simple 29-Apr-2015 08:34:13 Build MMDB - Medici 1 GWT - default #96 (MMDB-MEDICI-JOB1-96) started building on agent buildserver-2.ncsa.illinois.edu simple 29-Apr-2015 08:34:13 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1 simple 29-Apr-2015 08:34:13 Executing build MMDB - Medici 1 GWT - default #96 (MMDB-MEDICI-JOB1-96) simple 29-Apr-2015 08:34:13 Starting task 'Source Code Checkout' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 29-Apr-2015 08:34:13 Build always requires a clean checkout simple 29-Apr-2015 08:34:13 Cleaning build directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt' simple 29-Apr-2015 08:34:13 Build always requires a clean checkout simple 29-Apr-2015 08:34:13 Cleaning build directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet' simple 29-Apr-2015 08:34:13 Updating source code to revision: d02963d12e2b853e399b1a5cac9fb4fda7d31385 simple 29-Apr-2015 08:34:13 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/.git'. simple 29-Apr-2015 08:34:13 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/.git/ simple 29-Apr-2015 08:34:14 Fetching 'refs/heads/master' from 'https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git'. Will try to do a shallow fetch. simple 29-Apr-2015 08:34:29 From https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web simple 29-Apr-2015 08:34:29 * [new branch] master -> master simple 29-Apr-2015 08:34:29 Checking out revision d02963d12e2b853e399b1a5cac9fb4fda7d31385. simple 29-Apr-2015 08:34:32 Already on 'master' simple 29-Apr-2015 08:34:32 Updated source code to revision: d02963d12e2b853e399b1a5cac9fb4fda7d31385 simple 29-Apr-2015 08:34:32 Updating source code to revision: 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e simple 29-Apr-2015 08:34:33 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/.git'. simple 29-Apr-2015 08:34:33 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/.git/ simple 29-Apr-2015 08:34:33 Fetching 'refs/heads/master' from 'https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git'. Will try to do a shallow fetch. simple 29-Apr-2015 08:34:47 From https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet simple 29-Apr-2015 08:34:47 * [new branch] master -> master simple 29-Apr-2015 08:34:47 Checking out revision 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e. simple 29-Apr-2015 08:34:48 Checking out files: 30% (901/2937) simple 29-Apr-2015 08:34:48 Checking out files: 31% (911/2937) simple 29-Apr-2015 08:34:49 Checking out files: 32% (940/2937) simple 29-Apr-2015 08:34:49 Checking out files: 33% (970/2937) simple 29-Apr-2015 08:34:49 Checking out files: 34% (999/2937) simple 29-Apr-2015 08:34:49 Checking out files: 35% (1028/2937) simple 29-Apr-2015 08:34:49 Checking out files: 36% (1058/2937) simple 29-Apr-2015 08:34:49 Checking out files: 36% (1065/2937) simple 29-Apr-2015 08:34:50 Checking out files: 37% (1087/2937) simple 29-Apr-2015 08:34:50 Checking out files: 38% (1117/2937) simple 29-Apr-2015 08:34:50 Checking out files: 39% (1146/2937) simple 29-Apr-2015 08:34:50 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'com.atlassian.bamboo.plugins.ant:task.builder.ant' command 29-Apr-2015 08:34:58 Beginning to execute external process for build 'MMDB - Medici 1 GWT - default #96 (MMDB-MEDICI-JOB1-96)'\n ... running command line: \n/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 bamboo -Dbamboo.version="master#96"\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web\n ... using extra environment variables: \nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_05\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nJAVA_HOME=/home/bamboo/jdk1.7.0_60\nbamboo_repository_18841602_previous_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_planRepository_type=git\nbamboo_shortPlanName=Medici 1 GWT\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_planKey=MMDB-MEDICI\nbamboo_repository_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_1_branchName=master\nbamboo_repository_18841602_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_repository_34635787_previous_revision_number=a972aa71ec4a1b06e6036e3710943a160cfa7ba8\nbamboo_shortPlanKey=MEDICI\nbamboo_shortJobKey=JOB1\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_planRepository_1_branch=master\nbamboo_repository_revision_number=d02963d12e2b853e399b1a5cac9fb4fda7d31385\nbamboo_repository_18841602_name=cet\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.2.1\nbamboo_planRepository_2_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planName=MMDB - Medici 1 GWT\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-96\nbamboo_capability_system_jdk_JDK_1_7_0_60=/home/bamboo/jdk1.7.0_60\nbamboo_buildResultKey=MMDB-MEDICI-JOB1-96\nbamboo_planRepository_revision=d02963d12e2b853e399b1a5cac9fb4fda7d31385\nbamboo_repository_git_username=\nbamboo_buildKey=MMDB-MEDICI-JOB1\nbamboo_repository_previous_revision_number=a972aa71ec4a1b06e6036e3710943a160cfa7ba8\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_34635787_git_branch=master\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1\nbamboo_repository_18841602_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_repository_18841602_git_username=\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_planRepository_2_previousRevision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_buildPlanName=MMDB - Medici 1 GWT - default\nbamboo_repository_name=cet\nbamboo_planRepository_2_revision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_repository_18841602_git_branch=master\nbamboo_repository_34635787_git_username=\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-96\nbamboo_repository_34635787_revision_number=d02963d12e2b853e399b1a5cac9fb4fda7d31385\nbamboo_planRepository_1_revision=d02963d12e2b853e399b1a5cac9fb4fda7d31385\nbamboo_repository_git_branch=master\nbamboo_planRepository_2_branch=master\nbamboo_planRepository_1_previousRevision=a972aa71ec4a1b06e6036e3710943a160cfa7ba8\nbamboo_planRepository_1_type=git\nbamboo_repository_18841602_branch_name=master\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_1_name=medici-gwt-web\nbamboo_planRepository_branch=master\nbamboo_planRepository_2_branchName=master\nbamboo_repository_34635787_name=medici-gwt-web\nbamboo_planRepository_username=\nbamboo_planRepository_branchName=master\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.7.0_60\nbamboo_capability_system_os=linux\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_repository_34635787_branch_name=master\nbamboo_shortJobName=default\nbamboo_repository_branch_name=master\nbamboo_agentId=57573377\nbamboo_planRepository_previousRevision=a972aa71ec4a1b06e6036e3710943a160cfa7ba8\nbamboo_planRepository_1_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_2_type=git\nbamboo_repository_34635787_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nANT_HOME=/home/bamboo/apache-ant-1.9.4\nbamboo_planRepository_2_name=cet\nbamboo_planRepository_1_username=\nbamboo_planRepository_2_username=\nbamboo_planRepository_name=medici-gwt-web\nbamboo_buildNumber=96\nbamboo_capability_system_hostname=buildserver-2\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_buildTimeStamp=2015-04-29T08:34:12.545-05:00\nPATH=/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/node-v0.10.28/bin:/usr/bin:/bin\n build 29-Apr-2015 08:34:59 