simple 05-Oct-2018 14:34:13 Build Polyglot - converters-ncdump - Default Job #9 (POL-CONVNCDUMP-JOB1-9) started building on agent buildserver-2.os.ncsa.edu simple 05-Oct-2018 14:34:13 Remote agent on host buildserver-2.os.ncsa.edu simple 05-Oct-2018 14:34:14 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/POL-CONVNCDUMP-JOB1 simple 05-Oct-2018 14:34:14 Executing build Polyglot - converters-ncdump - Default Job #9 (POL-CONVNCDUMP-JOB1-9) simple 05-Oct-2018 14:34:14 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 05-Oct-2018 14:34:14 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/POL-CONVNCDUMP-JOB1 simple 05-Oct-2018 14:34:14 Updating source code to revision: 14ed88c7635a8552680cd5574b4a5809db41aa3d simple 05-Oct-2018 14:34:14 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/POL-CONVNCDUMP-JOB1/.git'. simple 05-Oct-2018 14:34:14 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/POL-CONVNCDUMP-JOB1/.git/ simple 05-Oct-2018 14:34:14 Fetching 'refs/heads/master' from 'ssh://git@opensource.ncsa.illinois.edu:7999/pol/converters-ncdump.git'. Will try to do a shallow fetch. simple 05-Oct-2018 14:34:14 Warning: Permanently added '[127.0.0.1]:37220' (RSA) to the list of known hosts. simple 05-Oct-2018 14:34:14 From ssh://127.0.0.1:37220/pol/converters-ncdump simple 05-Oct-2018 14:34:14 * [new branch] master -> master simple 05-Oct-2018 14:34:14 * [new tag] browndog_v0.2.0 -> browndog_v0.2.0 simple 05-Oct-2018 14:34:14 * [new tag] browndog_v0.3.0 -> browndog_v0.3.0 simple 05-Oct-2018 14:34:14 Checking out revision 14ed88c7635a8552680cd5574b4a5809db41aa3d. simple 05-Oct-2018 14:34:14 Already on 'master' simple 05-Oct-2018 14:34:14 Updated source code to revision: 14ed88c7635a8552680cd5574b4a5809db41aa3d simple 05-Oct-2018 14:34:14 Finished task 'Checkout Default Repository' with result: Success simple 05-Oct-2018 14:34:14 Running pre-build action: VCS Version Collector simple 05-Oct-2018 14:34:14 Starting task 'make container' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 05-Oct-2018 14:34:14 Beginning to execute external process for build 'Polyglot - converters-ncdump - Default Job #9 (POL-CONVNCDUMP-JOB1-9)'\n ... running command line: \n/home/bamboo/bamboo-agent-home/temp/POL-CONVNCDUMP-JOB1-9-ScriptBuildTask-2842111607623147122.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/POL-CONVNCDUMP-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=master\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_repository_145064016_git_branch=master\nbamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster\nbamboo_dependency_parent_0=POL-MAIN-174\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_dependency_parent_total=1\nbamboo_planRepository_1_branchDisplayName=master\nbamboo_repository_revision_number=14ed88c7635a8552680cd5574b4a5809db41aa3d\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/POL-CONVNCDUMP-JOB1-9\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/POL-CONVNCDUMP-JOB1\nbamboo_planRepository_1_name=converters-ncdump\nbamboo_buildKey=POL-CONVNCDUMP-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=converters-ncdump\nbamboo_repository_145064016_revision_number=14ed88c7635a8552680cd5574b4a5809db41aa3d\nbamboo_planRepository_name=converters-ncdump\nbamboo_buildNumber=9\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/POL-CONVNCDUMP-JOB1-9\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/pol/converters-ncdump.git\nbamboo_repository_145064016_branch_name=master\nbamboo_agentId=140673028\nbamboo_planName=Polyglot - converters-ncdump\nbamboo_shortPlanKey=CONVNCDUMP\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_shortJobKey=JOB1\nbamboo_repository_145064016_git_username=\nbamboo_planRepository_revision=14ed88c7635a8552680cd5574b4a5809db41aa3d\nbamboo_buildTimeStamp=2018-10-05T14:29:32.928-05:00\nbamboo_repository_previous_revision_number=14ed88c7635a8552680cd5574b4a5809db41aa3d\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_planRepository_previousRevision=14ed88c7635a8552680cd5574b4a5809db41aa3d\nbamboo_repository_git_branch=master\nbamboo_buildResultKey=POL-CONVNCDUMP-JOB1-9\nbamboo_repository_branch_name=master\nbamboo_buildPlanName=Polyglot - converters-ncdump - Default Job\nbamboo_planRepository_1_revision=14ed88c7635a8552680cd5574b4a5809db41aa3d\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=converters-ncdump\nbamboo_buildFailed=false\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_branch=master\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=14ed88c7635a8552680cd5574b4a5809db41aa3d\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_planRepository_branchDisplayName=master\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=master\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_repository_145064016_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/pol/converters-ncdump.git\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-144900253\nbamboo_repository_145064016_previous_revision_number=14ed88c7635a8552680cd5574b4a5809db41aa3d\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/pol/converters-ncdump.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/POL-CONVNCDUMP-JOB1\nbamboo_repository_145064016_name=converters-ncdump\nbamboo_planKey=POL-CONVNCDUMP\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/pol/converters-ncdump.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_1_branchName=master\n build 05-Oct-2018 14:34:14 docker build -t converters-ncdump . build 05-Oct-2018 14:34:14 Sending build context to Docker daemon 4.324MB build 05-Oct-2018 14:34:14 build 05-Oct-2018 14:34:14 Step 1/7 : FROM ncsapolyglot/softwareserver:latest build 05-Oct-2018 14:34:14 ---> 2b0face5a639 build 05-Oct-2018 14:34:14 Step 2/7 : MAINTAINER Kenton McHenry build 05-Oct-2018 14:34:14 ---> Using cache build 05-Oct-2018 14:34:14 ---> 6c3ac3e7b6b1 build 05-Oct-2018 14:34:14 Step 3/7 : USER root build 05-Oct-2018 14:34:14 ---> Using cache build 05-Oct-2018 14:34:14 ---> 6f830784011c build 05-Oct-2018 14:34:14 Step 4/7 : RUN apt-get update && apt-get -y install netcdf-bin && /bin/sed -i -e 's/^\([^#]*Scripts=\)/#\1/' -e 's/^#\(ShellScripts=\)/\1/' /home/polyglot/polyglot/SoftwareServer.conf && echo "ncdump" > /home/polyglot/polyglot/scripts/sh/.aliases.txt build 05-Oct-2018 14:34:15 ---> Running in fe9bc73067a5 build 05-Oct-2018 14:34:16 Get:1 http://deb.debian.org/debian sid InRelease [233 kB] build 05-Oct-2018 14:34:16 Ign:2 http://dl.bintray.com/siegfried/debian wheezy InRelease build 05-Oct-2018 14:34:16 Get:3 http://dl.bintray.com/siegfried/debian wheezy Release [1840 B] build 05-Oct-2018 14:34:16 Get:5 http://deb.debian.org/debian sid/main amd64 Packages.diff/Index [27.9 kB] build 05-Oct-2018 14:34:16 Get:6 http://deb.debian.org/debian sid/main amd64 Packages 2018-10-01-2032.43.pdiff [24.0 kB] build 05-Oct-2018 14:34:17 Get:7 http://deb.debian.org/debian sid/main amd64 Packages 2018-10-02-0209.37.pdiff [51.2 kB] build 05-Oct-2018 14:34:17 Get:8 http://deb.debian.org/debian sid/main amd64 Packages 2018-10-02-0814.43.pdiff [28.6 kB] build 05-Oct-2018 14:34:17 Get:9 http://deb.debian.org/debian sid/main amd64 Packages 2018-10-02-1418.59.pdiff [40.4 kB] build 05-Oct-2018 14:34:17 Get:10 http://deb.debian.org/debian sid/main amd64 Packages 2018-10-02-2007.45.pdiff [18.0 kB] build 05-Oct-2018 14:34:17 Get:11 http://deb.debian.org/debian sid/main amd64 Packages 2018-10-03-0209.01.pdiff [23.5 kB] build 05-Oct-2018 14:34:17 Get:12 http://deb.debian.org/debian sid/main amd64 Packages 2018-10-03-0809.27.pdiff [18.8 kB] build 05-Oct-2018 14:34:17 Get:13 http://deb.debian.org/debian sid/main amd64 Packages 2018-10-03-1407.54.pdiff [23.8 kB] build 05-Oct-2018 14:34:17 Get:14 