simple	04-Apr-2017 13:54:17	Build MMDB - Medici 1 GWT - 1.5.2-fixes - default #142 (MMDB-MEDICI78-JOB1-142) started building on agent buildserver-1.os.ncsa.edu
simple	04-Apr-2017 13:54:17	Remote agent on host buildserver-1.os.ncsa.edu
simple	04-Apr-2017 13:54:17	Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1
simple	04-Apr-2017 13:54:17	Executing build MMDB - Medici 1 GWT - 1.5.2-fixes - default #142 (MMDB-MEDICI78-JOB1-142)
simple	04-Apr-2017 13:54:17	Starting task 'Source Code Checkout' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
simple	04-Apr-2017 13:54:17	Build always requires a clean checkout
simple	04-Apr-2017 13:54:17	Cleaning build directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt'
simple	04-Apr-2017 13:54:17	Build always requires a clean checkout
simple	04-Apr-2017 13:54:17	Cleaning build directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet'
simple	04-Apr-2017 13:54:17	Updating source code to revision: 3457be147591c18cb7ce6250a84fe16a2c832dd0
simple	04-Apr-2017 13:54:17	Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/.git'.
simple	04-Apr-2017 13:54:17	Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/.git/
simple	04-Apr-2017 13:54:18	Fetching 'refs/heads/1.5.2-fixes' from 'https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git'. Will try to do a shallow fetch.
simple	04-Apr-2017 13:54:22	From https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web
simple	04-Apr-2017 13:54:22	 * [new branch]      1.5.2-fixes -> 1.5.2-fixes
simple	04-Apr-2017 13:54:22	Checking out revision 3457be147591c18cb7ce6250a84fe16a2c832dd0.
simple	04-Apr-2017 13:54:27	Switched to branch '1.5.2-fixes'
simple	04-Apr-2017 13:54:27	Updated source code to revision: 3457be147591c18cb7ce6250a84fe16a2c832dd0
simple	04-Apr-2017 13:54:27	Updating source code to revision: 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
simple	04-Apr-2017 13:54:27	Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/.git'.
simple	04-Apr-2017 13:54:27	Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/.git/
simple	04-Apr-2017 13:54:28	Fetching 'refs/heads/master' from 'https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git'. Will try to do a shallow fetch.
simple	04-Apr-2017 13:54:37	From https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet
simple	04-Apr-2017 13:54:37	 * [new branch]      master     -> master
simple	04-Apr-2017 13:54:37	Checking out revision 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e.
simple	04-Apr-2017 13:54:53	Already on 'master'
simple	04-Apr-2017 13:54:54	Updated source code to revision: 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
simple	04-Apr-2017 13:54:54	Finished task 'Source Code Checkout' with result: Success
simple	04-Apr-2017 13:54:54	Running pre-build action: VCS Version Collector
command	04-Apr-2017 13:54:54	Substituting variable: ${bamboo.repository.branch.name} with 1.5.2-fixes
command	04-Apr-2017 13:54:54	Substituting variable: ${bamboo.buildNumber} with 142
simple	04-Apr-2017 13:54:58	Starting task 'Web App' of type 'com.atlassian.bamboo.plugins.ant:task.builder.ant'
command	04-Apr-2017 13:55:02	Beginning to execute external process for build 'MMDB - Medici 1 GWT - 1.5.2-fixes - default #142 (MMDB-MEDICI78-JOB1-142)'\n ... running command line: \n/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI78-JOB1 bamboo -Dbamboo.version="1.5.2-fixes#142"\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web\n ... using extra environment variables: \nbamboo_planRepository_1_branch=1.5.2-fixes\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_planRepository_2_branch=master\nbamboo_planRepository_1_branchDisplayName=1.5.2-fixes\nbamboo_repository_revision_number=3457be147591c18cb7ce6250a84fe16a2c832dd0\nbamboo_buildKey=MMDB-MEDICI78-JOB1\nbamboo_repository_87130141_git_username=\nbamboo_repository_87130141_git_branch=1.5.2-fixes\nbamboo_planRepository_2_branchDisplayName=master\nbamboo_shortJobName=default\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI78-JOB1-142\nbamboo_repository_87130141_name=medici-gwt-web\nbamboo_planRepository_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_agentId=140673027\nbamboo_repository_18841602_branch_name=master\nbamboo_repository_87130141_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_planRepository_revision=3457be147591c18cb7ce6250a84fe16a2c832dd0\nbamboo_planRepository_previousRevision=0fb265271412f32c1c02fd2400c1d3dd54af9af9\nbamboo_repository_branch_name=1.5.2-fixes\nbamboo_repository_18841602_name=cet\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nJAVA_HOME=/home/bamboo/jdk1.7.0_60\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nANT_HOME=/home/bamboo/apache-ant-1.9.4\nbamboo_planRepository_branch=1.5.2-fixes\nbamboo_repository_18841602_previous_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_repository_87130141_revision_number=3457be147591c18cb7ce6250a84fe16a2c832dd0\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=1.5.2-fixes\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_planRepository_type=gitv2\nbamboo_planRepository_1_username=\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_2_branchName=master\nbamboo_repository_87130141_previous_revision_number=0fb265271412f32c1c02fd2400c1d3dd54af9af9\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_planKey=MMDB-MEDICI78\nbamboo_repository_18841602_git_branch=master\nbamboo_planRepository_username=\nbamboo_planRepository_1_branchName=1.5.2-fixes\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI78-JOB1-142\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_planRepository_1_name=medici-gwt-web\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=1.5.2-fixes\nbamboo_planRepository_2_username=\nbamboo_planRepository_name=medici-gwt-web\nbamboo_repository_87130141_branch_name=1.5.2-fixes\nbamboo_buildNumber=142\nbamboo_repository_18841602_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git\nbamboo_repository_18841602_git_username=\nbamboo_planName=MMDB - Medici 1 GWT - 1.5.2-fixes\nbamboo_shortPlanKey=MEDICI78\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_shortJobKey=JOB1\nbamboo_planRepository_2_name=cet\nbamboo_repository_previous_revision_number=0fb265271412f32c1c02fd2400c1d3dd54af9af9\nbamboo_buildTimeStamp=2017-04-04T13:54:17.387-05:00\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_buildResultKey=MMDB-MEDICI78-JOB1-142\nbamboo_repository_git_branch=1.5.2-fixes\nbamboo_buildPlanName=MMDB - Medici 1 GWT - 1.5.2-fixes - default\nbamboo_planRepository_1_revision=3457be147591c18cb7ce6250a84fe16a2c832dd0\nbamboo_repository_18841602_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_repository_name=cet\nbamboo_planRepository_2_previousRevision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_planRepository_2_revision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_planRepository_1_previousRevision=0fb265271412f32c1c02fd2400c1d3dd54af9af9\nbamboo_repository_git_username=\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_planRepository_branchDisplayName=1.5.2-fixes\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_planRepository_2_type=gitv2\nbamboo_plan_storageTag=MMDB-MEDICI78\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_planRepository_2_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git\nbamboo_repository_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1\nbamboo_planRepository_1_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nPATH=/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/jdk1.8.0_66/bin:/home/bamboo/node-v0.10.28/bin:/usr/bin:/bin\n
build	04-Apr-2017 13:55:04	Buildfile: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml
build	04-Apr-2017 13:55:18	
build	04-Apr-2017 13:55:18	cetbean:
build	04-Apr-2017 13:55:19	    [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
build	04-Apr-2017 13:55:19	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:85: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
build	04-Apr-2017 13:55:19	    [javac] Compiling 65 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
build	04-Apr-2017 13:55:19	    [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5
build	04-Apr-2017 13:55:20	    [javac] 1 warning
build	04-Apr-2017 13:55:20	      [jar] Building jar: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/lib/cet-bean.jar
build	04-Apr-2017 13:55:20	   [delete] Deleting directory /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
build	04-Apr-2017 13:55:20	    [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
build	04-Apr-2017 13:55:20	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:100: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
build	04-Apr-2017 13:55:20	    [javac] Compiling 97 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
build	04-Apr-2017 13:55:20	    [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5
build	04-Apr-2017 13:55:21	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:48: warning: BASE64Encoder is internal proprietary API and may be removed in a future release
build	04-Apr-2017 13:55:21	    [javac] import sun.misc.BASE64Encoder;
build	04-Apr-2017 13:55:21	    [javac]                ^
build	04-Apr-2017 13:55:22	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/TagEventBeanUtil.java:72: warning: [deprecation] encode(String) in URLEncoder has been deprecated
build	04-Apr-2017 13:55:22	    [javac]         return Resource.uriRef("tag:cet.ncsa.uiuc.edu,2008:/tag#" + URLEncoder.encode(tag)); //$NON-NLS-1$
build	04-Apr-2017 13:55:22	    [javac]                                                                               ^
build	04-Apr-2017 13:55:22	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/VisualizationBeanUtil.java:73: warning: [deprecation] clone(T,PersonBean) in TupeloBeanUtil has been deprecated
build	04-Apr-2017 13:55:22	    [javac]     public VisualizationBean clone(VisualizationBean bean, PersonBean creator)
build	04-Apr-2017 13:55:22	    [javac]                              ^
build	04-Apr-2017 13:55:22	    [javac]   where T is a type-variable:
build	04-Apr-2017 13:55:22	    [javac]     T extends CETBean declared in class TupeloBeanUtil
build	04-Apr-2017 13:55:22	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/VisualizationBeanUtil.java:83: warning: [deprecation] clone(ConfigurationBean,PersonBean) in ConfigurationBeanUtil has been deprecated
build	04-Apr-2017 13:55:22	    [javac]             ConfigurationBean configuration = cbu.clone(bean.getConfiguration(), creator);
build	04-Apr-2017 13:55:22	    [javac]                                                  ^
build	04-Apr-2017 13:55:22	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:442: warning: [deprecation] ADMIN_ROLE in MMDB has been deprecated
build	04-Apr-2017 13:55:22	    [javac]             if (!t.getObject().equals(MMDB.ADMIN_ROLE) && !t.getObject().equals(MMDB.REGULAR_MEMBER_ROLE)) {
build	04-Apr-2017 13:55:22	    [javac]                                           ^
