simple	08-Sep-2016 13:13:26	Build MMDB - Medici 1 GWT - sead - default #82 (MMDB-MEDICI70-JOB1-82) started building on agent buildserver-1.ncsa.illinois.edu
simple	08-Sep-2016 13:13:26	Remote Agent
simple	08-Sep-2016 13:13:26	Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1
simple	08-Sep-2016 13:13:26	Executing build MMDB - Medici 1 GWT - sead - default #82 (MMDB-MEDICI70-JOB1-82)
simple	08-Sep-2016 13:13:26	Starting task 'Source Code Checkout' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
simple	08-Sep-2016 13:13:26	Build always requires a clean checkout
simple	08-Sep-2016 13:13:26	Cleaning build directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt'
simple	08-Sep-2016 13:13:26	Build always requires a clean checkout
simple	08-Sep-2016 13:13:26	Cleaning build directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet'
simple	08-Sep-2016 13:13:26	Updating source code to revision: a46e87fb3b120cf72e1b055021c1e2ff5a4703a3
simple	08-Sep-2016 13:13:26	Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/.git'.
simple	08-Sep-2016 13:13:26	Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/.git/
simple	08-Sep-2016 13:13:27	Fetching 'refs/heads/sead' from 'https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git'. Will try to do a shallow fetch.
simple	08-Sep-2016 13:13:32	From https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web
simple	08-Sep-2016 13:13:32	 * [new branch]      sead       -> sead
simple	08-Sep-2016 13:13:32	Checking out revision a46e87fb3b120cf72e1b055021c1e2ff5a4703a3.
simple	08-Sep-2016 13:13:33	Switched to branch 'sead'
simple	08-Sep-2016 13:13:34	Updated source code to revision: a46e87fb3b120cf72e1b055021c1e2ff5a4703a3
simple	08-Sep-2016 13:13:34	Updating source code to revision: 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
simple	08-Sep-2016 13:13:34	Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/.git'.
simple	08-Sep-2016 13:13:34	Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/.git/
simple	08-Sep-2016 13:13:35	Fetching 'refs/heads/master' from 'https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git'. Will try to do a shallow fetch.
simple	08-Sep-2016 13:13:42	From https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet
simple	08-Sep-2016 13:13:42	 * [new branch]      master     -> master
simple	08-Sep-2016 13:13:42	Checking out revision 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e.
simple	08-Sep-2016 13:13:47	Already on 'master'
simple	08-Sep-2016 13:13:47	Updated source code to revision: 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
simple	08-Sep-2016 13:13:47	Finished task 'Source Code Checkout' with result: Success
simple	08-Sep-2016 13:13:47	Running pre-build action: VCS Version Collector
command	08-Sep-2016 13:13:47	Substituting variable: ${bamboo.repository.branch.name} with sead
command	08-Sep-2016 13:13:47	Substituting variable: ${bamboo.buildNumber} with 82
simple	08-Sep-2016 13:13:47	Starting task 'Web App' of type 'com.atlassian.bamboo.plugins.ant:task.builder.ant'
command	08-Sep-2016 13:13:47	Beginning to execute external process for build 'MMDB - Medici 1 GWT - sead - default #82 (MMDB-MEDICI70-JOB1-82)'\n ... running command line: \n/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI70-JOB1 bamboo -Dbamboo.version="sead#82"\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web\n ... using extra environment variables: \nbamboo_planRepository_1_branch=sead\nbamboo_planRepository_2_branch=master\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_repository_revision_number=a46e87fb3b120cf72e1b055021c1e2ff5a4703a3\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI70-JOB1-82\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_planRepository_1_name=medici-gwt-web\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1\nbamboo_buildKey=MMDB-MEDICI70-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=sead\nbamboo_planRepository_2_username=\nbamboo_planRepository_name=medici-gwt-web\nbamboo_buildNumber=82\nbamboo_shortJobName=default\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI70-JOB1-82\nbamboo_repository_18841602_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git\nbamboo_planRepository_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_repository_71958567_revision_number=a46e87fb3b120cf72e1b055021c1e2ff5a4703a3\nbamboo_repository_18841602_git_username=\nbamboo_agentId=108560385\nbamboo_planName=MMDB - Medici 1 GWT - sead\nbamboo_repository_18841602_branch_name=master\nbamboo_shortPlanKey=MEDICI70\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_shortJobKey=JOB1\nbamboo_planRepository_2_name=cet\nbamboo_planRepository_revision=a46e87fb3b120cf72e1b055021c1e2ff5a4703a3\nbamboo_repository_71958567_branch_name=sead\nbamboo_repository_previous_revision_number=61aded5b9ba788834302301e7c423a24b9abc10f\nbamboo_buildTimeStamp=2016-09-08T13:13:25.885-05:00\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_planRepository_previousRevision=61aded5b9ba788834302301e7c423a24b9abc10f\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_repository_71958567_git_username=\nbamboo_buildResultKey=MMDB-MEDICI70-JOB1-82\nbamboo_repository_git_branch=sead\nbamboo_repository_branch_name=sead\nbamboo_buildPlanName=MMDB - Medici 1 GWT - sead - default\nbamboo_repository_18841602_name=cet\nbamboo_planRepository_1_revision=a46e87fb3b120cf72e1b055021c1e2ff5a4703a3\nbamboo_repository_18841602_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_repository_name=cet\nJAVA_HOME=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_2_previousRevision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_repository_71958567_name=medici-gwt-web\nANT_HOME=/home/bamboo/apache-ant-1.9.4\nbamboo_planRepository_branch=sead\nbamboo_repository_18841602_previous_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_planRepository_2_revision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_planRepository_1_previousRevision=61aded5b9ba788834302301e7c423a24b9abc10f\nbamboo_repository_git_username=\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=git\nbamboo_planRepository_branchName=sead\nbamboo_repository_71958567_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_capability_system_hostname=buildserver-1\nbamboo_planRepository_2_type=git\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_repository_71958567_git_branch=sead\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_planRepository_2_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git\nbamboo_planRepository_type=git\nbamboo_planRepository_1_username=\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_repository_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_2_branchName=master\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1\nbamboo_planKey=MMDB-MEDICI70\nbamboo_repository_18841602_git_branch=master\nbamboo_planRepository_1_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_1_branchName=sead\nbamboo_repository_71958567_previous_revision_number=61aded5b9ba788834302301e7c423a24b9abc10f\nPATH=/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/jdk1.8.0_66/bin:/home/bamboo/node-v0.10.28/bin:/usr/bin:/bin\n
build	08-Sep-2016 13:13:49	Buildfile: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml
build	08-Sep-2016 13:13:50	
build	08-Sep-2016 13:13:50	cetbean:
build	08-Sep-2016 13:13:50	    [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
build	08-Sep-2016 13:13:50	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:85: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
build	08-Sep-2016 13:13:51	    [javac] Compiling 65 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
build	08-Sep-2016 13:13:51	    [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5
build	08-Sep-2016 13:13:53	    [javac] 1 warning
build	08-Sep-2016 13:13:54	      [jar] Building jar: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/lib/cet-bean.jar
build	08-Sep-2016 13:13:54	   [delete] Deleting directory /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
build	08-Sep-2016 13:13:54	    [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
build	08-Sep-2016 13:13:54	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:100: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
build	08-Sep-2016 13:13:54	    [javac] Compiling 97 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
build	08-Sep-2016 13:13:54	    [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5
