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  • K. McHenry, J. Lee, M. Dietze, P. Kumar, B. Minsker, R. Marciano, L. Marini, R. Kooper, D. Mattson, "DIBBs Brown Dog, PaaS for SaaS for PaaS", XSEDE Reproducibility Workshop, 2014 (PDF)
  • K. McHenry, R. Kooper, P. Bajcsy, "Towards a Universal, Quantifiable, and Scalable File Format Converter", IEEE eScience, 2009 (PDF)
  • M. Ondrejcek, K. McHenry, P. Bajcsy, "The Conversion Software Registry", Microsoft eScience Workshop, 2010 (PDF)
  • L. Marini, R. Kooper, J. Futrelle, J. Plutchak, A. Craig, T. McLaren, J. Myers, "Medici: A Scalable Multimedia Environment for Research", Microsoft eScience Workshop, 2010, (PDF)
  • K. McHenry, R. Kooper, M. Ondrejcek, L. Marini, P. Bajcsy, "A Mosaic of Software", IEEE eScience, 2011 (PDF)
  • K. McHenry, M. Ondrejcek, L. Marini, R. Kooper, P. Bajcsy, "Towards a Universal Viewer for Digital Content", International Conference of Computer Science Executable Paper Workshop, 2011 (PDF)
  • K. McHenry, R. Kooper, L. Marini. M. Ondrejcek, "The ISDA Tools: Preserving 3D Digital Content", POCOS, 2011 (PDF)
  • J. Heard, R. Marciano, "A System for Scalable Visualization of Geographic Archival Records", Large Data Analysis and Visualization, 2011 (PDF)
  • L. Diesendruck, L. Marini, R. Kooper, M. Kejriwal, K. McHenry, "A Framework to Access Handwritten Information within Large Digitized Paper Collections", IEEE eScience, 2012 (PDF)
  • L. Diesendruck, L. Marini, R. Kooper, M. Kejriwal, K. McHenry, "Digitization and Search: A Non-Traditional Use of HPC", IEEE eScience Workshop on Extending High Performance Computing Beyond its Traditional User Communities, 2012 (PDF)
  • L. Marini, P. Bajcsy, S. Padhy, A. Vandercreme, R. Kooper, B. Long, M. Ondrejcek, P. Saba, D. Bonnie, J. Chalfoun, K. McHenry, "Versus: A Framework for General Content-Based Comparisons", IEEE eScience 2012, (PDF)
  • L. Diesendruck, R. Kooper, L. Marini, K. McHenry, "Using Lucene to Index and Search the Digitized 1940 US Census", XSEDE, 2013 (PDF)


  • M. Dietze, D. LeBauer, R. Kooper, "On improving the communication between models and data", Plant, Cell, and Environment, 2013 (PDF)
  • D. LeBauer, D. Wang, K. Richter, C. Davidson, M. Dietze, "Feedbacks between measurements and ecosystem models", Ecological Monographs, 2013 (PDF)
  • J. Rhemtulla, D. Mladenoff, M. Clayton, "Historical forest baselines reveal potential for continued carbon sequestration", Proceedings of the National Academy of Sciences of the United States of America, 2009 (PDF)
  • L. Schulte, D. Mladenoff, "The original U.S. public land survey records: their use and limitations in reconstructing pre-European settlement vegetation, Journal of Forestry, 2001

Civil Engineering / Social Science

  • W. Sullivan, "Wellbeing and Green Spaces in Cities" (PDF)
  • W. Sullivan, C. Chang, "Mental Health and the Built Environment", Making Healthy Places: Designing and Building for Health, 2011 (PDF)
  • A. Taylor, F. Kuo, W. Sullivan, "Views of Nature and Self-Discipline: Evidence from Inner City Children", Journal of Environmental Psychology, 2002 (PDF)
  • F. Kuo, W. Sullivan, "Aggression and Violence in the Inner City", Environment and Behavior, 2001 (PDF)
  • Rai, Ankit, "Designing Green Stormwater Infrastructure for Hydrologic and Human Benefits: An Image-Based Machine Learning Approach", MS Thesis, U. of Illinois, 2013 (PDF)
  • "Collaborative Research: CyberSEES: Type 2: A New Framework for Crowd-Sourced Green Infrastructure Design" (PDF, References) (has good background and references on green infrastructure and the models we'll be using. We'll be leveraging this project in our use case)

  • S. Brantley, T. White, A. White, D. Sparks, D. Richter, K. Pregitzer, L. Derry, J. Chorover, O. Chadwick, R. April, S. Anderson, R. Amundson, "Frontiers in Exploration of the Critical Zone", Report of a workshop sponsored by the NSF, 2006 (PDF)
  • S. Banwart, J. Chorover, J. Cailardet, D. Sparks, T. White, S. Anderson, A. Aufdenkampe, S. Bernasconi, S. Brantley, O. Chadwick, W. Dietrich, C. Duffy, M. Goldhaber, K. Lehnert, N. Nikolaidis, K. Ragnarsdottir, "Sustaining Earth's Criticial Zone, Basic Science and Interdisciplinary Solutions for Global Challenges", 2013 (PDF)
  • "Discoveries in the Critical Zone: Where Life Meets Rock" (PDF)
  • P. Le, P. Kumar, D. Drewry, J. Quijano, "A Graphical User Interface for Numerical Modeling of Acclimation Responses of Vegetation to Climate Change", Computers & Geosciences, 2012 (PDF)
  • M. Killey, "Illinois' Ice Age Legacy", Illinois Geological Survey GeoScience Education Series, 1999 (PDF)
  • L. Keefer, E. Bauer, M. Markus, "Hydrological and Nutrient Monitoring of the Lake Decatur Watershed", Illinois State Water Survey Report, 2010 (PDF)
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