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JSON Document Example
Mapping Table
Note: Changing to camel case notation for field names as MongoDB documents follow JSON.
Sl. No. | Tools Catalog Field | Transformations Catalog Field | Type | Remarks |
---|
1. | status | N/A | Integer |
|
2. | creationDate | dateCreated | Date |
|
3. | updateDate | dateUpdated | Date |
|
4. | downloads | N/A | Integer |
|
5. | license | N/A | String |
|
6. | whatsnew | description | String |
|
7. | compatibility | N/A | String |
|
8. | url | url | String | URL |
9. | sample_input | N/A | String | URL |
10. | sample_output | N/A | String | URL |
11. | interfaceLevel | N/A | Integer |
|
12. | dockerimageName | dockerImageName | String |
|
13. | vmImageName | N/A | String |
|
14. | dockerfile | N/A | String | Email ID |
15. | author | author | String |
|
16. | dependencies | dependencies | Array | Array of Strings |
17. | transformation_type | transformationType | String | Originally this field type was an integrer with values 1 for converter and 2 for extractor |
18. | transformation_id | transformationId | String | Extractor name / converter name |
19. | title | title | String |
|
Transformations Catalog Example
Code Block |
---|
language | js |
---|
linenumbers | true |
---|
|
{
"_id" : ObjectId("53864aee7400009900ec8d22"),
"dateCreated" : ISODate("2014-05-28T20:45:34.412Z"),
"dateUpdated" : ISODate("2016-11-21T04:09:47.836Z"),
"description" : "Identify tumors in microscopy images.",
"url" : "https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofiler/cellprofiler-tumor?raw",
"dockerImageName" : "",
"author" : "ruiliu@illinois.edu",
"dependencies" : [
"Cell Profiler"
],
"externalServices" : [
],
"transformationType" : "extractor",
"transformationId" : "",
"title" : "Tumors",
"status" : "submitted"
} |
Code Block |
---|
language | js |
---|
linenumbers | true |
---|
|
{
"@context": "http://clowder.ncsa.illinois.edu/contexts/extractors.jsonld",
"name": "ncsa.csvheaders",
"version": "1.0",
"description": "Extracts the headers of CSV file. Only looks at the first row.",
"author": "Yan Zhao <yanzhao3@illinois.edu>",
"contributors": ["Luigi Marini <lmarini@illinois.edu>"],
"contexts": [
{
"csv_headers": "http://clowder.ncsa.illinois.edu/metadata/ncsa.csvheaders#csv_headers"
}
],
"repository": [
{
"repType": "git",
"repUrl": "https://opensource.ncsa.illinois.edu/bitbucket/scm/iarp/extractors.git"
},
{
"repType": "docker",
"repUrl": "clowder/extractors-csvheaders"
}
],
"process": {
"file": [
"text/csv"
]
},
"external_services":[],
"dependencies": [],
"bibtex": []
} |
Converter Info Example
Code Block |
---|
language | js |
---|
linenumbers | true |
---|
|
{
"name": "ImageMagick",
"version": "1.0",
"description": "Converts images from one format to another",
"author": "Kenton McHenry <mchenry@illinois.edu>",
"contributors": ["Bing Zhang <bing@illinois.edu>"],
"repository": [
{
"repType": "git",
"repUrl": "opensource.ncsa.illinois.edu/bitbucket/scm/pol/converters-imagemagick.git"
},
{
"repType": "docker",
"repUrl": "ncsapolyglot/converters-imagemagick"
}
],
"input_formats": [
"png", "bmp"
],
"output_formats": [
"jpeg", "jpg", "pdf"
],
"external_services":[],
"dependencies": ["ImageMagick"],
"bibtex": []
} |
Current Tools Catalog Example
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