build	08-Sep-2016 13:13:55	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:48: warning: BASE64Encoder is internal proprietary API and may be removed in a future release
build	08-Sep-2016 13:13:55	    [javac] import sun.misc.BASE64Encoder;
build	08-Sep-2016 13:13:55	    [javac]                ^
build	08-Sep-2016 13:13:56	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/TagEventBeanUtil.java:72: warning: [deprecation] encode(String) in URLEncoder has been deprecated
build	08-Sep-2016 13:13:56	    [javac]         return Resource.uriRef("tag:cet.ncsa.uiuc.edu,2008:/tag#" + URLEncoder.encode(tag)); //$NON-NLS-1$
build	08-Sep-2016 13:13:56	    [javac]                                                                               ^
build	08-Sep-2016 13:13:56	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/VisualizationBeanUtil.java:73: warning: [deprecation] clone(T,PersonBean) in TupeloBeanUtil has been deprecated
build	08-Sep-2016 13:13:56	    [javac]     public VisualizationBean clone(VisualizationBean bean, PersonBean creator)
build	08-Sep-2016 13:13:56	    [javac]                              ^
build	08-Sep-2016 13:13:56	    [javac]   where T is a type-variable:
build	08-Sep-2016 13:13:56	    [javac]     T extends CETBean declared in class TupeloBeanUtil
build	08-Sep-2016 13:13:56	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/VisualizationBeanUtil.java:83: warning: [deprecation] clone(ConfigurationBean,PersonBean) in ConfigurationBeanUtil has been deprecated
build	08-Sep-2016 13:13:56	    [javac]             ConfigurationBean configuration = cbu.clone(bean.getConfiguration(), creator);
build	08-Sep-2016 13:13:56	    [javac]                                                  ^
build	08-Sep-2016 13:13:57	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:442: warning: [deprecation] ADMIN_ROLE in MMDB has been deprecated
build	08-Sep-2016 13:13:57	    [javac]             if (!t.getObject().equals(MMDB.ADMIN_ROLE) && !t.getObject().equals(MMDB.REGULAR_MEMBER_ROLE)) {
build	08-Sep-2016 13:13:57	    [javac]                                           ^
build	08-Sep-2016 13:13:57	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:442: warning: [deprecation] REGULAR_MEMBER_ROLE in MMDB has been deprecated
build	08-Sep-2016 13:13:57	    [javac]             if (!t.getObject().equals(MMDB.ADMIN_ROLE) && !t.getObject().equals(MMDB.REGULAR_MEMBER_ROLE)) {
build	08-Sep-2016 13:13:57	    [javac]                                                                                     ^
build	08-Sep-2016 13:13:57	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:452: warning: [deprecation] ADMIN_ROLE in MMDB has been deprecated
build	08-Sep-2016 13:13:57	    [javac]         createRole(MMDB.ADMIN_ROLE, "Administrator");
build	08-Sep-2016 13:13:57	    [javac]                        ^
build	08-Sep-2016 13:13:57	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:453: warning: [deprecation] REGULAR_MEMBER_ROLE in MMDB has been deprecated
build	08-Sep-2016 13:13:57	    [javac]         createRole(MMDB.REGULAR_MEMBER_ROLE, "Member");
build	08-Sep-2016 13:13:57	    [javac]                        ^
build	08-Sep-2016 13:13:57	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:78: warning: BASE64Encoder is internal proprietary API and may be removed in a future release
build	08-Sep-2016 13:13:57	    [javac]         BASE64Encoder encoder = new BASE64Encoder();
build	08-Sep-2016 13:13:57	    [javac]         ^
build	08-Sep-2016 13:13:57	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:78: warning: BASE64Encoder is internal proprietary API and may be removed in a future release
build	08-Sep-2016 13:13:57	    [javac]         BASE64Encoder encoder = new BASE64Encoder();
build	08-Sep-2016 13:13:57	    [javac]                                     ^
build	08-Sep-2016 13:13:57	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:28: warning: [deprecation] Rdf in Vocabulary has been deprecated
build	08-Sep-2016 13:13:57	    [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.PARAMETER)); //$NON-NLS-1$
build	08-Sep-2016 13:13:57	    [javac]                                                     ^
build	08-Sep-2016 13:13:57	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:40: warning: [deprecation] Rdf in Vocabulary has been deprecated
