ID (Extractor Name from config file, same as =
queue name) |
Programming Language |
Software |
OS |
Can be Dockerized? |
Assigned To |
Repo |
Author |
DEPLOYED |
ncsa.image.ocr |
Python |
Tesseract |
Linux |
|
Rui |
https://opensource.ncsa.illinois.edu/bi=
tbucket/projects/CATS/repos/extractors-cv/browse/ocr |
|
ncsa.cv.faces |
Python |
OpenCV |
Linux |
|
Rui |
https://opensource.ncsa.illinois.edu=
/bitbucket/projects/CATS/repos/extractors-cv/browse/opencv |
Liana |
ncsa.cv.eyes |
Python |
OpenCV |
Linux |
|
Rui |
https://opensource.ncsa.illinois.edu=
/bitbucket/projects/CATS/repos/extractors-cv/browse/opencv |
Liana |
ncsa.cv.closeups |
Python |
OpenCV |
Linux |
|
Rui |
https://opensource.ncsa.illinois.edu=
/bitbucket/projects/CATS/repos/extractors-cv/browse/opencv |
Liana |
ncsa.cv.profiles |
Python |
OpenCV |
Linux |
|
Rui |
https://opensource.ncsa.illinois.edu=
/bitbucket/projects/CATS/repos/extractors-cv/browse/opencv |
Liana |
ncsa.cel=
lprofiler.fluorescentcomet |
Python |
pymedici :q=
uestion: |
Windows |
No |
|
https://opensource.ncsa.illinoi=
s.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofiler |
Liana |
ncsa.cel=
lprofiler.fly |
Python |
|
Windows |
No |
|
https://opensource.ncsa.illinoi=
s.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofiler |
Liana |
ncsa.cellprofiler.human |
Python |
|
Windows |
No |
|
https://opensource.ncsa.illinoi=
s.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofiler |
Liana |
ncsa.cellprofiler.silvercomet |
Python |
|
Windows |
No |
|
https://opensource.ncsa.illinoi=
s.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofiler |
Liana |
ncsa.cellprofiler.speckle |
Python |
|
Windows |
No |
|
https://opensource.ncsa.illinoi=
s.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofiler |
Liana |
ncsa.cellprofiler.trackobject |
Python |
|
Windows |
No |
|
https://opensource.ncsa.illinoi=
s.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofiler |
Liana |
ncsa.cellprofiler.tumor |
Python |
|
Windows |
No |
|
https://opensource.ncsa.illinoi=
s.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofiler |
Liana |
ncsa.cellprofiler.yeast |
Python |
|
Windows |
No |
|
https://opensource.ncsa.illinoi=
s.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofiler |
Liana |
ncsa.image.sphog |
Python |
Matlab, mnist-sphog |
Linux |
|
|
https://open=
source.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse=
/handwritten/HandwrittenNumbers |
|
ncsa.image.caltech101 |
|
|
|
|
|
|
|
ncsa.bisque.histogram (notes: disa=
bled) |
Python |
|
Linux |
|
|
|
|
ncsa.bisque.metadata (notes: disab=
led) |
Python |
|
Linux |
|
|
|
|
census-section-segmentor |
Java |
|
Linux |
|
|
https://opensource.ncsa.illinois.edu=
/bitbucket/projects/CATS/repos/extractors-cv/browse/census |
Liana, Inna |
ncsa.cv.river |
Python |
OpenCV (pyth=
on), convert (from imagemagick), and Gdal |
Linux |
|
|
https://opensource.ncsa.illinois.edu/=
bitbucket/projects/CATS/repos/extractors-cv/browse/river |
Liana |
ncsa.geo.shpExtractor |
Python |
gdal |
Linux |
|
|
https://opensource.ncsa.illinois.edu/bitbu=
cket/projects/CATS/repos/extractors-geo/browse |
Jong Lee |
ncsa.geo.tiffExtractor |
Python |
gdal |
Linux |
|
|
https://opensource.ncsa.illinois.edu/bitbu=
cket/projects/CATS/repos/extractors-geo/browse |
Jong Lee |
ncsa.image.geotiff |
Python |
GDAL, Cython, numpy,
pygeoprocessing |
Linux |
|
Rui |
https://opensource.ncsa.illinois.edu/bitbucket/proje=
cts/CATS/repos/extractors-geotiff/browse |
Rui, Mostafa Elag |
ncsa.image.ponddetect |
Python |
Matlab |
Linux |
|
|
https://opensource.ncsa=
.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/feature_=