Buildfile: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml build 29-Apr-2015 08:35:00 build 29-Apr-2015 08:35:00 cetbean: build 29-Apr-2015 08:35:00 [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass build 29-Apr-2015 08:35:00 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:85: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds build 29-Apr-2015 08:35:00 [javac] Compiling 65 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass build 29-Apr-2015 08:35:00 [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5 build 29-Apr-2015 08:35:02 [javac] 1 warning build 29-Apr-2015 08:35:02 [jar] Building jar: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/lib/cet-bean.jar build 29-Apr-2015 08:35:02 [delete] Deleting directory /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass build 29-Apr-2015 08:35:02 [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass build 29-Apr-2015 08:35:02 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:100: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds build 29-Apr-2015 08:35:02 [javac] Compiling 97 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass build 29-Apr-2015 08:35:02 [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5 build 29-Apr-2015 08:35:03 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:48: warning: BASE64Encoder is internal proprietary API and may be removed in a future release build 29-Apr-2015 08:35:03 [javac] import sun.misc.BASE64Encoder; build 29-Apr-2015 08:35:03 [javac] ^ build 29-Apr-2015 08:35:04 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/DatasetBeanUtil.java:66: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:04 [javac] return Cet.DATASET; build 29-Apr-2015 08:35:04 [javac] ^ build 29-Apr-2015 08:35:04 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/TagEventBeanUtil.java:72: warning: [deprecation] encode(String) in URLEncoder has been deprecated build 29-Apr-2015 08:35:04 [javac] return Resource.uriRef("tag:cet.ncsa.uiuc.edu,2008:/tag#" + URLEncoder.encode(tag)); //$NON-NLS-1$ build 29-Apr-2015 08:35:04 [javac] ^ build 29-Apr-2015 08:35:04 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/VisualizationBeanUtil.java:73: warning: [deprecation] clone(T,PersonBean) in TupeloBeanUtil has been deprecated build 29-Apr-2015 08:35:04 [javac] public VisualizationBean clone(VisualizationBean bean, PersonBean creator) build 29-Apr-2015 08:35:04 [javac] ^ build 29-Apr-2015 08:35:04 [javac] where T is a type-variable: build 29-Apr-2015 08:35:04 [javac] T extends CETBean declared in class TupeloBeanUtil build 29-Apr-2015 08:35:04 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/VisualizationBeanUtil.java:83: warning: [deprecation] clone(ConfigurationBean,PersonBean) in ConfigurationBeanUtil has been deprecated build 29-Apr-2015 08:35:04 [javac] ConfigurationBean configuration = cbu.clone(bean.getConfiguration(), creator); build 29-Apr-2015 08:35:04 [javac] ^ build 29-Apr-2015 08:35:05 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:442: warning: [deprecation] ADMIN_ROLE in MMDB has been deprecated build 29-Apr-2015 08:35:05 [javac] if (!t.getObject().equals(MMDB.ADMIN_ROLE) && !t.getObject().equals(MMDB.REGULAR_MEMBER_ROLE)) { build 29-Apr-2015 08:35:05 [javac] ^ build 29-Apr-2015 08:35:05 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:442: warning: [deprecation] REGULAR_MEMBER_ROLE in MMDB has been deprecated build 29-Apr-2015 08:35:05 [javac] if (!t.getObject().equals(MMDB.ADMIN_ROLE) && !t.getObject().equals(MMDB.REGULAR_MEMBER_ROLE)) { build 29-Apr-2015 08:35:05 [javac] ^ build 29-Apr-2015 08:35:05 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:452: warning: [deprecation] ADMIN_ROLE in MMDB has been deprecated build 29-Apr-2015 08:35:05 [javac] createRole(MMDB.ADMIN_ROLE, "Administrator"); build 29-Apr-2015 08:35:05 [javac] ^ build 29-Apr-2015 08:35:05 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:453: warning: [deprecation] REGULAR_MEMBER_ROLE in MMDB has been deprecated build 29-Apr-2015 08:35:05 [javac] createRole(MMDB.REGULAR_MEMBER_ROLE, "Member"); build 29-Apr-2015 08:35:05 [javac] ^ build 29-Apr-2015 08:35:05 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:78: warning: BASE64Encoder is internal proprietary API and may be removed in a future release build 29-Apr-2015 08:35:05 [javac] BASE64Encoder encoder = new BASE64Encoder(); build 29-Apr-2015 08:35:05 [javac] ^ build 29-Apr-2015 08:35:05 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:78: warning: BASE64Encoder is internal proprietary API and may be removed in a future release build 29-Apr-2015 08:35:05 [javac] BASE64Encoder encoder = new BASE64Encoder(); build 29-Apr-2015 08:35:05 [javac] ^ build 29-Apr-2015 08:35:05 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/Cyberintegrator.java:57: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:05 [javac] static final public Resource DATASET = Cet.DATASET; build 29-Apr-2015 08:35:05 [javac] ^ build 29-Apr-2015 08:35:05 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:28: warning: [deprecation] Rdf in Vocabulary has been deprecated build 29-Apr-2015 08:35:05 [javac] uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.PARAMETER)); //$NON-NLS-1$ build 29-Apr-2015 08:35:05 [javac] ^ build 29-Apr-2015 08:35:05 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:40: warning: [deprecation] Rdf in Vocabulary has been deprecated build 29-Apr-2015 08:35:05 [javac] uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.PARAMETER)); //$NON-NLS-1$ build 29-Apr-2015 08:35:05 [javac] ^ build 29-Apr-2015 08:35:05 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:58: warning: [deprecation] Rdf in Vocabulary has been deprecated build 29-Apr-2015 08:35:05 [javac] uf.addPattern(new Pattern("input", Vocabulary.Rdf.TYPE, Cyberintegrator.DATASET)); //$NON-NLS-1$ build 29-Apr-2015 08:35:05 [javac] ^ build 29-Apr-2015 08:35:05 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:82: warning: [deprecation] Rdf in Vocabulary has been deprecated build 29-Apr-2015 08:35:05 [javac] uf.addPattern(new Pattern("output", Vocabulary.Rdf.TYPE, Cyberintegrator.DATASET)); //$NON-NLS-1$ build 29-Apr-2015 08:35:05 [javac] ^ build 29-Apr-2015 08:35:05 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowToolDataDAO.java:26: warning: [deprecation] Rdf in Vocabulary has been deprecated build 29-Apr-2015 08:35:05 [javac] uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.TOOL_DATA)); //$NON-NLS-1$ build 29-Apr-2015 08:35:05 [javac] ^ build 29-Apr-2015 08:35:05 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowToolDataDAO.java:41: warning: [deprecation] Rdf in Vocabulary has been deprecated build 29-Apr-2015 08:35:05 [javac] uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.TOOL_DATA)); //$NON-NLS-1$ build 29-Apr-2015 08:35:05 [javac] ^ build 29-Apr-2015 08:35:05 [javac] 19 warnings build 29-Apr-2015 08:35:05 [jar] Building jar: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/lib/cet-bean-tupelo.jar build 29-Apr-2015 08:35:05 [delete] Deleting directory /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass build 29-Apr-2015 08:35:05 build 29-Apr-2015 08:35:05 updateversion: build 29-Apr-2015 08:35:06 build 29-Apr-2015 08:35:06 clean: build 29-Apr-2015 08:35:06 build 29-Apr-2015 08:35:06 compile: build 29-Apr-2015 08:35:06 [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes