841602_git_branch=master\nbamboo_repository_34635787_git_username=\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-94\nbamboo_repository_34635787_revision_number=be4a91e17aec92deb8437557b40e29ab99a26c72\nbamboo_system_getTestsToPass=\nbamboo_planRepository_1_revision=be4a91e17aec92deb8437557b40e29ab99a26c72\nbamboo_repository_git_branch=master\nbamboo_planRepository_2_branch=master\nbamboo_planRepository_1_previousRevision=2812f29b30ce2a1b5bdf5288b994732fc8f587b3\nbamboo_planRepository_1_type=git\nbamboo_repository_18841602_branch_name=master\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_1_name=medici-gwt-web\nbamboo_build_commandline_com_atlassian_bamboo_plugins_ant_task_builder_ant_2=/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 bamboo -Dbamboo.version="master#94"\nbamboo_planRepository_branch=master\nbamboo_planRepository_2_branchName=master\nbamboo_repository_34635787_name=medici-gwt-web\nbamboo_planRepository_username=\nbamboo_build_commandline_com_atlassian_bamboo_plugins_ant_task_builder_ant_5=/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 clean war\nbamboo_planRepository_branchName=master\nbamboo_build_commandline_com_atlassian_bamboo_plugins_ant_task_builder_ant_4=/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 clean war\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.7.0_60\nbamboo_capability_system_os=linux\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_repository_34635787_branch_name=master\nbamboo_shortJobName=default\nbamboo_repository_branch_name=master\nbamboo_agentId=57573377\nbamboo_planRepository_previousRevision=2812f29b30ce2a1b5bdf5288b994732fc8f587b3\nbamboo_planRepository_1_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_2_type=git\nbamboo_repository_34635787_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nANT_HOME=/home/bamboo/apache-ant-1.9.4\nbamboo_planRepository_2_name=cet\nbamboo_planRepository_1_username=\nbamboo_planRepository_2_username=\nbamboo_planRepository_name=medici-gwt-web\nbamboo_buildNumber=94\nbamboo_capability_system_hostname=buildserver-2\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_buildTimeStamp=2014-12-19T19:42:21.593-06:00\nPATH=/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/node-v0.10.28/bin:/usr/bin:/bin\n build 19-Dec-2014 19:46:27 Buildfile: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery/build.xml build 19-Dec-2014 19:46:28 build 19-Dec-2014 19:46:28 clean: build 19-Dec-2014 19:46:28 build 19-Dec-2014 19:46:28 clean: build 19-Dec-2014 19:46:28 build 19-Dec-2014 19:46:28 resources: build 19-Dec-2014 19:46:28 [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery/WebContent/WEB-INF/classes build 19-Dec-2014 19:46:28 [copy] Copying 3 files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery/WebContent/WEB-INF/classes build 19-Dec-2014 19:46:28 build 19-Dec-2014 19:46:28 compile: build 19-Dec-2014 19:46:28 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery/build.xml:65: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds build 19-Dec-2014 19:46:28 [javac] Compiling 8 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery/WebContent/WEB-INF/classes build 19-Dec-2014 19:46:29 [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5 build 19-Dec-2014 19:46:29 [javac] 1 warning build 19-Dec-2014 19:46:29 [javac] Creating empty /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery/WebContent/WEB-INF/classes/org/sead/acr/discovery/package-info.class build 19-Dec-2014 19:46:29 build 19-Dec-2014 19:46:29 war: build 19-Dec-2014 19:46:30 [zip] Building zip: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery/discovery.war build 19-Dec-2014 19:46:30 build 19-Dec-2014 19:46:30 BUILD SUCCESSFUL build 19-Dec-2014 19:46:30 Total time: 2 seconds simple 19-Dec-2014 19:46:30 Finished task 'Discovery' with result: Success simple 19-Dec-2014 19:46:30 Running post build plugin 'Artifact Copier' simple 19-Dec-2014 19:46:30 Publishing an artifact: medici.war simple 19-Dec-2014 19:46:30 Finished publishing of artifact Job artifact: [medici.war], pattern: [medici.war] anchored at: [mmdb-gwt/edu.illinois.ncsa.mmdb.web] in 0s simple 19-Dec-2014 19:46:30 Publishing an artifact: geobrowse.war simple 19-Dec-2014 19:46:31 Finished publishing of artifact Job artifact: [geobrowse.war], pattern: [geobrowse.war] anchored at: [mmdb-gwt/geobrowse] in 0s simple 19-Dec-2014 19:46:31 Publishing an artifact: dashboard.war simple 19-Dec-2014 19:46:31 Finished publishing of artifact Job artifact: [dashboard.war], pattern: [dashboard.war] anchored at: [mmdb-gwt/dashboard] in 0s simple 19-Dec-2014 19:46:31 Publishing an artifact: discovery.war simple 19-Dec-2014 19:46:31 Finished publishing of artifact Job artifact: [discovery.war], pattern: [discovery.war] anchored at: [mmdb-gwt/discovery] in 0s simple 19-Dec-2014 19:46:31 Running post build plugin 'NCover Results Collector' simple 19-Dec-2014 19:46:31 Running post build plugin 'Clover Results Collector' simple 19-Dec-2014 19:46:31 Finalising the build... simple 19-Dec-2014 19:46:31 Stopping timer. simple 19-Dec-2014 19:46:31 Build MMDB-MEDICI-JOB1-94 completed. simple 19-Dec-2014 19:46:31 Running on server: post build plugin 'NCover Results Collector' simple 19-Dec-2014 19:46:31 Running on server: post build plugin 'Clover Delta Calculator' simple 19-Dec-2014 19:46:31 Running on server: post build plugin 'CheckStyle Delta Calculator' simple 19-Dec-2014 19:46:31 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 19-Dec-2014 19:46:31 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 19-Dec-2014 19:46:31 All post build plugins have finished simple 19-Dec-2014 19:46:31 Generating build results summary... simple 19-Dec-2014 19:46:31 Saving build results to disk... simple 19-Dec-2014 19:46:31 Indexing build results... simple 19-Dec-2014 19:46:31 Finished building MMDB-MEDICI-JOB1-94.