detection |
Marcus, Ankit |
ncsa.image.humanpref |
Python |
Matlab |
Linux |
|
|
https://opensource.ncsa.illinoi=
s.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/humanpref
| Marcus, Ankit |
ncsa.xml.greenindexroute, ncsa.=
csv.greenindexroute |
Python |
OpenCV |
Linux |
|
|
https://opensource.ncsa.illino=
is.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/greenroute<=
/td>
| Marcus |
ncsa.image.knn_numerals |
Python |
OpenCV |
Linux |
|
|
|
Marcus |
ncsa.audio.speech2text |
Java |
CMU Sphinx, ffmpeg, sox |
Linux |
|
|
https://opensource.ncsa=
.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/audio/sp=
eech2text |
Marcus |
ncsa.audio.preview |
Python |
|
|
|
Inna |
https://opensource.ncsa.ill=
inois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/audio/previe=
w |
|
ncsa.nlp.simplelanguage |
Python |
numpy |
|
|
Inna |
https://opensource.ncsa.ill=
inois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SimpleLanguag=
e |
Liana |
ncsa.nlp.simplesummary |
Python |
Natural Language Toolki=
t (NLTK) for Python, NLTK Data or at le=
ast: nltk.corpus,nltk.stem.porter and nltk.tokenize.punkt. |
|
|
|
https://opensource.ncsa.illi=
nois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SimpleSummary<=
/a> |
Liana |
ncsa.nlp.SNLPSentiment |
Java |
Stanford CoreNLP tool, java, maven |
|
|
|
https://openso=
urce.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/=
SNLP/SNLPSentimentExtractor |
Liana, Marcus(?) |
ncsa.nlp.wordtables |
Python |
requests, pika, <=
a class=3D"external-link" href=3D"http://sourceforge.net/projects/pywin32/"=
rel=3D"nofollow">win32com |
|
|
|
https://opensource.ncs=
a.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/WordTabl=
esExtractor |
Liana |
siegfried |
Python |
|
|
|
|
https://opensource.ncsa.illinois.edu=
/bitbucket/projects/CATS/repos/extractors-siegfried/browse |
Gregory Jansen |
ncsa.versus.image |
Java |
Versus |
Linux |
|
|
https://opensource.ncsa.illinois.edu/bi=
tbucket/projects/CATS/repos/extractors-versus/browse |
Kenton, Smruti |
ncsa.image.preview (note: check if=
really deployed. there is an extractor in Hosted VMs list with a similar n=
ame.) |
Python |
|
|
|
|
https://opensource.ncsa.ill=
inois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/image/previe=
w |
Rob, Sandeep |
ncsa.pdf.preview (note: chec=
k if really deployed. there is an extractor in Hosted VMs list with a simil=
ar name.) |
Python |
|
|
|
|
https://opensource.ncsa.illin=
ois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/pdf/preview |
Rob |
ncsa.video.preview (note: ch=
eck if really deployed. there is an extractor in Hosted VMs list with a sim=
ilar name.) |
Python |
|
|
|
|
https://opensource.ncsa.ill=
inois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/video/previe=
w |
Rob |
NOT DEPLOYED |
ncsa.image.digitpy |
Python |
opencv |
|
|
|
https://opens=
ource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/=
handwritten/SimpleDigitPython |
|
ncsa.cv.pdfimages |
|
pdfimages, from&n=
bsp;poppler-utils |
|
|
|
https://opensource.ncsa.illinois.ed=
u/bitbucket/projects/CATS/repos/extractors-cv/browse/poppler |
|
ncsa.cv.caltech101 |
Python |
Matlab and&n=
bsp;VLFeat |
64-bit Mac OS |
|
|
https://opensource.ncsa.illinois.edu=
/bitbucket/projects/CATS/repos/extractors-cv/browse/vlfeat |
|
dbpedia |
Python |
Natural Language Toolkit (NLT=
K) and rdflib. |
|
|
|
https://opensource.ncsa.illinois.edu/b=
itbucket/projects/CATS/repos/extractors-dbpedia/browse |
|
digest |
Python |
|
|
|
|
https://opensource.ncsa.illinois.edu/bi=
tbucket/projects/CATS/repos/extractors-digest/browse |
|
ncsa.hpc |
Python |
|
|
|
|