http://deb.debian.org/debian sid/main amd64 Packages 2018-10-03-2007.42.pdiff [20.2 kB] build 05-Oct-2018 14:34:17 Get:15 http://deb.debian.org/debian sid/main amd64 Packages 2018-10-04-0207.48.pdiff [53.2 kB] build 05-Oct-2018 14:34:17 Get:16 http://deb.debian.org/debian sid/main amd64 Packages 2018-10-04-0808.51.pdiff [21.6 kB] build 05-Oct-2018 14:34:17 Get:17 http://deb.debian.org/debian sid/main amd64 Packages 2018-10-04-1416.47.pdiff [10.9 kB] build 05-Oct-2018 14:34:17 Get:18 http://deb.debian.org/debian sid/main amd64 Packages 2018-10-04-2010.56.pdiff [31.0 kB] build 05-Oct-2018 14:34:17 Get:19 http://deb.debian.org/debian sid/main amd64 Packages 2018-10-05-0210.51.pdiff [15.6 kB] build 05-Oct-2018 14:34:17 Get:20 http://deb.debian.org/debian sid/main amd64 Packages 2018-10-05-0812.37.pdiff [5086 B] build 05-Oct-2018 14:34:17 Get:21 http://deb.debian.org/debian sid/main amd64 Packages 2018-10-05-1412.48.pdiff [38.5 kB] build 05-Oct-2018 14:34:17 Get:21 http://deb.debian.org/debian sid/main amd64 Packages 2018-10-05-1412.48.pdiff [38.5 kB] build 05-Oct-2018 14:34:18 Fetched 687 kB in 2s (357 kB/s) build 05-Oct-2018 14:34:19 Reading package lists... build 05-Oct-2018 14:34:20 Reading package lists... build 05-Oct-2018 14:34:20 Building dependency tree... build 05-Oct-2018 14:34:20 Reading state information... build 05-Oct-2018 14:34:20 The following additional packages will be installed: build 05-Oct-2018 14:34:20 gcc-8-base libaec0 libcurl3-gnutls libgcc1 libgfortran5 libhdf5-100 build 05-Oct-2018 14:34:20 libnetcdf13 libquadmath0 libstdc++6 libsz2 build 05-Oct-2018 14:34:20 The following NEW packages will be installed: build 05-Oct-2018 14:34:20 libaec0 libcurl3-gnutls libgfortran5 libhdf5-100 libnetcdf13 libquadmath0 build 05-Oct-2018 14:34:20 libsz2 netcdf-bin build 05-Oct-2018 14:34:20 The following packages will be upgraded: build 05-Oct-2018 14:34:20 gcc-8-base libgcc1 libstdc++6 build 05-Oct-2018 14:34:20 3 upgraded, 8 newly installed, 0 to remove and 42 not upgraded. build 05-Oct-2018 14:34:20 Need to get 3568 kB of archives. build 05-Oct-2018 14:34:20 After this operation, 9935 kB of additional disk space will be used. build 05-Oct-2018 14:34:20 Get:1 http://deb.debian.org/debian sid/main amd64 gcc-8-base amd64 8.2.0-7 [187 kB] build 05-Oct-2018 14:34:20 Get:2 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 8.2.0-7 [394 kB] build 05-Oct-2018 14:34:20 Get:3 http://deb.debian.org/debian sid/main amd64 libgcc1 amd64 1:8.2.0-7 [40.7 kB] build 05-Oct-2018 14:34:20 Get:4 http://deb.debian.org/debian sid/main amd64 libaec0 amd64 1.0.2-1 [20.1 kB] build 05-Oct-2018 14:34:20 Get:5 http://deb.debian.org/debian sid/main amd64 libcurl3-gnutls amd64 7.61.0-1 [316 kB] build 05-Oct-2018 14:34:20 Get:6 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 8.2.0-7 [133 kB] build 05-Oct-2018 14:34:20 Get:7 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 8.2.0-7 [581 kB] build 05-Oct-2018 14:34:20 Get:8 http://deb.debian.org/debian sid/main amd64 libsz2 amd64 1.0.2-1 [6676 B] build 05-Oct-2018 14:34:20 Get:9 http://deb.debian.org/debian sid/main amd64 libhdf5-100 amd64 1.10.0-patch1+docs-4+b2 [1266 kB] build 05-Oct-2018 14:34:21 Get:10 http://deb.debian.org/debian sid/main amd64 libnetcdf13 amd64 1:4.6.1-3 [394 kB] build 05-Oct-2018 14:34:21 Get:11 http://deb.debian.org/debian sid/main amd64 netcdf-bin amd64 1:4.6.1-3 [230 kB] build 05-Oct-2018 14:34:21 debconf: delaying package configuration, since apt-utils is not installed build 05-Oct-2018 14:34:22 Fetched 3568 kB in 1s (3335 kB/s) build 05-Oct-2018 14:34:22 (Reading database ... build 05-Oct-2018 14:34:22 (Reading database ... 5% build 05-Oct-2018 14:34:22 (Reading database ... 10% build 05-Oct-2018 14:34:22 (Reading database ... 15% build 05-Oct-2018 14:34:22 (Reading database ... 20% build 05-Oct-2018 14:34:22 (Reading database ... 