build 29-Apr-2015 08:35:06 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:127: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds build 29-Apr-2015 08:35:06 [javac] Compiling 535 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes build 29-Apr-2015 08:35:06 [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5 build 29-Apr-2015 08:35:07 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/LoginPage.java:63: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 29-Apr-2015 08:35:07 [javac] import com.google.gwt.user.client.DeferredCommand; build 29-Apr-2015 08:35:07 [javac] ^ build 29-Apr-2015 08:35:07 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/SignupPage.java:53: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 29-Apr-2015 08:35:07 [javac] import com.google.gwt.user.client.DeferredCommand; build 29-Apr-2015 08:35:07 [javac] ^ build 29-Apr-2015 08:35:07 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/TagsWidget.java:56: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 29-Apr-2015 08:35:07 [javac] import com.google.gwt.user.client.DeferredCommand; build 29-Apr-2015 08:35:07 [javac] ^ build 29-Apr-2015 08:35:07 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/TextDialogView.java:46: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 29-Apr-2015 08:35:07 [javac] import com.google.gwt.user.client.DeferredCommand; build 29-Apr-2015 08:35:07 [javac] ^ build 29-Apr-2015 08:35:07 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/TagDialogViewWSuggest.java:46: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 29-Apr-2015 08:35:07 [javac] import com.google.gwt.user.client.DeferredCommand; build 29-Apr-2015 08:35:07 [javac] ^ build 29-Apr-2015 08:35:08 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/DatasetTableFourColumnView.java:63: warning: [deprecation] getShortDateTimeFormat() in DateTimeFormat has been deprecated build 29-Apr-2015 08:35:08 [javac] private final static DateTimeFormat DATE_TIME_FORMAT = DateTimeFormat.getShortDateTimeFormat(); build 29-Apr-2015 08:35:08 [javac] ^ build 29-Apr-2015 08:35:08 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/DatasetTableOneColumnView.java:83: warning: [deprecation] getShortDateTimeFormat() in DateTimeFormat has been deprecated build 29-Apr-2015 08:35:08 [javac] private final static DateTimeFormat DATE_TIME_FORMAT = DateTimeFormat.getShortDateTimeFormat(); build 29-Apr-2015 08:35:08 [javac] ^ build 29-Apr-2015 08:35:08 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/MMDB.java:450: warning: [deprecation] decodeComponent(String) in URL has been deprecated build 29-Apr-2015 08:35:08 [javac] params.put(URL.decodeComponent(terms[0]), URL.decodeComponent(terms[1])); build 29-Apr-2015 08:35:08 [javac] ^ build 29-Apr-2015 08:35:08 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/MMDB.java:450: warning: [deprecation] decodeComponent(String) in URL has been deprecated build 29-Apr-2015 08:35:08 [javac] params.put(URL.decodeComponent(terms[0]), URL.decodeComponent(terms[1])); build 29-Apr-2015 08:35:08 [javac] ^ build 29-Apr-2015 08:35:08 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/UploadWidget.java:92: warning: [deprecation] parse(String) in JSONParser has been deprecated build 29-Apr-2015 08:35:08 [javac] JSONValue value = JSONParser.parse(jsonText); build 29-Apr-2015 08:35:08 [javac] ^ build 29-Apr-2015 08:35:09 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/AnnotationView.java:104: warning: [deprecation] getMediumDateFormat() in DateTimeFormat has been deprecated build 29-Apr-2015 08:35:09 [javac] mediumDate = DateTimeFormat.getMediumDateFormat().format( build 29-Apr-2015 08:35:09 [javac] ^ build 29-Apr-2015 08:35:09 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/AnnotationView.java:107: warning: [deprecation] getShortTimeFormat() in DateTimeFormat has been deprecated build 29-Apr-2015 08:35:09 [javac] shortTime = DateTimeFormat.getShortTimeFormat().format( build 29-Apr-2015 08:35:09 [javac] ^ build 29-Apr-2015 08:35:09 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/CollectionInfoWidget.java:106: warning: [deprecation] getLongDateFormat() in DateTimeFormat has been deprecated build 29-Apr-2015 08:35:09 [javac] descriptionPanel.add(new Label(DateTimeFormat.getLongDateFormat().format(collection.getCreationDate()))); build 29-Apr-2015 08:35:09 [javac] ^ build 29-Apr-2015 08:35:09 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/CollectionPage.java:398: warning: [deprecation] getFullDateFormat() in DateTimeFormat has been deprecated build 29-Apr-2015 08:35:09 [javac] DateTimeFormat formatter = DateTimeFormat.getFullDateFormat(); build 29-Apr-2015 08:35:09 [javac] ^ build 29-Apr-2015 08:35:09 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/TitlePanel.java:68: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 29-Apr-2015 08:35:09 [javac] public TitlePanel(String title) { build 29-Apr-2015 08:35:09 [javac] ^ build 29-Apr-2015 08:35:09 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/EditableLabel.java:161: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 29-Apr-2015 08:35:09 [javac] DeferredCommand.addCommand(new Command() { build 29-Apr-2015 08:35:09 [javac] ^ build 29-Apr-2015 08:35:09 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/DatasetInfoWidget.java:107: warning: [deprecation] getLongDateFormat() in DateTimeFormat has been deprecated build 29-Apr-2015 08:35:09 [javac] descriptionPanel.add(new Label(DateTimeFormat.getLongDateFormat().format(dataset.getDate()))); build 29-Apr-2015 08:35:09 [javac] ^ build 29-Apr-2015 08:35:09 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/DatasetWidget.java:597: warning: [deprecation] toLocaleString() in Date has been deprecated build 29-Apr-2015 08:35:09 [javac] userViewTable.setText(row, 0, ua.getWhen().toLocaleString()); build 29-Apr-2015 08:35:09 [javac] ^ build 29-Apr-2015 08:35:10 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/InfoWidget.java:162: warning: [deprecation] getShortDateTimeFormat() in DateTimeFormat has been deprecated build 29-Apr-2015 08:35:10 [javac] date += DateTimeFormat.getShortDateTimeFormat().format(data.getDate()); build 29-Apr-2015 08:35:10 [javac] ^ build 29-Apr-2015 08:35:10 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/LoginPage.java:173: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 29-Apr-2015 08:35:10 [javac] DeferredCommand.addCommand(new Command() { build 29-Apr-2015 08:35:10 [javac] ^ build 29-Apr-2015 08:35:10 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/MapPage.java:165: warning: [deprecation] getShortDateFormat() in DateTimeFormat has been deprecated build 29-Apr-2015 08:35:10 [javac] mainPanel.setText(2, 1, DateTimeFormat.getShortDateFormat().format(dataset.getDate())); build 29-Apr-2015 08:35:10 [javac] ^ build 29-Apr-2015 08:35:10 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/SignupPage.java:206: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 29-Apr-2015 08:35:10 [javac] DeferredCommand.addCommand(new Command() { build 29-Apr-2015 08:35:10 [javac] ^ build 29-Apr-2015 08:35:10 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/TagsPage.java:105: warning: [deprecation] encodeComponent(String) in URL has been deprecated build 29-Apr-2015 08:35:10 [javac] Hyperlink link = new Hyperlink(linkText, "tag?title=" + URL.encodeComponent(tag)); build 