https://opensource.ncsa.illinois.edu/bitbu=
cket/projects/CATS/repos/extractors-hpc/browse |
|
LSVA |
Java |
|
|
|
|
https://opensource.ncsa.illinois.edu/bitb=
ucket/projects/CATS/repos/extractors-lsva/browse |
Liana, Constantinos |
LSVA integrated |
|
|
|
|
|
https://opensource.ncsa.illino=
is.edu/bitbucket/projects/CATS/repos/extractors-lsva-integrated/browse<=
/td>
|
|
ncsa.movieslice |
Python |
|
|
|
|
https://opensource.ncsa.illinois.ed=
u/bitbucket/projects/CATS/repos/extractors-movieslice/browse |
Sandeep |
mri2mesh |
Python |
pymedici, subprocess, loggin=
g, os, numpy, shutil, zipfile |
|
|
|
https://opensource.ncsa.illinois.=
edu/bitbucket/projects/CATS/repos/extractors-mri/browse/mri2mesh |
Marcus |
msc-ChemCBCExtractor |
Python |
requests, pika, openpyxl, xlrd, pymongo |
Linux |
|
|
https://opensource.ncsa.i=
llinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/ChemCBCExtr=
actor |
Yan |
msc-IsletExtractor |
Python |
requests, pika, openpyxl, xlrd, pymongo |
Linux |
|
|
https://opensource.ncsa.ill=
inois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/IsletExtracto=
r |
Yan |
msc-MonitorExtractor |
Python |
requests, pika, openpyxl, xlrd, pymongo |
Linux |
|
|
https://opensource.ncsa.i=
llinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/MonitorExtr=
actor |
Yan |
ncsa.msc.dailymonitor |
Python |
requests, <=
strong>pika, openpyxl, xlrd, pymongo |
|
|
not used |
https://opensource.ncs=
a.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/OldMonit=
orExtractor |
Ashwini |
msc-PhenotypeExtractor |
Python |
requests, pika, openpyxl, xlrd, pymongo
| Linux |
|
|
https://opensource.ncsa=
.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/Phenotype=
Extractor |
Yan |
ncsa.nlp.SNLP |
Java |
Stanford CoreNLP tool, java, maven=
td>
| |
|
|
https://opensource.ncsa=
.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SNLP/SNLP=
Extractor |
Liana |
ncsa.nlp.tika |
Python |
Tika project page, pym=
edici |
|
|
|
https://opensource.ncsa.illinois.edu/=
bitbucket/projects/CATS/repos/extractors-nlp/browse/tika |
Liana |
person-detector |
Python |
MATLAB, FFMPEG, requests and=
pika |
|
|
|
https://opensource.ncsa=
.illinois.edu/bitbucket/projects/CATS/repos/extractors-person-detector/brow=
se/python |
Sandeep |
ncsa.person-tracker |
Python |
python, MATLAB, FFMPEG =
requests and pika |
|
|
|
https://opensource.ncsa=
.illinois.edu/bitbucket/projects/CATS/repos/extractors-person-tracking/brow=
se/python |
Sandeep |
terra.plantcv |
Python |
pika
requests
wheel |
|
|
|
https://opensource.ncsa.illinois.edu/b=
itbucket/projects/CATS/repos/extractors-plantcv/browse |
Yan |
medici_PTM_thumbnails |
Java |
|
|
|
|
https://opensource.n=
csa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/PTMThu=
mbnailExtractor |
Constantinos |
medici_PTM_metadata |
Java |
|
|
|
|
https://opensource.nc=
sa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/PTMMeta=
dataExtractor |
Constantinos |
Name not clear PtmMetadat=
a(?) |
Java |
|
|
|
|
https://opensource.ncsa.illino=
is.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/PTMMetadata<=
/td>
| Constantinos |
medici_ptm_maps |
Java |
|
|
|
|
https://opensource.ncsa.i=
llinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/PTMMapsExtr=
actor |
Constantinos |
medici_ptm_3d |
Java |
|
|
|
|
https://opensource.ncsa.ill=
inois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/PTM3DExtracto=
r |
Constantinos |
medici_images_ptm |
Java |
|
|
|
|
https://opensource.ncsa=
.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/ImagesPTM=
Extractor |
Constantinos |
extractors-rabbitmq (look like examples) |
|
|
|
|
|