25% build 05-Oct-2018 14:34:22 (Reading database ... 30% build 05-Oct-2018 14:34:22 (Reading database ... 35% build 05-Oct-2018 14:34:22 (Reading database ... 40% build 05-Oct-2018 14:34:22 (Reading database ... 45% build 05-Oct-2018 14:34:22 (Reading database ... 50% build 05-Oct-2018 14:34:22 (Reading database ... 55% build 05-Oct-2018 14:34:22 (Reading database ... 60% build 05-Oct-2018 14:34:22 (Reading database ... 65% build 05-Oct-2018 14:34:22 (Reading database ... 70% build 05-Oct-2018 14:34:22 (Reading database ... 75% build 05-Oct-2018 14:34:22 (Reading database ... 80% build 05-Oct-2018 14:34:22 (Reading database ... 85% build 05-Oct-2018 14:34:22 (Reading database ... 90% build 05-Oct-2018 14:34:22 (Reading database ... 95% build 05-Oct-2018 14:34:22 (Reading database ... 100% build 05-Oct-2018 14:34:22 (Reading database ... 19838 files and directories currently installed.) build 05-Oct-2018 14:34:22 Preparing to unpack .../gcc-8-base_8.2.0-7_amd64.deb ... build 05-Oct-2018 14:34:22 Unpacking gcc-8-base:amd64 (8.2.0-7) over (8.2.0-4) ... build 05-Oct-2018 14:34:23 Setting up gcc-8-base:amd64 (8.2.0-7) ... build 05-Oct-2018 14:34:24 (Reading database ... build 05-Oct-2018 14:34:24 (Reading database ... 5% build 05-Oct-2018 14:34:24 (Reading database ... 10% build 05-Oct-2018 14:34:24 (Reading database ... 15% build 05-Oct-2018 14:34:24 (Reading database ... 20% build 05-Oct-2018 14:34:24 (Reading database ... 25% build 05-Oct-2018 14:34:24 (Reading database ... 30% build 05-Oct-2018 14:34:24 (Reading database ... 35% build 05-Oct-2018 14:34:24 (Reading database ... 40% build 05-Oct-2018 14:34:24 (Reading database ... 45% build 05-Oct-2018 14:34:24 (Reading database ... 50% build 05-Oct-2018 14:34:24 (Reading database ... 55% build 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database ... 15% build 05-Oct-2018 14:34:26 (Reading database ... 20% build 05-Oct-2018 14:34:26 (Reading database ... 25% build 05-Oct-2018 14:34:26 (Reading database ... 30% build 05-Oct-2018 14:34:26 (Reading database ... 35% build 05-Oct-2018 14:34:26 (Reading database ... 40% build 05-Oct-2018 14:34:26 (Reading database ... 45% build 05-Oct-2018 14:34:26 (Reading database ... 50% build 05-Oct-2018 14:34:26 (Reading database ... 55% build 05-Oct-2018 14:34:26 (Reading database ... 60% build 05-Oct-2018 14:34:26 (Reading database ... 65% build 05-Oct-2018 14:34:26 (Reading database ... 70% build 05-Oct-2018 14:34:26 (Reading database ... 75% build 05-Oct-2018 14:34:26 (Reading database ... 80% build 05-Oct-2018 14:34:26 (Reading database ... 85% build 05-Oct-2018 14:34:26 (Reading database ... 90% build 05-Oct-2018 14:34:26 (Reading database ... 95% build 05-Oct-2018 14:34:26 (Reading database ... 100% build 05-Oct-2018 14:34:26 (Reading database ... 19838 files and directories currently installed.) build 05-Oct-2018 14:34:26 Preparing to unpack .../libgcc1_1%3a8.2.0-7_amd64.deb ... build 05-Oct-2018 14:34:27 Unpacking libgcc1:amd64 (1:8.2.0-7) over (1:8.2.0-4) ... build 05-Oct-2018 14:34:27 Setting up libgcc1:amd64 (1:8.2.0-7) ... build 05-Oct-2018 14:34:28 Selecting previously unselected package libaec0:amd64. build 05-Oct-2018 14:34:28 (Reading database ... build 05-Oct-2018 14:34:28 (Reading database ... 5% build 05-Oct-2018 14:34:28 (Reading database ... 10% build 05-Oct-2018 14:34:28 (Reading database ... 15% build 05-Oct-2018 14:34:28 (Reading database ... 20% build 05-Oct-2018 14:34:28 (Reading database ... 25% build 05-Oct-2018 14:34:28 (Reading database ... 30% build 05-Oct-2018 14:34:28 (Reading database ... 35% build 05-Oct-2018 14:34:28 (Reading database ... 40% build 05-Oct-2018 14:34:28 (Reading database ... 45% build 05-Oct-2018 14:34:28 (Reading database ... 50% build 05-Oct-2018 14:34:28 (Reading database ... 55% build 05-Oct-2018 14:34:28 (Reading database ... 