build	08-Sep-2016 13:13:57	    [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.PARAMETER)); //$NON-NLS-1$
build	08-Sep-2016 13:13:57	    [javac]                                                     ^
build	08-Sep-2016 13:13:57	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:58: warning: [deprecation] Rdf in Vocabulary has been deprecated
build	08-Sep-2016 13:13:57	    [javac]         uf.addPattern(new Pattern("input", Vocabulary.Rdf.TYPE, Cyberintegrator.DATASET)); //$NON-NLS-1$
build	08-Sep-2016 13:13:57	    [javac]                                                      ^
build	08-Sep-2016 13:13:57	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:82: warning: [deprecation] Rdf in Vocabulary has been deprecated
build	08-Sep-2016 13:13:57	    [javac]         uf.addPattern(new Pattern("output", Vocabulary.Rdf.TYPE, Cyberintegrator.DATASET)); //$NON-NLS-1$
build	08-Sep-2016 13:13:57	    [javac]                                                       ^
build	08-Sep-2016 13:13:57	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowToolDataDAO.java:26: warning: [deprecation] Rdf in Vocabulary has been deprecated
build	08-Sep-2016 13:13:57	    [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.TOOL_DATA)); //$NON-NLS-1$
build	08-Sep-2016 13:13:57	    [javac]                                                     ^
build	08-Sep-2016 13:13:57	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowToolDataDAO.java:41: warning: [deprecation] Rdf in Vocabulary has been deprecated
build	08-Sep-2016 13:13:57	    [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.TOOL_DATA)); //$NON-NLS-1$
build	08-Sep-2016 13:13:57	    [javac]                                                     ^
build	08-Sep-2016 13:13:57	    [javac] 17 warnings
build	08-Sep-2016 13:13:57	      [jar] Building jar: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/lib/cet-bean-tupelo.jar
build	08-Sep-2016 13:13:57	   [delete] Deleting directory /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
build	08-Sep-2016 13:13:57	
build	08-Sep-2016 13:13:57	updateversion:
build	08-Sep-2016 13:13:57	
build	08-Sep-2016 13:13:57	clean:
build	08-Sep-2016 13:13:57	
build	08-Sep-2016 13:13:57	compile:
build	08-Sep-2016 13:13:57	    [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
build	08-Sep-2016 13:13:57	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:126: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
build	08-Sep-2016 13:13:58	    [javac] Compiling 591 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
build	08-Sep-2016 13:14:05	    [javac] Note: Some input files use unchecked or unsafe operations.
build	08-Sep-2016 13:14:05	    [javac] Note: Recompile with -Xlint:unchecked for details.
build	08-Sep-2016 13:14:05	
build	08-Sep-2016 13:14:05	gwtc:
build	08-Sep-2016 13:14:07	     [java] Compiling module edu.illinois.ncsa.mmdb.web.MMDB
build	08-Sep-2016 13:14:26	     [java]    Validating newly compiled units
build	08-Sep-2016 13:14:26	     [java]       Ignored 1 unit with compilation errors in first pass.
build	08-Sep-2016 13:14:26	     [java] Compile with -strict or with -logLevel set to TRACE or DEBUG to see all errors.
build	08-Sep-2016 13:14:59	     [java]    Compiling 6 permutations
build	08-Sep-2016 13:14:59	     [java]       Compiling permutation 0...
build	08-Sep-2016 13:15:13	     [java]       Compiling permutation 1...
build	08-Sep-2016 13:15:23	     [java]       Compiling permutation 2...
build	08-Sep-2016 13:15:33	     [java]       Compiling permutation 3...
build	08-Sep-2016 13:15:43	     [java]       Compiling permutation 4...
build	08-Sep-2016 13:15:53	     [java]       Compiling permutation 5...
build	08-Sep-2016 13:16:03	     [java]    Compile of permutations succeeded
build	08-Sep-2016 13:16:05	     [java] Linking into /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/mmdb
build	08-Sep-2016 13:16:05	     [java]    Link succeeded
build	08-Sep-2016 13:16:05	     [java]    Compilation succeeded -- 118.286s
build	08-Sep-2016 13:16:07	     [java] Compiling module edu.illinois.ncsa.mmdb.web.Embed
build	08-Sep-2016 13:16:10	     [java]    Validating newly compiled units
build	08-Sep-2016 13:16:10	     [java]       Ignored 1 unit with compilation errors in first pass.