29-Apr-2015 08:35:10 [javac] ^ build 29-Apr-2015 08:35:10 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/TagsWidget.java:167: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 29-Apr-2015 08:35:10 [javac] DeferredCommand.addCommand(new Command() { build 29-Apr-2015 08:35:10 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/preview/PreviewGeoCollectionBeanWidget.java:224: warning: [deprecation] getShortDateFormat() in DateTimeFormat has been deprecated build 29-Apr-2015 08:35:11 [javac] html += "Uploaded:" + DateTimeFormat.getShortDateFormat().format(dataset.getDate()) + ""; build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/preview/PreviewPyramidBeanWidget.java:56: warning: [deprecation] encodeComponent(String) in URL has been deprecated build 29-Apr-2015 08:35:11 [javac] showSeadragon(RestEndpoints.PYRAMID_URL + URL.encodeComponent(getPreviewBean().getUri()) + "/xml", getWidgetID()); //$NON-NLS-1$ build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/TextDialogView.java:100: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 29-Apr-2015 08:35:11 [javac] DeferredCommand.addCommand(new Command() { build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/DynamicGridView.java:73: warning: [deprecation] getShortDateTimeFormat() in DateTimeFormat has been deprecated build 29-Apr-2015 08:35:11 [javac] private final static DateTimeFormat DATE_TIME_FORMAT = DateTimeFormat.getShortDateTimeFormat(); build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/DynamicGridView.java:152: warning: [deprecation] getShortDateFormat() in DateTimeFormat has been deprecated build 29-Apr-2015 08:35:11 [javac] Label dateuploaded = new Label(DateTimeFormat.getShortDateFormat().format(date)); build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/DynamicListView.java:67: warning: [deprecation] getShortDateTimeFormat() in DateTimeFormat has been deprecated build 29-Apr-2015 08:35:11 [javac] private final static DateTimeFormat DATE_TIME_FORMAT = DateTimeFormat.getShortDateTimeFormat(); build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/DynamicListView.java:136: warning: [deprecation] getMediumDateTimeFormat() in DateTimeFormat has been deprecated build 29-Apr-2015 08:35:11 [javac] informationPanel.setWidget(2, 0, new Label(DateTimeFormat.getMediumDateTimeFormat().format(date))); build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/view/TagDialogViewWSuggest.java:106: warning: [deprecation] DeferredCommand in com.google.gwt.user.client has been deprecated build 29-Apr-2015 08:35:11 [javac] DeferredCommand.addCommand(new Command() { build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/rest/RestServlet.java:599: warning: [deprecation] Date(String) in Date has been deprecated build 29-Apr-2015 08:35:11 [javac] Date d = new Date(request.getHeader("If-Modified-Since")); build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/rest/RssServlet.java:97: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:11 [javac] u.addPattern("s", Rdf.TYPE, Cet.DATASET); build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/AccessControl.java:92: warning: [deprecation] VIEW_ADMIN_PAGES in MMDB has been deprecated build 29-Apr-2015 08:35:11 [javac] return rbac.checkPermission(Resource.uriRef(personUri), MMDB.VIEW_ADMIN_PAGES); build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/ContextSetupListener.java:609: warning: [deprecation] addUser(String,String,String,String) in ContextAuthentication has been deprecated build 29-Apr-2015 08:35:11 [javac] userid = auth.addUser(username, email, fullname, password); build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/DatasourceBeanPreprocessor.java:125: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:11 [javac] uf.addPattern("s", Rdf.TYPE, Cet.DATASET); build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/PermissionResourceMap.java:63: warning: [deprecation] VIEW_ADMIN_PAGES in MMDB has been deprecated build 29-Apr-2015 08:35:11 [javac] map.put(Permission.VIEW_ADMIN_PAGES, MMDB.VIEW_ADMIN_PAGES); build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/PermissionResourceMap.java:64: warning: [deprecation] VIEW_MEMBER_PAGES in MMDB has been deprecated build 29-Apr-2015 08:35:11 [javac] map.put(Permission.VIEW_MEMBER_PAGES, MMDB.VIEW_MEMBER_PAGES); build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/RoleResourceMap.java:64: warning: [deprecation] ADMIN_ROLE in MMDB has been deprecated build 29-Apr-2015 08:35:11 [javac] toResource.put(Role.ADMIN, MMDB.ADMIN_ROLE); build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/RoleResourceMap.java:65: warning: [deprecation] REGULAR_MEMBER_ROLE in MMDB has been deprecated build 29-Apr-2015 08:35:11 [javac] toResource.put(Role.MEMBER, MMDB.REGULAR_MEMBER_ROLE); build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/RoleResourceMap.java:68: warning: [deprecation] ADMIN_ROLE in MMDB has been deprecated build 29-Apr-2015 08:35:11 [javac] toRole.put(MMDB.ADMIN_ROLE, Role.ADMIN); build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/RoleResourceMap.java:69: warning: [deprecation] REGULAR_MEMBER_ROLE in MMDB has been deprecated build 29-Apr-2015 08:35:11 [javac] toRole.put(MMDB.REGULAR_MEMBER_ROLE, Role.MEMBER); build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/TupeloStore.java:540: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:11 [javac] } else if (Cet.DATASET.equals(type)) { build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/TupeloStore.java:637: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:11 [javac] u.addPattern("descriptor", Rdf.TYPE, Cet.DATASET); build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/TupeloStore.java:661: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:11 [javac] u.addPattern("member", Rdf.TYPE, Cet.DATASET); build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/TupeloStore.java:945: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:11 [javac] u.addPattern("d", Rdf.TYPE, Cet.DATASET); build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/UploadBlob.java:408: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:11 [javac] t.addType(Cet.DATASET); build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/AnnotateResourceHandler.java:84: warning: [deprecation] getId() in AnnotateResource has been deprecated build 29-Apr-2015 08:35:11 [javac] String resource = arg0.getId(); build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GeoSearchHandler.java:89: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:11 [javac] u.addPattern("d", Rdf.TYPE, Cet.DATASET); build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GetCollectionHandler.java:289: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:11 [javac] u.addPattern("s", Rdf.TYPE, Cet.DATASET); build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GetCollectionHandler.java:329: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:11 [javac] if (Cet.DATASET.equals(row.get(1)) && !row.get(5).getString().equals(user)) { build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GetDatasetsByTagHandler.java:95: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:11 [javac] uf.addPattern("dataset", Rdf.TYPE, Cet.DATASET); build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GetDerivedFromHandler.java:92: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:11 [javac] u.addPattern("input", Rdf.TYPE, Cet.DATASET); build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GetRecentActivityHandler.java:98: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:11 [javac] uf.addPattern("dataset", Rdf.TYPE, Cet.DATASET); build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GetUsersHandler.java:110: warning: [deprecation] toLocaleString() in Date has been deprecated build 29-Apr-2015 08:35:11 [javac] user.lastlogin = cal.getTime().toLocaleString(); build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/ListQueryHandler.java:146: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:11 [javac] if (!row.get(1).equals(Cet.DATASET) && !row.get(1).equals(CollectionBeanUtil.COLLECTION_TYPE)) { build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:11 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/SystemInfoHandler.java:140: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:11 [javac] if (Cet.DATASET.equals(row.get(1))) { build 29-Apr-2015 08:35:11 [javac] ^ build 29-Apr-2015 08:35:12 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ItemServicesImpl.java:938: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:12 [javac] if (itemType.equals(Cet.DATASET)) { build 29-Apr-2015 08:35:12 [javac] ^ build 29-Apr-2015 08:35:12 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/CollectionsRestService.java:167: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:12 [javac] return addItemToCollection(id, item_id, Cet.DATASET, request); build 29-Apr-2015 08:35:12 [javac] ^ build 29-Apr-2015 08:35:12 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:310: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:12 [javac] return getTopLevelItems(Cet.DATASET, datasetBasics, userId); build 29-Apr-2015 08:35:12 [javac] ^ build 29-Apr-2015 08:35:12 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:365: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:12 [javac] ValidItem item = new ValidItem(itemId, Cet.DATASET, userId); build 29-Apr-2015 08:35:12 [javac] ^ build 29-Apr-2015 08:35:12 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:447: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:12 [javac] return markItemAsDeleted(id, Cet.DATASET, request); build 29-Apr-2015 08:35:12 [javac] ^ build 29-Apr-2015 08:35:12 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:462: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:12 [javac] return getItemTagsByIdAsJSON(id, Cet.DATASET, request); build 29-Apr-2015 08:35:12 [javac] ^ build 29-Apr-2015 08:35:12 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:477: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:12 [javac] return addTagsToItem(id, tags, Cet.DATASET, request); build 29-Apr-2015 08:35:12 [javac] ^ build 29-Apr-2015 08:35:12 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:492: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:12 [javac] return deleteTagsFromItem(id, tags, Cet.DATASET, request); build 29-Apr-2015 08:35:12 [javac] ^ build 29-Apr-2015 08:35:12 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:561: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:12 [javac] return getItemsByMetadata(pred, type, value, Cet.DATASET, request); build 29-Apr-2015 08:35:12 [javac] ^ build 29-Apr-2015 08:35:12 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:615: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:12 [javac] return getItemsThatAreGeoLayers(Cet.DATASET, null, request); build 29-Apr-2015 08:35:12 [javac] ^ build 29-Apr-2015 08:35:12 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java:631: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:12 [javac] return getItemsThatAreGeoFeatures(Cet.DATASET, null, request); build 29-Apr-2015 08:35:12 [javac] ^ build 29-Apr-2015 08:35:12 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/TagsRestService.java:105: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:12 [javac] return getMetadataByReverseRelationship((UriRef) TagEventBeanUtil.createTagUri(tag), Tags.TAGGED_WITH_TAG, datasetBasics, userId, Cet.DATASET); build 29-Apr-2015 08:35:12 [javac] ^ build 29-Apr-2015 08:35:12 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/TagsRestService.java:144: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:12 [javac] return getItemsThatAreGeoLayers(Cet.DATASET, (UriRef) TagEventBeanUtil.createTagUri(tagString), request); build 29-Apr-2015 08:35:12 [javac] ^ build 29-Apr-2015 08:35:12 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/TagsRestService.java:160: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:12 [javac] return getItemsThatAreGeoFeatures(Cet.DATASET, (UriRef) TagEventBeanUtil.createTagUri(tagString), request); build 29-Apr-2015 08:35:12 [javac] ^ build 29-Apr-2015 08:35:12 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/util/BeanFiller.java:116: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:12 [javac] t.addType(Cet.DATASET); build 29-Apr-2015 08:35:12 [javac] ^ build 29-Apr-2015 08:35:12 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/webdav/CollectionBeanResource.java:114: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:12 [javac] uf.addPattern("data", Rdf.TYPE, Cet.DATASET); //$NON-NLS-1$ build 29-Apr-2015 08:35:12 [javac] ^ build 29-Apr-2015 08:35:12 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/webdav/PersonBeanResource.java:99: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:12 [javac] uf.addPattern("data", Rdf.TYPE, Cet.DATASET); //$NON-NLS-1$ build 29-Apr-2015 08:35:12 [javac] ^ build 29-Apr-2015 08:35:12 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/webdav/TagBeanResource.java:99: warning: [deprecation] DATASET in Cet has been deprecated build 29-Apr-2015 08:35:12 [javac] uf.addPattern("data", Rdf.TYPE, Cet.DATASET); //$NON-NLS-1$ build 29-Apr-2015 08:35:12 [javac] ^ build 29-Apr-2015 08:35:12 [javac] Note: Some input files use unchecked or unsafe operations. build 29-Apr-2015 08:35:12 [javac] Note: Recompile with -Xlint:unchecked for details. build 29-Apr-2015 08:35:12 [javac] 77 warnings build 29-Apr-2015 08:35:12 build 29-Apr-2015 08:35:12 gwtc: build 29-Apr-2015 08:35:13 [java] Compiling module edu.illinois.ncsa.mmdb.web.MMDB build 29-Apr-2015 08:36:03 [java] Compiling 6 permutations build 29-Apr-2015 08:36:03 [java] Compiling permutation 0... build 29-Apr-2015 08:36:18 [java] Compiling permutation 1... build 29-Apr-2015 08:36:32 [java] Compiling permutation 2... build 29-Apr-2015 08:36:44 [java] Compiling permutation 3... build 29-Apr-2015 08:36:55 [java] Compiling permutation 4... build 29-Apr-2015 08:37:07 [java] Compiling permutation 5... build 29-Apr-2015 08:37:17 [java] Compile of permutations succeeded build 29-Apr-2015 08:37:18 [java] Linking into /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/mmdb build 29-Apr-2015 08:37:18 [java] Link succeeded build 29-Apr-2015 08:37:18 [java] Compilation succeeded -- 125.522s build 29-Apr-2015 08:37:20 [java] Compiling module edu.illinois.ncsa.mmdb.web.Embed build 29-Apr-2015 08:37:51 [java] Compiling 6 permutations build 29-Apr-2015 08:37:51 [java] Compiling permutation 0... build 29-Apr-2015 08:38:00 [java] Compiling permutation 1... build 29-Apr-2015 08:38:07 [java] Compiling permutation 2... build 29-Apr-2015 08:38:12 [java] Compiling permutation 3... build 29-Apr-2015 08:38:18 [java] Compiling