Page History

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Who

Planned - Monday

Accomplished - Friday

Done:

Under preview:

IN-CORE
- Science code (DIN model)
- Science code (transportation model follow up)
- Read the new semantic code
- TBD
SMM
- move macroscope to hubzero hosting
- Faculty trolling web app rapid prototyping

IN-CORE
- Science code DIN model send to collaborator (Round1)
- Science code transportation model send to collaborator (Round 2)
- Review the new semantic code (on-going)
SMM
- move macroscope to hubzero hosting (on-going)
- Faculty trolling web app rapid prototyping (django framework done; script done)

Cover Crop / Farmdoc
- Project meeting
- Plan next sprint
Ergo
- Test ERGO-544 - handling multiple geometry types for a schema type (e.g. pt/polygon building damage results)
IN-CORE
- Code review
- Continue working with OpenSees to define semi-annual meeting demo
- Finish sprint and plan next sprint
General
- Half days M - W, vacation Th, Fr

Signature_Analysis_Pipeline
- Allow negative value
- Remove ensembl gene name mapping
Gene_Prioritization_Pipeline
- Add impute_na function
Data_Cleanup_Pipeline
- Add status file for pasted_gene_set_conversion and create tests

Signature_Analysis_Pipeline
- Added logic to tolerant negative value and added tests file
- Removed ensembl gene name mapping
Gene_Prioritization_Pipeline
- Added impute_na function and updated related tests
Data_Cleanup_Pipeline
- Added status file for pasted_gene_set_conversion and create tests

Pearc18 terra paper submitted
laser3d point cloud science package overhaul
- remove PDAL dependency
- implement pure python for conversion code
- use open source LAS libraries for DSM generation
BETYdb 5.1 testing
terrautils pypi push and documentation
pyClowder2 client updates started

MDF
- read the docs for the Sphinx deployment
- Forge code merge conflicts
- Arrange a closed space for FF project
Farmdoc
- documentation/description
  Jira
  server JIRA
  columns key,summary,type,created,updated,due,assignee,reporter,priority,status,resolution
  serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
  key FD-2
  ,
- setup test VM
  Jira
  server JIRA
  columns key,summary,type,created,updated,due,assignee,reporter,priority,status,resolution
  serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
  key FD-3
FF space for Andre, see MDF
other: backup MWRD code

NDS
- Jira
  server JIRA
  serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
  key NDS-1116
KnowEnG
- Bring together all existing KnowEnG Kubernetes prototypes:
  - Development auto-scaling Kubernetes cluster on AWS
  - Run KnowEnG platform in Kubernetes using knoweng-startup YAMLs
  - Run refactored Dockerfiles for automated deployment of the platform
  - Run some test pipelines from the interface to test autoscaling
Crops in Silico
- Ensure prototype UI is still working
- Build up models.json around some simple working examples
- Start hooking up cis-apiserver to MongoDB
- Milestone update meeting

NDS
- Jira
  server JIRA
  serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
  key NDS-1116
KnowEnG
- Brought together all existing KnowEnG Kubernetes prototypes to deploy an autoscaling Kubernetes cluster on AWS with the refactored Docker images and pipeline jobs Python code
Crops in Silico
- Milestone update meeting
- Redeployed prototype UI on TACC
- Set up a static-only version of the prototype UI on github.io: https://cropsinsilico.github.io/
- Built a simple models.json around a working example