build	04-Apr-2017 13:55:22	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:442: warning: [deprecation] REGULAR_MEMBER_ROLE in MMDB has been deprecated
build	04-Apr-2017 13:55:22	    [javac]             if (!t.getObject().equals(MMDB.ADMIN_ROLE) && !t.getObject().equals(MMDB.REGULAR_MEMBER_ROLE)) {
build	04-Apr-2017 13:55:22	    [javac]                                                                                     ^
build	04-Apr-2017 13:55:22	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:452: warning: [deprecation] ADMIN_ROLE in MMDB has been deprecated
build	04-Apr-2017 13:55:22	    [javac]         createRole(MMDB.ADMIN_ROLE, "Administrator");
build	04-Apr-2017 13:55:22	    [javac]                        ^
build	04-Apr-2017 13:55:22	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:453: warning: [deprecation] REGULAR_MEMBER_ROLE in MMDB has been deprecated
build	04-Apr-2017 13:55:22	    [javac]         createRole(MMDB.REGULAR_MEMBER_ROLE, "Member");
build	04-Apr-2017 13:55:22	    [javac]                        ^
build	04-Apr-2017 13:55:22	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:78: warning: BASE64Encoder is internal proprietary API and may be removed in a future release
build	04-Apr-2017 13:55:22	    [javac]         BASE64Encoder encoder = new BASE64Encoder();
build	04-Apr-2017 13:55:22	    [javac]         ^
build	04-Apr-2017 13:55:22	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:78: warning: BASE64Encoder is internal proprietary API and may be removed in a future release
build	04-Apr-2017 13:55:22	    [javac]         BASE64Encoder encoder = new BASE64Encoder();
build	04-Apr-2017 13:55:22	    [javac]                                     ^
build	04-Apr-2017 13:55:22	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:28: warning: [deprecation] Rdf in Vocabulary has been deprecated
build	04-Apr-2017 13:55:22	    [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.PARAMETER)); //$NON-NLS-1$
build	04-Apr-2017 13:55:22	    [javac]                                                     ^
build	04-Apr-2017 13:55:22	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:40: warning: [deprecation] Rdf in Vocabulary has been deprecated
build	04-Apr-2017 13:55:22	    [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.PARAMETER)); //$NON-NLS-1$
build	04-Apr-2017 13:55:22	    [javac]                                                     ^
build	04-Apr-2017 13:55:22	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:58: warning: [deprecation] Rdf in Vocabulary has been deprecated
build	04-Apr-2017 13:55:22	    [javac]         uf.addPattern(new Pattern("input", Vocabulary.Rdf.TYPE, Cyberintegrator.DATASET)); //$NON-NLS-1$
build	04-Apr-2017 13:55:22	    [javac]                                                      ^
build	04-Apr-2017 13:55:22	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:82: warning: [deprecation] Rdf in Vocabulary has been deprecated
build	04-Apr-2017 13:55:22	    [javac]         uf.addPattern(new Pattern("output", Vocabulary.Rdf.TYPE, Cyberintegrator.DATASET)); //$NON-NLS-1$
build	04-Apr-2017 13:55:22	    [javac]                                                       ^
build	04-Apr-2017 13:55:22	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowToolDataDAO.java:26: warning: [deprecation] Rdf in Vocabulary has been deprecated
build	04-Apr-2017 13:55:22	    [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.TOOL_DATA)); //$NON-NLS-1$
build	04-Apr-2017 13:55:22	    [javac]                                                     ^
build	04-Apr-2017 13:55:22	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowToolDataDAO.java:41: warning: [deprecation] Rdf in Vocabulary has been deprecated
build	04-Apr-2017 13:55:22	    [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.TOOL_DATA)); //$NON-NLS-1$
build	04-Apr-2017 13:55:22	    [javac]                                                     ^
build	04-Apr-2017 13:55:22	    [javac] 17 warnings
build	04-Apr-2017 13:55:22	      [jar] Building jar: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/lib/cet-bean-tupelo.jar
build	04-Apr-2017 13:55:22	   [delete] Deleting directory /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
build	04-Apr-2017 13:55:22	
build	04-Apr-2017 13:55:22	updateversion:
build	04-Apr-2017 13:55:22	
build	04-Apr-2017 13:55:22	clean:
build	04-Apr-2017 13:55:22	
build	04-Apr-2017 13:55:22	compile:
build	04-Apr-2017 13:55:22	    [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
build	04-Apr-2017 13:55:22	    [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:126: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
build	04-Apr-2017 13:55:23	    [javac] Compiling 591 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
build	04-Apr-2017 13:55:29	    [javac] Note: Some input files use unchecked or unsafe operations.
build	04-Apr-2017 13:55:29	    [javac] Note: Recompile with -Xlint:unchecked for details.
build	04-Apr-2017 13:55:29	
build	04-Apr-2017 13:55:29	gwtc:
build	04-Apr-2017 13:55:29	     [java] Apr 04, 2017 1:55:29 PM java.util.prefs.FileSystemPreferences$6 run
build	04-Apr-2017 13:55:29	     [java] WARNING: Prefs file removed in background /home/bamboo/.java/.userPrefs/com/google/gwt/dev/shell/prefs.xml
build	04-Apr-2017 13:55:30	     [java] Compiling module edu.illinois.ncsa.mmdb.web.MMDB
build	04-Apr-2017 13:55:41	     [java]    Validating newly compiled units
build	04-Apr-2017 13:55:41	     [java]       Ignored 1 unit with compilation errors in first pass.