60% build 05-Oct-2018 14:34:28 (Reading database ... 65% build 05-Oct-2018 14:34:28 (Reading database ... 70% build 05-Oct-2018 14:34:28 (Reading database ... 75% build 05-Oct-2018 14:34:28 (Reading database ... 80% build 05-Oct-2018 14:34:28 (Reading database ... 85% build 05-Oct-2018 14:34:28 (Reading database ... 90% build 05-Oct-2018 14:34:28 (Reading database ... 95% build 05-Oct-2018 14:34:28 (Reading database ... 100% build 05-Oct-2018 14:34:28 (Reading database ... 19838 files and directories currently installed.) build 05-Oct-2018 14:34:28 Preparing to unpack .../0-libaec0_1.0.2-1_amd64.deb ... build 05-Oct-2018 14:34:28 Unpacking libaec0:amd64 (1.0.2-1) ... build 05-Oct-2018 14:34:29 Selecting previously unselected package libcurl3-gnutls:amd64. build 05-Oct-2018 14:34:29 Preparing to unpack .../1-libcurl3-gnutls_7.61.0-1_amd64.deb ... build 05-Oct-2018 14:34:30 Unpacking libcurl3-gnutls:amd64 (7.61.0-1) ... build 05-Oct-2018 14:34:31 Selecting previously unselected package libquadmath0:amd64. build 05-Oct-2018 14:34:31 Preparing to unpack .../2-libquadmath0_8.2.0-7_amd64.deb ... build 05-Oct-2018 14:34:31 Unpacking libquadmath0:amd64 (8.2.0-7) ... build 05-Oct-2018 14:34:32 Selecting previously unselected package libgfortran5:amd64. build 05-Oct-2018 14:34:32 Preparing to unpack .../3-libgfortran5_8.2.0-7_amd64.deb ... build 05-Oct-2018 14:34:32 Unpacking libgfortran5:amd64 (8.2.0-7) ... build 05-Oct-2018 14:34:33 Selecting previously unselected package libsz2:amd64. build 05-Oct-2018 14:34:33 Preparing to unpack .../4-libsz2_1.0.2-1_amd64.deb ... build 05-Oct-2018 14:34:33 Unpacking libsz2:amd64 (1.0.2-1) ... build 05-Oct-2018 14:34:34 Selecting previously unselected package libhdf5-100:amd64. build 05-Oct-2018 14:34:34 Preparing to unpack .../5-libhdf5-100_1.10.0-patch1+docs-4+b2_amd64.deb ... build 05-Oct-2018 14:34:34 Unpacking libhdf5-100:amd64 (1.10.0-patch1+docs-4+b2) ... build 05-Oct-2018 14:34:35 Selecting previously unselected package libnetcdf13:amd64. build 05-Oct-2018 14:34:35 Preparing to unpack .../6-libnetcdf13_1%3a4.6.1-3_amd64.deb ... build 05-Oct-2018 14:34:35 Unpacking libnetcdf13:amd64 (1:4.6.1-3) ... build 05-Oct-2018 14:34:36 Selecting previously unselected package netcdf-bin. build 05-Oct-2018 14:34:36 Preparing to unpack .../7-netcdf-bin_1%3a4.6.1-3_amd64.deb ... build 05-Oct-2018 14:34:36 Unpacking netcdf-bin (1:4.6.1-3) ... build 05-Oct-2018 14:34:36 Setting up libquadmath0:amd64 (8.2.0-7) ... build 05-Oct-2018 14:34:37 Setting up libaec0:amd64 (1.0.2-1) ... build 05-Oct-2018 14:34:37 Setting up libcurl3-gnutls:amd64 (7.61.0-1) ... build 05-Oct-2018 14:34:38 Processing triggers for libc-bin (2.27-5) ... build 05-Oct-2018 14:34:38 Setting up libgfortran5:amd64 (8.2.0-7) ... build 05-Oct-2018 14:34:38 Setting up libsz2:amd64 (1.0.2-1) ... build 05-Oct-2018 14:34:39 Setting up libhdf5-100:amd64 (1.10.0-patch1+docs-4+b2) ... build 05-Oct-2018 14:34:39 Setting up libnetcdf13:amd64 (1:4.6.1-3) ... build 05-Oct-2018 14:34:39 Setting up netcdf-bin (1:4.6.1-3) ... build 05-Oct-2018 14:34:39 Processing triggers for libc-bin (2.27-5) ... build 05-Oct-2018 14:34:42 Removing intermediate container fe9bc73067a5 build 05-Oct-2018 14:34:42 ---> 9d5a7601fa32 build 05-Oct-2018 14:34:42 Step 5/7 : COPY ncdump_convert.sh /home/polyglot/polyglot/scripts/sh/ build 05-Oct-2018 14:34:42 ---> 68f5a35e5f10 build 05-Oct-2018 14:34:42 Step 6/7 : RUN chown polyglot /home/polyglot/polyglot/scripts/sh/ncdump_convert.sh && chmod +x /home/polyglot/polyglot/scripts/sh/ncdump_convert.sh build 05-Oct-2018 14:34:43 ---> Running in 2af3a894885c build 05-Oct-2018 14:34:45 Removing intermediate container 2af3a894885c build 05-Oct-2018 14:34:45 ---> 64a68ddcf231 build 05-Oct-2018 14:34:45 Step 7/7 : CMD ["softwareserver"] build 05-Oct-2018 14:34:45 ---> Running in ace6e565f231 build 05-Oct-2018 