root@integration-1:~/biocaddie# Rscript scripts/compare_biocaddie.R test tfidf dir short
[1] "map 0.3349 0.3284 p= 0.7559"
[1] "ndcg 0.5525 0.544 p= 0.7086"
[1] "P_20 0.6433 0.6833 p= 0.1214"
[1] "ndcg_cut_20 0.5552 0.5923 p= 0.1694"
[1] "P_100 0.5007 0.5013 p= 0.4823"
[1] "ndcg_cut_100 0.4899 0.5099 p= 0.1197"
root@integration-1:~/biocaddie# Rscript scripts/compare_biocaddie.R test tfidf jm short
[1] "map 0.3349 0.2988 p= 0.9055"
[1] "ndcg 0.5525 0.5242 p= 0.8989"
[1] "P_20 0.6433 0.6667 p= 0.2459"
[1] "ndcg_cut_20 0.5552 0.5829 p= 0.2626"
[1] "P_100 0.5007 0.4747 p= 0.8572"
[1] "ndcg_cut_100 0.4899 0.4974 p= 0.3891"
root@integration-1:~/biocaddie# Rscript scripts/compare_biocaddie.R test tfidf two short
[1] "map 0.3349 0.3261 p= 0.7614"
[1] "ndcg 0.5525 0.545 p= 0.697"
[1] "P_20 0.6433 0.6667 p= 0.278"
[1] "ndcg_cut_20 0.5552 0.5549 p= 0.503"
[1] "P_100 0.5007 0.4853 p= 0.7312"
[1] "ndcg_cut_100 0.4899 0.4906 p= 0.4834"
root@integration-1:~/biocaddie# Rscript scripts/compare.R test tfidf okapi short
[1] "map 0.3349 0.342 p= 0.3034"
[1] "ndcg 0.5525 0.5845 p= 0.0587"
[1] "P_20 0.6433 0.68 p= 0.0553"
[1] "ndcg_cut_20 0.5552 0.5597 p= 0.3991"
[1] "P_100 0.5007 0.5067 p= 0.3782"
[1] "ndcg_cut_100 0.4899 0.5143 p= 0.0658"
root@integration-1:~/biocaddie# ^C
root@integration-1:~/biocaddie# Rscript scripts/compare_biocaddie.R test tfidf rm3 short
[1] "map 0.3349 0.3379 p= 0.421"
[1] "ndcg 0.5525 0.5717 p= 0.095"
[1] "P_20 0.6433 0.6833 p= 0.0692"
[1] "ndcg_cut_20 0.5552 0.6031 p= 0.0494"
[1] "P_100 0.5007 0.5113 p= 0.3605"
[1] "ndcg_cut_100 0.4899 0.5249 p= 0.0464"
root@integration-1:~/biocaddie# Rscript scripts/compare_biocaddie.R test tfidf rm3-stopped short
[1] "map 0.3349 0.3417 p= 0.3108"
[1] "ndcg 0.5525 0.5827 p= 0.0291"
[1] "P_20 0.6433 0.68 p= 0.0716"
[1] "ndcg_cut_20 0.5552 0.5807 p= 0.1285"
[1] "P_100 0.5007 0.506 p= 0.3918"
[1] "ndcg_cut_100 0.4899 0.5134 p= 0.1582"
root@integration-1:~/biocaddie# Rscript scripts/compare_biocaddie.R test tfidf pubmed short
[1] "map 0.3349 0.3534 p= 0.1925"
[1] "ndcg 0.5525 0.6009 p= 0.021"
[1] "P_20 0.6433 0.6567 p= 0.3584"
[1] "ndcg_cut_20 0.5552 0.5732 p= 0.2874"
[1] "P_100 0.5007 0.5207 p= 0.2671"
[1] "ndcg_cut_100 0.4899 0.5074 p= 0.2195"
root@integration-1:~/biocaddie# Rscript scripts/compare_biocaddie.R test tfidf wikipedia short
[1] "map 0.3349 0.3553 p= 0.2057"
[1] "ndcg 0.5525 0.6029 p= 0.0375"
[1] "P_20 0.6433 0.6767 p= 0.2351"
[1] "ndcg_cut_20 0.5552 0.5503 p= 0.5459"
[1] "P_100 0.5007 0.4893 p= 0.6391"
[1] "ndcg_cut_100 0.4899 0.4981 p= 0.3876"
root@integration-1:~/biocaddie# Rscript scripts/compare_biocaddie.R test tfidf sdm short
[1] "map 0.3349 0.3372 p= 0.4499"
[1] "ndcg 0.5525 0.5715 p= 0.1623"
[1] "P_20 0.6433 0.6067 p= 0.7864"
[1] "ndcg_cut_20 0.5552 0.5526 p= 0.5318"
[1] "P_100 0.5007 0.512 p= 0.3228"
[1] "ndcg_cut_100 0.4899 0.5067 p= 0.1812"
root@integration-1:~/biocaddie# Rscript scripts/compare_biocaddie.R test tfidf fdm short
[1] "map 0.3349 0.3418 p= 0.3386"
[1] "ndcg 0.5525 0.5818 p= 0.0721"
[1] "P_20 0.6433 0.6767 p= 0.1646"
[1] "ndcg_cut_20 0.5552 0.5707 p= 0.3084"
[1] "P_100 0.5007 0.5047 p= 0.436"
[1] "ndcg_cut_100 0.4899 0.5063 p= 0.1918"
root@integration-1:~/biocaddie# Rscript scripts/compare_biocaddie.R test tfidf okapi-exp short
[1] "map 0.3349 0.3725 p= 0.1483"
[1] "ndcg 0.5525 0.6023 p= 0.1124"
[1] "P_20 0.6433 0.6633 p= 0.1803"
[1] "ndcg_cut_20 0.5552 0.6007 p= 0.0525"
[1] "P_100 0.5007 0.5413 p= 0.1181"
[1] "ndcg_cut_100 0.4899 0.5569 p= 0.0042"
root@integration-1:~/biocaddie# Rscript scripts/compare_biocaddie.R test tfidf dir-krovetz short
[1] "map 0.3349 0.3663 p= 0.0202"
[1] "ndcg 0.5525 0.6022 p= 0.0226"
[1] "P_20 0.6433 0.7033 p= 0.0428"
[1] "ndcg_cut_20 0.5552 0.6079 p= 0.0587"
[1] "P_100 0.5007 0.5173 p= 0.1919"
[1] "ndcg_cut_100 0.4899 0.5225 p= 0.0304"
root@integration-1:~/biocaddie# Rscript scripts/compare_biocaddie.R test tfidf rm3-krovetz short
[1] "map 0.3349 0.3604 p= 0.0904"
[1] "ndcg 0.5525 0.5809 p= 0.0356"
[1] "P_20 0.6433 0.7167 p= 0.0151"
[1] "ndcg_cut_20 0.5552 0.5788 p= 0.2086"
[1] "P_100 0.5007 0.4967 p= 0.5665"
[1] "ndcg_cut_100 0.4899 0.5368 p= 0.0337"
root@integration-1:~/biocaddie# Rscript scripts/compare_biocaddie.R test tfidf pubmed-krovetz short
[1] "map 0.3349 0.3841 p= 0.0267"
[1] "ndcg 0.5525 0.6225 p= 0.0095"
[1] "P_20 0.6433 0.7067 p= 0.0374"
[1] "ndcg_cut_20 0.5552 0.5831 p= 0.2319"
[1] "P_100 0.5007 0.5353 p= 0.122"
[1] "ndcg_cut_100 0.4899 0.5162 p= 0.1723"