build	04-Apr-2017 13:55:41	     [java] Compile with -strict or with -logLevel set to TRACE or DEBUG to see all errors.
build	04-Apr-2017 13:55:59	     [java] Exception in thread "Timer-0" java.lang.NoClassDefFoundError: org/w3c/dom/ElementTraversal
build	04-Apr-2017 13:55:59	     [java] 	at java.lang.ClassLoader.defineClass1(Native Method)
build	04-Apr-2017 13:55:59	     [java] 	at java.lang.ClassLoader.defineClass(ClassLoader.java:800)
build	04-Apr-2017 13:55:59	     [java] 	at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
build	04-Apr-2017 13:55:59	     [java] 	at java.net.URLClassLoader.defineClass(URLClassLoader.java:449)
build	04-Apr-2017 13:55:59	     [java] 	at java.net.URLClassLoader.access$100(URLClassLoader.java:71)
build	04-Apr-2017 13:55:59	     [java] 	at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
build	04-Apr-2017 13:55:59	     [java] 	at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
build	04-Apr-2017 13:55:59	     [java] 	at java.security.AccessController.doPrivileged(Native Method)
build	04-Apr-2017 13:55:59	     [java] 	at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
build	04-Apr-2017 13:55:59	     [java] 	at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
build	04-Apr-2017 13:55:59	     [java] 	at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
build	04-Apr-2017 13:55:59	     [java] 	at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
build	04-Apr-2017 13:55:59	     [java] 	at org.apache.xerces.dom.DOMImplementationImpl.createDocument(Unknown Source)
build	04-Apr-2017 13:55:59	     [java] 	at org.apache.xerces.dom.CoreDOMImplementationImpl.createDocument(Unknown Source)
build	04-Apr-2017 13:55:59	     [java] 	at java.util.prefs.XmlSupport.createPrefsDoc(XmlSupport.java:228)
build	04-Apr-2017 13:55:59	     [java] 	at java.util.prefs.XmlSupport.exportMap(XmlSupport.java:343)
build	04-Apr-2017 13:55:59	     [java] 	at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:622)
build	04-Apr-2017 13:55:59	     [java] 	at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:615)
build	04-Apr-2017 13:55:59	     [java] 	at java.security.AccessController.doPrivileged(Native Method)
build	04-Apr-2017 13:55:59	     [java] 	at java.util.prefs.FileSystemPreferences.writeBackCache(FileSystemPreferences.java:614)
build	04-Apr-2017 13:55:59	     [java] 	at java.util.prefs.FileSystemPreferences.syncSpiPrivileged(FileSystemPreferences.java:801)
build	04-Apr-2017 13:55:59	     [java] 	at java.util.prefs.FileSystemPreferences.access$2300(FileSystemPreferences.java:50)
build	04-Apr-2017 13:55:59	     [java] 	at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:771)
build	04-Apr-2017 13:55:59	     [java] 	at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:769)
build	04-Apr-2017 13:55:59	     [java] 	at java.security.AccessController.doPrivileged(Native Method)
build	04-Apr-2017 13:55:59	     [java] 	at java.util.prefs.FileSystemPreferences.syncSpi(FileSystemPreferences.java:768)
build	04-Apr-2017 13:55:59	     [java] 	at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1332)
build	04-Apr-2017 13:55:59	     [java] 	at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
build	04-Apr-2017 13:55:59	     [java] 	at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
build	04-Apr-2017 13:55:59	     [java] 	at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
build	04-Apr-2017 13:55:59	     [java] 	at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
build	04-Apr-2017 13:55:59	     [java] 	at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
build	04-Apr-2017 13:55:59	     [java] 	at java.util.prefs.AbstractPreferences.sync(AbstractPreferences.java:1323)
build	04-Apr-2017 13:55:59	     [java] 	at java.util.prefs.FileSystemPreferences.sync(FileSystemPreferences.java:747)
build	04-Apr-2017 13:55:59	     [java] 	at java.util.prefs.FileSystemPreferences.flush(FileSystemPreferences.java:824)
build	04-Apr-2017 13:55:59	     [java] 	at java.util.prefs.FileSystemPreferences.syncWorld(FileSystemPreferences.java:464)
build	04-Apr-2017 13:55:59	     [java] 	at java.util.prefs.FileSystemPreferences.access$1200(FileSystemPreferences.java:50)
build	04-Apr-2017 13:55:59	     [java] 	at java.util.prefs.FileSystemPreferences$3.run(FileSystemPreferences.java:432)
build	04-Apr-2017 13:55:59	     [java] 	at java.util.TimerThread.mainLoop(Timer.java:555)
build	04-Apr-2017 13:55:59	     [java] 	at java.util.TimerThread.run(Timer.java:505)
build	04-Apr-2017 13:55:59	     [java] Caused by: java.lang.ClassNotFoundException: org.w3c.dom.ElementTraversal
build	04-Apr-2017 13:55:59	     [java] 	at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
build	04-Apr-2017 13:55:59	     [java] 	at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
build	04-Apr-2017 13:55:59	     [java] 	at java.security.AccessController.doPrivileged(Native Method)
build	04-Apr-2017 13:55:59	     [java] 	at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
build	04-Apr-2017 13:55:59	     [java] 	at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
build	04-Apr-2017 13:55:59	     [java] 	at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
build	04-Apr-2017 13:55:59	     [java] 	at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
build	04-Apr-2017 13:55:59	     [java] 	... 40 more
build	04-Apr-2017 13:56:01	     [java]    Compiling 6 permutations
build	04-Apr-2017 13:56:01	     [java]       Compiling permutation 0...