permutation 4... build 29-Apr-2015 08:38:25 [java] Compiling permutation 5... build 29-Apr-2015 08:38:30 [java] Compile of permutations succeeded build 29-Apr-2015 08:38:31 [java] Linking into /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/embed build 29-Apr-2015 08:38:31 [java] Link succeeded build 29-Apr-2015 08:38:31 [java] Compilation succeeded -- 71.076s build 29-Apr-2015 08:38:31 build 29-Apr-2015 08:38:31 resources: build 29-Apr-2015 08:38:31 [copy] Copying 7 files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes build 29-Apr-2015 08:38:31 [copy] Copying 1 file to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes build 29-Apr-2015 08:38:31 build 29-Apr-2015 08:38:31 war: build 29-Apr-2015 08:38:31 [zip] Building zip: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/medici.war build 29-Apr-2015 08:38:38 build 29-Apr-2015 08:38:38 bamboo: build 29-Apr-2015 08:38:38 build 29-Apr-2015 08:38:38 BUILD SUCCESSFUL build 29-Apr-2015 08:38:38 Total time: 3 minutes 38 seconds simple 29-Apr-2015 08:38:38 Finished task 'Web App' with result: Success simple 29-Apr-2015 08:38:38 Starting task 'Geo Browse' of type 'com.atlassian.bamboo.plugins.ant:task.builder.ant' command 29-Apr-2015 08:38:38 Beginning to execute external process for build 'MMDB - Medici 1 GWT - default #96 (MMDB-MEDICI-JOB1-96)'\n ... running command line: \n/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 clean war\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse\n ... using extra environment variables: \nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_05\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nJAVA_HOME=/home/bamboo/jdk1.7.0_60\nbamboo_repository_18841602_previous_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_planRepository_type=git\nbamboo_shortPlanName=Medici 1 GWT\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_planKey=MMDB-MEDICI\nbamboo_repository_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_1_branchName=master\nbamboo_repository_18841602_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_repository_34635787_previous_revision_number=a972aa71ec4a1b06e6036e3710943a160cfa7ba8\nbamboo_shortPlanKey=MEDICI\nbamboo_shortJobKey=JOB1\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_planRepository_1_branch=master\nbamboo_repository_revision_number=d02963d12e2b853e399b1a5cac9fb4fda7d31385\nbamboo_repository_18841602_name=cet\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.2.1\nbamboo_planRepository_2_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planName=MMDB - Medici 1 GWT\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-96\nbamboo_capability_system_jdk_JDK_1_7_0_60=/home/bamboo/jdk1.7.0_60\nbamboo_buildResultKey=MMDB-MEDICI-JOB1-96\nbamboo_planRepository_revision=d02963d12e2b853e399b1a5cac9fb4fda7d31385\nbamboo_repository_git_username=\nbamboo_buildKey=MMDB-MEDICI-JOB1\nbamboo_repository_previous_revision_number=a972aa71ec4a1b06e6036e3710943a160cfa7ba8\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_34635787_git_branch=master\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1\nbamboo_repository_18841602_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_repository_18841602_git_username=\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_planRepository_2_previousRevision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_buildPlanName=MMDB - Medici 1 GWT - default\nbamboo_repository_name=cet\nbamboo_planRepository_2_revision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_repository_18841602_git_branch=master\nbamboo_repository_34635787_git_username=\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-96\nbamboo_repository_34635787_revision_number=d02963d12e2b853e399b1a5cac9fb4fda7d31385\nbamboo_planRepository_1_revision=d02963d12e2b853e399b1a5cac9fb4fda7d31385\nbamboo_repository_git_branch=master\nbamboo_planRepository_2_branch=master\nbamboo_planRepository_1_previousRevision=a972aa71ec4a1b06e6036e3710943a160cfa7ba8\nbamboo_planRepository_1_type=git\nbamboo_repository_18841602_branch_name=master\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_1_name=medici-gwt-web\nbamboo_build_commandline_com_atlassian_bamboo_plugins_ant_task_builder_ant_2=/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 bamboo -Dbamboo.version="master#96"\nbamboo_planRepository_branch=master\nbamboo_planRepository_2_branchName=master\nbamboo_repository_34635787_name=medici-gwt-web\nbamboo_planRepository_username=\nbamboo_planRepository_branchName=master\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.7.0_60\nbamboo_capability_system_os=linux\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_repository_34635787_branch_name=master\nbamboo_shortJobName=default\nbamboo_repository_branch_name=master\nbamboo_agentId=57573377\nbamboo_planRepository_previousRevision=a972aa71ec4a1b06e6036e3710943a160cfa7ba8\nbamboo_planRepository_1_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_2_type=git\nbamboo_repository_34635787_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nANT_HOME=/home/bamboo/apache-ant-1.9.4\nbamboo_planRepository_2_name=cet\nbamboo_planRepository_1_username=\nbamboo_planRepository_2_username=\nbamboo_planRepository_name=medici-gwt-web\nbamboo_buildNumber=96\nbamboo_capability_system_hostname=buildserver-2\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_buildTimeStamp=2015-04-29T08:34:12.545-05:00\nPATH=/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/node-v0.10.28/bin:/usr/bin:/bin\n build 29-Apr-2015 08:38:38 Buildfile: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse/build.xml build 29-Apr-2015 08:38:39 build 29-Apr-2015 08:38:39 clean: build 29-Apr-2015 08:38:39 build 29-Apr-2015 08:38:39 clean: build 29-Apr-2015 08:38:39 build 29-Apr-2015 08:38:39 resources: build 29-Apr-2015 08:38:39 [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse/war/WEB-INF/classes build 29-Apr-2015 08:38:39 [copy] Copying 3 files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse/war/WEB-INF/classes build 29-Apr-2015 08:38:39 build 29-Apr-2015 08:38:39 compile: build 29-Apr-2015 08:38:39 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse/build.xml:68: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds build 29-Apr-2015 08:38:39 [javac] Compiling 24 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse/war/WEB-INF/classes build 29-Apr-2015 08:38:40 [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.6 build 29-Apr-2015 08:38:42 [javac] 1 warning build 29-Apr-2015 08:38:42 build 29-Apr-2015 08:38:42 gwtc: build 29-Apr-2015 08:38:44 [java] Compiling module edu.illinois.ncsa.medici.geowebapp.Geo_webapp build 29-Apr-2015 08:39:10 [java] Compiling 6 permutations build 29-Apr-2015 08:39:10 [java] Compiling permutation 0... build 29-Apr-2015 08:39:15 [java] Compiling permutation 1... build 29-Apr-2015 08:39:20 [java] Compiling permutation 2... build 29-Apr-2015 08:39:23 [java] Compiling permutation 3... build 29-Apr-2015 08:39:26 [java] Compiling permutation 4... build 29-Apr-2015 08:39:30 [java] Compiling permutation 5... build 29-Apr-2015 08:39:33 [java] Compile of permutations succeeded build 29-Apr-2015 08:39:34 [java] Linking into /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse/war/geobrowse build 29-Apr-2015 08:39:34 [java] Link succeeded build 29-Apr-2015 08:39:34 [java] Compilation succeeded -- 49.497s