https://opensource.ncsa.illinois.edu/=
bitbucket/projects/CATS/repos/extractors-rabbitmq/browse |
|
Name not clear extractors-seabird/=
|
Scala |
|
|
|
|
https://opensource.ncsa.illinois.edu/b=
itbucket/projects/CATS/repos/extractors-seabird/browse |
Luigi |
medici_3d_x3d (one of extractors-3d)
| Java |
|
|
|
|
https://opensource.ncsa.il=
linois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/ObjJSONExtrac=
tor |
Constantinos |
medici_3d_obj_merger (one of extractors-3d<=
/a>) |
Java |
|
|
|
|
https://opensource.ncsa.=
illinois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/OBJMergerEx=
tractor |
Constantinos |
medici_oni (one of extractors-3d) |
Java |
|
|
|
|
https://opensource.ncsa.illino=
is.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/OniExtractor<=
/td>
| Constantinos |
medici_ply_obj (one of extract=
ors-3d) |
Java |
|
|
|
|
https://opensource.ncsa.ill=
inois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/PlyObjExtracto=
r |
Constantinos |
medici_3d_metadata (one of <=
/span>ext=
ractors-3d) |
Java |
|
|
|
|
https://opensource.=
ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/ThreeD=
MetadataExtractor |
Constantinos |
medici_x3d_html (one of extrac=
tors-3d) |
Java |
|
|
|
|
https://opensource.ncsa.il=
linois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/X3DhtmlExtrac=
tor |
Constantinos |
ncsa.arcgis.landsat7mosaic |
Python |
ArcGIS |
Windows |
No |
|
https://opensource.ncsa.ill=
inois.edu/bitbucket/projects/CATS/repos/extractors-bd-cz/browse/ndviextract=
or |
Smruti |
ncsa.arcgis.floodplain |
Python |
ArcGIS |
Windows |
No |
|
https://openso=
urce.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bd-cz/brows=
e/terex_floodplain/config.py |
Smruti |
medici_book |
Java |
|
|
|
|
https://opensource.=
ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-books/browse/Boo=
kPreviewExtractor |
Theerasit Issaranon |
medici_image_pyramid |
Java |
|
|
|
|
htt=
ps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-=
books/browse/ImagePreviewPyramidExtractor-shebook |
Theerasit Issaranon |
shebook |
Java |
|
|
|
|
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/=
repos/extractors-books/browse/SheBookPreviewExtractor/src/BookPreviewExtrac=
tor https=
://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bo=
oks/browse/SheBookPreviewExtractor/src/bookpreviewextractor |
Theerasit Issaranon |
lsva-cedd |
Java |
|
|
|
|
https://opensource.ncsa.illinois.edu/bitb=
ucket/projects/CATS/repos/extractors-cedd/browse |
Constantinos |
ncsa.cinemetrics |
Python |
|
|
|
|
https://opensource.ncsa.illinois.e=
du/bitbucket/projects/CATS/repos/extractors-cinemetrics/browse |
Constantinos |
ncsa.image.metadata |
Python |
|
|
|
|
https://opensource.ncsa.il=
linois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/image/metad=
ata |
Max. Rob |
ncsa.debod.segmentor |
|
|
|
|
|
https://opensource.ncsa.illinoi=
s.edu/bitbucket/projects/DEBOD/repos/extractors-cellsegmentor/browse
| |
ncsa.image.dmp |
|
|
|
|
|
https://opensource.ncsa.illinois.edu=
/bitbucket/projects/DEBOD/repos/extractors-debod/browse https://opensou=
rce.ncsa.illinois.edu/bitbucket/projects/DEBOD/repos/extractors-dmp/browse<=
/a> |
|
ncsa.image.sphog.debod |
|
|
|
|
|
https://opensource.ncsa.i=
llinois.edu/bitbucket/projects/DEBOD/repos/extractors-handwrittendecimals/b=
rowse |
|
ncsa.image.iarp_remove_circle
|
|
|
|
|
|
https://opensource=
.ncsa.illinois.edu/bitbucket/projects/IARP/repos/image_fetcher/browse/extra=
ctors/remove_circle |
Marcus |
ncsa.cv.meangrey |
|
|
|
|
|
https://opensource.ncs=
a.illinois.edu/bitbucket/projects/IARP/repos/image_fetcher/browse/extractor=
s/mean_grey |
Marcus |