build	04-Apr-2017 13:56:08	     [java]       Compiling permutation 1...
build	04-Apr-2017 13:56:13	     [java]       Compiling permutation 2...
build	04-Apr-2017 13:56:19	     [java]       Compiling permutation 3...
build	04-Apr-2017 13:56:23	     [java]       Compiling permutation 4...
build	04-Apr-2017 13:56:28	     [java]       Compiling permutation 5...
build	04-Apr-2017 13:56:32	     [java]    Compile of permutations succeeded
build	04-Apr-2017 13:56:32	     [java] Linking into /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/mmdb
build	04-Apr-2017 13:56:32	     [java]    Link succeeded
build	04-Apr-2017 13:56:32	     [java]    Compilation succeeded -- 62.840s
build	04-Apr-2017 13:56:32	     [java] Exception in thread "Thread-1" java.lang.NoClassDefFoundError: org/w3c/dom/ElementTraversal
build	04-Apr-2017 13:56:32	     [java] 	at java.lang.ClassLoader.defineClass1(Native Method)
build	04-Apr-2017 13:56:32	     [java] 	at java.lang.ClassLoader.defineClass(ClassLoader.java:800)
build	04-Apr-2017 13:56:32	     [java] 	at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
build	04-Apr-2017 13:56:32	     [java] 	at java.net.URLClassLoader.defineClass(URLClassLoader.java:449)
build	04-Apr-2017 13:56:32	     [java] 	at java.net.URLClassLoader.access$100(URLClassLoader.java:71)
build	04-Apr-2017 13:56:32	     [java] 	at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
build	04-Apr-2017 13:56:32	     [java] 	at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
build	04-Apr-2017 13:56:32	     [java] 	at java.security.AccessController.doPrivileged(Native Method)
build	04-Apr-2017 13:56:32	     [java] 	at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
build	04-Apr-2017 13:56:32	     [java] 	at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
build	04-Apr-2017 13:56:32	     [java] 	at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
build	04-Apr-2017 13:56:32	     [java] 	at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
build	04-Apr-2017 13:56:32	     [java] 	at org.apache.xerces.dom.DOMImplementationImpl.createDocument(Unknown Source)
build	04-Apr-2017 13:56:32	     [java] 	at org.apache.xerces.dom.CoreDOMImplementationImpl.createDocument(Unknown Source)
build	04-Apr-2017 13:56:32	     [java] 	at java.util.prefs.XmlSupport.createPrefsDoc(XmlSupport.java:228)
build	04-Apr-2017 13:56:32	     [java] 	at java.util.prefs.XmlSupport.exportMap(XmlSupport.java:343)
build	04-Apr-2017 13:56:32	     [java] 	at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:622)
build	04-Apr-2017 13:56:32	     [java] 	at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:615)
build	04-Apr-2017 13:56:32	     [java] 	at java.security.AccessController.doPrivileged(Native Method)
build	04-Apr-2017 13:56:32	     [java] 	at java.util.prefs.FileSystemPreferences.writeBackCache(FileSystemPreferences.java:614)
build	04-Apr-2017 13:56:32	     [java] 	at java.util.prefs.FileSystemPreferences.syncSpiPrivileged(FileSystemPreferences.java:801)
build	04-Apr-2017 13:56:32	     [java] 	at java.util.prefs.FileSystemPreferences.access$2300(FileSystemPreferences.java:50)
build	04-Apr-2017 13:56:32	     [java] 	at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:771)
build	04-Apr-2017 13:56:32	     [java] 	at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:769)
build	04-Apr-2017 13:56:32	     [java] 	at java.security.AccessController.doPrivileged(Native Method)
build	04-Apr-2017 13:56:32	     [java] 	at java.util.prefs.FileSystemPreferences.syncSpi(FileSystemPreferences.java:768)
build	04-Apr-2017 13:56:32	     [java] 	at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1332)
build	04-Apr-2017 13:56:32	     [java] 	at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
build	04-Apr-2017 13:56:32	     [java] 	at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
build	04-Apr-2017 13:56:32	     [java] 	at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
build	04-Apr-2017 13:56:32	     [java] 	at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
build	04-Apr-2017 13:56:32	     [java] 	at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
build	04-Apr-2017 13:56:32	     [java] 	at java.util.prefs.AbstractPreferences.sync(AbstractPreferences.java:1323)
build	04-Apr-2017 13:56:32	     [java] 	at java.util.prefs.FileSystemPreferences.sync(FileSystemPreferences.java:747)
build	04-Apr-2017 13:56:32	     [java] 	at java.util.prefs.FileSystemPreferences.flush(FileSystemPreferences.java:824)
build	04-Apr-2017 13:56:32	     [java] 	at java.util.prefs.FileSystemPreferences.syncWorld(FileSystemPreferences.java:464)
build	04-Apr-2017 13:56:32	     [java] 	at java.util.prefs.FileSystemPreferences.access$1200(FileSystemPreferences.java:50)
build	04-Apr-2017 13:56:32	     [java] 	at java.util.prefs.FileSystemPreferences$4$1.run(FileSystemPreferences.java:442)
build	04-Apr-2017 13:56:32	     [java] Caused by: java.lang.ClassNotFoundException: org.w3c.dom.ElementTraversal
build	04-Apr-2017 13:56:32	     [java] 	at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
build	04-Apr-2017 13:56:32	     [java] 	at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
build	04-Apr-2017 13:56:32	     [java] 	at java.security.AccessController.doPrivileged(Native Method)
build	04-Apr-2017 13:56:32	     [java] 	at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
build	04-Apr-2017 13:56:32	     [java] 	at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
build	04-Apr-2017 13:56:32	     [java] 	at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
build	04-Apr-2017 13:56:32	     [java] 	at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
build	04-Apr-2017 13:56:32	     [java] 	... 38 more
build	04-Apr-2017 13:56:33	     [java] Apr 04, 2017 1:56:33 PM java.util.prefs.FileSystemPreferences$6 run
build	04-Apr-2017 13:56:33	     [java] WARNING: Prefs file removed in background /home/bamboo/.java/.userPrefs/com/google/gwt/dev/shell/prefs.xml
build	04-Apr-2017 13:56:33	     [java] Compiling module edu.illinois.ncsa.mmdb.web.Embed
build	04-Apr-2017 13:56:35	     [java]    Validating newly compiled units
build	04-Apr-2017 13:56:35	     [java]       Ignored 1 unit with compilation errors in first pass.