build 29-Apr-2015 08:39:34 build 29-Apr-2015 08:39:34 war: build 29-Apr-2015 08:39:34 [zip] Building zip: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/geobrowse/geobrowse.war build 29-Apr-2015 08:39:36 build 29-Apr-2015 08:39:36 BUILD SUCCESSFUL build 29-Apr-2015 08:39:36 Total time: 57 seconds simple 29-Apr-2015 08:39:36 Finished task 'Geo Browse' with result: Success simple 29-Apr-2015 08:39:36 Starting task 'Dashboard' of type 'com.atlassian.bamboo.plugins.ant:task.builder.ant' command 29-Apr-2015 08:39:36 Beginning to execute external process for build 'MMDB - Medici 1 GWT - default #96 (MMDB-MEDICI-JOB1-96)'\n ... running command line: \n/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 clean war\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/dashboard\n ... using extra environment variables: \nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_05\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nJAVA_HOME=/home/bamboo/jdk1.7.0_60\nbamboo_repository_18841602_previous_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_planRepository_type=git\nbamboo_shortPlanName=Medici 1 GWT\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_planKey=MMDB-MEDICI\nbamboo_repository_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_1_branchName=master\nbamboo_repository_18841602_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_repository_34635787_previous_revision_number=a972aa71ec4a1b06e6036e3710943a160cfa7ba8\nbamboo_shortPlanKey=MEDICI\nbamboo_shortJobKey=JOB1\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_planRepository_1_branch=master\nbamboo_repository_revision_number=d02963d12e2b853e399b1a5cac9fb4fda7d31385\nbamboo_repository_18841602_name=cet\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.2.1\nbamboo_planRepository_2_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planName=MMDB - Medici 1 GWT\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-96\nbamboo_capability_system_jdk_JDK_1_7_0_60=/home/bamboo/jdk1.7.0_60\nbamboo_buildResultKey=MMDB-MEDICI-JOB1-96\nbamboo_planRepository_revision=d02963d12e2b853e399b1a5cac9fb4fda7d31385\nbamboo_repository_git_username=\nbamboo_buildKey=MMDB-MEDICI-JOB1\nbamboo_repository_previous_revision_number=a972aa71ec4a1b06e6036e3710943a160cfa7ba8\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_34635787_git_branch=master\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1\nbamboo_repository_18841602_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_repository_18841602_git_username=\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_planRepository_2_previousRevision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_buildPlanName=MMDB - Medici 1 GWT - default\nbamboo_repository_name=cet\nbamboo_planRepository_2_revision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_repository_18841602_git_branch=master\nbamboo_repository_34635787_git_username=\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-96\nbamboo_repository_34635787_revision_number=d02963d12e2b853e399b1a5cac9fb4fda7d31385\nbamboo_planRepository_1_revision=d02963d12e2b853e399b1a5cac9fb4fda7d31385\nbamboo_repository_git_branch=master\nbamboo_planRepository_2_branch=master\nbamboo_planRepository_1_previousRevision=a972aa71ec4a1b06e6036e3710943a160cfa7ba8\nbamboo_planRepository_1_type=git\nbamboo_repository_18841602_branch_name=master\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_1_name=medici-gwt-web\nbamboo_build_commandline_com_atlassian_bamboo_plugins_ant_task_builder_ant_2=/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 bamboo -Dbamboo.version="master#96"\nbamboo_planRepository_branch=master\nbamboo_planRepository_2_branchName=master\nbamboo_repository_34635787_name=medici-gwt-web\nbamboo_planRepository_username=\nbamboo_planRepository_branchName=master\nbamboo_build_commandline_com_atlassian_bamboo_plugins_ant_task_builder_ant_4=/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 clean war\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.7.0_60\nbamboo_capability_system_os=linux\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_repository_34635787_branch_name=master\nbamboo_shortJobName=default\nbamboo_repository_branch_name=master\nbamboo_agentId=57573377\nbamboo_planRepository_previousRevision=a972aa71ec4a1b06e6036e3710943a160cfa7ba8\nbamboo_planRepository_1_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_2_type=git\nbamboo_repository_34635787_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nANT_HOME=/home/bamboo/apache-ant-1.9.4\nbamboo_planRepository_2_name=cet\nbamboo_planRepository_1_username=\nbamboo_planRepository_2_username=\nbamboo_planRepository_name=medici-gwt-web\nbamboo_buildNumber=96\nbamboo_capability_system_hostname=buildserver-2\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_buildTimeStamp=2015-04-29T08:34:12.545-05:00\nPATH=/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/node-v0.10.28/bin:/usr/bin:/bin\n build 29-Apr-2015 08:39:37 Buildfile: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/dashboard/build.xml build 29-Apr-2015 08:39:37 build 29-Apr-2015 08:39:37 clean: build 29-Apr-2015 08:39:37 build 29-Apr-2015 08:39:37 clean: build 29-Apr-2015 08:39:37 build 29-Apr-2015 08:39:37 resources: build 29-Apr-2015 08:39:37 [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/dashboard/WebContent/WEB-INF/classes build 29-Apr-2015 08:39:37 [copy] Copying 3 files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/dashboard/WebContent/WEB-INF/classes build 29-Apr-2015 08:39:37 build 29-Apr-2015 08:39:37 compile: build 29-Apr-2015 08:39:37 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/dashboard/build.xml:77: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds build 29-Apr-2015 08:39:37 [javac] Compiling 3 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/dashboard/WebContent/WEB-INF/classes build 29-Apr-2015 08:39:38 [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5 build 29-Apr-2015 08:39:39 [javac] 1 warning build 29-Apr-2015 08:39:39 build 29-Apr-2015 08:39:39 war: build 29-Apr-2015 08:39:39 [zip] Building zip: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/dashboard/dashboard.war build 29-Apr-2015 08:39:39 build 29-Apr-2015 08:39:39 BUILD SUCCESSFUL build 29-Apr-2015 08:39:39 Total time: 2 seconds simple 29-Apr-2015 08:39:39 Finished task 'Dashboard' with result: Success simple 29-Apr-2015 08:39:39 Starting task 'Discovery' of type 'com.atlassian.bamboo.plugins.ant:task.builder.ant' command 29-Apr-2015 08:39:40 Beginning to execute external process for build 'MMDB - Medici 1 GWT - default #96 (MMDB-MEDICI-JOB1-96)'\n ... running command line: \n/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 clean war\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery\n ... using extra environment variables: \nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_05\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nJAVA_HOME=/home/bamboo/jdk1.7.0_60\nbamboo_repository_18841602_previous_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_planRepository_type=git\nbamboo_shortPlanName=Medici 1 