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Yong Wook Kim 

Minu Mathew 

Rob Kooper 


Priority Task List (01-21-2022):

  1. Test with Maize site data 
    1. PyFluxPro throwing an error in TIMESTAMP column
  2. Test with Maize Control site data
  3. Test with Miscanthus site data
  4. Test with Miscanthus control site data
  5. Create logging
  6. Formatting L1 file for AmeriFlux submission
    1. Need key from Bethany
  7. Implementing range checks in L2 in a QAQC part before PyFluxPro module.



Priority Task list  :

  1. Automate / code PyFluxPro “Creating the Database” section. (Done)
    1. Test with various dataset.
      1. Run EddyPro for Jan 2021 with 2 weeks data
      2. Make the below changes for the file output from Eddypro run:
        1. Match the meta data header rows in both files.
        2. Change timestamp format
        3. Convert temperature units for various columns
        4. Convert units and rename column
        5. Timestamp checks - check the first and last timestamps - should be 00:00 and 23:00.(we don't need to do it, confirmed to Bethany)
      3. Manual entry of 2 sheets in excel. Copy output files from preprocessor.py and the changed output file from EddyPro run.
      4. Install and run PyFluxPro
    2. Man hours = approx. 15 hours
  2.  Create a function to check if required variables are available and correctly formatted for eddypro in format.py
    1. Required variables : Ambient Relative Humidity (RH), Global Radiation (SWIN), Longwave Incoming Radiation (LWIN), Photosynthetically Active Radiation (PPFD) (Done)
    2. Check the variable upper/lower case names. (Done)
    3. Check if eddypro reads variables in case-sensitive manner.
      1. EddyPro labels are case-sensitive. The data will not get read to EddyPro.
    4. Man hours = approx. 4 hours
  3. Test preprocessor.py, format.py and eddypro headless with Sept - Oct 2020 data. (Mac has a problem)
    1. Man hours = approx. 2 hours
  4. Create a function for quality check in precip data. This should be in preprocessor.py.
    1. Missing timestamp check : the function should break and write the till then processed output to file.
    2. Possible data values check : The range of precip data is 0-0.2 mm. the function should break and write the till then processed output to file.
    3. Man hours = approx. 4 hours
  5. Formatting the EddyPro output for AmeriFlux publication (changing the variables)
    1. L1 processing
    2. L2 Processing
    3. Man hours = approx. two days per L1 and L2

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