build	04-Apr-2017 13:56:35	     [java] Compile with -strict or with -logLevel set to TRACE or DEBUG to see all errors.
build	04-Apr-2017 13:56:52	     [java]    Compiling 6 permutations
build	04-Apr-2017 13:56:52	     [java]       Compiling permutation 0...
build	04-Apr-2017 13:56:56	     [java]       Compiling permutation 1...
build	04-Apr-2017 13:56:59	     [java]       Compiling permutation 2...
build	04-Apr-2017 13:57:01	     [java]       Compiling permutation 3...
build	04-Apr-2017 13:57:03	     [java] Exception in thread "Timer-0" java.lang.NoClassDefFoundError: org/w3c/dom/ElementTraversal
build	04-Apr-2017 13:57:03	     [java] 	at java.lang.ClassLoader.defineClass1(Native Method)
build	04-Apr-2017 13:57:03	     [java] 	at java.lang.ClassLoader.defineClass(ClassLoader.java:800)
build	04-Apr-2017 13:57:03	     [java] 	at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
build	04-Apr-2017 13:57:03	     [java] 	at java.net.URLClassLoader.defineClass(URLClassLoader.java:449)
build	04-Apr-2017 13:57:03	     [java] 	at java.net.URLClassLoader.access$100(URLClassLoader.java:71)
build	04-Apr-2017 13:57:03	     [java] 	at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
build	04-Apr-2017 13:57:03	     [java] 	at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
build	04-Apr-2017 13:57:03	     [java] 	at java.security.AccessController.doPrivileged(Native Method)
build	04-Apr-2017 13:57:03	     [java] 	at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
build	04-Apr-2017 13:57:03	     [java] 	at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
build	04-Apr-2017 13:57:03	     [java] 	at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
build	04-Apr-2017 13:57:03	     [java] 	at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
build	04-Apr-2017 13:57:03	     [java] 	at org.apache.xerces.dom.DOMImplementationImpl.createDocument(Unknown Source)
build	04-Apr-2017 13:57:03	     [java] 	at org.apache.xerces.dom.CoreDOMImplementationImpl.createDocument(Unknown Source)
build	04-Apr-2017 13:57:03	     [java] 	at java.util.prefs.XmlSupport.createPrefsDoc(XmlSupport.java:228)
build	04-Apr-2017 13:57:03	     [java] 	at java.util.prefs.XmlSupport.exportMap(XmlSupport.java:343)
build	04-Apr-2017 13:57:03	     [java] 	at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:622)
build	04-Apr-2017 13:57:03	     [java] 	at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:615)
build	04-Apr-2017 13:57:03	     [java] 	at java.security.AccessController.doPrivileged(Native Method)
build	04-Apr-2017 13:57:03	     [java] 	at java.util.prefs.FileSystemPreferences.writeBackCache(FileSystemPreferences.java:614)
build	04-Apr-2017 13:57:03	     [java] 	at java.util.prefs.FileSystemPreferences.syncSpiPrivileged(FileSystemPreferences.java:801)
build	04-Apr-2017 13:57:03	     [java] 	at java.util.prefs.FileSystemPreferences.access$2300(FileSystemPreferences.java:50)
build	04-Apr-2017 13:57:03	     [java] 	at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:771)
build	04-Apr-2017 13:57:03	     [java] 	at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:769)
build	04-Apr-2017 13:57:03	     [java] 	at java.security.AccessController.doPrivileged(Native Method)
build	04-Apr-2017 13:57:03	     [java] 	at java.util.prefs.FileSystemPreferences.syncSpi(FileSystemPreferences.java:768)
build	04-Apr-2017 13:57:03	     [java] 	at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1332)
build	04-Apr-2017 13:57:03	     [java] 	at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
build	04-Apr-2017 13:57:03	     [java] 	at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
build	04-Apr-2017 13:57:03	     [java] 	at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
build	04-Apr-2017 13:57:03	     [java] 	at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
build	04-Apr-2017 13:57:03	     [java] 	at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
build	04-Apr-2017 13:57:03	     [java] 	at java.util.prefs.AbstractPreferences.sync(AbstractPreferences.java:1323)
build	04-Apr-2017 13:57:03	     [java] 	at java.util.prefs.FileSystemPreferences.sync(FileSystemPreferences.java:747)
build	04-Apr-2017 13:57:03	     [java] 	at java.util.prefs.FileSystemPreferences.flush(FileSystemPreferences.java:824)
build	04-Apr-2017 13:57:03	     [java] 	at java.util.prefs.FileSystemPreferences.syncWorld(FileSystemPreferences.java:464)
build	04-Apr-2017 13:57:03	     [java] 	at java.util.prefs.FileSystemPreferences.access$1200(FileSystemPreferences.java:50)
