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akka.fp.Loader  [FP-Akka module]

• Parses command line options for configuring MongoDBReader and MongoDBWriter actors.
• Instantiates and runs workflow comprising five Akka actors represented by the five class dependencies below.

• Internally creates an instance of the nested class ScientificNameValidatorInvocation.

• Injects fp.services.COLService into the scientificNameService field of the instantiated akka.fp.NewScientificName actor.

akka.fp.NewScientificNameValidator  [FP-Akka module]

• • Akka actor for validating scientific name and authorship fields.
  • Uses the class injected into the scientificNameService field (fp.services.COLService and its parent fp.services.SciNameServiceParent) to carry out validation tasks
  • Receives individual SpecimenRecord instances from upstream MongoDBReader.  For each record:
    • Disassembles the specimen
    records
    • record into fields.
    • Calls the validateScientificName() method  on the scientificNameService (implemented by fp.services.SciNameServiceParent) passing the individual field values from the record.
    • Calls getters getCurationStatus(), getCorrectedScientificName(), getCorrectedAuthor(), getLSID(), getComment(), getServiceName()
    on  fp.services.SciNameServiceParent to
    • on the scientificNameService to extract validation results.
  • Builds an instance of fp.util.CurationCommentType using the results from fp.services.SciNameServiceParent.
  • • If the result returned by getCurationStatus() is CURATED or Filled_In, replaces the scientificName and scientificNameAuthorship fields in the input specimen record with the results from getCorrectedScientificName() and getCorrectedAuthor() respectively.
    • Adds to the input specimen record
    Adds
    • three fields with labels scinComment, scinStatus, and scinSource
     to the input specimen record using the values returned from fp.util.CurationCommentType
    •  using the results from getCurationStatus(), getComment(), and getServiceName() on the scientificNameService.
    • Forwards the updated specimen record
    (with three new fields)
    • to downstream actors in workflow.

fp.services.COLService [FP-KurationServices module]

• • • • Derived from fp.services.SciNameServiceParent (to which it defers most method calls).
      • Overrides nameSearchAgainstServices() to look up scientific name and author in the Catalog of Life using the web service at http://www.catalogueoflife.org/col/webservice.

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