14:34:46 Removing intermediate container ace6e565f231 build 05-Oct-2018 14:34:46 ---> 7d7e394a412d build 05-Oct-2018 14:34:46 Successfully built 7d7e394a412d build 05-Oct-2018 14:34:46 Successfully tagged converters-ncdump:latest simple 05-Oct-2018 14:34:46 Finished task 'make container' with result: Success simple 05-Oct-2018 14:34:46 Starting task 'make push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' command 05-Oct-2018 14:34:46 Beginning to execute external process for build 'Polyglot - converters-ncdump - Default Job #9 (POL-CONVNCDUMP-JOB1-9)'\n ... running command line: \n/home/bamboo/bamboo-agent-home/temp/POL-CONVNCDUMP-JOB1-9-ScriptBuildTask-1727156054946799130.sh\n ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/POL-CONVNCDUMP-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=master\nbamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm\nbamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster\nbamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node\nbamboo_repository_145064016_git_branch=master\nbamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster\nbamboo_dependency_parent_0=POL-MAIN-174\nbamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster\nbamboo_dependency_parent_total=1\nbamboo_planRepository_1_branchDisplayName=master\nbamboo_repository_revision_number=14ed88c7635a8552680cd5574b4a5809db41aa3d\nbamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/POL-CONVNCDUMP-JOB1-9\nbamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build\nbamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/POL-CONVNCDUMP-JOB1\nbamboo_planRepository_1_name=converters-ncdump\nbamboo_buildKey=POL-CONVNCDUMP-JOB1\nbamboo_capability_system_os=linux\nbamboo_shortPlanName=converters-ncdump\nbamboo_repository_145064016_revision_number=14ed88c7635a8552680cd5574b4a5809db41aa3d\nbamboo_planRepository_name=converters-ncdump\nbamboo_buildNumber=9\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/POL-CONVNCDUMP-JOB1-9\nbamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/pol/converters-ncdump.git\nbamboo_repository_145064016_branch_name=master\nbamboo_agentId=140673028\nbamboo_planName=Polyglot - converters-ncdump\nbamboo_shortPlanKey=CONVNCDUMP\nbamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt\nbamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node\nbamboo_shortJobKey=JOB1\nbamboo_repository_145064016_git_username=\nbamboo_planRepository_revision=14ed88c7635a8552680cd5574b4a5809db41aa3d\nbamboo_buildTimeStamp=2018-10-05T14:29:32.928-05:00\nbamboo_repository_previous_revision_number=14ed88c7635a8552680cd5574b4a5809db41aa3d\nbamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm\nbamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1\nbamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_3=/home/bamboo/bamboo-agent-home/temp/POL-CONVNCDUMP-JOB1-9-ScriptBuildTask-2842111607623147122.sh\nbamboo_planRepository_previousRevision=14ed88c7635a8552680cd5574b4a5809db41aa3d\nbamboo_repository_git_branch=master\nbamboo_buildResultKey=POL-CONVNCDUMP-JOB1-9\nbamboo_repository_branch_name=master\nbamboo_buildPlanName=Polyglot - converters-ncdump - Default Job\nbamboo_planRepository_1_revision=14ed88c7635a8552680cd5574b4a5809db41aa3d\nbamboo_capability_system_builder_command_python3=/usr/bin/python3\nbamboo_repository_name=converters-ncdump\nbamboo_buildFailed=false\nbamboo_capability_system_docker_executable=/usr/bin/docker\nbamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt\nbamboo_planRepository_branch=master\nbamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir\nbamboo_capability_system_git_executable=/usr/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=14ed88c7635a8552680cd5574b4a5809db41aa3d\nbamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13\nbamboo_planRepository_branchDisplayName=master\nbamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs\nbamboo_planRepository_1_type=bbserver\nbamboo_planRepository_branchName=master\nbamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7\nbamboo_capability_system_hostname=buildserver-1\nbamboo_repository_145064016_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/pol/converters-ncdump.git\nbamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_software_mongo=/usr/bin/mongo\nbamboo_plan_storageTag=plan-144900253\nbamboo_repository_145064016_previous_revision_number=14ed88c7635a8552680cd5574b4a5809db41aa3d\nbamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs\nbamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl\nbamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=bbserver\nbamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/pol/converters-ncdump.git\nbamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node\nbamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4\nbamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9\nbamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp\nbamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/POL-CONVNCDUMP-JOB1\nbamboo_repository_145064016_name=converters-ncdump\nbamboo_planKey=POL-CONVNCDUMP\nbamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/pol/converters-ncdump.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66\nbamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41\nbamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh\nbamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60\nbamboo_planRepository_1_branchName=master\n build 05-Oct-2018 14:34:46 docker build -t converters-ncdump . build 05-Oct-2018 14:34:46 Sending build context to Docker daemon 4.324MB build 05-Oct-2018 14:34:46 build 05-Oct-2018 14:34:46 Step 1/7 : FROM ncsapolyglot/softwareserver:latest build 05-Oct-2018 14:34:46 ---> 2b0face5a639 build 05-Oct-2018 14:34:46 Step 2/7 : MAINTAINER Kenton McHenry build 05-Oct-2018 14:34:46 ---> Using cache build 05-Oct-2018 14:34:46 ---> 6c3ac3e7b6b1 build 05-Oct-2018 14:34:46 Step 3/7 : USER root build 05-Oct-2018 14:34:46 ---> Using cache build 05-Oct-2018 14:34:46 ---> 6f830784011c build 05-Oct-2018 14:34:46 Step 4/7 : RUN apt-get update && apt-get -y install netcdf-bin && /bin/sed -i -e 's/^\([^#]*Scripts=\)/#\1/' -e 's/^#\(ShellScripts=\)/\1/' /home/polyglot/polyglot/SoftwareServer.conf && echo "ncdump" > /home/polyglot/polyglot/scripts/sh/.aliases.txt build 05-Oct-2018 14:34:46 ---> Using cache build 05-Oct-2018 14:34:46 ---> 9d5a7601fa32 build 05-Oct-2018 14:34:46 Step 5/7 : COPY ncdump_convert.sh /home/polyglot/polyglot/scripts/sh/ build 05-Oct-2018 14:34:46 ---> Using cache build 05-Oct-2018 14:34:46 ---> 68f5a35e5f10 build 05-Oct-2018 14:34:46 Step 6/7 : RUN chown polyglot /home/polyglot/polyglot/scripts/sh/ncdump_convert.sh && chmod +x /home/polyglot/polyglot/scripts/sh/ncdump_convert.sh build 05-Oct-2018 14:34:46 ---> Using cache build 05-Oct-2018 14:34:46 ---> 64a68ddcf231 build 05-Oct-2018 14:34:46 Step 7/7 : CMD ["softwareserver"] build 05-Oct-2018 14:34:46 ---> Using cache build 05-Oct-2018 14:34:46 ---> 7d7e394a412d build 05-Oct-2018 14:34:46 Successfully built 7d7e394a412d build 05-Oct-2018 14:34:46 Successfully tagged converters-ncdump:latest build 05-Oct-2018 14:34:46 #ifeq (latest, latest) build 05-Oct-2018 14:34:46 docker tag converters-ncdump ncsapolyglot/converters-ncdump:latest build 05-Oct-2018 14:34:46 docker push ncsapolyglot/converters-ncdump:latest build 05-Oct-2018 14:34:47 The push refers to repository [docker.io/ncsapolyglot/converters-ncdump] build 05-Oct-2018 14:34:47 3df3f40ad581: Preparing build 05-Oct-2018 14:34:47 6608d243ce9d: Preparing build 05-Oct-2018 14:34:47 92f693acd9b2: Preparing build 05-Oct-2018 14:34:47 d5b9faa0fd54: Preparing build 05-Oct-2018 14:34:47 dbde977a69f4: Preparing build 