Product | ProductDescriptionDescription | Dependencies | Status |
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kurator-akka | Workflow Embeddable, lightweight workflow engine and language specification language employing the Akka actor framework, with bindings to other Kurator products, and providing support for provenance-enabled automation of workflows comprising data cleaning and biodiversity data analysis steps. | | |
kurator-akka-gui | Installable web application and browser-based user interface for (a) composing and executing workflows using the kurator-akka platform, or (b) manually executing a sequence of workflow steps implemented as remote service calls. | | |
yesworkflow | Tool for interpreting special comments in a conventional script (written using R, Python, etc) that declare the dataflow aspects of the script. YesWorkflow will enable the provenance of the results of curation scripts (using e.g., the kuration-python, kuration-r packages) to be inferred and reported without using a scientific workflow management system (such as kurator-akka, Taverna, RestFlow, or Galaxy). | YesWorkflow.org | |
kurator-restflow | RestFlow module with Full-featured workflow engine based on RestFlow, with bindings to Kurator products and supporting , with support for provenance-enabled automation of workflows comprising data cleaning and biodiversity data analysis steps, and providing features for automatically organizing intermediate and final data -cleaning workflows.products in a directory hierarchy. | RestFlow | |
kurator-galaxy | Suite of Galaxy tools providing integration with other Kurator products and enabling authoring and execution of curation workflows via the Galaxy web interface. | Galaxy | | |
kurator-actor-container | Framework for developing actors that run in multiple workflow systems (kurator-akka, RestFlow, Galaxy, etc) without modification, and supporting actor 'black-box' implementation in Java, Groovy, Python, bash, perl, R, and other languages as needed. | | |
kurator-python | Python package providing tight integration with other Kurator products and supporting provenance-enabled scripting of data cleaning workflows. | | Status |
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colour | Yellow |
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title | Approved |
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kurator-r | R package providing tight integration with other Kurator products and supporting provenance-enabled scripting of data cleaning workflows. | | | |
kurator- | galaxyruby | Ruby package providing tight | Suite of Galaxy tools providing integration with other Kurator products and supporting provenance-enabled scripting of data cleaning workflows. | | |
kurator-notebook | IPython 'magics' for running kurator components and workflows from within IPython and IPython Notebooks. |
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kurator-provpackager | Framework for packaging kurator actors, workflows, and other products; deploying and executing packaged components as actors for multiple workflow systems, as command-line executables, as language-specific libraries, and as RESTful services deployed to web containers; and for publishing and installing these packages via standard delivery mechanisms including brew, apt-get, yum, maven, ruby gems, etc. | | Status |
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colour | Yellow |
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title | Approved |
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kurator-prov | Model, A model, relational schema, database, and tools for client library, and command-line tools for storing and querying provenance recorded by Kurator components, workflows, and scripts during individual workflow runs. | | Status |
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colour | Yellow |
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title | ProposedApproved |
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kurator-filteredproject-push histories | Common framework for managing, exploring, and querying provenance captured from multiple kurator workflow runs associated with a single project. | | |
kurator-filtered-push | Kurator components for creating annotations on specimen and observation records and submitting them to a FilteredPush network from the command line, from scripts, and from workflow systems. | FPush client integration | Status |
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colour | Yellow |
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title | Approved |
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kurator-date-validator | Kurator components for validating and updating the collection event date fields in one or more specimen or observation records from the command line, from scripts, and from workflow systems. | FPush date validator | Status |
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colour | Yellow |
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title | Proposed |
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kurator-name-validator | Kurator components for validating and updating the scientific name fields in one or more specimen or observation records from the command line, from scripts, and from workflow systems. | FPush scientific name validator | Status |
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colour | Yellow |
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title | Approved |
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kurator- | namegeoref-validator | | statusKurator compoents for validating and updating the coordinates fields in one or more specimen or observation records from the command line, from scripts, and from workflow systems. | FPush georeference validator | | Proposed |
kurator-georef-validatorws-wrappers | Kurator components for invoking diverse biodiversity data curation and analysis web services from the command line, from scripts, and from workflow systems; with support for caching results, handling retries and timeouts, and failover to alternative services. | BiodiversityCatalogue | Status |
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colour | Yellow |
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title | Approved |
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kurator-data-access | Kurator components for retrieving records and data sets from internet-accessible biodiversity data sources. | | |
kurator-identifier | Kurator components for looking up the identifier (e.g. DOI, UUID) for an arbitrary biodiversity-data related object. | | |