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(Gregory Jansen, Rui Liu) Developer downloads BrownDog development environment in docker container (in dockerhub, link on BD webpage)
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serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
key BD-956
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serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
key BD-957
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serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
key BD-958
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serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
key BD-959
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serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
key BD-960
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serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
key BD-1009
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serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
key BD-1017
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serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
key BD-1007
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serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
key BD-1016
- Contains running Clowder instance, Polyglot instance, basic development tools, mabye even an IDE configured and ready to go
- Contains a bare-bones extractor ready to be modified for a new tool (with comments suggesting where to edit, in various languages e.g. python, C++, Java, ..., and docker sample file)
- Contains a bare-bones converter ready to be modified for a new tool (with comments suggesting where to edit, in various languages e.g. bash, bat, ahk, python, ..., and docker sample file)
- (Done) Polyglot changes from redirecting to SS to downloading and serving converted files to users' "/file/" requests, to support 1 Pol + multi SS docker containers on the same VM.
- (Done - Rui provided the files/images.) docker-compose.yml file, docker images for Polyglot server + 2 different SS to work together on the same VM.
(Gregory Jansen, Smruti Padhy) Developer installs tool, creates BrownDog interface script(s)
- Adds sample input file(s)
- Example extractor: imagemagick edge detector
- Example converter: imagemagick jpg to ico converter
(Gregory Jansen, Smruti Padhy)Developer creates dockerfile
- For extractors this should contain only the tool, its dependencies, and the extractor
- For converters this should contain the basic Polyglot setup, ideally only the Software Server, the tool, its dependencies, and the converter interface script
- Jira
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  serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
  key BD-983
(Rui Liu, Inna Zharnitsky) Developer submits tool to Tools Catalog (using BrownDog account)
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serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
key BD-961
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serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
key BD-962
- (Done) BrownDog interface script(s), dockerfile, sample input, sample output
- TODO: Documentation on how to add tool to Tools Catalog
- (Done) Through web interface
- Through script in development environment (probably the ideal way)
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  serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
  key BD-962
(Inna Zharnitsky, Marcus Slavenas) Admin presses Admin reviews and tests tool by pressing button which deploys tool in a separate Clowder/Polyglot sandbox, passes in the given input file, and checks the obtained output file against what is provided
- Returns pass/fail
1. Manual review source code and docker file
2. If ok, reviewer submits tool for testing from tool catalog ui
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  serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
  key BD-968
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  serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
  key BD-969
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  serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
  key BD-1055
  1. Build docker image using local parameters
  2. If user provides sample output run script to test inputs/outputs
    1. if not, manual inspections is required
  3. Scripts show pass/fail in tool script
- Admin click accept or reject
(Rui Liu, Inna Zharnitsky) Admin deploys tool by selecting instances to deploy interface on
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serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
key BD-916
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serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
key BD-954
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serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
key BD-733
(Rui Liu) Admin selects instances to deploy interface on
- e.g. dts-dev or dts
- selects minimum number of instances to provision (e.g. 5 instances)
- presses button to deploy
- Elasticity backend: deploy docker images
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  serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
  key BD-890
  , deploy VM images
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  serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
  key BD-930
  , stop
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  serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
  key BD-941
  .
- Tool Catalog UI: BD-733 (deploy), BD-954 (stop).
- Task: integration testing after the web UI part is done.
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  serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
  key BD-975
(Sandeep Puthanveetil Satheesan) Admin receives status page showing number of tools deployed and where, load on each tool, etc...
- No support for this at this time.
- How to pull this from MongoDB

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(Luigi Marini) API Gateway with keys and tokens (uses Crowd credentials)
- (Not for April 4) Forwarding user credentials to Clowder
- Clients
  - (Marcus Slavenas) MatlabMatlab
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    serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
    key BD-620
    - Working and includes test script: DAP Outputs, DAP Convert, DTS Extract, and Download File
    - Not yet translated from bd.py: index, find, descriptor distance
  - (Smruti Padhy) R R – available
  - (Luigi Marini) curlbash script using curl
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    serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
    key BD-984
  - (Luigi Marini) Python – available bd-cli
  - (Smruti Padhy) Windows Windows – Dap is there, for DTS not sure
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    serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
    key BD-1004
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    serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
    key BD-1005
  - (Smruti Padhy) Bookmarklet -
  - (Smruti Padhy) Chrome Extension
  - Add keys and tokens to all clients
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      key BD-986
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      key BD-987
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      key BD-988
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      key BD-988
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      key BD-989
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      key BD-990
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      key BD-991
(Jong Lee, Eugene Roeder) Simple web interface (requires BrownDog account)
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serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
key BD-967
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serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
key BD-970
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serverId b14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
key BD-976
- Web form with field box for file URL or upload
- Tool selection dropdown box (means of selecting a specific tool)
- Output select dropdown box (means of allowing system to select tool)
  - Clowder will run all relevant extractors (obtained by selecting "json" as the output)
  - Polyglot will use I/O-graph
- Suggestions pane will update below
  - REST API performing this same operation
  - Python code in Jupyter lab notebook
  - R code
  - Matlab code
  - curl commands
  - php

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