build	08-Sep-2016 13:16:10	     [java] Compile with -strict or with -logLevel set to TRACE or DEBUG to see all errors.
build	08-Sep-2016 13:16:36	     [java]    Compiling 6 permutations
build	08-Sep-2016 13:16:36	     [java]       Compiling permutation 0...
build	08-Sep-2016 13:16:43	     [java]       Compiling permutation 1...
build	08-Sep-2016 13:16:48	     [java]       Compiling permutation 2...
build	08-Sep-2016 13:16:53	     [java]       Compiling permutation 3...
build	08-Sep-2016 13:16:57	     [java]       Compiling permutation 4...
build	08-Sep-2016 13:17:02	     [java]       Compiling permutation 5...
build	08-Sep-2016 13:17:06	     [java]    Compile of permutations succeeded
build	08-Sep-2016 13:17:07	     [java] Linking into /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/embed
build	08-Sep-2016 13:17:07	     [java]    Link succeeded
build	08-Sep-2016 13:17:07	     [java]    Compilation succeeded -- 60.253s
build	08-Sep-2016 13:17:07	
build	08-Sep-2016 13:17:07	resources:
build	08-Sep-2016 13:17:07	     [copy] Copying 6 files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
build	08-Sep-2016 13:17:07	     [copy] Copying 1 file to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
build	08-Sep-2016 13:17:07	
build	08-Sep-2016 13:17:07	war:
build	08-Sep-2016 13:17:07	      [zip] Building zip: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/medici.war
build	08-Sep-2016 13:17:14	
build	08-Sep-2016 13:17:14	bamboo:
build	08-Sep-2016 13:17:14	
build	08-Sep-2016 13:17:14	BUILD SUCCESSFUL
build	08-Sep-2016 13:17:14	Total time: 3 minutes 24 seconds
simple	08-Sep-2016 13:17:14	Finished task 'Web App' with result: Success
simple	08-Sep-2016 13:17:14	Running post build plugin 'Docker Container Cleanup'
simple	08-Sep-2016 13:17:14	Running post build plugin 'NCover Results Collector'
simple	08-Sep-2016 13:17:14	Running post build plugin 'Clover Results Collector'
simple	08-Sep-2016 13:17:14	Running post build plugin 'npm Cache Cleanup'
simple	08-Sep-2016 13:17:14	Running post build plugin 'Artifact Copier'
simple	08-Sep-2016 13:17:14	Publishing an artifact: medici.war
simple	08-Sep-2016 13:17:19	Finished publishing of artifact Job artifact: [medici.war], pattern: [medici.war] anchored at: [mmdb-gwt/edu.illinois.ncsa.mmdb.web] in 5.245 s
simple	08-Sep-2016 13:17:19	Finalising the build...
simple	08-Sep-2016 13:17:19	Stopping timer.
simple	08-Sep-2016 13:17:19	Build MMDB-MEDICI70-JOB1-82 completed.
simple	08-Sep-2016 13:17:19	Running on server: post build plugin 'NCover Results Collector'
simple	08-Sep-2016 13:17:19	Running on server: post build plugin 'Build Hanging Detection Configuration'
simple	08-Sep-2016 13:17:19	Running on server: post build plugin 'Clover Delta Calculator'
simple	08-Sep-2016 13:17:19	Running on server: post build plugin 'Maven Dependencies Postprocessor'
simple	08-Sep-2016 13:17:19	All post build plugins have finished
simple	08-Sep-2016 13:17:19	Generating build results summary...
simple	08-Sep-2016 13:17:19	Saving build results to disk...
simple	08-Sep-2016 13:17:20	Logging substituted variables...
simple	08-Sep-2016 13:17:20	Indexing build results...
simple	08-Sep-2016 13:17:20	Finished building MMDB-MEDICI70-JOB1-82.