05-Oct-2018 14:34:47 810547d9a45a: Preparing build 05-Oct-2018 14:34:47 5aacc94700f8: Preparing build 05-Oct-2018 14:34:47 f2d156f7dd34: Preparing build 05-Oct-2018 14:34:47 a641f504caa7: Preparing build 05-Oct-2018 14:34:47 96aca4405d7d: Preparing build 05-Oct-2018 14:34:47 4f2e5aa83bb1: Preparing build 05-Oct-2018 14:34:47 acc0d089c92c: Preparing build 05-Oct-2018 14:34:47 1693f148d3f8: Preparing build 05-Oct-2018 14:34:47 4b5fffa509ea: Preparing build 05-Oct-2018 14:34:47 c861a17789be: Preparing build 05-Oct-2018 14:34:47 36f183b54972: Preparing build 05-Oct-2018 14:34:47 4f2e5aa83bb1: Waiting build 05-Oct-2018 14:34:47 810547d9a45a: Waiting build 05-Oct-2018 14:34:47 acc0d089c92c: Waiting build 05-Oct-2018 14:34:47 5aacc94700f8: Waiting build 05-Oct-2018 14:34:47 f2d156f7dd34: Waiting build 05-Oct-2018 14:34:47 1693f148d3f8: Waiting build 05-Oct-2018 14:34:47 a641f504caa7: Waiting build 05-Oct-2018 14:34:47 4b5fffa509ea: Waiting build 05-Oct-2018 14:34:47 96aca4405d7d: Waiting build 05-Oct-2018 14:34:47 c861a17789be: Waiting build 05-Oct-2018 14:34:47 36f183b54972: Waiting build 05-Oct-2018 14:34:47 dbde977a69f4: Mounted from ncsapolyglot/converters-txt2html build 05-Oct-2018 14:34:48 d5b9faa0fd54: Mounted from ncsapolyglot/converters-txt2html build 05-Oct-2018 14:34:48 810547d9a45a: Mounted from ncsapolyglot/converters-txt2html build 05-Oct-2018 14:34:48 5aacc94700f8: Mounted from ncsapolyglot/converters-txt2html build 05-Oct-2018 14:34:49 6608d243ce9d: Pushed build 05-Oct-2018 14:34:49 3df3f40ad581: Pushed build 05-Oct-2018 14:34:49 f2d156f7dd34: Mounted from ncsapolyglot/converters-txt2html build 05-Oct-2018 14:34:49 a641f504caa7: Mounted from ncsapolyglot/converters-txt2html build 05-Oct-2018 14:34:50 96aca4405d7d: Mounted from ncsapolyglot/converters-txt2html build 05-Oct-2018 14:34:50 4f2e5aa83bb1: Mounted from ncsapolyglot/converters-txt2html build 05-Oct-2018 14:34:50 acc0d089c92c: Mounted from ncsapolyglot/converters-txt2html build 05-Oct-2018 14:34:50 1693f148d3f8: Mounted from ncsapolyglot/converters-txt2html build 05-Oct-2018 14:34:51 4b5fffa509ea: Mounted from ncsapolyglot/converters-txt2html build 05-Oct-2018 14:34:51 c861a17789be: Mounted from ncsapolyglot/converters-txt2html build 05-Oct-2018 14:34:51 92f693acd9b2: Pushed build 05-Oct-2018 14:34:51 36f183b54972: Mounted from ncsapolyglot/converters-txt2html build 05-Oct-2018 14:34:53 latest: digest: sha256:b58b8be88f10de5fd5a556205aed20fed2fabd307ffa33379f488e21e1f94d05 size: 3668 build 05-Oct-2018 14:34:53 #endif simple 05-Oct-2018 14:34:53 Finished task 'make push' with result: Success simple 05-Oct-2018 14:34:53 Running post build plugin 'Docker Container Cleanup' simple 05-Oct-2018 14:34:53 Running post build plugin 'NCover Results Collector' simple 05-Oct-2018 14:34:53 Running post build plugin 'Clover Results Collector' simple 05-Oct-2018 14:34:53 Running post build plugin 'npm Cache Cleanup' simple 05-Oct-2018 14:34:53 Running post build plugin 'Artifact Copier' simple 05-Oct-2018 14:34:53 Finalising the build... simple 05-Oct-2018 14:34:53 Stopping timer. simple 05-Oct-2018 14:34:53 Build POL-CONVNCDUMP-JOB1-9 completed. simple 05-Oct-2018 14:34:53 Running on server: post build plugin 'NCover Results Collector' simple 05-Oct-2018 14:34:53 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 05-Oct-2018 14:34:53 Running on server: post build plugin 'Clover Delta Calculator' simple 05-Oct-2018 14:34:54 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 05-Oct-2018 14:34:54 All post build plugins have finished simple 05-Oct-2018 14:34:54 Generating build results summary... simple 05-Oct-2018 14:34:54 Saving build results to disk... simple 05-Oct-2018 14:34:54 Logging substituted variables... simple 05-Oct-2018 14:34:54 Indexing build results... simple 05-Oct-2018 14:34:54 Finished building POL-CONVNCDUMP-JOB1-9.