build	04-Apr-2017 13:57:03	     [java] 	at java.util.prefs.FileSystemPreferences$3.run(FileSystemPreferences.java:432)
build	04-Apr-2017 13:57:03	     [java] 	at java.util.TimerThread.mainLoop(Timer.java:555)
build	04-Apr-2017 13:57:03	     [java] 	at java.util.TimerThread.run(Timer.java:505)
build	04-Apr-2017 13:57:03	     [java] Caused by: java.lang.ClassNotFoundException: org.w3c.dom.ElementTraversal
build	04-Apr-2017 13:57:03	     [java] 	at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
build	04-Apr-2017 13:57:03	     [java] 	at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
build	04-Apr-2017 13:57:03	     [java] 	at java.security.AccessController.doPrivileged(Native Method)
build	04-Apr-2017 13:57:03	     [java] 	at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
build	04-Apr-2017 13:57:03	     [java] 	at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
build	04-Apr-2017 13:57:03	     [java] 	at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
build	04-Apr-2017 13:57:03	     [java] 	at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
build	04-Apr-2017 13:57:03	     [java] 	... 40 more
build	04-Apr-2017 13:57:04	     [java]       Compiling permutation 4...
build	04-Apr-2017 13:57:06	     [java]       Compiling permutation 5...
build	04-Apr-2017 13:57:08	     [java]    Compile of permutations succeeded
build	04-Apr-2017 13:57:08	     [java] Exception in thread "Thread-1" java.lang.NoClassDefFoundError: org/w3c/dom/ElementTraversal
build	04-Apr-2017 13:57:08	     [java] 	at java.lang.ClassLoader.defineClass1(Native Method)
build	04-Apr-2017 13:57:08	     [java] 	at java.lang.ClassLoader.defineClass(ClassLoader.java:800)
build	04-Apr-2017 13:57:08	     [java] Linking into /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/embed
build	04-Apr-2017 13:57:08	     [java]    Link succeeded
build	04-Apr-2017 13:57:08	     [java]    Compilation succeeded -- 35.093s
build	04-Apr-2017 13:57:08	     [java] 	at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
build	04-Apr-2017 13:57:08	     [java] 	at java.net.URLClassLoader.defineClass(URLClassLoader.java:449)
build	04-Apr-2017 13:57:08	     [java] 	at java.net.URLClassLoader.access$100(URLClassLoader.java:71)
build	04-Apr-2017 13:57:08	     [java] 	at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
build	04-Apr-2017 13:57:08	     [java] 	at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
build	04-Apr-2017 13:57:08	     [java] 	at java.security.AccessController.doPrivileged(Native Method)
build	04-Apr-2017 13:57:08	     [java] 	at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
build	04-Apr-2017 13:57:08	     [java] 	at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
build	04-Apr-2017 13:57:08	     [java] 	at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
build	04-Apr-2017 13:57:08	     [java] 	at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
build	04-Apr-2017 13:57:08	     [java] 	at org.apache.xerces.dom.DOMImplementationImpl.createDocument(Unknown Source)
build	04-Apr-2017 13:57:08	     [java] 	at org.apache.xerces.dom.CoreDOMImplementationImpl.createDocument(Unknown Source)
build	04-Apr-2017 13:57:08	     [java] 	at java.util.prefs.XmlSupport.createPrefsDoc(XmlSupport.java:228)
build	04-Apr-2017 13:57:08	     [java] 	at java.util.prefs.XmlSupport.exportMap(XmlSupport.java:343)
build	04-Apr-2017 13:57:08	     [java] 	at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:622)
build	04-Apr-2017 13:57:08	     [java] 	at java.util.prefs.FileSystemPreferences$7.run(FileSystemPreferences.java:615)
build	04-Apr-2017 13:57:08	     [java] 	at java.security.AccessController.doPrivileged(Native Method)
build	04-Apr-2017 13:57:08	     [java] 	at java.util.prefs.FileSystemPreferences.writeBackCache(FileSystemPreferences.java:614)
build	04-Apr-2017 13:57:08	     [java] 	at java.util.prefs.FileSystemPreferences.syncSpiPrivileged(FileSystemPreferences.java:801)
build	04-Apr-2017 13:57:08	     [java] 	at java.util.prefs.FileSystemPreferences.access$2300(FileSystemPreferences.java:50)
build	04-Apr-2017 13:57:08	     [java] 	at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:771)
build	04-Apr-2017 13:57:08	     [java] 	at java.util.prefs.FileSystemPreferences$12.run(FileSystemPreferences.java:769)
build	04-Apr-2017 13:57:08	     [java] 	at java.security.AccessController.doPrivileged(Native Method)
build	04-Apr-2017 13:57:08	     [java] 	at java.util.prefs.FileSystemPreferences.syncSpi(FileSystemPreferences.java:768)