GWT\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_planKey=MMDB-MEDICI\nbamboo_repository_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_1_branchName=master\nbamboo_repository_18841602_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_repository_34635787_previous_revision_number=a972aa71ec4a1b06e6036e3710943a160cfa7ba8\nbamboo_shortPlanKey=MEDICI\nbamboo_shortJobKey=JOB1\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_planRepository_1_branch=master\nbamboo_repository_revision_number=d02963d12e2b853e399b1a5cac9fb4fda7d31385\nbamboo_repository_18841602_name=cet\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.2.1\nbamboo_planRepository_2_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planName=MMDB - Medici 1 GWT\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-96\nbamboo_capability_system_jdk_JDK_1_7_0_60=/home/bamboo/jdk1.7.0_60\nbamboo_buildResultKey=MMDB-MEDICI-JOB1-96\nbamboo_planRepository_revision=d02963d12e2b853e399b1a5cac9fb4fda7d31385\nbamboo_repository_git_username=\nbamboo_buildKey=MMDB-MEDICI-JOB1\nbamboo_repository_previous_revision_number=a972aa71ec4a1b06e6036e3710943a160cfa7ba8\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_34635787_git_branch=master\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1\nbamboo_repository_18841602_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_repository_18841602_git_username=\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_planRepository_2_previousRevision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_buildPlanName=MMDB - Medici 1 GWT - default\nbamboo_repository_name=cet\nbamboo_planRepository_2_revision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_repository_18841602_git_branch=master\nbamboo_repository_34635787_git_username=\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI-JOB1-96\nbamboo_repository_34635787_revision_number=d02963d12e2b853e399b1a5cac9fb4fda7d31385\nbamboo_planRepository_1_revision=d02963d12e2b853e399b1a5cac9fb4fda7d31385\nbamboo_repository_git_branch=master\nbamboo_planRepository_2_branch=master\nbamboo_planRepository_1_previousRevision=a972aa71ec4a1b06e6036e3710943a160cfa7ba8\nbamboo_planRepository_1_type=git\nbamboo_repository_18841602_branch_name=master\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_1_name=medici-gwt-web\nbamboo_build_commandline_com_atlassian_bamboo_plugins_ant_task_builder_ant_2=/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 bamboo -Dbamboo.version="master#96"\nbamboo_planRepository_branch=master\nbamboo_planRepository_2_branchName=master\nbamboo_repository_34635787_name=medici-gwt-web\nbamboo_planRepository_username=\nbamboo_build_commandline_com_atlassian_bamboo_plugins_ant_task_builder_ant_5=/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 clean war\nbamboo_planRepository_branchName=master\nbamboo_build_commandline_com_atlassian_bamboo_plugins_ant_task_builder_ant_4=/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI-JOB1 clean war\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.7.0_60\nbamboo_capability_system_os=linux\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_repository_34635787_branch_name=master\nbamboo_shortJobName=default\nbamboo_repository_branch_name=master\nbamboo_agentId=57573377\nbamboo_planRepository_previousRevision=a972aa71ec4a1b06e6036e3710943a160cfa7ba8\nbamboo_planRepository_1_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_2_type=git\nbamboo_repository_34635787_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nANT_HOME=/home/bamboo/apache-ant-1.9.4\nbamboo_planRepository_2_name=cet\nbamboo_planRepository_1_username=\nbamboo_planRepository_2_username=\nbamboo_planRepository_name=medici-gwt-web\nbamboo_buildNumber=96\nbamboo_capability_system_hostname=buildserver-2\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_buildTimeStamp=2015-04-29T08:34:12.545-05:00\nPATH=/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/node-v0.10.28/bin:/usr/bin:/bin\n build 29-Apr-2015 08:39:40 Buildfile: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery/build.xml build 29-Apr-2015 08:39:41 build 29-Apr-2015 08:39:41 clean: build 29-Apr-2015 08:39:41 build 29-Apr-2015 08:39:41 clean: build 29-Apr-2015 08:39:41 build 29-Apr-2015 08:39:41 resources: build 29-Apr-2015 08:39:41 [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery/WebContent/WEB-INF/classes build 29-Apr-2015 08:39:41 [copy] Copying 3 files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery/WebContent/WEB-INF/classes build 29-Apr-2015 08:39:41 build 29-Apr-2015 08:39:41 compile: build 29-Apr-2015 08:39:41 [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery/build.xml:65: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds build 29-Apr-2015 08:39:41 [javac] Compiling 8 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery/WebContent/WEB-INF/classes build 29-Apr-2015 08:39:41 [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5 build 29-Apr-2015 08:39:42 [javac] 1 warning build 29-Apr-2015 08:39:42 [javac] Creating empty /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery/WebContent/WEB-INF/classes/org/sead/acr/discovery/package-info.class build 29-Apr-2015 08:39:42 build 29-Apr-2015 08:39:42 war: build 29-Apr-2015 08:39:42 [zip] Building zip: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI-JOB1/mmdb-gwt/discovery/discovery.war build 29-Apr-2015 08:39:42 build 29-Apr-2015 08:39:42 BUILD SUCCESSFUL build 29-Apr-2015 08:39:42 Total time: 2 seconds simple 29-Apr-2015 08:39:42 Finished task 'Discovery' with result: Success simple 29-Apr-2015 08:39:42 Running post build plugin 'Artifact Copier' simple 29-Apr-2015 08:39:42 Publishing an artifact: medici.war simple 29-Apr-2015 08:39:43 Finished publishing of artifact Job artifact: [medici.war], pattern: [medici.war] anchored at: [mmdb-gwt/edu.illinois.ncsa.mmdb.web] in 0s simple 29-Apr-2015 08:39:43 Publishing an artifact: geobrowse.war simple 29-Apr-2015 08:39:43 Finished publishing of artifact Job artifact: [geobrowse.war], pattern: [geobrowse.war] anchored at: [mmdb-gwt/geobrowse] in 0s simple 29-Apr-2015 08:39:43 Publishing an artifact: dashboard.war simple 29-Apr-2015 08:39:43 Finished publishing of artifact Job artifact: [dashboard.war], pattern: [dashboard.war] anchored at: [mmdb-gwt/dashboard] in 0s simple 29-Apr-2015 08:39:43 Publishing an artifact: discovery.war simple 29-Apr-2015 08:39:43 Finished publishing of artifact Job artifact: [discovery.war], pattern: [discovery.war] anchored at: [mmdb-gwt/discovery] in 0s simple 29-Apr-2015 08:39:43 Running post build plugin 'npm Cache Cleanup' simple 29-Apr-2015 08:39:43 Running post build plugin 'NCover Results Collector' simple 29-Apr-2015 08:39:43 Running post build plugin 'Clover Results Collector' simple 29-Apr-2015 08:39:43 Running post build plugin 'Docker Container Cleanup' simple 29-Apr-2015 08:39:43 Finalising the build... simple 29-Apr-2015 08:39:43 Stopping timer. simple 29-Apr-2015 08:39:43 Build MMDB-MEDICI-JOB1-96 completed. simple 29-Apr-2015 08:39:43 Running on server: post build plugin 'Clover Delta Calculator' simple 29-Apr-2015 08:39:43 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 29-Apr-2015 08:39:43 Running on server: post build plugin 'NCover Results Collector' simple 29-Apr-2015 08:39:43 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 29-Apr-2015 08:39:43 All post build plugins have finished simple 29-Apr-2015 08:39:43 Generating build results summary... simple 29-Apr-2015 08:39:43 Saving build results to disk... simple 29-Apr-2015 08:39:44 Indexing build results... simple 29-Apr-2015 08:39:44 Finished building MMDB-MEDICI-JOB1-96.