build	04-Apr-2017 13:57:08	     [java] 	at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1332)
build	04-Apr-2017 13:57:08	     [java] 	at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
build	04-Apr-2017 13:57:08	     [java] 	at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
build	04-Apr-2017 13:57:08	     [java] 	at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
build	04-Apr-2017 13:57:08	     [java] 	at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
build	04-Apr-2017 13:57:08	     [java] 	at java.util.prefs.AbstractPreferences.sync2(AbstractPreferences.java:1337)
build	04-Apr-2017 13:57:08	     [java] 	at java.util.prefs.AbstractPreferences.sync(AbstractPreferences.java:1323)
build	04-Apr-2017 13:57:08	     [java] 	at java.util.prefs.FileSystemPreferences.sync(FileSystemPreferences.java:747)
build	04-Apr-2017 13:57:08	     [java] 	at java.util.prefs.FileSystemPreferences.flush(FileSystemPreferences.java:824)
build	04-Apr-2017 13:57:08	     [java] 	at java.util.prefs.FileSystemPreferences.syncWorld(FileSystemPreferences.java:464)
build	04-Apr-2017 13:57:08	     [java] 	at java.util.prefs.FileSystemPreferences.access$1200(FileSystemPreferences.java:50)
build	04-Apr-2017 13:57:08	     [java] 	at java.util.prefs.FileSystemPreferences$4$1.run(FileSystemPreferences.java:442)
build	04-Apr-2017 13:57:08	     [java] Caused by: java.lang.ClassNotFoundException: org.w3c.dom.ElementTraversal
build	04-Apr-2017 13:57:08	     [java] 	at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
build	04-Apr-2017 13:57:08	     [java] 	at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
build	04-Apr-2017 13:57:08	     [java] 	at java.security.AccessController.doPrivileged(Native Method)
build	04-Apr-2017 13:57:08	     [java] 	at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
build	04-Apr-2017 13:57:08	     [java] 	at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
build	04-Apr-2017 13:57:08	     [java] 	at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
build	04-Apr-2017 13:57:08	     [java] 	at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
build	04-Apr-2017 13:57:08	     [java] 	... 38 more
build	04-Apr-2017 13:57:08	
build	04-Apr-2017 13:57:08	resources:
build	04-Apr-2017 13:57:08	     [copy] Copying 6 files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
build	04-Apr-2017 13:57:08	     [copy] Copying 1 file to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
build	04-Apr-2017 13:57:08	
build	04-Apr-2017 13:57:08	war:
build	04-Apr-2017 13:57:08	      [zip] Building zip: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI78-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/medici.war
build	04-Apr-2017 13:57:11	
build	04-Apr-2017 13:57:11	bamboo:
build	04-Apr-2017 13:57:13	
build	04-Apr-2017 13:57:13	BUILD SUCCESSFUL
build	04-Apr-2017 13:57:13	Total time: 2 minutes 7 seconds
simple	04-Apr-2017 13:57:13	Finished task 'Web App' with result: Success
simple	04-Apr-2017 13:57:13	Running post build plugin 'Docker Container Cleanup'
simple	04-Apr-2017 13:57:13	Running post build plugin 'NCover Results Collector'
simple	04-Apr-2017 13:57:13	Running post build plugin 'Clover Results Collector'
simple	04-Apr-2017 13:57:13	Running post build plugin 'npm Cache Cleanup'
simple	04-Apr-2017 13:57:13	Running post build plugin 'Artifact Copier'
simple	04-Apr-2017 13:57:13	Publishing an artifact: medici.war
simple	04-Apr-2017 13:57:16	Finished publishing of artifact Job artifact: [medici.war], pattern: [medici.war] anchored at: [mmdb-gwt/edu.illinois.ncsa.mmdb.web] in 2.870 s
simple	04-Apr-2017 13:57:16	Finalising the build...
simple	04-Apr-2017 13:57:16	Stopping timer.
simple	04-Apr-2017 13:57:16	Build MMDB-MEDICI78-JOB1-142 completed.
simple	04-Apr-2017 13:57:16	Running on server: post build plugin 'NCover Results Collector'
simple	04-Apr-2017 13:57:16	Running on server: post build plugin 'Build Hanging Detection Configuration'
simple	04-Apr-2017 13:57:16	Running on server: post build plugin 'Clover Delta Calculator'
simple	04-Apr-2017 13:57:16	Running on server: post build plugin 'Maven Dependencies Postprocessor'
simple	04-Apr-2017 13:57:16	All post build plugins have finished
simple	04-Apr-2017 13:57:16	Generating build results summary...
simple	04-Apr-2017 13:57:16	Saving build results to disk...
simple	04-Apr-2017 13:57:16	Logging substituted variables...
simple	04-Apr-2017 13:57:16	Indexing build results...
simple	04-Apr-2017 13:57:16	Finished building MMDB-MEDICI78-JOB1-142.